Citrus Sinensis ID: 027060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEcccccEEEEcccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHcHHcccccccccHHHHHHHHHHHHccccEEEcccccccccccccccEcccccEEEEEEccEEEcccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsghhgflsFSWIRrnanaqpvfgktrslvqNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRllptsalasnvnvkhivglagppgagkstLAAEVVRRINkiwpqkassfdsqdpkeaharrgapwtfnpLLLLNCLKNLrnqgsvyapsfdhgvgdpveddILVGLQHKVvivdgnylfldggvwkdvssmfdekw
Flexible Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsGHHGFLSFSWIRRNANAQPvfgktrslvqnktslkvlcsqrreipvVEARCMDEVYDALAQRLLPTSALASNVNVKHIVglagppgagKSTLAAEVVRRINKIWpqkassfdsqdpKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Low Complexity Region (SEG)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFnpllllnclknlrnQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered region (IsUnstruct)
*********************************HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP******************GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV********
Disordered Region (DISOPRED)
*****************************************************************************VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered Region (DISEMBL)
****************************LPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ****************RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered Region (DISPRO)
***SSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q9UTC5	235	Putative uridine kinase C	yes	no	0.524	0.510	0.375	4e-19
P11664	237	Uncharacterized protein Y	N/A	no	0.576	0.556	0.302	5e-07
C5DNG5	347	ATP-dependent kinase YFH7	yes	no	0.659	0.435	0.252	1e-06
C5DXG0	375	ATP-dependent kinase YFH7	yes	no	0.379	0.232	0.280	9e-05
B2G996	307	Pantothenate kinase OS=La	yes	no	0.545	0.407	0.306	0.0002
A5VLY5	307	Pantothenate kinase OS=La	yes	no	0.545	0.407	0.306	0.0002
P43591	353	ATP-dependent kinase YFH7	yes	no	0.336	0.218	0.254	0.0003
A7A245	353	ATP-dependent kinase YFH7	N/A	no	0.336	0.218	0.254	0.0003
B5VI33	353	ATP-dependent kinase YFH7	N/A	no	0.336	0.218	0.254	0.0003
C7GYB3	353	ATP-dependent kinase YFH7	N/A	no	0.336	0.218	0.254	0.0003

>sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 16/136 (11%)

Query: 109 IVGLAGPPGAGKSTLAAEVVR--------RINKIWPQKASSFDSQD------PKEAHARR 154
           ++GLAG PG+GKSTL A + +         I KI P     +  ++      P++A A R
Sbjct: 31  LIGLAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMDGFHYSLEELDRFDNPEKARALR 90

Query: 155 GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
           GA WTF+  L  + ++ ++      +YAPSFDH +GDPV DDI V  +++++I +GNYL 
Sbjct: 91  GAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPKNRILIFEGNYLL 150

Query: 213 LDGGVWKDVSSMFDEK 228
           L+   W D   ++D K
Sbjct: 151 LNKPPWSDACKLYDIK 166

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8

>sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 76/175 (43%), Gaps = 43/175 (24%)

Query: 78  VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
           ++A+  +E  + + + LL   A    VN +   +V L  PPG GKSTL           W
Sbjct: 12  IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63

Query: 136 PQKASSFDSQDPK-------------------EAHARR---GAPWTFNPLLLLNCLKNLR 173
              A     QDP+                   +AH  R   GAP TF+   +    +NLR
Sbjct: 64  EYLAQ----QDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFD---VAKLTENLR 116

Query: 174 N--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226
              +G    P +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct: 117 QVVEGDCTWPQYDRQKHDPVEDALHVTA--PLVIVEGNWLLLDDEKWLELASFCD 169

Escherichia coli (strain K12) (taxid: 83333)

>sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 77/202 (38%), Gaps = 51/202 (25%)

Query: 75  IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV- 128
           IP  E + + +V +        Q   P   +  N   + +VG+ G P + +    A +  
Sbjct: 81  IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNSIRVENVAPLEP 140

Query: 129 ----RRINKIWPQKA--------SSFDSQDPKEAHARRGAPWTFN--------PLLLLNC 168
                +I KI P             FD  DP EAH RRG+P TF+         LL   C
Sbjct: 141 SNHDYKIAKIVPMDGFHLSRRHLDHFD--DPVEAHRRRGSPPTFDSNNCLQLCKLLAKTC 198

Query: 169 L--------KNLRNQG---------------SVYAPSFDHGVGDPVEDDILVGLQHKVVI 205
                    K   + G               S+Y P FDH + DP      V    ++++
Sbjct: 199 TIKPTLPVNKTTADTGTLFDKISDTFSESVPSIYVPGFDHALKDPSTGQHCVDAFTRIIV 258

Query: 206 VDGNYLFLDGGVWKDVSSMFDE 227
           ++G YL LD   W+D+   F +
Sbjct: 259 LEGLYLLLDEDNWRDIYPTFKD 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 27/114 (23%)

Query: 137 QKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS------------------- 177
           Q  SSF  Q+P+EAH RRG+P TF+        K L    +                   
Sbjct: 195 QCLSSF--QNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTY 252

Query: 178 ------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225
                 +  P FDH + DP  D   +    ++VI++G YL  D   W+ V  + 
Sbjct: 253 DPHFPCIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEIL 306

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B2G996|COAA_LACRJ Pantothenate kinase OS=Lactobacillus reuteri (strain JCM 1112) GN=coaA PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 12/137 (8%)

Query: 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD----PKEAHARRGA- 156
           S + + +I+G+AG    GKST+A  +   +NK+ P K     + D    P     RRG  
Sbjct: 78  STMRIPYIIGIAGSVAVGKSTIARLISILLNKMLPDKRVELMTTDGFLYPNAELKRRGIM 137

Query: 157 -----PWTFNPLLLLNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG-N 209
                P +++   LL  L +++  +  V AP++ H V D   D  LV     ++IV+G N
Sbjct: 138 DRKGFPESYDMERLLKFLNDVKAGEPVVKAPTYSHQVYDVQLDKPLVIDSPDILIVEGIN 197

Query: 210 YLFLDGGVWKDVSSMFD 226
            L L       VS  FD
Sbjct: 198 TLQLPSNQQLYVSDYFD 214

Lactobacillus reuteri (strain JCM 1112) (taxid: 557433)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|A5VLY5|COAA_LACRD Pantothenate kinase OS=Lactobacillus reuteri (strain DSM 20016) GN=coaA PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 12/137 (8%)

Query: 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD----PKEAHARRGA- 156
           S + + +I+G+AG    GKST+A  +   +NK+ P K     + D    P     RRG  
Sbjct: 78  STMRIPYIIGIAGSVAVGKSTIARLISILLNKMLPDKRVELMTTDGFLYPNAELKRRGIM 137

Query: 157 -----PWTFNPLLLLNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG-N 209
                P +++   LL  L +++  +  V AP++ H V D   D  LV     ++IV+G N
Sbjct: 138 DRKGFPESYDMERLLKFLNDVKAGEPVVKAPTYSHQVYDVQLDKPLVIDSPDILIVEGIN 197

Query: 210 YLFLDGGVWKDVSSMFD 226
            L L       VS  FD
Sbjct: 198 TLQLPSNQQLYVSDYFD 214

Lactobacillus reuteri (strain DSM 20016) (taxid: 557436)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 29/106 (27%)

Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
           +DP+ AH RRG+P TF+    L   K L                                
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234

Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
             ++ P F+H + DP  D   +    ++VI++G YL  D   WK +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 29/106 (27%)

Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
           +DP+ AH RRG+P TF+    L   K L                                
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234

Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
             ++ P F+H + DP  D   +    ++VI++G YL  D   WK +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 29/106 (27%)

Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
           +DP+ AH RRG+P TF+    L   K L                                
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234

Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
             ++ P F+H + DP  D   +    ++VI++G YL  D   WK +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 29/106 (27%)

Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
           +DP+ AH RRG+P TF+    L   K L                                
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQKI 234

Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
             ++ P F+H + DP  D   +    ++VI++G YL  D   WK +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain JAY291) (taxid: 574961)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
255559925	312	ATP binding protein, putative [Ricinus c	0.991	0.727	0.621	7e-80
225437219	312	PREDICTED: putative uridine kinase C227.	0.991	0.727	0.593	1e-73
449519647	251	PREDICTED: putative uridine kinase C227.	0.847	0.772	0.599	3e-71
449452236	309	PREDICTED: putative uridine kinase C227.	0.847	0.627	0.599	3e-71
356572241	309	PREDICTED: ATP-dependent kinase YFH7-lik	0.956	0.708	0.521	6e-64
297843102	301	phosphoribulokinase/uridine kinase [Arab	0.938	0.714	0.548	1e-61
42561642	301	P-loop containing nucleoside triphosphat	0.947	0.720	0.529	8e-61
224082738	231	predicted protein [Populus trichocarpa]	0.641	0.636	0.670	1e-60
326508064	322	predicted protein [Hordeum vulgare subsp	0.790	0.562	0.536	2e-55
357157235	322	PREDICTED: putative uridine kinase C227.	0.703	0.5	0.561	7e-55

>gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis]

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 159/256 (62%), Positives = 184/256 (71%), Gaps = 29/256 (11%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGK-TRSLV 59
           M+VSSLS T RAC  S +TES  LKR   PS H   +S S  +R +  Q +F + T   V
Sbjct: 1   MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58

Query: 60  QNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             + S+KVLCS RR++PVVEA  M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59  FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQ--------------------------DPKEAHAR 153
           KST+A+EVVRR+NKIWPQKASSFDSQ                          +P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178

Query: 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213
           RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238

Query: 214 DGGVWKDVSSMFDEKW 229
             G WKD+SSMFDEKW
Sbjct: 239 GEGAWKDISSMFDEKW 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/256 (59%), Positives = 184/256 (71%), Gaps = 29/256 (11%)

Query: 1   MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLV 59
           M+V+S ST+ +   SSSS+ E   L++ ++P  +   +  S  RR+   QP+FG TRS  
Sbjct: 1   MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58

Query: 60  QNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             ++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+K IVGLAGPPGAG
Sbjct: 59  GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQ--------------------------DPKEAHAR 153
           KSTLA+EV  R+NK+WPQKASSFDSQ                          DP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178

Query: 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213
           RGAPWTF+P  LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238

Query: 214 DGGVWKDVSSMFDEKW 229
             G WK+VSSMFDEKW
Sbjct: 239 QEGDWKEVSSMFDEKW 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519647|ref|XP_004166846.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/222 (59%), Positives = 162/222 (72%), Gaps = 28/222 (12%)

Query: 34  HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQR 93
           H FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+D++YD LA+R
Sbjct: 32  HNFLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCIDDIYDDLARR 89

Query: 94  LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-------- 145
           LLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS DSQ        
Sbjct: 90  LLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMDSQVNPADVAA 149

Query: 146 ------------------DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 187
                             +P+EAHARRGAPWTFNP LLL CLK LR+QGSVYAPSFDHGV
Sbjct: 150 VLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGSVYAPSFDHGV 209

Query: 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
           GDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKW
Sbjct: 210 GDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKW 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/222 (59%), Positives = 162/222 (72%), Gaps = 28/222 (12%)

Query: 34  HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQR 93
           H FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+D++YD LA+R
Sbjct: 32  HNFLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCIDDIYDDLARR 89

Query: 94  LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-------- 145
           LLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS DSQ        
Sbjct: 90  LLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMDSQVNPADVAA 149

Query: 146 ------------------DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 187
                             +P+EAHARRGAPWTFNP LLL CLK LR+QGSVYAPSFDHGV
Sbjct: 150 VLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGSVYAPSFDHGV 209

Query: 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
           GDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKW
Sbjct: 210 GDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKW 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max]

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 136/261 (52%), Positives = 164/261 (62%), Gaps = 42/261 (16%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHHGFLSFSWIRRNANAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQ--------------------------DPK 148
           PPGAGKSTLA EV RRINK+WP+KASSFDSQ                          +P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 149 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 209 NYLFLDGGVWKDVSSMFDEKW 229
           NYL L+ GVWK++SS+FDEKW
Sbjct: 231 NYLLLEDGVWKEISSLFDEKW 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/257 (54%), Positives = 169/257 (65%), Gaps = 42/257 (16%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S          EL S   GF    W       Q +     S  +
Sbjct: 1   MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46

Query: 61  NKTSLKVL--CSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
            KT+ + L  CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGA
Sbjct: 47  RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106

Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQ--------------------------DPKEAHA 152
           GKSTLA EVVRR+NK+WPQKASSFD++                          DPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166

Query: 153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
           RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ 
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226

Query: 213 LDGGVWKDVSSMFDEKW 229
           L+ G WKD+S MFDEKW
Sbjct: 227 LEEGSWKDISDMFDEKW 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 135/255 (52%), Positives = 166/255 (65%), Gaps = 38/255 (14%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S             S   GF    W   + +  P+    R   +
Sbjct: 1   MEVSSFSTVPRYCNSRSFVPEL--------SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48

Query: 61  NKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
           N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct: 49  NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query: 121 STLAAEVVRRINKIWPQKASSFDSQ--------------------------DPKEAHARR 154
           ST+A EVVRR+NK+WPQKA+SFD++                          DPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query: 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
           GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query: 215 GGVWKDVSSMFDEKW 229
            G WKD+S MFDEKW
Sbjct: 229 EGSWKDISDMFDEKW 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/173 (67%), Positives = 131/173 (75%), Gaps = 26/173 (15%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           MDE+YDALA RLLPT+  ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1   MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60

Query: 143 DSQ--------------------------DPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 176
           D Q                          +P+EAHARRGAPWTF+P LLL CL+ LRN+G
Sbjct: 61  DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEG 120

Query: 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
           SVYAPSFDHGVGDPVEDDI V LQHKVVIV+GNYL L+ G WKDVSSMFDEKW
Sbjct: 121 SVYAPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEKW 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508064|dbj|BAJ86775.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/207 (53%), Positives = 137/207 (66%), Gaps = 26/207 (12%)

Query: 49  QPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKH 108
           QP F +  +    K    V C QR+  P +EA+ M+EVYDALA+ LL       N++ K+
Sbjct: 56  QPAFHQPVTRATWKKKHNVTCYQRQGAPQIEAKSMEEVYDALAEHLLSALKSIDNLDSKY 115

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQK-------------------------ASSFD 143
           IVGLAGPPGAGKST+A+EVVRR+NK W QK                          S  D
Sbjct: 116 IVGLAGPPGAGKSTVASEVVRRVNKRWSQKHAKDGSPNSDEDIATMLPMDGFHLYRSQLD 175

Query: 144 S-QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
           + +DPKEAHARRGAPWTFNP L L CL+ L+ +GSVYAPSFDHGVGDPVE+DI V  QHK
Sbjct: 176 AMEDPKEAHARRGAPWTFNPSLFLKCLQILKEEGSVYAPSFDHGVGDPVENDIFVKPQHK 235

Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKW 229
           +VIV+GNYL L+  VW+++ +MFDEKW
Sbjct: 236 IVIVEGNYLLLEEDVWREIRNMFDEKW 262

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357157235|ref|XP_003577730.1| PREDICTED: putative uridine kinase C227.14-like [Brachypodium distachyon]

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 129/187 (68%), Gaps = 26/187 (13%)

Query: 69  CSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128
           C QR+  P +EA+ M+EVYDALA+ LL       +++ K+IVGLAGPPGAGKST+A+EVV
Sbjct: 76  CYQRQGAPQIEAKSMEEVYDALAEHLLSVLKDVDHLDSKYIVGLAGPPGAGKSTVASEVV 135

Query: 129 RRINKIWPQKASSFDS--------------------------QDPKEAHARRGAPWTFNP 162
           RR+N  W +K ++  S                          +DPKEAHARRGAPWTFNP
Sbjct: 136 RRVNMHWSKKHATDSSLISNEDIATMLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFNP 195

Query: 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222
            L LNCLK LR +GSVYAPSFDHGVGDPVE+DI V  QHK+VIV+GNYL L+  +W+D+ 
Sbjct: 196 SLFLNCLKTLRKEGSVYAPSFDHGVGDPVENDIFVKPQHKIVIVEGNYLLLEENIWRDIR 255

Query: 223 SMFDEKW 229
            MFDEKW
Sbjct: 256 GMFDEKW 262

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2007544	301	AT1G03030 [Arabidopsis thalian	0.393	0.299	0.659	1.8e-60
UNIPROTKB|G4MQ63	236	MGG_02303 "Phosphoribulokinase	0.366	0.355	0.414	1.7e-18
POMBASE|SPAC227.14	235	SPAC227.14 "uridine kinase (pr	0.524	0.510	0.367	3.2e-17
CGD|CAL0002107	226	orf19.7061 [Candida albicans (	0.558	0.566	0.328	5.3e-17
ASPGD|ASPL0000094429	583	AN11942 [Emericella nidulans (	0.362	0.142	0.309	1.2e-14
ASPGD|ASPL0000074767	234	AN4382 [Emericella nidulans (t	0.366	0.358	0.359	1.4e-14
SGD|S000001903	353	YFH7 "Putative kinase with sim	0.192	0.124	0.318	8.9e-07
UNIPROTKB|P11664	237	yggC "conserved protein with n	0.637	0.616	0.298	3.8e-06

TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 60/91 (65%), Positives = 67/91 (73%)

Query:   140 SSFDS-QDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVG 198
             S  D+ +DPKEAHARRGAPWTF              +GSVY PSFDHGVGDPVEDDI V 
Sbjct:   153 SQLDAMEDPKEAHARRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVS 212

Query:   199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
             LQHKVVIV+GNY+ L+ G WKD+S MFDEKW
Sbjct:   213 LQHKVVIVEGNYILLEEGSWKDISDMFDEKW 243

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 164 (62.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 39/94 (41%), Positives = 50/94 (53%)

Query:   146 DPKEAHARRGAPWTFXXXXXXXXXXXXX--------XQGSV--YAPSFDHGVGDPVEDDI 195
             DP+ A  RRGA +TF                      QG+V  YAPSFDH V DPV D I
Sbjct:    85 DPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEEDSGAQGTVTIYAPSFDHAVKDPVADSI 144

Query:   196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
              +  + ++VI++GNYL LD   WK  +S+ DE W
Sbjct:   145 PISPKMRIVIIEGNYLALDREPWKSAASLLDEIW 178

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 50/136 (36%), Positives = 71/136 (52%)

Query:   109 IVGLAGPPGAGKSTLAAEVVRRIN--------KIWPQKASSFDSQD------PKEAHARR 154
             ++GLAG PG+GKSTL A + +  N        KI P     +  ++      P++A A R
Sbjct:    31 LIGLAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMDGFHYSLEELDRFDNPEKARALR 90

Query:   155 GAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
             GA WTF                   +YAPSFDH +GDPV DDI V  +++++I +GNYL 
Sbjct:    91 GAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPKNRILIFEGNYLL 150

Query:   213 LDGGVWKDVSSMFDEK 228
             L+   W D   ++D K
Sbjct:   151 LNKPPWSDACKLYDIK 166

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 46/140 (32%), Positives = 76/140 (54%)

Query:   102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN---KIWPQKASSFD---SQ-----DPKEA 150
             S+   ++++ LAG PG+GK+T A  + +R++   K+       F    S+     DPKEA
Sbjct:    29 SDSQPRYLISLAGVPGSGKTTFANAIAKRLSTFAKVVVLSQDGFHLYRSELTLMADPKEA 88

Query:   151 HARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209
               RRGAP+TF              +  ++ APSFDH + DP+EDDI++     ++I++GN
Sbjct:    89 FRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDDIVIHGNVDIIIIEGN 148

Query:   210 YLFLDGGVWKDVSSMFDEKW 229
             Y+ L    W ++ +  D+ W
Sbjct:   149 YVSLRDKYWDEIENFVDDTW 168

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)]

 Score = 143 (55.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 30/97 (30%), Positives = 47/97 (48%)

Query:   144 SQDPKEAHARRGAPWTFX--------------XXXXXXXXXXXXXQGSVYAPSFDHGVGD 189
             +++  EA+ RRGAPWTF                             G +YAP+F H   D
Sbjct:    94 NKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSSSSEETAGVLYAPTFSHSTKD 153

Query:   190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226
             P+ + I++     +VI++GNYL LD   W+D++ + D
Sbjct:   154 PIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVD 190

GO:0006059 "hexitol metabolic process" evidence=RCA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=RCA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)]

 Score = 150 (57.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 32/89 (35%), Positives = 46/89 (51%)

Query:   146 DPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVEDDILVGLQ 200
             DP+ A ARRGA +TF                     +++APSFDH V DPV++DI +   
Sbjct:    81 DPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDNDIPIAAA 140

Query:   201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
              +V+  +GNYL L+   W   + + DE W
Sbjct:   141 RRVIFFEGNYLSLNKEPWSSAAKLMDELW 169

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 85 (35.0 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query:   178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
             ++ P F+H + DP  D   +    ++VI++G YL  D   WK +
Sbjct:   237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKI 280

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016310 "phosphorylation" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)]

 Score = 125 (49.1 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 48/161 (29%), Positives = 70/161 (43%)

Query:    78 VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLA------AEVVR 129
             ++A+  +E  + + + LL   A    VN +   +V L  PPG GKSTL       A+   
Sbjct:    12 IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTTFWEYLAQQDP 71

Query:   130 RINKIWPQKASSFDSQDP-KEAHARR---GAPWTFXXXXXXXXXXXXXXQGSVYAPSFDH 185
              +  I       F   +   +AH  R   GAP TF              +G    P +D 
Sbjct:    72 ELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQYDR 130

Query:   186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226
                DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct:   131 QKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCD 169


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      229       215   0.00087  112 3  11 22  0.40    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  182 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.03u 0.13s 19.16t   Elapsed:  00:00:01
  Total cpu time:  19.03u 0.13s 19.16t   Elapsed:  00:00:01
  Start:  Thu May  9 21:32:06 2013   End:  Thu May  9 21:32:07 2013

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
PRK09270	229	PRK09270, PRK09270, nucleoside triphosphate hydrol	3e-30
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	1e-25
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	7e-10
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	5e-07
TIGR00235	207	TIGR00235, udk, uridine kinase	1e-06
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	4e-06
COG4240	300	COG4240, COG4240, Predicted kinase [General functi	4e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	1e-04
COG1703	323	COG1703, ArgK, Putative periplasmic protein kinase	2e-04
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	6e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	6e-04
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.002
pfam03308	267	pfam03308, ArgK, ArgK protein	0.003
pfam13238	128	pfam13238, AAA_18, AAA domain	0.004
COG1855	604	COG1855, COG1855, ATPase (PilT family) [General fu	0.004

>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed

 Score =  111 bits (279), Expect = 3e-30
 Identities = 62/167 (37%), Positives = 86/167 (51%), Gaps = 19/167 (11%)

Query: 78  VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
           V+A+  DE  +A+ + LL   +AL +    + IVG+AGPPGAGKSTLA  +   +     
Sbjct: 3   VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQ---- 58

Query: 137 QKASSFDSQDPK----------EAH---ARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPS 182
           Q       Q P           +AH    R+GAP TF+   L   L+ LR     VY P 
Sbjct: 59  QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRAGDDEVYWPV 118

Query: 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
           FD  + DPV D I+V    ++VIV+GNYL LD   W+ ++ +FD   
Sbjct: 119 FDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTI 165

Length = 229

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score =  100 bits (251), Expect = 1e-25
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 14/140 (10%)

Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQ--DP 147
           L +N      I+G+AG    GKST A  +++ +   WP+             + +   D 
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPESPKVDLVTMDGFHYPNAVLDE 132

Query: 148 KEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIV 206
           +   AR+G P +++   LL  L +++     V+AP + H + DPV D   V  Q  ++IV
Sbjct: 133 RGLMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIV 192

Query: 207 DGNYLFLDGGVWKDVSSMFD 226
           +GN +  DG  W  +S  FD
Sbjct: 193 EGNNVLQDGEPWLFLSDFFD 212

Length = 283

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SF---DSQDPKE--AHARRGAPWTFN 161
           I+G+AG  G+GK+T+A E+  ++        S   +    S  P E         P  F+
Sbjct: 10  IIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFD 69

Query: 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
             LL+  LK+L+    V  P +D+       + I V     VVIV+G  L  D    + +
Sbjct: 70  LDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND-VVIVEGILLLYD----ERL 124

Query: 222 SSMFDEK 228
             + D K
Sbjct: 125 RDLMDLK 131

Length = 218

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 25/139 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-------SFDS-QDPKEAHARRGA---- 156
           I+G+ G  GAGK+T+A   V    +     A         +D          R+ A    
Sbjct: 1   IIGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHPEDRKRAGNNH 60

Query: 157 -----PWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDILVGLQHKVVIVDGN 209
                P   +  LL    K L+  GS   P  +   G  DP   +++ G    ++  +G 
Sbjct: 61  YSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPELIEG--ADILFYEG- 117

Query: 210 YLFLDGGVWKDVSSMFDEK 228
              L G   + V+ + D K
Sbjct: 118 ---LHGLYDERVAQLLDLK 133

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 12/115 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW----PQKASSFDSQDPKEAHARRGA-----PWT 159
           I+G+ G  G+GK+T+A ++  ++ K+      Q  + +  Q   E  A R       P  
Sbjct: 8   IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQD-NYYKDQSHLE-MAERKKTNFDHPDA 65

Query: 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
           F+  LL   LKNL+N   +  P +D+      ++ + +     VVI++G     D
Sbjct: 66  FDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE-PKDVVILEGIMPLFD 119

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 14/128 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW----PQKASSFDSQDPKEAHARRGAPWTF-NPL 163
           I+G+AG  G+GK+T+A E++ ++         Q  S +     +E   R+   +   +  
Sbjct: 1   IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQD-SYYKDLSHEELEERKNNNYDHPDAF 59

Query: 164 ---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220
              LL++ L++L+N  SV  P +D      +++ + V     V+I++G     D    K+
Sbjct: 60  DFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETVTVY-PADVIILEGILALYD----KE 114

Query: 221 VSSMFDEK 228
           +  + D K
Sbjct: 115 LRDLMDLK 122

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only]

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 19/119 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR--------------R 154
           IVG++GP G+GKSTL+A +VR +     ++ ++    D    HA               R
Sbjct: 52  IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTR 111

Query: 155 GAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGDPVEDDILVGLQHKVVIVDG 208
           G P T +P L LN L  +   G  V  P FD     G GD       +  +  +VI++G
Sbjct: 112 GLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEG 170

Length = 300

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ + GPPG+GKSTLA ++  ++ 
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLG 24

Length = 114

>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
           R I +VE+R  D    ALA+ LL   AL       H++G+ G PGAGKSTL   + R 
Sbjct: 21  RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74

Length = 323

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 109 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFN----- 161
           +VG+AGP G+GK+T A +     R+N I P    S D          R     ++     
Sbjct: 1   VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYY-VPRKTPRDEDGNYDFESIL 58

Query: 162 --PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210
              LL  N L +L N   V  P +D   G       L      VVI++G Y
Sbjct: 59  DLDLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIY 108

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
             ++ + GPPG+GK+TLA  + R +  
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGP 28

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 89  ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
           A++ RL P SA    V    I+ L GP GAGKSTL A
Sbjct: 7   AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40

Length = 248

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL 123
           R I +VE+R         A+ LL    L       H VG+ G PGAGKSTL
Sbjct: 3   RAITLVESR------RPEARELL--RRLMPLTGRAHRVGITGVPGAGKSTL 45

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 20/99 (20%)

Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCL 169
           + + G PG+GK+TLA E+  R+  +             ++     G     +  +     
Sbjct: 1   ILITGTPGSGKTTLAKELAERLGDVL------------RDLAKENGLVLELDEEITDESK 48

Query: 170 KNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208
           +   +            + D +E  I    + + VI+DG
Sbjct: 49  RLDED--------KLAKLLDKLEKIIEELAEGENVIIDG 79

Length = 128

>gnl|CDD|224768 COG1855, COG1855, ATPase (PilT family) [General function prediction only]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 70  SQRREI----PVVEARCMD-EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLA 124
           S R EI    PVV+    D  + D L +RL      A  + +      AG PGAGKST A
Sbjct: 230 SDRWEITAVRPVVKLSLEDYGLSDKLKERLEER---AEGILI------AGAPGAGKSTFA 280

Query: 125 ---AEVVRRINKIWPQKASSFDSQDPKE 149
              AE      KI     S  D Q   E
Sbjct: 281 QALAEFYASQGKIVKTMESPRDLQVSPE 308

Length = 604

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.96
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.95
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.95
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.94
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.94
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.94
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.94
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.93
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.93
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.93
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.93
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.93
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.93
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.92
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.92
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.92
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.91
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.91
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.9
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.9
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.9
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.9
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.9
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.9
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.9
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.9
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.9
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.9
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.9
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.9
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.9
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.89
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.89
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.89
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.89
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.89
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.89
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.89
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.89
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.89
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.89
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.89
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.89
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.89
cd03246	173	ABCC_Protease_Secretion This family represents the	99.89
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.89
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.89
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.89
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.89
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.89
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.89
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.89
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.89
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.89
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.89
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.89
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.89
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.89
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.89
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.89
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.88
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.88
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.88
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.88
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.88
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.88
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.88
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.88
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.88
PRK10908	222	cell division protein FtsE; Provisional	99.88
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.88
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.88
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.88
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.88
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.88
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.88
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.88
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.88
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.88
COG4559	259	ABC-type hemin transport system, ATPase component	99.88
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.88
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.88
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.88
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.88
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.88
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.88
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.88
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.88
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.88
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.88
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.88
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.88
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.87
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.87
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.87
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.87
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.87
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.87
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.87
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.87
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.87
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.87
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.87
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.87
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.87
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.87
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.87
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.87
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.87
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.87
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.87
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.87
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.87
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.87
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.87
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.87
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.87
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.86
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.86
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.86
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.86
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.86
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.86
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.86
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.86
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.86
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.86
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.86
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.86
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.86
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.86
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.86
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.86
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.86
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.86
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.86
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.86
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.86
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.86
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.86
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.86
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.86
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.86
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.85
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.85
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.85
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.85
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.85
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.85
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.85
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.85
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.85
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.85
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.85
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.85
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.85
PRK10938	490	putative molybdenum transport ATP-binding protein	99.85
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.85
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.85
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.85
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.85
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.85
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.85
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.85
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.85
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.85
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.85
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.85
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.85
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.85
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.84
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.84
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.84
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.84
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.84
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.84
COG4181	228	Predicted ABC-type transport system involved in ly	99.84
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.84
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.84
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.84
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.84
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.84
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.84
COG1123	539	ATPase components of various ABC-type transport sy	99.84
COG0488	530	Uup ATPase components of ABC transporters with dup	99.84
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.84
PRK11147	635	ABC transporter ATPase component; Reviewed	99.83
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.83
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.83
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.83
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.83
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.83
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.83
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.83
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.83
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.83
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.83
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.83
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.83
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.83
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.82
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.82
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.82
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.82
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.82
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.82
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.82
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.82
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.82
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.82
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.82
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.82
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.82
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.81
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.81
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.81
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.81
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.81
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.81
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.81
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.81
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.81
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.81
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.81
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.81
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.8
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.8
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.8
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.8
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.8
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.8
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.8
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.8
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.8
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.8
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.8
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.8
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.8
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.8
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.8
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.8
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.79
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.79
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.79
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.79
COG4987	573	CydC ABC-type transport system involved in cytochr	99.79
PRK10938	490	putative molybdenum transport ATP-binding protein	99.79
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.79
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.79
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.79
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.79
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.79
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.79
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.79
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.78
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.78
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.78
PRK11147	635	ABC transporter ATPase component; Reviewed	99.78
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.78
COG0488	530	Uup ATPase components of ABC transporters with dup	99.78
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.78
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.78
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.77
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.77
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.77
COG4988	559	CydD ABC-type transport system involved in cytochr	99.77
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.77
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.77
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.77
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.76
COG1123	539	ATPase components of various ABC-type transport sy	99.76
PRK13409	590	putative ATPase RIL; Provisional	99.76
PLN03211	659	ABC transporter G-25; Provisional	99.76
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.76
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.76
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.75
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.75
PLN03232	1495	ABC transporter C family member; Provisional	99.75
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.75
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.74
PLN03130	1622	ABC transporter C family member; Provisional	99.74
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.74
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.73
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.73
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.73
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.73
COG4172	534	ABC-type uncharacterized transport system, duplica	99.72
PTZ00243	1560	ABC transporter; Provisional	99.72
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.72
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.72
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.72
PLN03073	718	ABC transporter F family; Provisional	99.72
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.72
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.72
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.7
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.7
PRK13409	590	putative ATPase RIL; Provisional	99.69
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.69
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.68
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.68
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.68
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.67
PLN03073	718	ABC transporter F family; Provisional	99.66
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.65
PLN03140	1470	ABC transporter G family member; Provisional	99.65
PLN03140	1470	ABC transporter G family member; Provisional	99.62
PLN03232	1495	ABC transporter C family member; Provisional	99.62
PLN03130	1622	ABC transporter C family member; Provisional	99.61
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.61
COG4172	534	ABC-type uncharacterized transport system, duplica	99.6
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.57
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.57
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.56
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.55
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.55
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.54
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.54
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.53
PTZ00243	1560	ABC transporter; Provisional	99.48
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	99.46
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.43
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.42
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.41
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.39
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.38
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.36
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.36
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.35
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.35
COG4178	604	ABC-type uncharacterized transport system, permeas	99.35
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.31
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.3
KOG0062	582	consensus ATPase component of ABC transporters wit	99.28
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.28
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.27
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.25
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.24
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.23
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.21
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	99.19
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.19
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.15
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.14
PLN02796	347	D-glycerate 3-kinase	99.1
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.09
PRK05439	311	pantothenate kinase; Provisional	99.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.03
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.02
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.01
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.01
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.98
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.98
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.97
PLN02318	656	phosphoribulokinase/uridine kinase	98.96
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.96
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.93
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.92
KOG0062	582	consensus ATPase component of ABC transporters wit	98.9
PTZ00301	210	uridine kinase; Provisional	98.9
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.89
PRK05480	209	uridine/cytidine kinase; Provisional	98.87
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.87
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.86
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.83
PLN03046	460	D-glycerate 3-kinase; Provisional	98.83
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.81
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.81
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.8
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.8
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.8
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.65
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.65
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.64
PRK07429	327	phosphoribulokinase; Provisional	98.64
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.64
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.62
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.62
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.58
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.58
PRK09862	506	putative ATP-dependent protease; Provisional	98.56
PRK09825	176	idnK D-gluconate kinase; Provisional	98.54
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.53
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.53
PLN02348	395	phosphoribulokinase	98.52
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.5
TIGR00767	415	rho transcription termination factor Rho. Members	98.49
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	98.48
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.48
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.4
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.4
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.38
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.38
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.38
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.34
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.34
COG4240	300	Predicted kinase [General function prediction only	98.31
PRK08149	428	ATP synthase SpaL; Validated	98.29
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.27
PRK09099	441	type III secretion system ATPase; Provisional	98.26
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.26
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.24
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.23
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.22
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.2
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.18
PRK05922	434	type III secretion system ATPase; Validated	98.18
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.18
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.17
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.17
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.16
PRK00300	205	gmk guanylate kinase; Provisional	98.14
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.13
PRK10416	318	signal recognition particle-docking protein FtsY;	98.12
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.12
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.11
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.1
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.1
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.1
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.07
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.06
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.04
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.04
PRK06315	442	type III secretion system ATPase; Provisional	98.02
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.0
PRK06936	439	type III secretion system ATPase; Provisional	98.0
PRK15453	290	phosphoribulokinase; Provisional	98.0
PRK07667	193	uridine kinase; Provisional	97.99
PRK06820	440	type III secretion system ATPase; Validated	97.98
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
PRK04863	1486	mukB cell division protein MukB; Provisional	97.96
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.94
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.91
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.89
PRK01889	356	GTPase RsgA; Reviewed	97.89
PRK15494	339	era GTPase Era; Provisional	97.86
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.84
PRK03846	198	adenylylsulfate kinase; Provisional	97.83
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.81
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.81
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.81
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.79
PRK13695	174	putative NTPase; Provisional	97.77
PRK00889	175	adenylylsulfate kinase; Provisional	97.77
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.77
smart00382	148	AAA ATPases associated with a variety of cellular	97.77
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.76
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.75
COG3950	440	Predicted ATP-binding protein involved in virulenc	97.71
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.71
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	97.71

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.1e-29  Score=212.87  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      .+++++++++.|+...    +|+|+||+|.+||+++|+||||||||||||+|+|+++   |++|+ .++|+.+......+
T Consensus         2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~   74 (248)
T COG1116           2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI   74 (248)
T ss_pred             ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence            4689999999999855    9999999999999999999999999999999999999   99997 89998774333334


Q ss_pred             CC-CcccCcchhhhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEecCCeeee
Q 027060          155 GA-PWTFNPLLLLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIVDGNYLFL  213 (229)
Q Consensus       155 ~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlL  213 (229)
                      ++ .+.+...+++||++|+.++.........               .+..++.+.+++.|+++||     |+.+|++|+|
T Consensus        75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl  154 (248)
T COG1116          75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL  154 (248)
T ss_pred             EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence            43 4445556779999999998765321000               1334455555555555555     5666666666


Q ss_pred             ccc-------CHHHHHHHHhhh
Q 027060          214 DGG-------VWKDVSSMFDEK  228 (229)
Q Consensus       214 DEP-------~~~~l~~~l~~~  228 (229)
                      |||       ++.++.+.+...
T Consensus       155 DEPFgALDalTR~~lq~~l~~l  176 (248)
T COG1116         155 DEPFGALDALTREELQDELLRL  176 (248)
T ss_pred             cCCcchhhHHHHHHHHHHHHHH
Confidence            666       566666655544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=4e-28  Score=200.86  Aligned_cols=145  Identities=21%  Similarity=0.283  Sum_probs=117.9

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH------H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP------K  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~------~  148 (229)
                      ++|+++||+|+||+..    +|++||++|.+||+++|+||+|||||||||||++|..   |++|. .++|+++      .
T Consensus         1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~   73 (240)
T COG1126           1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL   73 (240)
T ss_pred             CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence            3699999999999876    9999999999999999999999999999999999999   99997 8888643      2


Q ss_pred             HHHhhcCC-CcccCcchhhhHHHHHHccccc----------------------------cCCCCCCCCCCchhhhhhccC
Q 027060          149 EAHARRGA-PWTFNPLLLLNCLKNLRNQGSV----------------------------YAPSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       149 ~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~----------------------------~~~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+...|+ .+.|+.++.+|++||+.++...                            |-...+.++.||++.++++.+
T Consensus        74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM  153 (240)
T COG1126          74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM  153 (240)
T ss_pred             HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC
Confidence            33444554 4455556669999999975321                            112345788899999999999


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++++++|+++.-||+.-..++.+.+..
T Consensus       154 ~P~vmLFDEPTSALDPElv~EVL~vm~~  181 (240)
T COG1126         154 DPKVMLFDEPTSALDPELVGEVLDVMKD  181 (240)
T ss_pred             CCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999877777776643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.95  E-value=2.2e-28  Score=217.58  Aligned_cols=135  Identities=20%  Similarity=0.316  Sum_probs=109.0

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HA  152 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~  152 (229)
                      ++.|+++||+|.|++..    +++|+||+|++||+++|+||||||||||||+|+|+..   |++|. .++|+++... ..
T Consensus         3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~   75 (352)
T COG3842           3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE   75 (352)
T ss_pred             CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            46799999999999765    8999999999999999999999999999999999999   99996 9999876442 33


Q ss_pred             hcCCCcccCcch---hhhHHHHHHccccccCCCCC----------------CCCCCchhhhhhccCCccE-----EEecC
Q 027060          153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD----------------HGVGDPVEDDILVGLQHKV-----VIVDG  208 (229)
Q Consensus       153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~rv-----Li~d~  208 (229)
                      ++++.++||.+.   .+||.+|+.|+.........                .+..++.+.+++.|+++||     |+.+|
T Consensus        76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P  155 (352)
T COG3842          76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP  155 (352)
T ss_pred             hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence            455666666654   49999999999884321111                2345666777787777776     88888


Q ss_pred             Ceeeeccc
Q 027060          209 NYLFLDGG  216 (229)
Q Consensus       209 ~~LlLDEP  216 (229)
                      .+|+||||
T Consensus       156 ~vLLLDEP  163 (352)
T COG3842         156 KVLLLDEP  163 (352)
T ss_pred             chhhhcCc
Confidence            88888888

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2.3e-28  Score=216.41  Aligned_cols=135  Identities=17%  Similarity=0.266  Sum_probs=107.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHA  152 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~  152 (229)
                      |..|+++||+|.|++..    +++++||+|+.||+++|+||||||||||||+|+|+..   |++|. .++|+++.. ...
T Consensus         1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~   73 (338)
T COG3839           1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE   73 (338)
T ss_pred             CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            45799999999999864    6899999999999999999999999999999999999   99997 899987655 345


Q ss_pred             hcCCCcccCcchh---hhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEecCC
Q 027060          153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIVDGN  209 (229)
Q Consensus       153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~d~~  209 (229)
                      .+++.++||.+.+   +||++|+.|+.....-..+               ....++.+.+++.|+++||     |+.+|.
T Consensus        74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~  153 (338)
T COG3839          74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK  153 (338)
T ss_pred             HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence            5777778877654   9999999999876532111               1234455566666666665     777777


Q ss_pred             eeeeccc
Q 027060          210 YLFLDGG  216 (229)
Q Consensus       210 ~LlLDEP  216 (229)
                      +++||||
T Consensus       154 v~L~DEP  160 (338)
T COG3839         154 VFLLDEP  160 (338)
T ss_pred             EEEecCc
Confidence            7777777

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.4e-26  Score=193.86  Aligned_cols=145  Identities=22%  Similarity=0.313  Sum_probs=119.4

Q ss_pred             CeEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060           76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----  148 (229)
Q Consensus        76 ~~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----  148 (229)
                      .+|+++||++.| ++..    +|++|||+|++||+++|||+||||||||||+|+|+..   |++|+ .++|.++.     
T Consensus         2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k   74 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK   74 (258)
T ss_pred             ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence            479999999999 4444    8999999999999999999999999999999999999   99997 88886532     


Q ss_pred             -HHHhhcCCCcccCcchh---hhHHHHHHccccccCC-----------------------------------CCCCCCCC
Q 027060          149 -EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP-----------------------------------SFDHGVGD  189 (229)
Q Consensus       149 -~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~-----------------------------------~~~~~~~~  189 (229)
                       ....+..+++.||.+.+   ++|++|+..+..-+.+                                   ..+.++.+
T Consensus        75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ  154 (258)
T COG3638          75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ  154 (258)
T ss_pred             HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH
Confidence             12334456666666654   9999999977543321                                   23467789


Q ss_pred             chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      |+..+.++.+++++++-|+|+.-||+++.+++++++..
T Consensus       155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~  192 (258)
T COG3638         155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD  192 (258)
T ss_pred             HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=4.6e-27  Score=198.67  Aligned_cols=142  Identities=19%  Similarity=0.270  Sum_probs=111.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----HHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-----KEA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-----~~~  150 (229)
                      ||+++||+|.|+++.    +++|+||+|++||+++|+|||||||||+||+|+++++   |++|. +++|+++     ...
T Consensus         1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L   73 (309)
T COG1125           1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL   73 (309)
T ss_pred             CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence            589999999999876    8999999999999999999999999999999999999   99997 9999863     345


Q ss_pred             HhhcCC-CcccCcchhhhHHHHHHccccccCC----------------CCC-CCCCCchhhhhhccCCccE-----EEec
Q 027060          151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAP----------------SFD-HGVGDPVEDDILVGLQHKV-----VIVD  207 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~----------------~~~-~~~~~~~~~~l~~~~~~rv-----Li~d  207 (229)
                      ++++|+ .+....++.+||.+|+.....+..-                ..+ ....+|.+.+++.|+++||     |..|
T Consensus        74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad  153 (309)
T COG1125          74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD  153 (309)
T ss_pred             HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence            666775 5566667779999999976544321                011 1345677777777777777     7777


Q ss_pred             CCeeeeccc-------CHHHHHHHH
Q 027060          208 GNYLFLDGG-------VWKDVSSMF  225 (229)
Q Consensus       208 ~~~LlLDEP-------~~~~l~~~l  225 (229)
                      |+++++|||       ++.++.+.|
T Consensus       154 P~ilLMDEPFgALDpI~R~~lQ~e~  178 (309)
T COG1125         154 PPILLMDEPFGALDPITRKQLQEEI  178 (309)
T ss_pred             CCeEeecCCccccChhhHHHHHHHH
Confidence            888888887       466665544

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=7.5e-27  Score=196.38  Aligned_cols=148  Identities=19%  Similarity=0.293  Sum_probs=108.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-------  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-------  148 (229)
                      +++++||+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+..   |++|. .++|.++.       
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~   77 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL   77 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence            47899999999865444668999999999999999999999999999999999999   99997 88886531       


Q ss_pred             HHHhhcCCCcccCcchh---hhHHHHHHccccccCCCC----------------CCCCCCchhhhhhccCCccE-----E
Q 027060          149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSF----------------DHGVGDPVEDDILVGLQHKV-----V  204 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~rv-----L  204 (229)
                      ...++..+++.||.+.+   +|+.||+.++..+.....                .....++.+.+++.|+++||     |
T Consensus        78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL  157 (226)
T COG1136          78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL  157 (226)
T ss_pred             HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH
Confidence            23445556777777765   999999997543321110                01112244556666666665     7


Q ss_pred             EecCCeeeeccc-------CHHHHHHHHhh
Q 027060          205 IVDGNYLFLDGG-------VWKDVSSMFDE  227 (229)
Q Consensus       205 i~d~~~LlLDEP-------~~~~l~~~l~~  227 (229)
                      +.+|+++++|||       +.+.+.+++..
T Consensus       158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~  187 (226)
T COG1136         158 INNPKIILADEPTGNLDSKTAKEVLELLRE  187 (226)
T ss_pred             hcCCCeEEeeCccccCChHHHHHHHHHHHH
Confidence            777777777777       46666666654

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.4e-26  Score=197.53  Aligned_cols=147  Identities=19%  Similarity=0.268  Sum_probs=104.8

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHH-
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAH-  151 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~-  151 (229)
                      ++++|+++|+++.|++..    +|+||||+|++|++++|+||||||||||+|+|+|+++   |.+|. .++|.+..... 
T Consensus         1 ~~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~   73 (254)
T COG1121           1 MMPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRK   73 (254)
T ss_pred             CCcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEcccccccccc
Confidence            356899999999999654    8999999999999999999999999999999999999   99997 88888765444 


Q ss_pred             -hhcCC-Cccc--CcchhhhHHHHHHccccccCCCCC-------------------CCCCCchhhhhhccCCccE-----
Q 027060          152 -ARRGA-PWTF--NPLLLLNCLKNLRNQGSVYAPSFD-------------------HGVGDPVEDDILVGLQHKV-----  203 (229)
Q Consensus       152 -~~~~~-~~~~--~~~~~~tv~e~l~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~rv-----  203 (229)
                       .++|+ |+..  +.....||+|-+.++...+...+.                   ....++...+++.|+++||     
T Consensus        74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA  153 (254)
T COG1121          74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA  153 (254)
T ss_pred             CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence             34553 4432  222338999999987554432221                   1122333344444444444     


Q ss_pred             EEecCCeeeeccc-------CHHHHHHHHhh
Q 027060          204 VIVDGNYLFLDGG-------VWKDVSSMFDE  227 (229)
Q Consensus       204 Li~d~~~LlLDEP-------~~~~l~~~l~~  227 (229)
                      |+.+|++++||||       ++..+.+++++
T Consensus       154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~  184 (254)
T COG1121         154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE  184 (254)
T ss_pred             hccCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            5556666666666       57888888765

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.93  E-value=2.4e-26  Score=196.78  Aligned_cols=143  Identities=19%  Similarity=0.228  Sum_probs=105.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      +++++||+++|+++.    +++|+||+|++|++++|+||||||||||||+|+|+++   |.+|. .++|+++..     .
T Consensus         2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel   74 (258)
T COG1120           2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL   74 (258)
T ss_pred             eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence            589999999999776    8999999999999999999999999999999999999   99997 999987543     3


Q ss_pred             HhhcCC-CcccCcchhhhHHHHHHccccccCCCCC-------------------CCCCCchhhhhhccCCccE-----EE
Q 027060          151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFD-------------------HGVGDPVEDDILVGLQHKV-----VI  205 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~rv-----Li  205 (229)
                      .+..++ ++.+..+..+||.|.+.++...+...|.                   ....++....++.|+++|+     |.
T Consensus        75 Ak~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa  154 (258)
T COG1120          75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA  154 (258)
T ss_pred             hhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh
Confidence            444553 6666666669999999998765543332                   0112233334444554444     56


Q ss_pred             ecCCeeeeccc-------CHHHHHHHHh
Q 027060          206 VDGNYLFLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       206 ~d~~~LlLDEP-------~~~~l~~~l~  226 (229)
                      .++++++||||       .+-++.+++.
T Consensus       155 Q~~~iLLLDEPTs~LDi~~Q~evl~ll~  182 (258)
T COG1120         155 QETPILLLDEPTSHLDIAHQIEVLELLR  182 (258)
T ss_pred             cCCCEEEeCCCccccCHHHHHHHHHHHH
Confidence            66666666666       4555555554

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=1.1e-26  Score=195.29  Aligned_cols=134  Identities=27%  Similarity=0.400  Sum_probs=104.3

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~  150 (229)
                      +++++++++|+||+..    +++||||+|++||+++||||||||||||+++|+|+++   |++|. .+.|+++.    ..
T Consensus         3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~   75 (250)
T COG0411           3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR   75 (250)
T ss_pred             ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence            5789999999999987    9999999999999999999999999999999999999   99997 89998753    34


Q ss_pred             HhhcCCCcccCcchh---hhHHHHHHcccccc--------CCCCC-------------------CCCCCchhhhhhccCC
Q 027060          151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVY--------APSFD-------------------HGVGDPVEDDILVGLQ  200 (229)
Q Consensus       151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~--------~~~~~-------------------~~~~~~~~~~l~~~~~  200 (229)
                      ..+.|+...||....   +||+||+..+....        .+.+.                   ....+.....++.+++
T Consensus        76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q  155 (250)
T COG0411          76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ  155 (250)
T ss_pred             HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence            567889888887654   99999999864321        11110                   0112333333444433


Q ss_pred             -----ccEEEecCCeeeeccc
Q 027060          201 -----HKVVIVDGNYLFLDGG  216 (229)
Q Consensus       201 -----~rvLi~d~~~LlLDEP  216 (229)
                           +|.|..+|.+|+||||
T Consensus       156 R~LEIArALa~~P~lLLLDEP  176 (250)
T COG0411         156 RRLEIARALATQPKLLLLDEP  176 (250)
T ss_pred             HHHHHHHHHhcCCCEEEecCc
Confidence                 4559999999999999

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.3e-26  Score=197.81  Aligned_cols=134  Identities=21%  Similarity=0.332  Sum_probs=109.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC---CHHH-HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ---DPKE-AH  151 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~---~~~~-~~  151 (229)
                      +|+++++++.|+...    +++||+++|+.||.++|+||||||||||||+|+|++.   |++|. .++|+   |... ..
T Consensus         2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~   74 (345)
T COG1118           2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV   74 (345)
T ss_pred             ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence            488999999999877    8999999999999999999999999999999999999   99997 88887   5444 33


Q ss_pred             hhcCCCcccCcchh---hhHHHHHHccccccCCCCC-----------------CCCCCchhhhhhccCCccE-----EEe
Q 027060          152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD-----------------HGVGDPVEDDILVGLQHKV-----VIV  206 (229)
Q Consensus       152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~rv-----Li~  206 (229)
                      +.+.+++.||.+.+   +||.+|+.|+........+                 .+..++.+..++.|+.+||     |..
T Consensus        75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~  154 (345)
T COG1118          75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV  154 (345)
T ss_pred             hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence            44567778877754   9999999999866522111                 2455666677777776666     999


Q ss_pred             cCCeeeecccC
Q 027060          207 DGNYLFLDGGV  217 (229)
Q Consensus       207 d~~~LlLDEP~  217 (229)
                      +|++|+||||.
T Consensus       155 eP~vLLLDEPf  165 (345)
T COG1118         155 EPKVLLLDEPF  165 (345)
T ss_pred             CCCeEeecCCc
Confidence            99999999994

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=6.3e-26  Score=186.01  Aligned_cols=145  Identities=17%  Similarity=0.233  Sum_probs=117.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH----HHHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP----KEAH  151 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~----~~~~  151 (229)
                      ||++.+++|+|++..   .+++||||+++.|+++||+|+|||||||+||+|++++.   |++|. +++|.+.    ...+
T Consensus         1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr   74 (245)
T COG4555           1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR   74 (245)
T ss_pred             CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence            589999999999843   37899999999999999999999999999999999999   99997 8998763    3445


Q ss_pred             hhcCCCc-ccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccE
Q 027060          152 ARRGAPW-TFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKV  203 (229)
Q Consensus       152 ~~~~~~~-~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rv  203 (229)
                      +.+|+.. .-..+.-+|+.||+.|...++.                           ..|+.++++++..+.++..++++
T Consensus        75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i  154 (245)
T COG4555          75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI  154 (245)
T ss_pred             hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence            5666633 3333445999999998765442                           23567888888888888888888


Q ss_pred             EEecCCeeeecccCHHHHHHHHhh
Q 027060          204 VIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       204 Li~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|+|+.+||--..+.+++++..
T Consensus       155 ~vlDEP~sGLDi~~~r~~~dfi~q  178 (245)
T COG4555         155 LVLDEPTSGLDIRTRRKFHDFIKQ  178 (245)
T ss_pred             EEEcCCCCCccHHHHHHHHHHHHH
Confidence            888888888888888888888753

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=7.5e-26  Score=198.64  Aligned_cols=146  Identities=23%  Similarity=0.287  Sum_probs=108.6

Q ss_pred             CCeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060           75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----  148 (229)
                      +.+++++||+|.|+ +..    +|+||||+|++|+++||+||||||||||+|+|+|++.   |++|. .++|.++.    
T Consensus         2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~   74 (293)
T COG1131           2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA   74 (293)
T ss_pred             CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence            45789999999999 565    8999999999999999999999999999999999999   99997 89997643    


Q ss_pred             HHHhhcCC-CcccCcchhhhHHHHHHccccccCCC---------------------------CCCCCCCchhhhhhccCC
Q 027060          149 EAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPS---------------------------FDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       149 ~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~---------------------------~~~~~~~~~~~~l~~~~~  200 (229)
                      ..+.++|+ ++.+..++.+|+.|++.+...++...                           ++.++.+++..+.++..+
T Consensus        75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~  154 (293)
T COG1131          75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD  154 (293)
T ss_pred             HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence            33455664 66666667799999999866555321                           223444444444444455


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++++|+|+.+||.-.+.++++++..
T Consensus       155 P~lliLDEPt~GLDp~~~~~~~~~l~~  181 (293)
T COG1131         155 PELLILDEPTSGLDPESRREIWELLRE  181 (293)
T ss_pred             CCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence            555555555555555567777777654

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.9e-25  Score=193.40  Aligned_cols=148  Identities=18%  Similarity=0.208  Sum_probs=119.4

Q ss_pred             eEEEeeeeEEcCcc-ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------
Q 027060           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~-~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------  148 (229)
                      ||++++|+|.|... ...+.+++||||+|++||++||||.+|||||||+|+|++|..   |++|. .++|+++.      
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~   77 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE   77 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence            58999999999873 234669999999999999999999999999999999999999   99997 99997532      


Q ss_pred             HHHhhcCCCcccCcchh---hhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhcc
Q 027060          149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVG  198 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~  198 (229)
                      ....|+.+++.||.+.+   .||++|++|+..+...                           ..+.+++|++..++++.
T Consensus        78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa  157 (339)
T COG1135          78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA  157 (339)
T ss_pred             HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence            12345556777777765   7899999998654321                           23467788888888888


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++++|+.|+.+.-||+.+.+.+.+++..
T Consensus       158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~  186 (339)
T COG1135         158 NNPKILLCDEATSALDPETTQSILELLKD  186 (339)
T ss_pred             cCCCEEEecCccccCChHHHHHHHHHHHH
Confidence            88888888888888888888888887754

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=4.6e-26  Score=190.23  Aligned_cols=135  Identities=21%  Similarity=0.319  Sum_probs=104.5

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~  150 (229)
                      ++++++||+..|+...    +|++|||++++||+++|+|+||+|||||||+|+|+.+   +.+|. .++|+++.    ..
T Consensus         2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~   74 (237)
T COG0410           2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE   74 (237)
T ss_pred             CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence            5799999999999866    9999999999999999999999999999999999999   99997 89999753    44


Q ss_pred             HhhcCCCcccCc---chhhhHHHHHHccccccCC-C---------CC-----CCCCCchhhhhhccCC-----ccEEEec
Q 027060          151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-S---------FD-----HGVGDPVEDDILVGLQ-----HKVVIVD  207 (229)
Q Consensus       151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-~---------~~-----~~~~~~~~~~l~~~~~-----~rvLi~d  207 (229)
                      +.+.|+.++++.   ++.+||.|||..+...... .         |+     +...++..+.++.|++     +|.|+.+
T Consensus        75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~  154 (237)
T COG0410          75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR  154 (237)
T ss_pred             HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence            667787776655   4459999999987554321 0         00     1112222334444443     5669999


Q ss_pred             CCeeeecccC
Q 027060          208 GNYLFLDGGV  217 (229)
Q Consensus       208 ~~~LlLDEP~  217 (229)
                      |.+|+||||+
T Consensus       155 PklLLLDEPs  164 (237)
T COG0410         155 PKLLLLDEPS  164 (237)
T ss_pred             CCEEEecCCc
Confidence            9999999996

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=2.7e-25  Score=186.56  Aligned_cols=145  Identities=18%  Similarity=0.214  Sum_probs=107.3

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      .++|++++|+++|+++.    +++||||+|++||+++|+||+|||||||||+|.|+++   |++|+ .++|+++..    
T Consensus         6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~   78 (263)
T COG1127           6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE   78 (263)
T ss_pred             cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence            56899999999999987    9999999999999999999999999999999999999   99997 999987422    


Q ss_pred             --HHhhcCCCcccCcch---hhhHHHHHHccccccCC-----------------------------CCCCCCCCchhhhh
Q 027060          150 --AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP-----------------------------SFDHGVGDPVEDDI  195 (229)
Q Consensus       150 --~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~l  195 (229)
                        ...+..++..||.-.   .+||+||+.++.+-+..                             ..+.++..|++.++
T Consensus        79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR  158 (263)
T COG1127          79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR  158 (263)
T ss_pred             HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence              122334555555544   38999999987543321                             12345555555555


Q ss_pred             hccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      ++...+.+|++|||+.+||+-....+.+++.
T Consensus       159 AialdPell~~DEPtsGLDPI~a~~~~~LI~  189 (263)
T COG1127         159 AIALDPELLFLDEPTSGLDPISAGVIDELIR  189 (263)
T ss_pred             HHhcCCCEEEecCCCCCCCcchHHHHHHHHH
Confidence            5555566666666666666656666666654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.92  E-value=1.9e-25  Score=181.60  Aligned_cols=146  Identities=20%  Similarity=0.216  Sum_probs=110.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------  149 (229)
                      ||+++||+|.|++..   .+|+||||+|++||++-|+||+|||||||+|+|.+..+   |+.|. .++|+++..      
T Consensus         1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i   74 (223)
T COG2884           1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI   74 (223)
T ss_pred             CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence            589999999998753   38999999999999999999999999999999999999   99997 888886432      


Q ss_pred             HHhhcCCCcccCcchh---hhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccC
Q 027060          150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~  199 (229)
                      ...|+.++.+||++.+   .||+||++++..+...                           ..+.+..|++..+.++..
T Consensus        75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~  154 (223)
T COG2884          75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN  154 (223)
T ss_pred             chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence            1234445556666654   8999999998664321                           233455566666666666


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      ++.+|+-|+|+--||.+...+++++|.+.
T Consensus       155 ~P~vLlADEPTGNLDp~~s~~im~lfeei  183 (223)
T COG2884         155 QPAVLLADEPTGNLDPDLSWEIMRLFEEI  183 (223)
T ss_pred             CCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence            66666666666666666677888888753

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.7e-24  Score=179.00  Aligned_cols=146  Identities=18%  Similarity=0.216  Sum_probs=110.9

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-----ce-EecCCC--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS-SFDSQD--  146 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-----G~-~~~g~~--  146 (229)
                      .+.++++||++.|+++.    +|++||++|+++.+++||||+|||||||||+++.+..   ...     |+ .++|++  
T Consensus         5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ni~   77 (253)
T COG1117           5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGKNIY   77 (253)
T ss_pred             cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCeecc
Confidence            45799999999999877    9999999999999999999999999999999999876   443     65 777775  


Q ss_pred             -----HHHHHhhcCCCcccCcchhhhHHHHHHccccccCCC-------------------------------CCCCCCCc
Q 027060          147 -----PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPS-------------------------------FDHGVGDP  190 (229)
Q Consensus       147 -----~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-------------------------------~~~~~~~~  190 (229)
                           +...++++|+.++-.++..++++||+.++.+++...                               .+.++.||
T Consensus        78 ~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR  157 (253)
T COG1117          78 DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR  157 (253)
T ss_pred             CCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence                 344566667655444444599999999987655321                               22345566


Q ss_pred             hhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       191 ~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..++++..+++||++|+|+..||+-...++.+++.+
T Consensus       158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~e  194 (253)
T COG1117         158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE  194 (253)
T ss_pred             HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHH
Confidence            6666666666666666777766766678888888765

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.91  E-value=5.5e-25  Score=194.23  Aligned_cols=146  Identities=20%  Similarity=0.198  Sum_probs=102.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      .++|+++||+|.|++..    +|+|+||+|++||++||+||||||||||+++|+|+++   |++|. .++|.++..    
T Consensus         5 ~~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~   77 (306)
T PRK13537          5 VAPIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH   77 (306)
T ss_pred             CceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence            45799999999998754    8999999999999999999999999999999999999   99997 889886432    


Q ss_pred             HHhhcCC-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCc
Q 027060          150 AHARRGA-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQH  201 (229)
Q Consensus       150 ~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~  201 (229)
                      .+.++++ ++.+..+..+|+.||+.+....+.                           ..++.++.+++..+.++..++
T Consensus        78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P  157 (306)
T PRK13537         78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP  157 (306)
T ss_pred             HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence            2233443 333343444899999986432221                           012233444444444455555


Q ss_pred             cEEEecCCeeeecccCHHHHHHHHhh
Q 027060          202 KVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       202 rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++|++|+|+..||...++.+++++..
T Consensus       158 ~lllLDEPt~gLD~~~~~~l~~~l~~  183 (306)
T PRK13537        158 DVLVLDEPTTGLDPQARHLMWERLRS  183 (306)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            55555555555555567777777654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.91  E-value=7.8e-25  Score=195.86  Aligned_cols=147  Identities=18%  Similarity=0.161  Sum_probs=105.1

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--H
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--A  150 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~  150 (229)
                      .+++|+++||+|.|++..    +|+|+||+|.+|+++||+||||||||||+++|+|+++   |++|. .++|.++..  .
T Consensus        38 ~~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~  110 (340)
T PRK13536         38 STVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARAR  110 (340)
T ss_pred             CceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchH
Confidence            355899999999998765    8999999999999999999999999999999999999   99997 889976432  1


Q ss_pred             HhhcCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      ..+..+++.+|.   +..+|+.+|+.+....+.                           ..++.++.+++..+.++..+
T Consensus       111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~  190 (340)
T PRK13536        111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIND  190 (340)
T ss_pred             HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence            223334444443   344789999975322211                           01223444555555555556


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|+|+..||...++.+++++..
T Consensus       191 P~lLiLDEPt~gLD~~~r~~l~~~l~~  217 (340)
T PRK13536        191 PQLLILDEPTTGLDPHARHLIWERLRS  217 (340)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            666666666666666678888887754

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.90  E-value=2.9e-24  Score=193.04  Aligned_cols=146  Identities=16%  Similarity=0.189  Sum_probs=102.8

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHA  152 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~  152 (229)
                      +.+|+++||++.|++..    +|+++||+|++||+++|+|||||||||||++|+|+++   |++|. .++|+++.. ...
T Consensus         2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   74 (353)
T TIGR03265         2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ   74 (353)
T ss_pred             CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            45799999999998754    7999999999999999999999999999999999999   99997 888876432 112


Q ss_pred             hcCCCcccCcch---hhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCcc
Q 027060          153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      ++.+.+.||.+.   .+|+.+|+.++......                           .++.++.+++..+.++...++
T Consensus        75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~  154 (353)
T TIGR03265        75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG  154 (353)
T ss_pred             HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            344555555543   48999999986432110                           112233444444444444555


Q ss_pred             EEEecCCeeeecccCHHHHHHHHhh
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|+|+..||...+.++++.+..
T Consensus       155 llLLDEP~s~LD~~~r~~l~~~L~~  179 (353)
T TIGR03265       155 LLLLDEPLSALDARVREHLRTEIRQ  179 (353)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            5555555555555567777776653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.4e-24  Score=192.79  Aligned_cols=96  Identities=18%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             CCeEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-H
Q 027060           75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-H  151 (229)
Q Consensus        75 ~~~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~  151 (229)
                      |.+|+++|+++.| ++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++... .
T Consensus         1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~   73 (356)
T PRK11650          1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP   73 (356)
T ss_pred             CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence            3479999999999 6544    8999999999999999999999999999999999999   99997 8888764221 1


Q ss_pred             hhcCCCcccCcc---hhhhHHHHHHcccc
Q 027060          152 ARRGAPWTFNPL---LLLNCLKNLRNQGS  177 (229)
Q Consensus       152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~  177 (229)
                      .++.+.+.||.+   +.+|+.+|+.++..
T Consensus        74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~  102 (356)
T PRK11650         74 ADRDIAMVFQNYALYPHMSVRENMAYGLK  102 (356)
T ss_pred             HHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence            224555555554   34899999998654

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.4e-24  Score=192.44  Aligned_cols=96  Identities=18%  Similarity=0.212  Sum_probs=78.5

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HA  152 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~  152 (229)
                      +++|+++||++.|++..    +|+|+||+|.+||+++|+|||||||||||++|+|+++   |++|. .++|+++... ..
T Consensus         4 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~   76 (351)
T PRK11432          4 KNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSIQ   76 (351)
T ss_pred             CcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            55899999999998754    7999999999999999999999999999999999999   99997 8888764321 22


Q ss_pred             hcCCCcccCcc---hhhhHHHHHHcccc
Q 027060          153 RRGAPWTFNPL---LLLNCLKNLRNQGS  177 (229)
Q Consensus       153 ~~~~~~~~~~~---~~~tv~e~l~~~~~  177 (229)
                      ++.+.+.||.+   +.+|+.+|+.++..
T Consensus        77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~  104 (351)
T PRK11432         77 QRDICMVFQSYALFPHMSLGENVGYGLK  104 (351)
T ss_pred             HCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence            34455555554   34899999998654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.90  E-value=9e-24  Score=192.11  Aligned_cols=136  Identities=23%  Similarity=0.273  Sum_probs=107.9

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH----HH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP----KE  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~----~~  149 (229)
                      .+.+++++++|.|++..    ++++|||+|.+||+.+|+|.||||||||+++|.|+++   |++|+ +++|+.+    ..
T Consensus         2 ~~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~   74 (501)
T COG3845           2 EPALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR   74 (501)
T ss_pred             CceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence            46799999999999765    9999999999999999999999999999999999999   99997 9999853    23


Q ss_pred             HHhhcCCCcccCcchh---hhHHHHHHccccccC-CCCC----------------C-CCCCchhhhhhccCCccE-----
Q 027060          150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PSFD----------------H-GVGDPVEDDILVGLQHKV-----  203 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~~~----------------~-~~~~~~~~~l~~~~~~rv-----  203 (229)
                      ...+.|++++||.+.+   +||.||+.++..... ...+                . -..+.....+++|+++||     
T Consensus        75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa  154 (501)
T COG3845          75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA  154 (501)
T ss_pred             HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence            4567788888888866   999999998864321 1111                0 012333455667777777     


Q ss_pred             EEecCCeeeecccC
Q 027060          204 VIVDGNYLFLDGGV  217 (229)
Q Consensus       204 Li~d~~~LlLDEP~  217 (229)
                      |..++++|+||||+
T Consensus       155 Lyr~a~iLILDEPT  168 (501)
T COG3845         155 LYRGARLLILDEPT  168 (501)
T ss_pred             HhcCCCEEEEcCCc
Confidence            78888888888884

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.90  E-value=7.7e-24  Score=178.11  Aligned_cols=150  Identities=17%  Similarity=0.208  Sum_probs=106.0

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---  150 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---  150 (229)
                      +++|+++|+++.|+.+.....++++|||+|.+||++||+|++|||||||.|+|+|+.+   |++|. .++|......   
T Consensus         1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~   77 (252)
T COG1124           1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA   77 (252)
T ss_pred             CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence            3579999999999887555568999999999999999999999999999999999999   99997 8999754321   


Q ss_pred             -HhhcCCCcccCcch-----hhhHHHHHHccccccCC--------------CCCCCCCCchhhhhhccCCccE-----EE
Q 027060          151 -HARRGAPWTFNPLL-----LLNCLKNLRNQGSVYAP--------------SFDHGVGDPVEDDILVGLQHKV-----VI  205 (229)
Q Consensus       151 -~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~rv-----Li  205 (229)
                       .....+.++||++.     ..||.+.|..+...+.-              ....+..++.+.+++.|+.+||     |+
T Consensus        78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~  157 (252)
T COG1124          78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI  157 (252)
T ss_pred             hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence             23344566777653     37777777765543110              0112233444445555555444     66


Q ss_pred             ecCCeeeeccc-------CHHHHHHHHhh
Q 027060          206 VDGNYLFLDGG-------VWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP-------~~~~l~~~l~~  227 (229)
                      .+|.+|+||||       .+.++.+++.+
T Consensus       158 ~~PklLIlDEptSaLD~siQa~IlnlL~~  186 (252)
T COG1124         158 PEPKLLILDEPTSALDVSVQAQILNLLLE  186 (252)
T ss_pred             cCCCEEEecCchhhhcHHHHHHHHHHHHH
Confidence            66666666666       47777777654

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.90  E-value=4.7e-24  Score=190.95  Aligned_cols=148  Identities=21%  Similarity=0.236  Sum_probs=99.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      ||+++||++.|++......+|+|+||+|++||++||+|+||||||||+|+|+|+++   |++|. .++|+++..     .
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l   77 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL   77 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence            48999999999642112348999999999999999999999999999999999999   99997 888876421     1


Q ss_pred             -HhhcCCCcccCcch---hhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccC
Q 027060          151 -HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 -~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~  199 (229)
                       ..+..+.+.||.+.   ..|+.+|+.++......                           .++.++.+++..+.++..
T Consensus        78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~  157 (343)
T TIGR02314        78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS  157 (343)
T ss_pred             HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence             12345555555543   37999999875432110                           112233444444444444


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|+++..||..+...+.+++..
T Consensus       158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~  185 (343)
T TIGR02314       158 NPKVLLCDEATSALDPATTQSILELLKE  185 (343)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            4455555555555555567777776654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=7.2e-24  Score=178.34  Aligned_cols=143  Identities=16%  Similarity=0.191  Sum_probs=112.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~~~  154 (229)
                      .+++++|+|+|+++.    +++|+||++++|+++|++|+|||||||++|+|.|++.   |++|. .|+|.++.. ...++
T Consensus         2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI   74 (300)
T ss_pred             ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence            489999999999987    9999999999999999999999999999999999999   99997 999988654 45567


Q ss_pred             CC-CcccCcchhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCccEEEe
Q 027060          155 GA-PWTFNPLLLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHKVVIV  206 (229)
Q Consensus       155 ~~-~~~~~~~~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~rvLi~  206 (229)
                      |+ |..-..++-+||.|.+.|...++.-                           ..++++.|++...-++...+.++|+
T Consensus        75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL  154 (300)
T COG4152          75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL  154 (300)
T ss_pred             ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence            75 5555566669999999986554321                           1224455555555556667777777


Q ss_pred             cCCeeeecccCHHHHHHHHh
Q 027060          207 DGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       207 d~~~LlLDEP~~~~l~~~l~  226 (229)
                      |+|+.+||+-+.+-+.+.+.
T Consensus       155 DEPFSGLDPVN~elLk~~I~  174 (300)
T COG4152         155 DEPFSGLDPVNVELLKDAIF  174 (300)
T ss_pred             cCCccCCChhhHHHHHHHHH
Confidence            77777777777777766554

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.90  E-value=5.2e-24  Score=176.23  Aligned_cols=146  Identities=14%  Similarity=0.114  Sum_probs=114.7

Q ss_pred             eEEEeeeeEEcCccc--cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-EecCCCHHHHH
Q 027060           77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQDPKEAH  151 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~--~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~g~~~~~~~  151 (229)
                      .|+++||++.|++..  ....+|+++||+|.+|++++|+||||||||||+++|+|++  +   |++|. .++|+++....
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~   79 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS   79 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence            589999999997510  0112899999999999999999999999999999999999  9   99997 88888754322


Q ss_pred             hhcCCCcccCcc---hhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          152 ARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+..+.+.++..   ..+++.+|+.+.....  .++.++.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~  156 (194)
T cd03213          80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR  156 (194)
T ss_pred             hhheEEEccCcccCCCCCcHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            223344444433   3379999998754332  5677888888888888888999999999999999889999888764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.90  E-value=4.3e-24  Score=174.31  Aligned_cols=136  Identities=23%  Similarity=0.329  Sum_probs=111.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----HH
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----AH  151 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~~  151 (229)
                      |+++|+++.|++..    +++++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..     ..
T Consensus         1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (178)
T cd03229           1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP   73 (178)
T ss_pred             CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence            47899999998654    7999999999999999999999999999999999999   99997 888865421     12


Q ss_pred             hhcCCCcccCcc---hhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          152 ARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+..+.+.++.+   ...++.+|+.+.       ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus        74 ~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~  145 (178)
T cd03229          74 LRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS  145 (178)
T ss_pred             HhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            233444444443   236899998764       677888998889999999999999999999999999998888764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.90  E-value=9.8e-24  Score=172.78  Aligned_cols=136  Identities=21%  Similarity=0.282  Sum_probs=111.9

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      ++|+++|+++.|        +++++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..    .
T Consensus         3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   71 (182)
T cd03215           3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD   71 (182)
T ss_pred             cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence            479999999998        5889999999999999999999999999999999999   99997 888875421    1


Q ss_pred             HhhcCCCcccCc------chhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHH
Q 027060          151 HARRGAPWTFNP------LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  224 (229)
Q Consensus       151 ~~~~~~~~~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~  224 (229)
                      ..+..+.+.+|.      ...+++.+|+.+...     ++.++.+++..+.++..+++++++|+|+..||...++.+.++
T Consensus        72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~  146 (182)
T cd03215          72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL  146 (182)
T ss_pred             HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence            223344555543      223799999987532     677888898888888889999999999999999999998888


Q ss_pred             Hhh
Q 027060          225 FDE  227 (229)
Q Consensus       225 l~~  227 (229)
                      +..
T Consensus       147 l~~  149 (182)
T cd03215         147 IRE  149 (182)
T ss_pred             HHH
Confidence            764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.90  E-value=6.3e-24  Score=176.72  Aligned_cols=142  Identities=18%  Similarity=0.169  Sum_probs=97.9

Q ss_pred             EEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060           79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA  156 (229)
Q Consensus        79 ~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~  156 (229)
                      +++|+++.|++ ..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++.....+..+
T Consensus         1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i   73 (205)
T cd03226           1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI   73 (205)
T ss_pred             CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence            36899999976 43    8999999999999999999999999999999999999   99997 8888876433333345


Q ss_pred             CcccCcc----hhhhHHHHHHccccccCC-----------------------CCCCCCCCchhhhhhccCCccEEEecCC
Q 027060          157 PWTFNPL----LLLNCLKNLRNQGSVYAP-----------------------SFDHGVGDPVEDDILVGLQHKVVIVDGN  209 (229)
Q Consensus       157 ~~~~~~~----~~~tv~e~l~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~rvLi~d~~  209 (229)
                      .+.+|.+    ...++.+|+.++......                       .++.++.+++..+.++..+++++++|+|
T Consensus        74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  153 (205)
T cd03226          74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP  153 (205)
T ss_pred             EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            5555553    236999999764321100                       1122334444444444445555555555


Q ss_pred             eeeecccCHHHHHHHHhh
Q 027060          210 YLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       210 ~LlLDEP~~~~l~~~l~~  227 (229)
                      +..||...++.+.+++..
T Consensus       154 t~~LD~~~~~~l~~~l~~  171 (205)
T cd03226         154 TSGLDYKNMERVGELIRE  171 (205)
T ss_pred             CccCCHHHHHHHHHHHHH
Confidence            555555567777777654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.90  E-value=6.4e-24  Score=178.02  Aligned_cols=95  Identities=21%  Similarity=0.352  Sum_probs=71.7

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH------
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA------  150 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~------  150 (229)
                      |+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++...      
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   77 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA   77 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence            4789999999762100128999999999999999999999999999999999999   99997 8888765321      


Q ss_pred             -HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          151 -HARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       151 -~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                       ..+..+.+.+|..   ..+|+.+|+.++
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  106 (218)
T cd03255          78 AFRRRHIGFVFQSFNLLPDLTALENVELP  106 (218)
T ss_pred             HHHhhcEEEEeeccccCCCCcHHHHHHHH
Confidence             1123344444433   336899998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.90  E-value=6.9e-24  Score=179.96  Aligned_cols=91  Identities=23%  Similarity=0.334  Sum_probs=72.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------H
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------A  150 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------~  150 (229)
                      |+++|+++.|++..    +|+|+||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|.++..      .
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (235)
T cd03261           1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY   73 (235)
T ss_pred             CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence            47899999998654    8999999999999999999999999999999999999   99997 888865321      1


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ..+..+.+.+|..   ..+|+.+|+.++
T Consensus        74 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~  101 (235)
T cd03261          74 RLRRRMGMLFQSGALFDSLTVFENVAFP  101 (235)
T ss_pred             HHhcceEEEccCcccCCCCcHHHHHHHH
Confidence            2233444444443   337999999764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.90  E-value=8.9e-24  Score=177.04  Aligned_cols=94  Identities=20%  Similarity=0.234  Sum_probs=73.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------  149 (229)
                      +|+++|+++.|++..  ..+|+++||+|++||+++|+||||||||||+++|+|+++   |++|. .++|+++..      
T Consensus         1 ~l~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   75 (216)
T TIGR00960         1 MIRFEQVSKAYPGGH--QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI   75 (216)
T ss_pred             CeEEEEEEEEecCCC--eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence            488999999996421  127899999999999999999999999999999999999   99997 888876532      


Q ss_pred             HHhhcCCCcccCcch---hhhHHHHHHcc
Q 027060          150 AHARRGAPWTFNPLL---LLNCLKNLRNQ  175 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~  175 (229)
                      ...+..+.+.+|.+.   .+|+.+|+.++
T Consensus        76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  104 (216)
T TIGR00960        76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFP  104 (216)
T ss_pred             HHHHHhceEEecCccccccccHHHHHHHH
Confidence            112234444454432   37999999764

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=3.3e-24  Score=175.35  Aligned_cols=149  Identities=17%  Similarity=0.239  Sum_probs=110.8

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR  153 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~  153 (229)
                      |.++.+++++..|.++.  ..+|+|+|++|.+||.++++||+||||||||++++|+..   |..|. .++|..+...-..
T Consensus         1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae   75 (259)
T COG4525           1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE   75 (259)
T ss_pred             CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence            35688999999998864  347999999999999999999999999999999999999   99997 8888877655556


Q ss_pred             cCC-CcccCcchhhhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEecCCeee
Q 027060          154 RGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIVDGNYLF  212 (229)
Q Consensus       154 ~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~Ll  212 (229)
                      +|+ .+.....+++++.+|+.|+..+..-...               .+..++..-.++.|+.+|+     |..||.+|+
T Consensus        76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll  155 (259)
T COG4525          76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL  155 (259)
T ss_pred             ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe
Confidence            665 4444556789999999998765432110               1222333444555555544     777888888


Q ss_pred             eccc-------CHHHHHHHHhhh
Q 027060          213 LDGG-------VWKDVSSMFDEK  228 (229)
Q Consensus       213 LDEP-------~~~~l~~~l~~~  228 (229)
                      ||||       +++++.+++-..
T Consensus       156 LDEPfgAlDa~tRe~mQelLldl  178 (259)
T COG4525         156 LDEPFGALDALTREQMQELLLDL  178 (259)
T ss_pred             ecCchhhHHHHHHHHHHHHHHHH
Confidence            8888       566666665443

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.89  E-value=9.3e-24  Score=171.58  Aligned_cols=134  Identities=21%  Similarity=0.289  Sum_probs=110.0

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhc
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARR  154 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~  154 (229)
                      |+++|+++.|++..    +|+++||++.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..  ...+.
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (173)
T cd03230           1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR   73 (173)
T ss_pred             CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence            46899999997643    7999999999999999999999999999999999999   99997 888875422  12223


Q ss_pred             CCCcccCcc---hhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.+.+|..   ..+++.+|+.         ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus        74 ~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  140 (173)
T cd03230          74 RIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE  140 (173)
T ss_pred             cEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            344444443   2369999986         667888888888889999999999999999999999999888764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=3.4e-23  Score=176.21  Aligned_cols=146  Identities=16%  Similarity=0.145  Sum_probs=108.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~  150 (229)
                      ++++++++++.|++.   ..+|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.+..    ..
T Consensus         2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~   75 (235)
T COG1122           2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL   75 (235)
T ss_pred             ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence            479999999999875   128999999999999999999999999999999999999   99997 88887633    22


Q ss_pred             HhhcCCCcccCcchh----hhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          151 HARRGAPWTFNPLLL----LNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 ~~~~~~~~~~~~~~~----~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+..++++||++..    -||.+.+.|+.....                           ...+.+++++++.+-.+.+
T Consensus        76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~  155 (235)
T COG1122          76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM  155 (235)
T ss_pred             HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc
Confidence            233445556655532    789999998754321                           1123455666666666666


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|||+..||...++++.+++..
T Consensus       156 ~P~iliLDEPta~LD~~~~~~l~~~l~~  183 (235)
T COG1122         156 GPEILLLDEPTAGLDPKGRRELLELLKK  183 (235)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            6666777777777776678888877754

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.89  E-value=9.2e-24  Score=191.13  Aligned_cols=97  Identities=23%  Similarity=0.309  Sum_probs=79.0

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-H
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-H  151 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~  151 (229)
                      ++++|+++|+++.|++..    +|+++||+|.+||+++|+|||||||||||++|+|+++   |++|. .++|+++... .
T Consensus        11 ~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~   83 (375)
T PRK09452         11 LSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA   83 (375)
T ss_pred             CCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            556799999999998754    7999999999999999999999999999999999999   99997 8888764321 1


Q ss_pred             hhcCCCcccCcc---hhhhHHHHHHcccc
Q 027060          152 ARRGAPWTFNPL---LLLNCLKNLRNQGS  177 (229)
Q Consensus       152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~  177 (229)
                      .++++.+.||.+   +.+|+.+|+.++..
T Consensus        84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~  112 (375)
T PRK09452         84 ENRHVNTVFQSYALFPHMTVFENVAFGLR  112 (375)
T ss_pred             HHCCEEEEecCcccCCCCCHHHHHHHHHh
Confidence            234455555554   34799999998643

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.89  E-value=1.4e-23  Score=181.10  Aligned_cols=143  Identities=15%  Similarity=0.142  Sum_probs=97.9

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      ++|+++|+++.|++..    +|+++||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|.++.....  
T Consensus        11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~--   81 (257)
T PRK11247         11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEARE--   81 (257)
T ss_pred             CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhC--
Confidence            5799999999998754    8999999999999999999999999999999999999   99997 777766543322  


Q ss_pred             CCCcccCc---chhhhHHHHHHcccccc---------------------CCCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060          155 GAPWTFNP---LLLLNCLKNLRNQGSVY---------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNY  210 (229)
Q Consensus       155 ~~~~~~~~---~~~~tv~e~l~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~  210 (229)
                      .+.+.+|.   +..+++.+|+.++....                     ...++.++.+++..+.++..+++++++|+|+
T Consensus        82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt  161 (257)
T PRK11247         82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL  161 (257)
T ss_pred             ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            33333333   23378999987642110                     0012233344444444444455555555555


Q ss_pred             eeecccCHHHHHHHHhh
Q 027060          211 LFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       211 LlLDEP~~~~l~~~l~~  227 (229)
                      ..||...+..+.+++..
T Consensus       162 ~~LD~~~~~~l~~~L~~  178 (257)
T PRK11247        162 GALDALTRIEMQDLIES  178 (257)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            55555567777776643

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.89  E-value=1.7e-23  Score=169.70  Aligned_cols=135  Identities=16%  Similarity=0.194  Sum_probs=106.3

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|++..  ..+++++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..   ...+
T Consensus         1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   75 (171)
T cd03228           1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR   75 (171)
T ss_pred             CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH
Confidence            47899999998641  127999999999999999999999999999999999999   99997 888875432   1112


Q ss_pred             cCCCcccCcch--hhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          154 RGAPWTFNPLL--LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       154 ~~~~~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+.+.++...  ..++.||+          ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus        76 ~~i~~~~~~~~~~~~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~  141 (171)
T cd03228          76 KNIAYVPQDPFLFSGTIRENI----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA  141 (171)
T ss_pred             hhEEEEcCCchhccchHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            23333333322  25888887          666778888888888888999999999999999888888888764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.89  E-value=1.8e-23  Score=190.53  Aligned_cols=95  Identities=18%  Similarity=0.287  Sum_probs=75.7

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A  150 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~  150 (229)
                      |++|+++||++.|++..    +|+++||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|+++..   .
T Consensus         1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~   73 (402)
T PRK09536          1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR   73 (402)
T ss_pred             CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence            35799999999998765    8999999999999999999999999999999999999   99997 888875421   1


Q ss_pred             HhhcCCCcccCc---chhhhHHHHHHccc
Q 027060          151 HARRGAPWTFNP---LLLLNCLKNLRNQG  176 (229)
Q Consensus       151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~  176 (229)
                      ..+..+.+.+|.   +..+++.+|+.++.
T Consensus        74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~  102 (402)
T PRK09536         74 AASRRVASVPQDTSLSFEFDVRQVVEMGR  102 (402)
T ss_pred             HHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence            122233333333   34489999998754

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.89  E-value=1.9e-23  Score=172.54  Aligned_cols=145  Identities=12%  Similarity=0.129  Sum_probs=113.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-EecCCCHHHHHhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQDPKEAHAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~g~~~~~~~~~  153 (229)
                      .|+++|+++.|++......+|+++||+|.+|++++|+|+||||||||+++|+|+.  +   |++|+ .++|+++.. ..+
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~~-~~~   78 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDK-NFQ   78 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehHH-Hhh
Confidence            6899999999975211112799999999999999999999999999999999975  4   78997 888887642 222


Q ss_pred             cCCCcccCc---chhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          154 RGAPWTFNP---LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       154 ~~~~~~~~~---~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+.+.+|.   +..+|+.+|+.+.....  .++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~  153 (192)
T cd03232          79 RSTGYVEQQDVHSPNLTVREALRFSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK  153 (192)
T ss_pred             hceEEecccCccccCCcHHHHHHHHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            234344443   33379999998754322  5777888888888888889999999999999999988888888764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.89  E-value=1.6e-23  Score=174.72  Aligned_cols=142  Identities=20%  Similarity=0.234  Sum_probs=95.7

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA  156 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~  156 (229)
                      |+++|+++.|++..    +++++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|+++... .+..+
T Consensus         1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~-~~~~i   72 (210)
T cd03269           1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIA-ARNRI   72 (210)
T ss_pred             CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHH-HHccE
Confidence            47899999998654    8999999999999999999999999999999999999   99997 8888876432 22334


Q ss_pred             CcccCc---chhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCccEEEe
Q 027060          157 PWTFNP---LLLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHKVVIV  206 (229)
Q Consensus       157 ~~~~~~---~~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~rvLi~  206 (229)
                      .+.+|.   +..+|+.+|+.+....+..                           .++.++.+++..+.++..+++++++
T Consensus        73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lll  152 (210)
T cd03269          73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL  152 (210)
T ss_pred             EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            444433   3337889988764321100                           1122333333334444444555555


Q ss_pred             cCCeeeecccCHHHHHHHHhh
Q 027060          207 DGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       207 d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      |+|+..||...++.+.+++..
T Consensus       153 DEP~~~LD~~~~~~~~~~l~~  173 (210)
T cd03269         153 DEPFSGLDPVNVELLKDVIRE  173 (210)
T ss_pred             eCCCcCCCHHHHHHHHHHHHH
Confidence            555555555567777776653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.89  E-value=2.2e-23  Score=170.01  Aligned_cols=138  Identities=17%  Similarity=0.139  Sum_probs=108.9

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hhhc
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HARR  154 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~~~  154 (229)
                      |+++|+++.|++..  ..+++++||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.++...  ..+.
T Consensus         1 i~~~~~~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   75 (178)
T cd03247           1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSS   75 (178)
T ss_pred             CEEEEEEEEeCCCC--ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHh
Confidence            47899999997641  127999999999999999999999999999999999999   99997 8888765321  1223


Q ss_pred             CCCcccCcch--hhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          155 GAPWTFNPLL--LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       155 ~~~~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.+.+|.+.  ..++.+|+       ...++.++.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus        76 ~i~~~~q~~~~~~~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~  143 (178)
T cd03247          76 LISVLNQRPYLFDTTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE  143 (178)
T ss_pred             hEEEEccCCeeecccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            3333443332  26889988       345667788888888888889999999999999999888888888764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.89  E-value=1.1e-23  Score=176.11  Aligned_cols=143  Identities=18%  Similarity=0.272  Sum_probs=97.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      |+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|+++... ..+..
T Consensus         1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03259           1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN   73 (213)
T ss_pred             CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence            47899999998654    8999999999999999999999999999999999999   99997 8888764321 11223


Q ss_pred             CCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          156 APWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       156 ~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      +.+.+|..   ..+++.+|+.+......                           ..++.++.+++..+.++..++++++
T Consensus        74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll  153 (213)
T cd03259          74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL  153 (213)
T ss_pred             EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            44444443   23688888875422110                           0122334444444444555555555


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...+..+.+++..
T Consensus       154 lDEPt~~LD~~~~~~l~~~l~~  175 (213)
T cd03259         154 LDEPLSALDAKLREELREELKE  175 (213)
T ss_pred             EcCCcccCCHHHHHHHHHHHHH
Confidence            5555555555567777777654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.2e-23  Score=190.23  Aligned_cols=94  Identities=19%  Similarity=0.269  Sum_probs=75.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhh
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HAR  153 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~  153 (229)
                      ..|+++|+++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|+++... ..+
T Consensus         2 ~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~   74 (369)
T PRK11000          2 ASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE   74 (369)
T ss_pred             CEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhH
Confidence            4699999999998754    8999999999999999999999999999999999999   99997 8888754221 112


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccc
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~  176 (229)
                      ..+.+.+|.+   +.+|+.+|+.++.
T Consensus        75 ~~i~~v~Q~~~l~~~~tv~eni~~~~  100 (369)
T PRK11000         75 RGVGMVFQSYALYPHLSVAENMSFGL  100 (369)
T ss_pred             CCEEEEeCCcccCCCCCHHHHHHhHH
Confidence            3444555543   3479999998764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.89  E-value=1.8e-23  Score=184.17  Aligned_cols=144  Identities=19%  Similarity=0.257  Sum_probs=100.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~  153 (229)
                      +++++|++++|++..    +|+|+||+|++||++||+||||||||||+++|+|+++   |++|. .++|.++..  ...+
T Consensus         2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~   74 (301)
T TIGR03522         2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ   74 (301)
T ss_pred             EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence            489999999998754    8999999999999999999999999999999999999   99997 888876422  1122


Q ss_pred             cCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccE
Q 027060          154 RGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKV  203 (229)
Q Consensus       154 ~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rv  203 (229)
                      ..+++.++.   +..+++.||+.+....+.                           ..++.++.+++..+.++..++++
T Consensus        75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  154 (301)
T TIGR03522        75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV  154 (301)
T ss_pred             hceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            334444433   334789999875432211                           01223344444444555555556


Q ss_pred             EEecCCeeeecccCHHHHHHHHhh
Q 027060          204 VIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       204 Li~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      |++|+|+..||...++.+++++..
T Consensus       155 liLDEPt~gLD~~~~~~l~~~l~~  178 (301)
T TIGR03522       155 LILDEPTTGLDPNQLVEIRNVIKN  178 (301)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHH
Confidence            666666666666667777777654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.89  E-value=1.9e-23  Score=184.13  Aligned_cols=92  Identities=21%  Similarity=0.211  Sum_probs=73.0

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHh
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHA  152 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~  152 (229)
                      .+|+++||++.|++..    +|+++||+|++|+++||+||||||||||+++|+|+++   |++|. .++|.++..  ...
T Consensus         3 ~~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   75 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLA   75 (303)
T ss_pred             cEEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHH
Confidence            3699999999998754    8999999999999999999999999999999999999   99997 888875421  112


Q ss_pred             hcCCCcccCc---chhhhHHHHHHc
Q 027060          153 RRGAPWTFNP---LLLLNCLKNLRN  174 (229)
Q Consensus       153 ~~~~~~~~~~---~~~~tv~e~l~~  174 (229)
                      +..+++.+|.   +..+|+.+|+.+
T Consensus        76 ~~~i~~v~q~~~~~~~~tv~e~l~~  100 (303)
T TIGR01288        76 RVAIGVVPQFDNLDPEFTVRENLLV  100 (303)
T ss_pred             hhcEEEEeccccCCcCCcHHHHHHH
Confidence            2334344433   334789999875

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.89  E-value=2.5e-23  Score=169.04  Aligned_cols=135  Identities=15%  Similarity=0.163  Sum_probs=108.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|++..  ..+++++||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..   ...+
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   75 (173)
T cd03246           1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG   75 (173)
T ss_pred             CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence            47899999997521  127899999999999999999999999999999999999   99997 888865421   1222


Q ss_pred             cCCCcccCcchh--hhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+.+.+|.+.+  .++.+|+          ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus        76 ~~i~~~~q~~~~~~~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~  141 (173)
T cd03246          76 DHVGYLPQDDELFSGSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA  141 (173)
T ss_pred             hheEEECCCCccccCcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence            334444444322  5888887          667888898888889999999999999999999999988888754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=4.1e-24  Score=175.14  Aligned_cols=98  Identities=24%  Similarity=0.320  Sum_probs=84.3

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----E  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~  149 (229)
                      |.++.++|+.|+|+.+.    +++++||+|++||+|||+|||||||||.+.+++|+++   |++|. .++|.++.    .
T Consensus         2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~   74 (243)
T COG1137           2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH   74 (243)
T ss_pred             CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence            45799999999999887    8999999999999999999999999999999999999   99997 88998753    3


Q ss_pred             HHhhcCCCcccCcch---hhhHHHHHHcccccc
Q 027060          150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY  179 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~  179 (229)
                      .+.+.|+++.+|...   -+||.+|+.....+.
T Consensus        75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~  107 (243)
T COG1137          75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR  107 (243)
T ss_pred             HHhhcCcccccccchHhhcCcHHHHHHHHHhhh
Confidence            567788877776654   399999998765443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.89  E-value=9.5e-24  Score=177.45  Aligned_cols=145  Identities=18%  Similarity=0.242  Sum_probs=98.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA  156 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~  156 (229)
                      |+++|+++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++....  ..+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~--~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPG--PDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccc--CcE
Confidence            4789999999862111128999999999999999999999999999999999999   99997 88887654222  223


Q ss_pred             CcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEEe
Q 027060          157 PWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVIV  206 (229)
Q Consensus       157 ~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~  206 (229)
                      .+.+|..   ..+|+.+|+.++...+.                           ..++.++.+++..+.++..+++++++
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL  155 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL  155 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            3334332   33688888875422110                           01223444455555555555666666


Q ss_pred             cCCeeeecccCHHHHHHHHhh
Q 027060          207 DGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       207 d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      |+|+..||...+..+.+++..
T Consensus       156 DEPt~~LD~~~~~~~~~~l~~  176 (220)
T cd03293         156 DEPFSALDALTREQLQEELLD  176 (220)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            666666666677777777653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.89  E-value=2.4e-23  Score=174.10  Aligned_cols=144  Identities=17%  Similarity=0.217  Sum_probs=98.7

Q ss_pred             eEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        77 ~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      +|+++|+++.|+ +..    +|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..     
T Consensus         1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ   73 (214)
T ss_pred             CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence            488999999994 433    8999999999999999999999999999999999999   99997 888875421     


Q ss_pred             -HHhhcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhcc
Q 027060          150 -AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       150 -~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                       ...+..+.+.+|...   .+++.+|+.+......                           ..++.++.+++..+.++.
T Consensus        74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~  153 (214)
T TIGR02673        74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV  153 (214)
T ss_pred             HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence             112233444444432   3688898876421100                           012233444444445555


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++|+|+..||...+..+.+++..
T Consensus       154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~  182 (214)
T TIGR02673       154 NSPPLLLADEPTGNLDPDLSERILDLLKR  182 (214)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            55666666666666666667788777754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.89  E-value=2.4e-23  Score=174.56  Aligned_cols=148  Identities=20%  Similarity=0.273  Sum_probs=97.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~  153 (229)
                      +|+++|+++.|++......+|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|+++..  ...+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   77 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR   77 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence            47899999999864111128999999999999999999999999999999999999   99997 888875432  1112


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccE
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKV  203 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rv  203 (229)
                      ..+.+.+|..   ..+++.+|+.+....+.                           ..++.++.+++..+.++..++++
T Consensus        78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i  157 (218)
T cd03266          78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV  157 (218)
T ss_pred             hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence            2344444433   33789999875432110                           01122333444444444455555


Q ss_pred             EEecCCeeeecccCHHHHHHHHhh
Q 027060          204 VIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       204 Li~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      |++|+|+..||......+.+++..
T Consensus       158 lllDEPt~~LD~~~~~~l~~~l~~  181 (218)
T cd03266         158 LLLDEPTTGLDVMATRALREFIRQ  181 (218)
T ss_pred             EEEcCCCcCCCHHHHHHHHHHHHH
Confidence            555555555555567777777653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.89  E-value=3.5e-23  Score=172.46  Aligned_cols=143  Identities=20%  Similarity=0.249  Sum_probs=94.3

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      |+++|+++.|++..    +|+++||++.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++... ..+..
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (208)
T cd03268           1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR   73 (208)
T ss_pred             CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence            47899999997654    8999999999999999999999999999999999999   99997 8888765321 11223


Q ss_pred             CCcccCc---chhhhHHHHHHccccccCC-----------------------CCCCCCCCchhhhhhccCCccEEEecCC
Q 027060          156 APWTFNP---LLLLNCLKNLRNQGSVYAP-----------------------SFDHGVGDPVEDDILVGLQHKVVIVDGN  209 (229)
Q Consensus       156 ~~~~~~~---~~~~tv~e~l~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~rvLi~d~~  209 (229)
                      +.+.+|.   ++.+|+.+|+.++...+..                       .++.++.+++..+.++..+++++++|+|
T Consensus        74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  153 (208)
T cd03268          74 IGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP  153 (208)
T ss_pred             EEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            3344443   3347999998764321100                       0112333333333334444444555555


Q ss_pred             eeeecccCHHHHHHHHhh
Q 027060          210 YLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       210 ~LlLDEP~~~~l~~~l~~  227 (229)
                      +..||...+..+.+++..
T Consensus       154 t~~LD~~~~~~l~~~l~~  171 (208)
T cd03268         154 TNGLDPDGIKELRELILS  171 (208)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            555554457777766653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.8e-23  Score=176.83  Aligned_cols=93  Identities=29%  Similarity=0.358  Sum_probs=74.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      .+|+++|+++.|++..    +|+++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..    .
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (241)
T PRK10895          2 ATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLHA   74 (241)
T ss_pred             ceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            4799999999998654    8999999999999999999999999999999999999   99997 888865421    1


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ..+.++.+.+|..   ..+++.+|+.+.
T Consensus        75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~  102 (241)
T PRK10895         75 RARRGIGYLPQEASIFRRLSVYDNLMAV  102 (241)
T ss_pred             HHHhCeEEeccCCcccccCcHHHHHhhh
Confidence            1233444444443   236899998764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.4e-23  Score=180.78  Aligned_cols=144  Identities=15%  Similarity=0.171  Sum_probs=95.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG  155 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~  155 (229)
                      +|+++|+++.|++..    +|+|+||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++.......+
T Consensus         1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   73 (255)
T PRK11248          1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG   73 (255)
T ss_pred             CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence            488999999998654    8999999999999999999999999999999999999   99997 888876532111223


Q ss_pred             C-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEEec
Q 027060          156 A-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVIVD  207 (229)
Q Consensus       156 ~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d  207 (229)
                      + ++.+..+...|+.+|+.++.....                           ..++.++.+++..+.++..++++|++|
T Consensus        74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD  153 (255)
T PRK11248         74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD  153 (255)
T ss_pred             EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            2 222222333688888876421110                           011223334444444444455555555


Q ss_pred             CCeeeecccCHHHHHHHHhh
Q 027060          208 GNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       208 ~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+..||...+..+.+++..
T Consensus       154 EPt~~LD~~~~~~l~~~L~~  173 (255)
T PRK11248        154 EPFGALDAFTREQMQTLLLK  173 (255)
T ss_pred             CCCccCCHHHHHHHHHHHHH
Confidence            55555555567777776653

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.89  E-value=3e-23  Score=177.50  Aligned_cols=145  Identities=15%  Similarity=0.232  Sum_probs=98.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      ++|+++||++.|++..    +|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..     
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (250)
T PRK11264          2 SAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLS   74 (250)
T ss_pred             CcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcccccccc
Confidence            4799999999998654    8999999999999999999999999999999999999   99997 788765321     


Q ss_pred             ------HHhhcCCCcccCcc---hhhhHHHHHHccccc-cC---------------------------CCCCCCCCCchh
Q 027060          150 ------AHARRGAPWTFNPL---LLLNCLKNLRNQGSV-YA---------------------------PSFDHGVGDPVE  192 (229)
Q Consensus       150 ------~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~-~~---------------------------~~~~~~~~~~~~  192 (229)
                            ...+..+.+.+|..   +..|+.+|+.++... ..                           ..++.++.+++.
T Consensus        75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~  154 (250)
T PRK11264         75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA  154 (250)
T ss_pred             chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence                  11223344444443   236888888653110 00                           012223344444


Q ss_pred             hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.++..++++|++|+|+..||...+..+.+++..
T Consensus       155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  189 (250)
T PRK11264        155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ  189 (250)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            44445555555666666666666567777777654

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.89  E-value=2.7e-23  Score=174.74  Aligned_cols=91  Identities=24%  Similarity=0.341  Sum_probs=70.8

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhc
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARR  154 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~  154 (229)
                      |+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..  ...+.
T Consensus         1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (220)
T cd03265           1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR   73 (220)
T ss_pred             CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence            57899999998754    8999999999999999999999999999999999999   99997 788865321  11122


Q ss_pred             CCCcccCcc---hhhhHHHHHHcc
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      .+.+.+|..   ..+++.+|+.+.
T Consensus        74 ~i~~~~q~~~~~~~~tv~~~l~~~   97 (220)
T cd03265          74 RIGIVFQDLSVDDELTGWENLYIH   97 (220)
T ss_pred             cEEEecCCccccccCcHHHHHHHH
Confidence            333344433   337889988764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.89  E-value=2.5e-23  Score=176.27  Aligned_cols=148  Identities=20%  Similarity=0.238  Sum_probs=97.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      +|+++|+++.|++......+|+++||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|.++..     .
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL   77 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence            48899999999864100128999999999999999999999999999999999999   99997 888876421     1


Q ss_pred             -HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          151 -HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 -~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                       ..+..+.+.+|..   ..+|+.+|+.+......                           ..++.++.+++..+.++..
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  157 (233)
T cd03258          78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN  157 (233)
T ss_pred             HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence             1123344444443   23789999876421110                           0112233344444444444


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++++++|+|+..||...+..+.+++..
T Consensus       158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~  185 (233)
T cd03258         158 NPKVLLCDEATSALDPETTQSILALLRD  185 (233)
T ss_pred             CCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence            5555555555555555567777776653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.89  E-value=3e-23  Score=174.19  Aligned_cols=143  Identities=19%  Similarity=0.219  Sum_probs=96.4

Q ss_pred             EEEeeeeEEcCc--cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHh
Q 027060           78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~--~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~  152 (229)
                      |+++||++.|++  ..    +|+++||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..  ...
T Consensus         1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (220)
T cd03263           1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAA   73 (220)
T ss_pred             CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHH
Confidence            578999999976  33    8999999999999999999999999999999999999   99997 888876421  111


Q ss_pred             hcCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCcc
Q 027060          153 RRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       153 ~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      +..+.+.+|.   +...|+.+|+.+....+.                           ..++.++.+++..+.++..+++
T Consensus        74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  153 (220)
T cd03263          74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS  153 (220)
T ss_pred             hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence            2223333333   234688898876422110                           0112233444444444455555


Q ss_pred             EEEecCCeeeecccCHHHHHHHHhh
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|+|+..||...++.+.+++..
T Consensus       154 llllDEP~~~LD~~~~~~l~~~l~~  178 (220)
T cd03263         154 VLLLDEPTSGLDPASRRAIWDLILE  178 (220)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHH
Confidence            5666666666665567777777654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.89  E-value=3.1e-23  Score=175.41  Aligned_cols=143  Identities=22%  Similarity=0.273  Sum_probs=94.9

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~  152 (229)
                      |+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..    ...
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03218           1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA   73 (232)
T ss_pred             CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence            47899999998654    8999999999999999999999999999999999999   99997 888875421    112


Q ss_pred             hcCCCcccCcc---hhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCcc
Q 027060          153 RRGAPWTFNPL---LLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       153 ~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      +..+.+.+|..   ..+|+.+|+.+.......                           .++.++.+++..+.++..+++
T Consensus        74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  153 (232)
T cd03218          74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK  153 (232)
T ss_pred             hccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            23344444433   336899998764321110                           011233333333444444455


Q ss_pred             EEEecCCeeeecccCHHHHHHHHhh
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|++|+|+..||....+.+.+++..
T Consensus       154 llllDEPt~~LD~~~~~~~~~~l~~  178 (232)
T cd03218         154 FLLLDEPFAGVDPIAVQDIQKIIKI  178 (232)
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHH
Confidence            5555555555555567777776653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.4e-23  Score=188.59  Aligned_cols=97  Identities=20%  Similarity=0.258  Sum_probs=78.7

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HH
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AH  151 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~  151 (229)
                      +.++|+++|+++.|++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++.. ..
T Consensus        16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~   88 (377)
T PRK11607         16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP   88 (377)
T ss_pred             CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            456899999999998754    7999999999999999999999999999999999999   99997 888876422 12


Q ss_pred             hhcCCCcccCcc---hhhhHHHHHHcccc
Q 027060          152 ARRGAPWTFNPL---LLLNCLKNLRNQGS  177 (229)
Q Consensus       152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~  177 (229)
                      .++.+++.||.+   +.+|+.||+.++..
T Consensus        89 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~  117 (377)
T PRK11607         89 YQRPINMMFQSYALFPHMTVEQNIAFGLK  117 (377)
T ss_pred             HHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence            234455555554   34899999998643

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.89  E-value=4e-23  Score=173.23  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=74.1

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA  152 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~  152 (229)
                      ..++|+++|+++.|++..    +++++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|+++.....
T Consensus         8 ~~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~   80 (214)
T PRK13543          8 APPLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDR   80 (214)
T ss_pred             CcceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhh
Confidence            446899999999998754    8999999999999999999999999999999999999   99997 888876532212


Q ss_pred             hcCCCcccCcc---hhhhHHHHHHcc
Q 027060          153 RRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      +..+.+.++.+   ..+++.+|+.+.
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~  106 (214)
T PRK13543         81 SRFMAYLGHLPGLKADLSTLENLHFL  106 (214)
T ss_pred             hhceEEeecCcccccCCcHHHHHHHH
Confidence            22333333332   236888888653

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.89  E-value=2e-23  Score=188.14  Aligned_cols=144  Identities=15%  Similarity=0.234  Sum_probs=101.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC--ce-EecCCCHHHH-Hh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--AS-SFDSQDPKEA-HA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~--G~-~~~g~~~~~~-~~  152 (229)
                      .|+++||++.|++..    +|+++||+|.+||+++|+|||||||||||++|+|+++   |++  |. .++|+++... ..
T Consensus         5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~   77 (362)
T TIGR03258         5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH   77 (362)
T ss_pred             EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence            389999999998754    8999999999999999999999999999999999999   999  97 8888764221 12


Q ss_pred             hcCCCcccCcch---hhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCcc
Q 027060          153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      ++.+.+.||.+.   .+|+.+|+.++......                           .++.++.+++..+.++..+++
T Consensus        78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~  157 (362)
T TIGR03258        78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD  157 (362)
T ss_pred             HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            344555555543   47999999876432110                           112233444444444555555


Q ss_pred             EEEecCCeeeecccCHHHHHHHHhh
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|++|+|+..||...+.++++.+..
T Consensus       158 llLLDEP~s~LD~~~r~~l~~~l~~  182 (362)
T TIGR03258       158 VLLLDEPLSALDANIRANMREEIAA  182 (362)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHH
Confidence            5555555555555567777777653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.88  E-value=4.2e-23  Score=174.29  Aligned_cols=150  Identities=17%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      .++|+++|+++.|++......+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|+++..    
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~   80 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE   80 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence            3579999999999753111127899999999999999999999999999999999999   99997 788865321    


Q ss_pred             -H--HhhcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhh
Q 027060          150 -A--HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDIL  196 (229)
Q Consensus       150 -~--~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~  196 (229)
                       .  .++..+.+.+|.+.   .+++.+|+.+......                           ..++.++.+++..+.+
T Consensus        81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a  160 (228)
T PRK10584         81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA  160 (228)
T ss_pred             HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence             1  11234444444432   2689999875321110                           0112233344444444


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..++++|++|+|+..||...+..+.+++..
T Consensus       161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  191 (228)
T PRK10584        161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFS  191 (228)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            4444555555555555555557777776643

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.88  E-value=3.4e-23  Score=172.41  Aligned_cols=151  Identities=14%  Similarity=0.082  Sum_probs=111.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~~  153 (229)
                      .+.++||+|.|+.......+|+++||+|++|++++|+|+||||||||+++|+|+++...|++|. .++|.++...  ..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            5789999999976422334899999999999999999999999999999999998611246896 8888764321  222


Q ss_pred             cCCCcccCc---chhhhHHHHHHccccc----cCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          154 RGAPWTFNP---LLLLNCLKNLRNQGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       154 ~~~~~~~~~---~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      ..+.+.+|.   +..+|+.+|+.+....    ....++.++.+++..+.++..+++++++|+|+..||...++.+.+++.
T Consensus        83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~  162 (202)
T cd03233          83 GEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR  162 (202)
T ss_pred             ceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            334444433   2337999999875432    112345667777777777777888888888888888888888888776


Q ss_pred             h
Q 027060          227 E  227 (229)
Q Consensus       227 ~  227 (229)
                      .
T Consensus       163 ~  163 (202)
T cd03233         163 T  163 (202)
T ss_pred             H
Confidence            4

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.6e-23  Score=176.35  Aligned_cols=149  Identities=13%  Similarity=0.119  Sum_probs=97.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      ++|+++||++.|++......+|+++||+|++||+++|+||||||||||+++|+|+++   |++|. .++|+++..     
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   80 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA   80 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence            479999999999752111237999999999999999999999999999999999999   99997 888875421     


Q ss_pred             H--HhhcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhc
Q 027060          150 A--HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       150 ~--~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      .  .++..+.+.+|...   .+|+.+|+.+......                           ..++.++.+++..+.++
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al  160 (233)
T PRK11629         81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL  160 (233)
T ss_pred             HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence            1  11234444454432   3689999876321100                           01112333344444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+++++++|+|+..||...+..+.+++..
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (233)
T PRK11629        161 VNNPRLVLADEPTGNLDARNADSIFQLLGE  190 (233)
T ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            445555555555555555567777776653

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.88  E-value=4e-23  Score=172.48  Aligned_cols=143  Identities=19%  Similarity=0.253  Sum_probs=97.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HHH
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EAH  151 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~~  151 (229)
                      |+++|+++.|++..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++.     ...
T Consensus         1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03262           1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE   73 (213)
T ss_pred             CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence            47899999998754    8999999999999999999999999999999999999   99997 88886541     112


Q ss_pred             hhcCCCcccCcch---hhhHHHHHHcccc-ccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          152 ARRGAPWTFNPLL---LLNCLKNLRNQGS-VYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~-~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      .+..+.+.+|...   .+++.+|+.++.. ...                           ..++.++.+++..+.++..+
T Consensus        74 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  153 (213)
T cd03262          74 LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN  153 (213)
T ss_pred             HHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence            2334555554432   3688898876421 000                           01222334444444444455


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++++|+|+..||...++.+.+++..
T Consensus       154 p~llllDEP~~~LD~~~~~~l~~~l~~  180 (213)
T cd03262         154 PKVMLFDEPTSALDPELVGEVLDVMKD  180 (213)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            555555555555555567777777654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.7e-23  Score=186.22  Aligned_cols=148  Identities=19%  Similarity=0.247  Sum_probs=99.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      ||+++||+++|+.......+|+|+||+|++||++||+||||||||||+|+|+|+++   |++|. .++|.++..     .
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~   77 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL   77 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence            48999999999721111238999999999999999999999999999999999999   99997 888875421     1


Q ss_pred             -HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          151 -HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 -~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                       ..+..+.+.+|.+   ..+|+.+|+.++.....                           ..++.++.+++..+.++..
T Consensus        78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~  157 (343)
T PRK11153         78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS  157 (343)
T ss_pred             HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence             1233444555443   23789999986532110                           0122334444444444555


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|+|+..||...+..+.+++..
T Consensus       158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~  185 (343)
T PRK11153        158 NPKVLLCDEATSALDPATTRSILELLKD  185 (343)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            5555555666666665567777777654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.88  E-value=5.7e-23  Score=173.39  Aligned_cols=91  Identities=23%  Similarity=0.295  Sum_probs=72.5

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh-----cccCCCCce-EecCCCHHH--
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll-----~~~~p~~G~-~~~g~~~~~--  149 (229)
                      |+++||++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|++     +   |++|. .++|+++..  
T Consensus         1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~   73 (227)
T cd03260           1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD   73 (227)
T ss_pred             CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence            57899999998754    899999999999999999999999999999999999     8   99997 888876532  


Q ss_pred             ---HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          150 ---AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       150 ---~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                         ...+..+.+.+|...  .+|+.+|+.++
T Consensus        74 ~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~  104 (227)
T cd03260          74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYG  104 (227)
T ss_pred             hHHHHHHhhEEEEecCchhccccHHHHHHhH
Confidence               112233444444433  37899998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.88  E-value=4.9e-23  Score=173.00  Aligned_cols=143  Identities=20%  Similarity=0.211  Sum_probs=97.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~  152 (229)
                      |+++||++.|++..    +++++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..    ...
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (222)
T cd03224           1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA   73 (222)
T ss_pred             CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence            57899999998654    8999999999999999999999999999999999999   99997 888865321    112


Q ss_pred             hcCCCcccCcc---hhhhHHHHHHccccccCC--------------------------CCCCCCCCchhhhhhccCCccE
Q 027060          153 RRGAPWTFNPL---LLLNCLKNLRNQGSVYAP--------------------------SFDHGVGDPVEDDILVGLQHKV  203 (229)
Q Consensus       153 ~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~rv  203 (229)
                      +..+.+.+|..   ..+|+.+|+.+.......                          .++.++.+++..+.++..++++
T Consensus        74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  153 (222)
T cd03224          74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL  153 (222)
T ss_pred             hcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            23344444443   336899998764322100                          1122333444444444445555


Q ss_pred             EEecCCeeeecccCHHHHHHHHhh
Q 027060          204 VIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       204 Li~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|+|+..||...+..+.+++..
T Consensus       154 lllDEPt~~LD~~~~~~l~~~l~~  177 (222)
T cd03224         154 LLLDEPSEGLAPKIVEEIFEAIRE  177 (222)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHH
Confidence            555666666665567777777654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.88  E-value=6.9e-23  Score=170.05  Aligned_cols=144  Identities=18%  Similarity=0.155  Sum_probs=96.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~  153 (229)
                      +|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|+++..  ...+
T Consensus         1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~   73 (200)
T PRK13540          1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ   73 (200)
T ss_pred             CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence            488999999998754    8999999999999999999999999999999999999   99997 888876431  1122


Q ss_pred             cCCCcccCc---chhhhHHHHHHccccccC----------------------CCCCCCCCCchhhhhhccCCccEEEecC
Q 027060          154 RGAPWTFNP---LLLLNCLKNLRNQGSVYA----------------------PSFDHGVGDPVEDDILVGLQHKVVIVDG  208 (229)
Q Consensus       154 ~~~~~~~~~---~~~~tv~e~l~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~  208 (229)
                      ..+.+.++.   ++..|+.+|+.++.....                      ..++.++.+++..+.++..+++++++|+
T Consensus        74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE  153 (200)
T PRK13540         74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE  153 (200)
T ss_pred             hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            233333332   234789999876421100                      0112233334444444444455555555


Q ss_pred             CeeeecccCHHHHHHHHhh
Q 027060          209 NYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       209 ~~LlLDEP~~~~l~~~l~~  227 (229)
                      |+..||......+.+++..
T Consensus       154 P~~~LD~~~~~~l~~~l~~  172 (200)
T PRK13540        154 PLVALDELSLLTIITKIQE  172 (200)
T ss_pred             CCcccCHHHHHHHHHHHHH
Confidence            5555555567777776653

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.88  E-value=5e-23  Score=171.37  Aligned_cols=144  Identities=19%  Similarity=0.188  Sum_probs=94.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AH  151 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~  151 (229)
                      +|+++|+++.|++..    +|+++||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.++..    ..
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~   73 (204)
T PRK13538          1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH   73 (204)
T ss_pred             CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence            488999999998754    7999999999999999999999999999999999999   99997 888865421    11


Q ss_pred             hhcCC-CcccCcchhhhHHHHHHccccccC------------------------CCCCCCCCCchhhhhhccCCccEEEe
Q 027060          152 ARRGA-PWTFNPLLLLNCLKNLRNQGSVYA------------------------PSFDHGVGDPVEDDILVGLQHKVVIV  206 (229)
Q Consensus       152 ~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~  206 (229)
                      ...++ ++.+.....+|+.+|+.+....+.                        ..++.++.+++..+.++...++++++
T Consensus        74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  153 (204)
T PRK13538         74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL  153 (204)
T ss_pred             hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            22222 222223333789999876532211                        01112233333333444444455555


Q ss_pred             cCCeeeecccCHHHHHHHHhh
Q 027060          207 DGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       207 d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      |+|+..||...+..+.+++..
T Consensus       154 DEPt~~LD~~~~~~l~~~l~~  174 (204)
T PRK13538        154 DEPFTAIDKQGVARLEALLAQ  174 (204)
T ss_pred             eCCCccCCHHHHHHHHHHHHH
Confidence            555555555567777776653

>PRK10908 cell division protein FtsE; Provisional

Probab=99.88  E-value=4.7e-23  Score=173.47  Aligned_cols=144  Identities=18%  Similarity=0.190  Sum_probs=95.1

Q ss_pred             eEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        77 ~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      +|+++|+++.| ++..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..     
T Consensus         1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~   73 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE   73 (222)
T ss_pred             CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence            38899999999 5433    7999999999999999999999999999999999999   99997 888875421     


Q ss_pred             H-HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhcc
Q 027060          150 A-HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       150 ~-~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                      . ..+..+.+.+|.+   ...++.+|+.+......                           ..++.++.+++..+.++.
T Consensus        74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~  153 (222)
T PRK10908         74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV  153 (222)
T ss_pred             HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHH
Confidence            1 1223444444443   33789999876421110                           011122333333344444


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++++|++|+|+..||...++.+.+++..
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (222)
T PRK10908        154 NKPAVLLADEPTGNLDDALSEGILRLFEE  182 (222)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            44555555555555555556777776653

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.88  E-value=3.9e-23  Score=172.77  Aligned_cols=140  Identities=14%  Similarity=0.143  Sum_probs=96.3

Q ss_pred             EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCC
Q 027060           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAP  157 (229)
Q Consensus        79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~  157 (229)
                      +++||++.|++..    +|+++||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|+++...+.  .+.
T Consensus         1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~--~i~   71 (213)
T cd03235           1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERK--RIG   71 (213)
T ss_pred             CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHh--heE
Confidence            3689999998654    7999999999999999999999999999999999999   99997 888887653222  343


Q ss_pred             cccCcch-----hhhHHHHHHccccccC-------------------------------CCCCCCCCCchhhhhhccCCc
Q 027060          158 WTFNPLL-----LLNCLKNLRNQGSVYA-------------------------------PSFDHGVGDPVEDDILVGLQH  201 (229)
Q Consensus       158 ~~~~~~~-----~~tv~e~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~  201 (229)
                      +.+|.+.     ..|+.+|+.+......                               ..++.++.+++..+.++..++
T Consensus        72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p  151 (213)
T cd03235          72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP  151 (213)
T ss_pred             EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            4443322     2689999876432110                               011223334444444444555


Q ss_pred             cEEEecCCeeeecccCHHHHHHHHhh
Q 027060          202 KVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       202 rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++++|+|+..||...+..+.+++..
T Consensus       152 ~llllDEPt~~LD~~~~~~l~~~l~~  177 (213)
T cd03235         152 DLLLLDEPFAGVDPKTQEDIYELLRE  177 (213)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            55666666666666567777777654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.88  E-value=5.9e-23  Score=171.39  Aligned_cols=144  Identities=17%  Similarity=0.174  Sum_probs=94.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG  155 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~  155 (229)
                      +|+++|+++.|++..    +|+++||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.+......+..
T Consensus         2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (207)
T PRK13539          2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA   74 (207)
T ss_pred             EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence            599999999998654    8999999999999999999999999999999999999   99997 888875321112222


Q ss_pred             CCccc---CcchhhhHHHHHHccccccC-----------------------CCCCCCCCCchhhhhhccCCccEEEecCC
Q 027060          156 APWTF---NPLLLLNCLKNLRNQGSVYA-----------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGN  209 (229)
Q Consensus       156 ~~~~~---~~~~~~tv~e~l~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~  209 (229)
                      +.+.+   .....+++.+|+.+......                       ..++.++.+++..+.++..+++++++|+|
T Consensus        75 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  154 (207)
T PRK13539         75 CHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP  154 (207)
T ss_pred             cEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            32332   22233788898865322110                       01122333333333334444444444444


Q ss_pred             eeeecccCHHHHHHHHhh
Q 027060          210 YLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       210 ~LlLDEP~~~~l~~~l~~  227 (229)
                      +..||...+..+.+++.+
T Consensus       155 t~~LD~~~~~~l~~~l~~  172 (207)
T PRK13539        155 TAALDAAAVALFAELIRA  172 (207)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            444444457777777754

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.88  E-value=7.2e-23  Score=165.52  Aligned_cols=134  Identities=15%  Similarity=0.073  Sum_probs=106.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA  156 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~  156 (229)
                      |+++|+++.|++..   .+|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.      ...++
T Consensus         1 i~~~~~~~~~~~~~---~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~------~~i~~   68 (166)
T cd03223           1 IELENLSLATPDGR---VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG------EDLLF   68 (166)
T ss_pred             CEEEEEEEEcCCCC---eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC------ceEEE
Confidence            46899999996421   27899999999999999999999999999999999999   99997 66653      12222


Q ss_pred             -CcccCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          157 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       157 -~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                       ++.+.. ...|+.+|+.++   ....++.++.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus        69 ~~q~~~~-~~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~  136 (166)
T cd03223          69 LPQRPYL-PLGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE  136 (166)
T ss_pred             ECCCCcc-ccccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence             222221 236999999874   2345677888888888888889999999999999999889888888764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.88  E-value=6.8e-23  Score=173.11  Aligned_cols=146  Identities=17%  Similarity=0.199  Sum_probs=98.0

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A  150 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~  150 (229)
                      .++|+++||++.|++..    +++++||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..   .
T Consensus         5 ~~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   77 (225)
T PRK10247          5 SPLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPE   77 (225)
T ss_pred             CceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHH
Confidence            34799999999998654    8999999999999999999999999999999999999   99997 888864321   1


Q ss_pred             HhhcCCCcccCcchh--hhHHHHHHccccccC--------------------------CCCCCCCCCchhhhhhccCCcc
Q 027060          151 HARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------PSFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       151 ~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      ..+..+.+.+|...+  .++.+|+.+......                          ..++.++.+++..+.++..+++
T Consensus        78 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~  157 (225)
T PRK10247         78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK  157 (225)
T ss_pred             HHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            122334444444322  588888865321110                          0111223334444444445555


Q ss_pred             EEEecCCeeeecccCHHHHHHHHhh
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|+|+..||...+..+.+++..
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~  182 (225)
T PRK10247        158 VLLLDEITSALDESNKHNVNEIIHR  182 (225)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            5666666666666567777776654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.88  E-value=8.7e-23  Score=173.81  Aligned_cols=92  Identities=27%  Similarity=0.411  Sum_probs=72.3

Q ss_pred             eEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        77 ~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      +|+++||++.|+ +..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..     
T Consensus         1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK   73 (243)
T ss_pred             CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence            478999999997 543    8999999999999999999999999999999999999   99997 888876431     


Q ss_pred             -HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          150 -AHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       150 -~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                       ...+..+.+.+|..   ..+|+.+|+.++
T Consensus        74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  103 (243)
T TIGR02315        74 LRKLRRRIGMIFQHYNLIERLTVLENVLHG  103 (243)
T ss_pred             HHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence             11223344444433   337999999754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.88  E-value=4e-23  Score=174.06  Aligned_cols=95  Identities=19%  Similarity=0.316  Sum_probs=72.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------  149 (229)
                      +|+++||++.|++......+|+++||+|++||+++|+||||||||||+++|+|+++   |++|. .++|+++..      
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR   77 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence            47899999999764101127999999999999999999999999999999999999   99997 888875422      


Q ss_pred             HHhhcCCCcccCcc-----hhhhHHHHHHc
Q 027060          150 AHARRGAPWTFNPL-----LLLNCLKNLRN  174 (229)
Q Consensus       150 ~~~~~~~~~~~~~~-----~~~tv~e~l~~  174 (229)
                      ...+..+.+.+|..     ..+|+.+|+.+
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~  107 (228)
T cd03257          78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAE  107 (228)
T ss_pred             HHhhccEEEEecCchhhcCCcCCHHHHHHH
Confidence            12233444445443     23688888865

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.88  E-value=4.3e-23  Score=175.65  Aligned_cols=92  Identities=18%  Similarity=0.373  Sum_probs=72.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~  154 (229)
                      +|+++||++.|++..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++... ..+.
T Consensus         2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (239)
T cd03296           2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER   74 (239)
T ss_pred             EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence            489999999998754    8999999999999999999999999999999999999   99997 8888654221 1123


Q ss_pred             CCCcccCcc---hhhhHHHHHHcc
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      .+.+.+|.+   ..+|+.+|+.++
T Consensus        75 ~i~~v~q~~~~~~~~tv~e~l~~~   98 (239)
T cd03296          75 NVGFVFQHYALFRHMTVFDNVAFG   98 (239)
T ss_pred             ceEEEecCCcccCCCCHHHHHhhh
Confidence            344444443   236899998764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.88  E-value=6.9e-23  Score=174.05  Aligned_cols=144  Identities=22%  Similarity=0.227  Sum_probs=99.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~  153 (229)
                      +|+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..  ....
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~   73 (236)
T TIGR03864         1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL   73 (236)
T ss_pred             CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence            478999999998654    8999999999999999999999999999999999999   99997 888875421  1111


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccE
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKV  203 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rv  203 (229)
                      ..+.+.+|..   ..+++.+|+.+......                           ..++.++.+++..+.++..++++
T Consensus        74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l  153 (236)
T TIGR03864        74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL  153 (236)
T ss_pred             hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            2333333332   33788888875422110                           01223444455555555556666


Q ss_pred             EEecCCeeeecccCHHHHHHHHhh
Q 027060          204 VIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       204 Li~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|+|+..||...+..+.+++..
T Consensus       154 lllDEP~~~LD~~~~~~l~~~l~~  177 (236)
T TIGR03864       154 LLLDEPTVGLDPASRAAIVAHVRA  177 (236)
T ss_pred             EEEcCCccCCCHHHHHHHHHHHHH
Confidence            666666666666677777777653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.88  E-value=3.6e-23  Score=172.86  Aligned_cols=143  Identities=16%  Similarity=0.199  Sum_probs=96.6

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      |+++|+++.|++..    +|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.++... ..+..
T Consensus         1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~   73 (213)
T cd03301           1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD   73 (213)
T ss_pred             CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence            47899999998754    8999999999999999999999999999999999999   99997 8888754221 11123


Q ss_pred             CCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          156 APWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       156 ~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      +.+.+|..   ...|+.+|+.++.....                           ..++.++.+++..+.++..++++++
T Consensus        74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll  153 (213)
T cd03301          74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL  153 (213)
T ss_pred             EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            44444433   23688999876422110                           0122333444444444455555566


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||....+.+.+++..
T Consensus       154 lDEPt~~LD~~~~~~l~~~l~~  175 (213)
T cd03301         154 MDEPLSNLDAKLRVQMRAELKR  175 (213)
T ss_pred             EcCCcccCCHHHHHHHHHHHHH
Confidence            6666666665567777776653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.2e-22  Score=173.32  Aligned_cols=145  Identities=20%  Similarity=0.184  Sum_probs=96.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      ..|+++|+++.|++..    +|+|+||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ..
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   74 (241)
T PRK14250          2 NEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVID   74 (241)
T ss_pred             ceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHH
Confidence            4689999999997654    7999999999999999999999999999999999999   99997 888876432   11


Q ss_pred             hhcCCCcccCcchh--hhHHHHHHccccccC------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      .+..+.+.+|.+.+  .++.+|+.+......                        ..++.++.+++..+.++..++++++
T Consensus        75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  154 (241)
T PRK14250         75 LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL  154 (241)
T ss_pred             hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            22334444444322  588888875422110                        0112233333333444444455555


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...+..+.+++..
T Consensus       155 lDEPt~~LD~~~~~~l~~~l~~  176 (241)
T PRK14250        155 LDEPTSALDPTSTEIIEELIVK  176 (241)
T ss_pred             EeCCcccCCHHHHHHHHHHHHH
Confidence            5555555555557777666653

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=8.7e-23  Score=168.77  Aligned_cols=134  Identities=17%  Similarity=0.265  Sum_probs=103.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~  150 (229)
                      ||+++|++++..++.    ++++++|++.+||+++|+||||||||||||.|+|.+.   |++|+ .++|.+..     ..
T Consensus         1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l   73 (259)
T COG4559           1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL   73 (259)
T ss_pred             CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence            589999999998876    8999999999999999999999999999999999999   99997 88988642     33


Q ss_pred             HhhcCC-CcccCcchhhhHHHHHHccccccCCCCC-----------------CCCCCchhhhhhccCCccE---------
Q 027060          151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFD-----------------HGVGDPVEDDILVGLQHKV---------  203 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~rv---------  203 (229)
                      ...+++ ++.....+.++|.|-+.++...+.....                 .+...+....++.|+++||         
T Consensus        74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl  153 (259)
T COG4559          74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL  153 (259)
T ss_pred             HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence            444554 6666555568999999998765532111                 2334555566777777776         


Q ss_pred             --EEecCCeeeecccC
Q 027060          204 --VIVDGNYLFLDGGV  217 (229)
Q Consensus       204 --Li~d~~~LlLDEP~  217 (229)
                        .+-++.+|+||||+
T Consensus       154 ~~~v~~~r~L~LDEPt  169 (259)
T COG4559         154 WPPVPSGRWLFLDEPT  169 (259)
T ss_pred             cCCCCCCceEEecCCc
Confidence              44455688888885

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.88  E-value=8.5e-23  Score=171.54  Aligned_cols=96  Identities=17%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      +|+++||++.|++......+|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..     .
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER   77 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence            47899999999752111237999999999999999999999999999999999999   99997 888876422     1


Q ss_pred             --HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          151 --HARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       151 --~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                        .++..+.+.+|..   ..+++.+|+.+.
T Consensus        78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  107 (221)
T TIGR02211        78 AKLRNKKLGFIYQFHHLLPDFTALENVAMP  107 (221)
T ss_pred             HHHHHhcEEEEecccccCCCCcHHHHHHHH
Confidence              1113344444443   236899998763

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.88  E-value=6.4e-23  Score=184.39  Aligned_cols=94  Identities=16%  Similarity=0.272  Sum_probs=76.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~  154 (229)
                      +|+++|+++.|++..    +|+++||+|.+||+++|+||||||||||+|+|+|+++   |++|. .++|+++... ..++
T Consensus         2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r   74 (353)
T PRK10851          2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR   74 (353)
T ss_pred             EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence            489999999998754    8999999999999999999999999999999999999   99997 8888764321 1223


Q ss_pred             CCCcccCcc---hhhhHHHHHHcccc
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQGS  177 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~~~  177 (229)
                      .+.+.||.+   +.+|+.+|+.++..
T Consensus        75 ~i~~v~Q~~~l~p~~tv~eni~~~~~  100 (353)
T PRK10851         75 KVGFVFQHYALFRHMTVFDNIAFGLT  100 (353)
T ss_pred             CEEEEecCcccCCCCcHHHHHHhhhh
Confidence            455555544   34899999998643

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.88  E-value=9.5e-23  Score=169.43  Aligned_cols=143  Identities=20%  Similarity=0.141  Sum_probs=96.5

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhc
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARR  154 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~  154 (229)
                      |+++|+++.|++..    +|+++||+|.+|+++||+|+||||||||+++|+|+++   |++|. .++|.++..  ...+.
T Consensus         1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (201)
T cd03231           1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR   73 (201)
T ss_pred             CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence            47899999998754    7999999999999999999999999999999999999   99997 788876421  12223


Q ss_pred             CCCcccCcc---hhhhHHHHHHccccccC---------------------CCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNY  210 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~  210 (229)
                      ++.+.+|..   ..+|+.+|+.+......                     ..++.++.+++..+.++..+++++++|+|+
T Consensus        74 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  153 (201)
T cd03231          74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT  153 (201)
T ss_pred             heEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            343333332   33789999876432110                     012223344444444444555555555555


Q ss_pred             eeecccCHHHHHHHHhh
Q 027060          211 LFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       211 LlLDEP~~~~l~~~l~~  227 (229)
                      ..||...++.+.+++..
T Consensus       154 ~~LD~~~~~~l~~~l~~  170 (201)
T cd03231         154 TALDKAGVARFAEAMAG  170 (201)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            55555567777777653

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.88  E-value=6.5e-23  Score=177.71  Aligned_cols=94  Identities=20%  Similarity=0.280  Sum_probs=73.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      +++|+++||++.|++..    +|+++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|+++..    
T Consensus         5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   77 (269)
T PRK11831          5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS   77 (269)
T ss_pred             cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence            45899999999998654    8999999999999999999999999999999999999   99997 888865421    


Q ss_pred             -H-HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          150 -A-HARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       150 -~-~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                       . ..+..+.+.+|..   ..+|+.+|+.++
T Consensus        78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~  108 (269)
T PRK11831         78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYP  108 (269)
T ss_pred             hHHHHhhcEEEEecccccCCCCCHHHHHHHH
Confidence             1 1122343444433   236899998753

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.88  E-value=6.8e-23  Score=171.20  Aligned_cols=144  Identities=19%  Similarity=0.205  Sum_probs=95.6

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------H
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------A  150 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------~  150 (229)
                      |+++|+++.|++..   .+|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..      .
T Consensus         1 l~~~~l~~~~~~~~---~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   74 (214)
T cd03292           1 IEFINVTKTYPNGT---AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP   74 (214)
T ss_pred             CEEEEEEEEeCCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence            46899999996421   27999999999999999999999999999999999999   99997 788875321      1


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      ..+..+.+.+|.+   ..+++.+|+.++.....                           ..++.++.+++..+.++..+
T Consensus        75 ~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  154 (214)
T cd03292          75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS  154 (214)
T ss_pred             HHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence            1223444444443   23689999876432110                           01122333444444444445


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++++|+|+..||...++.+.+++..
T Consensus       155 p~llllDEPt~~LD~~~~~~~~~~l~~  181 (214)
T cd03292         155 PTILIADEPTGNLDPDTTWEIMNLLKK  181 (214)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            555555555555555567777776653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.88  E-value=7.8e-23  Score=170.61  Aligned_cols=142  Identities=15%  Similarity=0.196  Sum_probs=97.4

Q ss_pred             EEeeeeEEcCc--cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        79 ~~~~ls~~y~~--~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      +++|+++.|++  ..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus         1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (211)
T cd03225           1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL   73 (211)
T ss_pred             CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence            36899999976  43    7999999999999999999999999999999999999   99997 888865421   122


Q ss_pred             hcCCCcccCcc----hhhhHHHHHHcccccc---------------------------CCCCCCCCCCchhhhhhccCCc
Q 027060          153 RRGAPWTFNPL----LLLNCLKNLRNQGSVY---------------------------APSFDHGVGDPVEDDILVGLQH  201 (229)
Q Consensus       153 ~~~~~~~~~~~----~~~tv~e~l~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~~~  201 (229)
                      +..+.+.+|..    ...++.+|+.+.....                           ...++.++.+++..+.++..++
T Consensus        74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p  153 (211)
T cd03225          74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP  153 (211)
T ss_pred             HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            23344444442    2368888887532110                           0012234445555555555566


Q ss_pred             cEEEecCCeeeecccCHHHHHHHHhh
Q 027060          202 KVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       202 rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++++|+|+..||...+..+.+++..
T Consensus       154 ~llllDEPt~~LD~~~~~~~~~~l~~  179 (211)
T cd03225         154 DILLLDEPTAGLDPAGRRELLELLKK  179 (211)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            66666666666666677777777653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=9.2e-23  Score=177.33  Aligned_cols=145  Identities=17%  Similarity=0.206  Sum_probs=99.2

Q ss_pred             CeEEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060           76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~  150 (229)
                      ++|+++|+++.|++ ..    +|+|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..   .
T Consensus         3 ~~l~~~~l~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   75 (274)
T PRK13647          3 NIIEVEDLHFRYKDGTK----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEK   75 (274)
T ss_pred             ceEEEEEEEEEeCCCCe----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence            47999999999963 33    8999999999999999999999999999999999999   99997 888875421   1


Q ss_pred             HhhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          151 HARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 ~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+..+.+.+|.+    ...++.+|+.++.....                           ..++.++.+++..+.++..
T Consensus        76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~  155 (274)
T PRK13647         76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM  155 (274)
T ss_pred             HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            1223344555543    22689999986432110                           0122233444444444445


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|+|+..||...+.++.+++..
T Consensus       156 ~p~llllDEPt~~LD~~~~~~l~~~l~~  183 (274)
T PRK13647        156 DPDVIVLDEPMAYLDPRGQETLMEILDR  183 (274)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            5555555555555555567777777653

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.2e-22  Score=174.11  Aligned_cols=95  Identities=18%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCH
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDP  147 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~  147 (229)
                      |+.+|+++||++.|++..    +|+|+||+|.+||+++|+|+||||||||+++|+|+++   |+     +|. .++|+++
T Consensus         1 ~~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i   73 (253)
T PRK14267          1 MKFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNI   73 (253)
T ss_pred             CcceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEc
Confidence            356899999999998654    8999999999999999999999999999999999998   74     897 8888764


Q ss_pred             H-----HHHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          148 K-----EAHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       148 ~-----~~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      .     ....+..+.+.+|..   ..+|+.+|+.++
T Consensus        74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~  109 (253)
T PRK14267         74 YSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIG  109 (253)
T ss_pred             cccccChHHHhhceeEEecCCccCCCCcHHHHHHHH
Confidence            2     112233444444443   236899998764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.88  E-value=6.1e-23  Score=165.47  Aligned_cols=122  Identities=18%  Similarity=0.238  Sum_probs=100.6

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~  152 (229)
                      |+++|+++.|++..    +++++||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.++..    ...
T Consensus         1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~   73 (163)
T cd03216           1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR   73 (163)
T ss_pred             CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH
Confidence            47899999998754    8999999999999999999999999999999999999   99997 788765421    111


Q ss_pred             hcCCCcccCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       153 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..+.+.++                     ++.++.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus        74 ~~~i~~~~q---------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~  127 (163)
T cd03216          74 RAGIAMVYQ---------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR  127 (163)
T ss_pred             hcCeEEEEe---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            222333333                     677888888888888899999999999999999999999888864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1e-22  Score=173.04  Aligned_cols=94  Identities=19%  Similarity=0.227  Sum_probs=73.9

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      +++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..    
T Consensus         3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~   75 (237)
T PRK11614          3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA   75 (237)
T ss_pred             ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence            45799999999998654    8999999999999999999999999999999999999   99997 888875421    


Q ss_pred             HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          150 AHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ...+..+.+.++..   ..+++.+|+.+.
T Consensus        76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  104 (237)
T PRK11614         76 KIMREAVAIVPEGRRVFSRMTVEENLAMG  104 (237)
T ss_pred             HHHHhCEEEeccCcccCCCCcHHHHHHHh
Confidence            11233344444332   336888988764

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=9.5e-23  Score=173.51  Aligned_cols=144  Identities=18%  Similarity=0.245  Sum_probs=96.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      +|+++|+++.|++..    +|+|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..     .
T Consensus         1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (240)
T PRK09493          1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER   73 (240)
T ss_pred             CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence            478999999998654    8999999999999999999999999999999999999   99997 888875421     1


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHcccc-ccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQGS-VYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~-~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+..+.+.+|..   ..+++.+|+.++.. ...                           ..++.++.+++..+.++..
T Consensus        74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~  153 (240)
T PRK09493         74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV  153 (240)
T ss_pred             HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence            2223344444432   33689999876421 000                           0112233334444444444


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++++++|+|+..||...+..+.+++..
T Consensus       154 ~p~llllDEP~~~LD~~~~~~l~~~l~~  181 (240)
T PRK09493        154 KPKLMLFDEPTSALDPELRHEVLKVMQD  181 (240)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            5555555555555555567777777653

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.3e-22  Score=173.76  Aligned_cols=94  Identities=23%  Similarity=0.279  Sum_probs=74.0

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~  148 (229)
                      |++|+++|+++.|++..    +|+++||+|++|++++|+|+||||||||+++|+|+++   |     ++|. .++|.++.
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~   73 (250)
T PRK14247          1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF   73 (250)
T ss_pred             CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence            45799999999998754    8999999999999999999999999999999999987   5     5897 88887542


Q ss_pred             H---HHhhcCCCcccCcch---hhhHHHHHHcc
Q 027060          149 E---AHARRGAPWTFNPLL---LLNCLKNLRNQ  175 (229)
Q Consensus       149 ~---~~~~~~~~~~~~~~~---~~tv~e~l~~~  175 (229)
                      .   ...+..+.+.+|.+.   .+|+.+|+.++
T Consensus        74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~  106 (250)
T PRK14247         74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALG  106 (250)
T ss_pred             cCCHHHHhccEEEEeccCccCCCCcHHHHHHHH
Confidence            1   122334555555432   37899999764

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.88  E-value=9.5e-23  Score=169.38  Aligned_cols=141  Identities=13%  Similarity=0.094  Sum_probs=94.5

Q ss_pred             EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH---H----HH
Q 027060           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---E----AH  151 (229)
Q Consensus        80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---~----~~  151 (229)
                      ++||++.|++..    +|+++||+|.+||+++|+||||||||||+++|+|+++   |++|+ .++|.++.   .    ..
T Consensus         1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~   73 (206)
T TIGR03608         1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF   73 (206)
T ss_pred             CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence            478999998654    8999999999999999999999999999999999999   99997 88887631   1    12


Q ss_pred             hhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCc
Q 027060          152 ARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQH  201 (229)
Q Consensus       152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~  201 (229)
                      .+..+.+.++..   ...|+.+|+.+......                           ..++.++.+++..+.++..++
T Consensus        74 ~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p  153 (206)
T TIGR03608        74 RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP  153 (206)
T ss_pred             HHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            233444444443   23789898876321110                           011223334444444444455


Q ss_pred             cEEEecCCeeeecccCHHHHHHHHhh
Q 027060          202 KVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       202 rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++++|+|+..||...+..+.+++..
T Consensus       154 ~llllDEPt~~LD~~~~~~l~~~l~~  179 (206)
T TIGR03608       154 PLILADEPTGSLDPKNRDEVLDLLLE  179 (206)
T ss_pred             CEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            55555555555555567777777653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.88  E-value=1.5e-22  Score=172.36  Aligned_cols=93  Identities=24%  Similarity=0.365  Sum_probs=73.9

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      ++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..    .
T Consensus         1 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   73 (242)
T TIGR03411         1 PILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ   73 (242)
T ss_pred             CeEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence            3689999999998654    8999999999999999999999999999999999999   99997 888875421    1


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ..+.++.+.+|..   ..+|+.+|+.++
T Consensus        74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~  101 (242)
T TIGR03411        74 IARAGIGRKFQKPTVFENLTVFENLELA  101 (242)
T ss_pred             HHhcCeeEeccccccCCCCCHHHHHHHh
Confidence            2233444444443   337999998764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.87  E-value=1e-22  Score=172.10  Aligned_cols=143  Identities=16%  Similarity=0.209  Sum_probs=95.5

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~  152 (229)
                      |+++||++.|++..    +|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .++|.++..    ...
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (230)
T TIGR03410         1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA   73 (230)
T ss_pred             CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence            47899999998654    8999999999999999999999999999999999999   99997 888865321    111


Q ss_pred             hcCCCcccCc---chhhhHHHHHHccccccCC-------------------------CCCCCCCCchhhhhhccCCccEE
Q 027060          153 RRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-------------------------SFDHGVGDPVEDDILVGLQHKVV  204 (229)
Q Consensus       153 ~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~~~rvL  204 (229)
                      +..+.+.+|.   +..+++.+|+.++...+..                         .++.++.+++..+.++..+++++
T Consensus        74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il  153 (230)
T TIGR03410        74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL  153 (230)
T ss_pred             HhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            2334344433   3346899998764321110                         01122333333344444455555


Q ss_pred             EecCCeeeecccCHHHHHHHHhh
Q 027060          205 IVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       205 i~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++|+|+..||...+..+.+++.+
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~  176 (230)
T TIGR03410       154 LLDEPTEGIQPSIIKDIGRVIRR  176 (230)
T ss_pred             EecCCcccCCHHHHHHHHHHHHH
Confidence            55555555555567777777654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.8e-22  Score=175.91  Aligned_cols=148  Identities=14%  Similarity=0.125  Sum_probs=100.3

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      ++|+++||++.|++.. ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..   ..
T Consensus         3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD   78 (279)
T ss_pred             ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            4799999999997421 1137999999999999999999999999999999999999   99997 888876421   12


Q ss_pred             hhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          152 ARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       152 ~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      .+..+++.+|.+    ...|+.+|+.++.....                           ..++.++.+++..+.++..+
T Consensus        79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~  158 (279)
T PRK13650         79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR  158 (279)
T ss_pred             HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            223455556553    22699999987532110                           01122334444444444455


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|+++..||...++.+.+++..
T Consensus       159 p~lLlLDEPt~~LD~~~~~~l~~~l~~  185 (279)
T PRK13650        159 PKIIILDEATSMLDPEGRLELIKTIKG  185 (279)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            555555555555555567777776643

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.6e-22  Score=186.40  Aligned_cols=146  Identities=21%  Similarity=0.241  Sum_probs=106.4

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----  148 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----  148 (229)
                      ..++++++|++|+|++..    +|+++||+|.+||+++|+|.||||||||+|+|+|.++   |++|+ .++|+...    
T Consensus         5 ~~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp   77 (500)
T COG1129           5 TPPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSP   77 (500)
T ss_pred             ccceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCH
Confidence            345899999999999876    9999999999999999999999999999999999999   99997 88988532    


Q ss_pred             HHHhhcCCCcccCcchh---hhHHHHHHccccccCC--CCC----------------------CCCCCchhhhhhccCCc
Q 027060          149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--SFD----------------------HGVGDPVEDDILVGLQH  201 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--~~~----------------------~~~~~~~~~~l~~~~~~  201 (229)
                      ......|+..++|...+   +||.||+.++.....+  ..+                      ....+.......+.+.+
T Consensus        78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA  157 (500)
T COG1129          78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA  157 (500)
T ss_pred             HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence            23456788777776654   9999999987654331  111                      01111112222233345


Q ss_pred             cEEEecCCeeeecccC----HHHHHHHHh
Q 027060          202 KVVIVDGNYLFLDGGV----WKDVSSMFD  226 (229)
Q Consensus       202 rvLi~d~~~LlLDEP~----~~~l~~~l~  226 (229)
                      |.+..++.+++||||+    .++...+|+
T Consensus       158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~  186 (500)
T COG1129         158 RALSFDARVLILDEPTAALTVKETERLFD  186 (500)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            5577788888888884    444444443

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.87  E-value=1.5e-22  Score=171.99  Aligned_cols=91  Identities=26%  Similarity=0.386  Sum_probs=71.8

Q ss_pred             EEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------  149 (229)
Q Consensus        78 i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------  149 (229)
                      |+++||++.|++ ..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..      
T Consensus         1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   73 (241)
T cd03256           1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL   73 (241)
T ss_pred             CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence            468999999986 43    8999999999999999999999999999999999999   99997 888875421      


Q ss_pred             HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          150 AHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ...+..+.+.+|..   ..+|+.+|+.+.
T Consensus        74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  102 (241)
T cd03256          74 RQLRRQIGMIFQQFNLIERLSVLENVLSG  102 (241)
T ss_pred             HHHHhccEEEcccCcccccCcHHHHHHhh
Confidence            11233444444443   337899998753

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.4e-22  Score=176.56  Aligned_cols=151  Identities=16%  Similarity=0.184  Sum_probs=103.9

Q ss_pred             CCCeEEEeeeeEEcCcccc--ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-
Q 027060           74 EIPVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-  149 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~--~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-  149 (229)
                      |.++|+++|+++.|++...  ...+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++.. 
T Consensus         1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~   77 (280)
T PRK13633          1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDE   77 (280)
T ss_pred             CCceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccc
Confidence            3568999999999974210  1238999999999999999999999999999999999999   99997 888876532 


Q ss_pred             ---HHhhcCCCcccCcch----hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhh
Q 027060          150 ---AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDI  195 (229)
Q Consensus       150 ---~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l  195 (229)
                         ...+..+.+.+|.+.    ..++.+|+.++.....                           ..++.++.+++..+.
T Consensus        78 ~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar  157 (280)
T PRK13633         78 ENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAG  157 (280)
T ss_pred             ccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHH
Confidence               112334445555431    2478888876432110                           112234445555555


Q ss_pred             hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++...++++++|+|+..||...+..+.+++..
T Consensus       158 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~  189 (280)
T PRK13633        158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKE  189 (280)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            55556666666666666666678888777754

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.4e-22  Score=176.77  Aligned_cols=147  Identities=18%  Similarity=0.176  Sum_probs=103.3

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      ++|+++||++.|++..  ..+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..   ..
T Consensus         4 ~~l~~~~l~~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13635          4 EIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD   78 (279)
T ss_pred             ceEEEEEEEEEeCCCC--ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            4799999999997521  127999999999999999999999999999999999999   99997 888876421   11


Q ss_pred             hhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          152 ARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       152 ~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      .+..+.+.+|.+    ...|+.+|+.++.....                           ..++.++.+++..+.++..+
T Consensus        79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  158 (279)
T PRK13635         79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ  158 (279)
T ss_pred             HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            223455555543    22689999976422110                           01223444555555555556


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|+|+..||...+..+.+++..
T Consensus       159 p~lllLDEPt~gLD~~~~~~l~~~l~~  185 (279)
T PRK13635        159 PDIIILDEATSMLDPRGRREVLETVRQ  185 (279)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            666666666666666678888777753

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.87  E-value=3.1e-22  Score=169.01  Aligned_cols=145  Identities=19%  Similarity=0.224  Sum_probs=96.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++|+++.|++..   .+++++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus         2 ~l~~~~l~~~~~~~~---~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   75 (229)
T cd03254           2 EIEFENVNFSYDEKK---PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL   75 (229)
T ss_pred             eEEEEEEEEecCCCC---ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence            378999999997421   27999999999999999999999999999999999999   99997 888876532   112


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.++...+  .++.+|+.+......                                ..++.++.+++..+.++.
T Consensus        76 ~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~  155 (229)
T cd03254          76 RSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML  155 (229)
T ss_pred             hhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence            2334444444322  588888876432110                                112223334444444444


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++|+|+..||...+..+.+++..
T Consensus       156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~  184 (229)
T cd03254         156 RDPKILILDEATSNIDTETEKLIQEALEK  184 (229)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            45555555555555555567777777654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.87  E-value=1.3e-22  Score=168.00  Aligned_cols=143  Identities=17%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hhhc
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HARR  154 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~~~  154 (229)
                      |+++|+++.|++..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++...  ..+.
T Consensus         1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (198)
T TIGR01189         1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR   73 (198)
T ss_pred             CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence            47899999998754    8999999999999999999999999999999999999   99997 8888754221  1122


Q ss_pred             CCCcccCc---chhhhHHHHHHccccccCC-----------------------CCCCCCCCchhhhhhccCCccEEEecC
Q 027060          155 GAPWTFNP---LLLLNCLKNLRNQGSVYAP-----------------------SFDHGVGDPVEDDILVGLQHKVVIVDG  208 (229)
Q Consensus       155 ~~~~~~~~---~~~~tv~e~l~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~rvLi~d~  208 (229)
                      .+.+.++.   +..+|+.+|+.+.......                       .++.++.+++..+.++..+++++++|+
T Consensus        74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  153 (198)
T TIGR01189        74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE  153 (198)
T ss_pred             heEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            33333333   2237888888754221110                       111233333333344444445555555


Q ss_pred             CeeeecccCHHHHHHHHhh
Q 027060          209 NYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       209 ~~LlLDEP~~~~l~~~l~~  227 (229)
                      |+..||...+..+.+++..
T Consensus       154 Pt~~LD~~~~~~l~~~l~~  172 (198)
T TIGR01189       154 PTTALDKAGVALLAGLLRA  172 (198)
T ss_pred             CCcCCCHHHHHHHHHHHHH
Confidence            5555555557777766653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.8e-22  Score=175.68  Aligned_cols=147  Identities=16%  Similarity=0.178  Sum_probs=100.0

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A  150 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~  150 (229)
                      |.+|+++|+++.|++..   .+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|+++..   .
T Consensus         1 ~~~l~~~~l~~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (277)
T PRK13652          1 MHLIETRDLCYSYSGSK---EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR   74 (277)
T ss_pred             CceEEEEEEEEEeCCCC---ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            46799999999996421   27999999999999999999999999999999999999   99997 888875421   1


Q ss_pred             HhhcCCCcccCcc----hhhhHHHHHHcccccc---------------------------CCCCCCCCCCchhhhhhccC
Q 027060          151 HARRGAPWTFNPL----LLLNCLKNLRNQGSVY---------------------------APSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 ~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+..+.+.+|.+    ...|+.+|+.++....                           ...++.++.+++..+.++..
T Consensus        75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~  154 (277)
T PRK13652         75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM  154 (277)
T ss_pred             HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence            1222344444432    2268899987532110                           00122344444444555555


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|+|+..||...+..+.+++..
T Consensus       155 ~p~llilDEPt~gLD~~~~~~l~~~l~~  182 (277)
T PRK13652        155 EPQVLVLDEPTAGLDPQGVKELIDFLND  182 (277)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            5666666666666666567788777754

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.4e-22  Score=176.13  Aligned_cols=144  Identities=17%  Similarity=0.192  Sum_probs=101.2

Q ss_pred             eEEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060           77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      +|+++|+++.|++ ..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..    .
T Consensus         1 ml~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   73 (274)
T PRK13644          1 MIRLENVSYSYPDGTP----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQ   73 (274)
T ss_pred             CEEEEEEEEEcCCCCc----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHH
Confidence            4889999999963 33    7999999999999999999999999999999999999   99997 888875421    1


Q ss_pred             HhhcCCCcccCcc----hhhhHHHHHHcccccc---------------------------CCCCCCCCCCchhhhhhccC
Q 027060          151 HARRGAPWTFNPL----LLLNCLKNLRNQGSVY---------------------------APSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 ~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+..+.+.+|.+    ...++.+|+.++....                           ...++.++.+++..+.++..
T Consensus        74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~  153 (274)
T PRK13644         74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM  153 (274)
T ss_pred             HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence            2223344444442    2268999987643211                           01123344555555555566


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|+|+..||...+..+.+++..
T Consensus       154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~  181 (274)
T PRK13644        154 EPECLIFDEVTSMLDPDSGIAVLERIKK  181 (274)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            6666666666666666677777777653

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.87  E-value=1.3e-22  Score=169.50  Aligned_cols=142  Identities=19%  Similarity=0.202  Sum_probs=97.0

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhc
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARR  154 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~  154 (229)
                      |+++|+++.|++..    +++++||+|++| +++|+||||||||||+++|+|+++   |++|. .++|.++..  ...+.
T Consensus         1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   72 (211)
T cd03264           1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR   72 (211)
T ss_pred             CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence            47899999997654    899999999999 999999999999999999999999   99997 888876432  11122


Q ss_pred             CCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEE
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVV  204 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvL  204 (229)
                      .+.+.+|..   ..+++.+|+.+......                           ..++.++.+++..+.++..+++++
T Consensus        73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  152 (211)
T cd03264          73 RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL  152 (211)
T ss_pred             heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            333444333   33688998875321110                           012223344444444555555556


Q ss_pred             EecCCeeeecccCHHHHHHHHhh
Q 027060          205 IVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       205 i~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++|+|+..||...+..+.+++..
T Consensus       153 llDEPt~~LD~~~~~~l~~~l~~  175 (211)
T cd03264         153 IVDEPTAGLDPEERIRFRNLLSE  175 (211)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHH
Confidence            66666666666667788777764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.87  E-value=8.1e-23  Score=173.31  Aligned_cols=91  Identities=31%  Similarity=0.401  Sum_probs=71.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~  152 (229)
                      |+++|+++.|++..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..    ...
T Consensus         1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (236)
T cd03219           1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA   73 (236)
T ss_pred             CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence            46899999998654    8999999999999999999999999999999999999   99997 888875321    112


Q ss_pred             hcCCCcccCcc---hhhhHHHHHHcc
Q 027060          153 RRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      +.++.+.+|.+   ..+|+.+|+.++
T Consensus        74 ~~~i~~v~q~~~l~~~~tv~~~l~~~   99 (236)
T cd03219          74 RLGIGRTFQIPRLFPELTVLENVMVA   99 (236)
T ss_pred             hcCEEEEecccccccCCCHHHHHHHH
Confidence            23344444443   337899998764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.1e-22  Score=171.58  Aligned_cols=144  Identities=19%  Similarity=0.209  Sum_probs=98.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-------  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-------  148 (229)
                      +|+++|+++.|++..    +|+++||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|.++.       
T Consensus         2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (242)
T PRK11124          2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence            589999999998654    8999999999999999999999999999999999999   99997 88887531       


Q ss_pred             --HHHhhcCCCcccCcch---hhhHHHHHHccc-ccc---------------------------CCCCCCCCCCchhhhh
Q 027060          149 --EAHARRGAPWTFNPLL---LLNCLKNLRNQG-SVY---------------------------APSFDHGVGDPVEDDI  195 (229)
Q Consensus       149 --~~~~~~~~~~~~~~~~---~~tv~e~l~~~~-~~~---------------------------~~~~~~~~~~~~~~~l  195 (229)
                        ....+.++.+.+|...   .+|+.+|+.+.. ...                           ...++.++.+++..+.
T Consensus        75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  154 (242)
T PRK11124         75 KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR  154 (242)
T ss_pred             hhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence              1122234444444432   368899886311 000                           0012223344444444


Q ss_pred             hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++..+++++++|+|+..||...+..+.+++..
T Consensus       155 al~~~p~llilDEPt~~LD~~~~~~l~~~l~~  186 (242)
T PRK11124        155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRE  186 (242)
T ss_pred             HHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence            45555555666666666666567777777653

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.87  E-value=8.2e-23  Score=167.06  Aligned_cols=135  Identities=23%  Similarity=0.275  Sum_probs=106.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC-CCH----HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS-QDP----KE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g-~~~----~~  149 (229)
                      ++++++||+.+|++..    +|+++||+|.+||.-+|||||||||||++.+|+|..+   |+.|. +++| .++    ..
T Consensus         4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~   76 (249)
T COG4674           4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH   76 (249)
T ss_pred             ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence            5799999999999987    9999999999999999999999999999999999999   99998 7777 342    33


Q ss_pred             HHhhcCCCcccCcch---hhhHHHHHHccccccCCCCC-----------------------CCCCCchhhhhhccCCccE
Q 027060          150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD-----------------------HGVGDPVEDDILVGLQHKV  203 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~rv  203 (229)
                      ...+.|++..||.+.   .+||+|||.+........|.                       ....++.+..++-|+++.+
T Consensus        77 ~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwL  156 (249)
T COG4674          77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWL  156 (249)
T ss_pred             HHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhh
Confidence            456788888887765   38999999987655443332                       1123444455555666655


Q ss_pred             -----EEecCCeeeecccC
Q 027060          204 -----VIVDGNYLFLDGGV  217 (229)
Q Consensus       204 -----Li~d~~~LlLDEP~  217 (229)
                           ++.||.+|+||||.
T Consensus       157 EIGMll~Q~P~lLLlDEPv  175 (249)
T COG4674         157 EIGMLLAQDPKLLLLDEPV  175 (249)
T ss_pred             hhheeeccCCcEEEecCcc
Confidence                 88899999999994

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.1e-22  Score=176.25  Aligned_cols=96  Identities=18%  Similarity=0.243  Sum_probs=73.5

Q ss_pred             eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      .|+++||++.|++... ...+|++|||+|.+||++||+|+||||||||+++|+|+++   |++|. .++|.++..     
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL   78 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence            4899999999975211 1238999999999999999999999999999999999999   99997 888876421     


Q ss_pred             HHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060          150 AHARRGAPWTFNPL----LLLNCLKNLRNQ  175 (229)
Q Consensus       150 ~~~~~~~~~~~~~~----~~~tv~e~l~~~  175 (229)
                      ...+..+++.+|.+    ...|+.+|+.++
T Consensus        79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~  108 (287)
T PRK13637         79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFG  108 (287)
T ss_pred             HHHhhceEEEecCchhccccccHHHHHHhH
Confidence            12223344555543    126899999764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.7e-22  Score=175.22  Aligned_cols=144  Identities=17%  Similarity=0.169  Sum_probs=96.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~  150 (229)
                      ||+++||++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|+++.     ..
T Consensus         1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   73 (271)
T PRK13638          1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL   73 (271)
T ss_pred             CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence            489999999998654    8999999999999999999999999999999999999   99997 88887642     11


Q ss_pred             HhhcCCCcccCcch----hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          151 HARRGAPWTFNPLL----LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 ~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+..+.+.+|...    ..++.+|+.++.....                           ..++.++.+++..+.++..
T Consensus        74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~  153 (271)
T PRK13638         74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL  153 (271)
T ss_pred             HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence            12233444444432    2457777765311100                           0122334444444444455


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|+|+..||...+..+.+++..
T Consensus       154 ~p~lllLDEPt~~LD~~~~~~l~~~l~~  181 (271)
T PRK13638        154 QARYLLLDEPTAGLDPAGRTQMIAIIRR  181 (271)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            5555555555555555567777777654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.9e-22  Score=171.73  Aligned_cols=147  Identities=15%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCH
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDP  147 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~  147 (229)
                      +.++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |     ++|. .++|.++
T Consensus         1 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i   73 (251)
T PRK14270          1 MKIKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNI   73 (251)
T ss_pred             CccEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEec
Confidence            346899999999998654    8999999999999999999999999999999999987   5     6897 8888764


Q ss_pred             HH-----HHhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCC
Q 027060          148 KE-----AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVG  188 (229)
Q Consensus       148 ~~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~  188 (229)
                      ..     ...+..+.+.+|...  ..|+.+|+.+......                                ..++.++.
T Consensus        74 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  153 (251)
T PRK14270         74 YDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ  153 (251)
T ss_pred             ccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence            21     112233444443322  2788898876422110                                01112233


Q ss_pred             CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++..+.++..+++++++|+++..||...+..+.+++..
T Consensus       154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~  192 (251)
T PRK14270        154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE  192 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            344444444455566666666666666667777777654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.4e-22  Score=176.06  Aligned_cols=147  Identities=15%  Similarity=0.139  Sum_probs=97.0

Q ss_pred             eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------
Q 027060           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------  148 (229)
                      .|+++||++.|++... ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|+++.      
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK   78 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4899999999975211 1238999999999999999999999999999999999999   99997 88887542      


Q ss_pred             -HHHhhcCCCcccCcc----hhhhHHHHHHccccccC----------------------------CCCCCCCCCchhhhh
Q 027060          149 -EAHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA----------------------------PSFDHGVGDPVEDDI  195 (229)
Q Consensus       149 -~~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~----------------------------~~~~~~~~~~~~~~l  195 (229)
                       ....+..+++.+|.+    ...|+.+|+.++.....                            ..++.++.+++..+.
T Consensus        79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr  158 (290)
T PRK13634         79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG  158 (290)
T ss_pred             hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence             112233445555542    12699999976522110                            011123333444444


Q ss_pred             hccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      ++..++++|++|+++..||......+.+++.
T Consensus       159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~  189 (290)
T PRK13634        159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFY  189 (290)
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            4444555555555555555556777776664

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.4e-22  Score=172.99  Aligned_cols=145  Identities=15%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH-
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK-  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~-  148 (229)
                      .+|+++|+++.|++..    +|+++||+|++||+++|+|+||||||||+++|+|+++   |     ++|. .++|.++. 
T Consensus         3 ~~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~   75 (258)
T PRK14241          3 KRIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYG   75 (258)
T ss_pred             ccEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEeccc
Confidence            4699999999998754    8999999999999999999999999999999999987   5     6897 88887542 


Q ss_pred             ----HHHhhcCCCcccCcc---hhhhHHHHHHccccccC--------------------------------CCCCCCCCC
Q 027060          149 ----EAHARRGAPWTFNPL---LLLNCLKNLRNQGSVYA--------------------------------PSFDHGVGD  189 (229)
Q Consensus       149 ----~~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~  189 (229)
                          ....+..+.+.++..   ..+|+.+|+.++.....                                ..++.++.+
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (258)
T PRK14241         76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ  155 (258)
T ss_pred             cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence                112233444444443   23688888875421110                                001122233


Q ss_pred             chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++..+.++..+++++++|+|+..||......+.+++..
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (258)
T PRK14241        156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE  193 (258)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            33334444445555555555555555567777777654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.3e-22  Score=175.96  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=73.5

Q ss_pred             eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      +|+++|+++.|++... ...+|+|+||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|+++..     
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK   78 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            6899999999974210 1137999999999999999999999999999999999999   99997 888875421     


Q ss_pred             --HHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060          150 --AHARRGAPWTFNPL----LLLNCLKNLRNQ  175 (229)
Q Consensus       150 --~~~~~~~~~~~~~~----~~~tv~e~l~~~  175 (229)
                        ...+.++++.+|.+    ..+++.+|+.++
T Consensus        79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~  110 (287)
T PRK13641         79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG  110 (287)
T ss_pred             hHHHHHhceEEEEeChhhhhccchHHHHHHHH
Confidence              12233455555543    126899998754

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.87  E-value=2.2e-22  Score=172.08  Aligned_cols=92  Identities=22%  Similarity=0.323  Sum_probs=72.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCHHH-
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDPKE-  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~~~-  149 (229)
                      +|+++||++.|++..    +++|+||+|++||+++|+|+||||||||+++|+|+++   |+     +|. .++|+++.. 
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~   73 (247)
T TIGR00972         1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK   73 (247)
T ss_pred             CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence            478999999998654    8999999999999999999999999999999999999   88     997 888876431 


Q ss_pred             ----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                          ...+..+.+.+|...+  .++.+|+.+.
T Consensus        74 ~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~  105 (247)
T TIGR00972        74 KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG  105 (247)
T ss_pred             ccchHHHHhheEEEecCcccCCCCHHHHHHhH
Confidence                1222334444443221  7888998764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.4e-22  Score=175.51  Aligned_cols=145  Identities=16%  Similarity=0.198  Sum_probs=100.5

Q ss_pred             CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----  148 (229)
                      ++|+++|+++.|+ +..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++.     
T Consensus         4 ~~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~   76 (283)
T PRK13636          4 YILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKG   76 (283)
T ss_pred             ceEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcch
Confidence            4799999999996 333    8999999999999999999999999999999999999   99997 88887642     


Q ss_pred             HHHhhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhc
Q 027060          149 EAHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      ....+..+++.+|.+    ...|+.+|+.++.....                           ..++.++.+++..+.++
T Consensus        77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL  156 (283)
T PRK13636         77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL  156 (283)
T ss_pred             HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            112223344555443    22689999976421110                           01223444455555555


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++|+++..||...+..+.+++..
T Consensus       157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~  186 (283)
T PRK13636        157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVE  186 (283)
T ss_pred             HcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            555666666666666666667777776653

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.87  E-value=3.5e-22  Score=169.21  Aligned_cols=145  Identities=18%  Similarity=0.174  Sum_probs=97.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|+++   |++|. .++|+++..   ...+
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   75 (234)
T cd03251           1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR   75 (234)
T ss_pred             CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence            47899999997641  127899999999999999999999999999999999999   99997 888875432   1122


Q ss_pred             cCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhccC
Q 027060          154 RGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       154 ~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+.+.++...  ..++.+|+.+......                                ..++.++.+++..+.++..
T Consensus        76 ~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  155 (234)
T cd03251          76 RQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK  155 (234)
T ss_pred             hhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence            23444443322  2689999976432100                                0122233444444444555


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++++++|+|+..||...+..+.+++..
T Consensus       156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~  183 (234)
T cd03251         156 DPPILILDEATSALDTESERLVQAALER  183 (234)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            5566666666666666667777777654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.7e-22  Score=171.34  Aligned_cols=94  Identities=18%  Similarity=0.302  Sum_probs=73.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~  148 (229)
                      .++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |     ++|. .++|+++.
T Consensus         5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273          5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence            45799999999998654    8999999999999999999999999999999999998   7     4786 88887542


Q ss_pred             H-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          149 E-----AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       149 ~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      .     ...+.++.+.+|...  ..|+.+|+.++
T Consensus        78 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~  111 (254)
T PRK14273         78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYG  111 (254)
T ss_pred             cccccHHHHhhceEEEeeccccccCcHHHHHHHH
Confidence            1     122334545454432  27999999765

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.4e-22  Score=171.74  Aligned_cols=144  Identities=17%  Similarity=0.184  Sum_probs=98.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      +|+++|++++|++..    +|+++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus         2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (255)
T PRK11231          2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL   74 (255)
T ss_pred             EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence            589999999998754    8999999999999999999999999999999999999   99997 888876432   111


Q ss_pred             hcCCCcccCcc---hhhhHHHHHHccccc----cC---------------------------CCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPL---LLLNCLKNLRNQGSV----YA---------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~---~~~tv~e~l~~~~~~----~~---------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.+|..   ..+++.+|+.++...    ..                           ..++.++.+++..+.++.
T Consensus        75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~  154 (255)
T PRK11231         75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA  154 (255)
T ss_pred             hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh
Confidence            22344444432   236888998764210    00                           011223344444444455


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++|+|+..||...+..+.+++..
T Consensus       155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~  183 (255)
T PRK11231        155 QDTPVVLLDEPTTYLDINHQVELMRLMRE  183 (255)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            55555666666666666567777777653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.4e-22  Score=175.90  Aligned_cols=97  Identities=15%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------
Q 027060           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------  148 (229)
                      ||+++|+++.|+.... ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++.      
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   77 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK   77 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4899999999974311 1137999999999999999999999999999999999999   99997 88887542      


Q ss_pred             -HHHhhcCCCcccCcc--h--hhhHHHHHHccc
Q 027060          149 -EAHARRGAPWTFNPL--L--LLNCLKNLRNQG  176 (229)
Q Consensus       149 -~~~~~~~~~~~~~~~--~--~~tv~e~l~~~~  176 (229)
                       ....+..+++.||.+  .  ..++.+|+.++.
T Consensus        78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~  110 (288)
T PRK13643         78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP  110 (288)
T ss_pred             cHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence             112233445555543  1  268999998753

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.5e-22  Score=172.30  Aligned_cols=93  Identities=24%  Similarity=0.330  Sum_probs=74.3

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      ++|+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..    .
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   76 (255)
T PRK11300          4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ   76 (255)
T ss_pred             ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence            4799999999998654    8999999999999999999999999999999999999   99997 888875421    1


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ..+.++.+.+|..   ..+|+.+|+.++
T Consensus        77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~  104 (255)
T PRK11300         77 IARMGVVRTFQHVRLFREMTVIENLLVA  104 (255)
T ss_pred             HHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence            2233444444443   337999998864

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.3e-22  Score=176.52  Aligned_cols=67  Identities=13%  Similarity=0.334  Sum_probs=57.9

Q ss_pred             eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      +|+++||++.|++... ...+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.+
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~   70 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKD   70 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEecee
Confidence            5899999999975311 1237999999999999999999999999999999999999   99997 777653

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.87  E-value=3.5e-22  Score=172.20  Aligned_cols=92  Identities=17%  Similarity=0.237  Sum_probs=72.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      +|+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus         2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~   74 (258)
T PRK13548          2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL   74 (258)
T ss_pred             eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence            589999999998754    8999999999999999999999999999999999999   99997 888865321   111


Q ss_pred             hcCCCcccCcc---hhhhHHHHHHcc
Q 027060          153 RRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      +..+.+.+|..   ..+|+.+|+.++
T Consensus        75 ~~~i~~~~q~~~~~~~~tv~e~l~~~  100 (258)
T PRK13548         75 ARRRAVLPQHSSLSFPFTVEEVVAMG  100 (258)
T ss_pred             hhheEEEccCCcCCCCCCHHHHHHhh
Confidence            22333444433   337899998764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.87  E-value=2.6e-22  Score=188.31  Aligned_cols=147  Identities=17%  Similarity=0.125  Sum_probs=101.0

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----  148 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----  148 (229)
                      +.++|+++|+++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++.    
T Consensus         8 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~   80 (510)
T PRK15439          8 APPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP   80 (510)
T ss_pred             CCceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            556899999999998754    8999999999999999999999999999999999999   99997 78886532    


Q ss_pred             HHHhhcCCCcccCcc---hhhhHHHHHHccccccC-----------------------CCCCCCCCCchhhhhhccCCcc
Q 027060          149 EAHARRGAPWTFNPL---LLLNCLKNLRNQGSVYA-----------------------PSFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      ....+.++++.+|..   ..+++.+|+.++.....                       ..++.++.+++..+.++...++
T Consensus        81 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~  160 (510)
T PRK15439         81 AKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR  160 (510)
T ss_pred             HHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            112223444445443   33799999887532110                       0122334444444444444555


Q ss_pred             EEEecCCeeeecccCHHHHHHHHhh
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|++|||+..||......+.+++..
T Consensus       161 lllLDEPt~~LD~~~~~~l~~~l~~  185 (510)
T PRK15439        161 ILILDEPTASLTPAETERLFSRIRE  185 (510)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH
Confidence            5555555555555567777776653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.7e-22  Score=171.12  Aligned_cols=97  Identities=21%  Similarity=0.278  Sum_probs=72.0

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~--  149 (229)
                      .++|+++||++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|++...  .|++|. .++|+++..  
T Consensus         4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   79 (253)
T PRK14242          4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH   79 (253)
T ss_pred             CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence            36899999999998654    899999999999999999999999999999999986310  147897 888876421  


Q ss_pred             ---HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                         ...+..+.+.+|...+  .|+.+|+.++
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~  110 (253)
T PRK14242         80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYG  110 (253)
T ss_pred             cCHHHHhhcEEEEecCCCCCcCcHHHHHHHH
Confidence               1222334444443221  5888988764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.87  E-value=4.5e-22  Score=171.61  Aligned_cols=146  Identities=18%  Similarity=0.235  Sum_probs=97.8

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHH-
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKE-  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~-  149 (229)
                      .++|+++||++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |+   +|. .++|.++.. 
T Consensus         2 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~   74 (262)
T PRK09984          2 QTIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQRE   74 (262)
T ss_pred             CcEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEecccc
Confidence            45899999999998654    8999999999999999999999999999999999998   76   486 888875421 


Q ss_pred             -------HHhhcCCCcccCcc---hhhhHHHHHHccccccC-----------------------------------CCCC
Q 027060          150 -------AHARRGAPWTFNPL---LLLNCLKNLRNQGSVYA-----------------------------------PSFD  184 (229)
Q Consensus       150 -------~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~-----------------------------------~~~~  184 (229)
                             ...+..+.+.+|..   ..+|+.+|+.++.....                                   ..++
T Consensus        75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS  154 (262)
T PRK09984         75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLS  154 (262)
T ss_pred             cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccC
Confidence                   11223344444443   33799999976421000                                   0011


Q ss_pred             CCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       185 ~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++.+++..+.++...+++|++|+|+-.||...++.+.+++..
T Consensus       155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  197 (262)
T PRK09984        155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD  197 (262)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHH
Confidence            2333444444444445555555555555555567777777654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.87  E-value=6.5e-22  Score=166.07  Aligned_cols=145  Identities=16%  Similarity=0.172  Sum_probs=97.5

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|++..  ..+|+|+||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++..   ...+
T Consensus         3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (220)
T cd03245           3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR   77 (220)
T ss_pred             EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence            78999999997521  127999999999999999999999999999999999999   99997 888876432   1112


Q ss_pred             cCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhccC
Q 027060          154 RGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       154 ~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+.+.+|...  ..++.+|+.+......                                ..++.++.+++..+.++..
T Consensus        78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~  157 (220)
T cd03245          78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN  157 (220)
T ss_pred             hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence            23333343322  2588899876421110                                0222333444444444555


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|+|+..||...+..+.+++..
T Consensus       158 ~p~llllDEPt~~LD~~~~~~l~~~l~~  185 (220)
T cd03245         158 DPPILLLDEPTSAMDMNSEERLKERLRQ  185 (220)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            5556666666666666667777777754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.2e-22  Score=172.24  Aligned_cols=146  Identities=17%  Similarity=0.131  Sum_probs=99.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A  150 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~  150 (229)
                      .++|+++||++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..   .
T Consensus         9 ~~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~   81 (265)
T PRK10575          9 DTTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK   81 (265)
T ss_pred             CceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence            35799999999998654    8999999999999999999999999999999999999   99997 888876422   1


Q ss_pred             HhhcCCCcccCc---chhhhHHHHHHccccccC-------------------------------CCCCCCCCCchhhhhh
Q 027060          151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYA-------------------------------PSFDHGVGDPVEDDIL  196 (229)
Q Consensus       151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~  196 (229)
                      ..+..+.+.+|.   ...+++.+|+.++.....                               ..++.++.+++..+.+
T Consensus        82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  161 (265)
T PRK10575         82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAML  161 (265)
T ss_pred             HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHH
Confidence            122334444443   233689999886421000                               0112233344444444


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..++++|++|+|+..||...++.+.+++..
T Consensus       162 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  192 (265)
T PRK10575        162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHR  192 (265)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            4455555555555555555567777776653

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.8e-22  Score=170.78  Aligned_cols=94  Identities=19%  Similarity=0.311  Sum_probs=72.2

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~  148 (229)
                      +++|+++|+++.|++..    +|+++||+|++||+++|+|+||||||||+++|+|+++   |     ++|. .++|.++.
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~   73 (250)
T PRK14262          1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY   73 (250)
T ss_pred             CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence            35799999999998654    7999999999999999999999999999999999987   5     7897 88887542


Q ss_pred             H-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          149 E-----AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       149 ~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      .     ...+..+.+.+|.+.  ..++.+|+.++
T Consensus        74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~  107 (250)
T PRK14262         74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG  107 (250)
T ss_pred             cchhhHHHhhhhEEEEecCCccCcccHHHHHHHH
Confidence            1     112233444444322  27888988764

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=3.4e-22  Score=163.72  Aligned_cols=133  Identities=18%  Similarity=0.226  Sum_probs=103.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----HHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-----KEA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-----~~~  150 (229)
                      ||+++||+|.|+.+.    +++++|++|++|.+++|+|||||||||||.+++.+++   .++|. .++|.++     ...
T Consensus         1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L   73 (252)
T COG4604           1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL   73 (252)
T ss_pred             CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence            589999999999886    8999999999999999999999999999999999999   99997 8999864     223


Q ss_pred             HhhcCCCcc-cCcchhhhHHHHHHccccccCCCCC-----------------CCCCCchhhhhhccCCccE-----EEec
Q 027060          151 HARRGAPWT-FNPLLLLNCLKNLRNQGSVYAPSFD-----------------HGVGDPVEDDILVGLQHKV-----VIVD  207 (229)
Q Consensus       151 ~~~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~rv-----Li~d  207 (229)
                      .....+..+ .....-+||.+-+.||...+....-                 ....++...+++.|+++|.     +..|
T Consensus        74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd  153 (252)
T COG4604          74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD  153 (252)
T ss_pred             HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence            333333222 2222238999999998765432110                 2345666677888887776     7779


Q ss_pred             CCeeeeccc
Q 027060          208 GNYLFLDGG  216 (229)
Q Consensus       208 ~~~LlLDEP  216 (229)
                      -+|++||||
T Consensus       154 TdyvlLDEP  162 (252)
T COG4604         154 TDYVLLDEP  162 (252)
T ss_pred             CcEEEecCc
Confidence            999999999

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.87  E-value=2.9e-22  Score=187.60  Aligned_cols=94  Identities=19%  Similarity=0.232  Sum_probs=75.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      ++|+++|+++.|++..    +|+|+||+|.+|+++||+||||||||||+|+|+|+++   |++|. .++|.++..    .
T Consensus         3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   75 (501)
T PRK10762          3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS   75 (501)
T ss_pred             ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            5799999999998754    8999999999999999999999999999999999999   99997 888865421    1


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~  176 (229)
                      ..+..+.+.+|.+   ..+|+.+|+.++.
T Consensus        76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  104 (501)
T PRK10762         76 SQEAGIGIIHQELNLIPQLTIAENIFLGR  104 (501)
T ss_pred             HHhCCEEEEEcchhccCCCcHHHHhhhcc
Confidence            1233455555543   3379999998753

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4e-22  Score=174.36  Aligned_cols=148  Identities=11%  Similarity=0.147  Sum_probs=97.7

Q ss_pred             eEEEeeeeEEcCccc-cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~-~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      .|+++||++.|++.. ....+|+|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..     
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK   78 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            489999999997421 11238999999999999999999999999999999999999   99997 888875421     


Q ss_pred             --HHhhcCCCcccCcc----hhhhHHHHHHccccccC----------------------------CCCCCCCCCchhhhh
Q 027060          150 --AHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA----------------------------PSFDHGVGDPVEDDI  195 (229)
Q Consensus       150 --~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~----------------------------~~~~~~~~~~~~~~l  195 (229)
                        ...+..+++.||.+    ...|+.+|+.++.....                            ..++.++.+++..+.
T Consensus        79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar  158 (286)
T PRK13646         79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS  158 (286)
T ss_pred             hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence              12233455555543    12589999986421100                            001122333444444


Q ss_pred             hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++..++++|++|+|+..||...+..+.+++..
T Consensus       159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~  190 (286)
T PRK13646        159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS  190 (286)
T ss_pred             HHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            44445555555555555555567777777653

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.8e-22  Score=172.14  Aligned_cols=95  Identities=18%  Similarity=0.208  Sum_probs=73.6

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCH
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDP  147 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~  147 (229)
                      ..++|+++||++.|++..    +|+|+||+|++|++++|+|+||||||||+++|+|+++   |     ++|. .++|+++
T Consensus        16 ~~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i   88 (267)
T PRK14235         16 TEIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDI   88 (267)
T ss_pred             CCceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEC
Confidence            345799999999998654    8999999999999999999999999999999999987   5     7897 8888754


Q ss_pred             HH-----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          148 KE-----AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       148 ~~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      ..     ...+..+.+.+|.+.+  .++.+|+.++
T Consensus        89 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~  123 (267)
T PRK14235         89 YDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG  123 (267)
T ss_pred             cccccchHHHhhceEEEecCCCCCCCcHHHHHHHH
Confidence            21     1223344444444321  4889998764

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.86  E-value=6.8e-22  Score=167.86  Aligned_cols=93  Identities=19%  Similarity=0.220  Sum_probs=71.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|++..  ..+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...+
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (237)
T cd03252           1 ITFEHVRFRYKPDG--PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR   75 (237)
T ss_pred             CEEEEEEEecCCCC--ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence            47899999997421  127899999999999999999999999999999999999   99997 888876532   1122


Q ss_pred             cCCCcccCcch--hhhHHHHHHcc
Q 027060          154 RGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       154 ~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      ..+.+.+|...  ..|+.+|+.+.
T Consensus        76 ~~i~~~~q~~~~~~~tv~~nl~~~   99 (237)
T cd03252          76 RQVGVVLQENVLFNRSIRDNIALA   99 (237)
T ss_pred             hcEEEEcCCchhccchHHHHhhcc
Confidence            33444444432  26899998764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.86  E-value=4e-22  Score=171.52  Aligned_cols=145  Identities=16%  Similarity=0.203  Sum_probs=97.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      ..|+++||++.|+++.    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..     
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~   76 (257)
T PRK10619          4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD   76 (257)
T ss_pred             ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence            3699999999998754    8999999999999999999999999999999999999   99997 888865421     


Q ss_pred             -----------HHhhcCCCcccCcc---hhhhHHHHHHcccc-ccC----------------------------CCCCCC
Q 027060          150 -----------AHARRGAPWTFNPL---LLLNCLKNLRNQGS-VYA----------------------------PSFDHG  186 (229)
Q Consensus       150 -----------~~~~~~~~~~~~~~---~~~tv~e~l~~~~~-~~~----------------------------~~~~~~  186 (229)
                                 ...+..+.+.+|.+   ..+++.+|+.++.. ...                            ..++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G  156 (257)
T PRK10619         77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGG  156 (257)
T ss_pred             cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence                       12233444444443   23689999865210 000                            011122


Q ss_pred             CCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       187 ~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus       157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  197 (257)
T PRK10619        157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ  197 (257)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            33444444444455555555555555555567777776653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.1e-22  Score=171.57  Aligned_cols=94  Identities=18%  Similarity=0.272  Sum_probs=72.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~  148 (229)
                      +++|+++|+++.|++..    +|+|+||+|.+||++||+|+||||||||+++|+|+++   |     ++|+ .++|+++.
T Consensus        10 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~   82 (258)
T PRK14268         10 QPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY   82 (258)
T ss_pred             ceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence            45799999999998654    8999999999999999999999999999999999987   5     7897 88887542


Q ss_pred             H-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          149 E-----AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       149 ~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      .     ...+..+.+.+|...  ..|+.+|+.+.
T Consensus        83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~  116 (258)
T PRK14268         83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG  116 (258)
T ss_pred             cccchHHHHhhhEEEEecCCccCcccHHHHHHHH
Confidence            1     122233444444322  27888988764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.86  E-value=2.1e-22  Score=177.31  Aligned_cols=136  Identities=19%  Similarity=0.250  Sum_probs=91.3

Q ss_pred             EEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HHHhhcCC-Cc
Q 027060           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EAHARRGA-PW  158 (229)
Q Consensus        85 ~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~~~~~~~-~~  158 (229)
                      |.|++..    +|+++||+|++||++||+||||||||||+|+|+|+++   |++|. .++|.++.    ..+..+++ ++
T Consensus         1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q   73 (302)
T TIGR01188         1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ   73 (302)
T ss_pred             CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence            4576544    8999999999999999999999999999999999999   99997 88887542    12223443 33


Q ss_pred             ccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEEecCCee
Q 027060          159 TFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  211 (229)
Q Consensus       159 ~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~L  211 (229)
                      .+..+..+|+.+|+.+....+.                           ..++.++.+++..+.++..++++|++|+|+.
T Consensus        74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  153 (302)
T TIGR01188        74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT  153 (302)
T ss_pred             CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            3333344799999876432211                           0122344444444455555555566666666


Q ss_pred             eecccCHHHHHHHHhh
Q 027060          212 FLDGGVWKDVSSMFDE  227 (229)
Q Consensus       212 lLDEP~~~~l~~~l~~  227 (229)
                      .||...++.+.+++..
T Consensus       154 gLD~~~~~~l~~~l~~  169 (302)
T TIGR01188       154 GLDPRTRRAIWDYIRA  169 (302)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            6665567777777654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=5.1e-22  Score=172.32  Aligned_cols=147  Identities=14%  Similarity=0.184  Sum_probs=101.5

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      ++|+++|+++.|++..  ..+|+++||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|.++..   ..
T Consensus         6 ~~l~~~nl~~~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   80 (271)
T PRK13632          6 VMIKVENVSFSYPNSE--NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE   80 (271)
T ss_pred             eEEEEEeEEEEcCCCC--ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence            4799999999996311  127999999999999999999999999999999999999   99997 888876431   12


Q ss_pred             hhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          152 ARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       152 ~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      .+..+.+.+|.+    ..+|+.+|+.++.....                           ..++.++.+++..+.++..+
T Consensus        81 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  160 (271)
T PRK13632         81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN  160 (271)
T ss_pred             HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            233455555543    22699999876421100                           01223344445555555556


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|+++..||....+.+.+++..
T Consensus       161 p~lllLDEP~~gLD~~~~~~l~~~l~~  187 (271)
T PRK13632        161 PEIIIFDESTSMLDPKGKREIKKIMVD  187 (271)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            666666666666666667777777653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=5.7e-22  Score=163.93  Aligned_cols=142  Identities=14%  Similarity=0.138  Sum_probs=93.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHH-hhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAH-ARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~-~~~  154 (229)
                      +|+++|+++.|++..    ++ ++||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.++.... ...
T Consensus         1 ~l~~~~l~~~~~~~~----l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~   72 (195)
T PRK13541          1 MLSLHQLQFNIEQKN----LF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC   72 (195)
T ss_pred             CeEEEEeeEEECCcE----EE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence            378999999997642    44 5999999999999999999999999999999999   99997 88887653321 122


Q ss_pred             CC-CcccCcchhhhHHHHHHccccccC----------------------CCCCCCCCCchhhhhhccCCccEEEecCCee
Q 027060          155 GA-PWTFNPLLLLNCLKNLRNQGSVYA----------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  211 (229)
Q Consensus       155 ~~-~~~~~~~~~~tv~e~l~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~L  211 (229)
                      ++ ++.+......|+.+|+.+....+.                      ..++.++.+++....++..+++++++|+++.
T Consensus        73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~  152 (195)
T PRK13541         73 TYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET  152 (195)
T ss_pred             EeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            22 332222334788888876432110                      0112233334444444444555555555555


Q ss_pred             eecccCHHHHHHHHh
Q 027060          212 FLDGGVWKDVSSMFD  226 (229)
Q Consensus       212 lLDEP~~~~l~~~l~  226 (229)
                      .||......+.+++.
T Consensus       153 ~LD~~~~~~l~~~l~  167 (195)
T PRK13541        153 NLSKENRDLLNNLIV  167 (195)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            555556777777764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.86  E-value=4.6e-22  Score=169.57  Aligned_cols=91  Identities=21%  Similarity=0.333  Sum_probs=71.4

Q ss_pred             EEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      |+++||++.|++ ..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus         1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (242)
T cd03295           1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL   73 (242)
T ss_pred             CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence            468999999986 43    7999999999999999999999999999999999999   99997 888875421   112


Q ss_pred             hcCCCcccCcc---hhhhHHHHHHcc
Q 027060          153 RRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      +..+.+.+|.+   ..+|+.+|+.++
T Consensus        74 ~~~i~~~~q~~~~~~~~tv~e~l~~~   99 (242)
T cd03295          74 RRKIGYVIQQIGLFPHMTVEENIALV   99 (242)
T ss_pred             hcceEEEccCccccCCCcHHHHHHHH
Confidence            23344444443   237899998764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.86  E-value=5.7e-22  Score=166.75  Aligned_cols=148  Identities=22%  Similarity=0.236  Sum_probs=99.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------  149 (229)
                      +|+++|+++.|++......+|+++||++.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..      
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL   77 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence            47899999999752111238999999999999999999999999999999999999   99997 888876532      


Q ss_pred             HHhhcCCCcccCcch---hhhHHHHHHccccccCC----------------------------CCCCCCCCchhhhhhcc
Q 027060          150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP----------------------------SFDHGVGDPVEDDILVG  198 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~----------------------------~~~~~~~~~~~~~l~~~  198 (229)
                      ...+.++.+.++...   ..++.+|+.+....+..                            .++.++.+++..+.++.
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~  157 (220)
T TIGR02982        78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV  157 (220)
T ss_pred             HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence            112334444454432   36888888764322110                            01123334444444445


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++++|+|+..||...+..+.+++..
T Consensus       158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~  186 (220)
T TIGR02982       158 HRPKLVLADEPTAALDSKSGRDVVELMQK  186 (220)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            55556666666666666667777776653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=5.3e-22  Score=170.07  Aligned_cols=94  Identities=18%  Similarity=0.252  Sum_probs=73.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~~  148 (229)
                      .++|+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |+     +|. .++|.++.
T Consensus         2 ~~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~   74 (251)
T PRK14249          2 DPKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIY   74 (251)
T ss_pred             CceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEcc
Confidence            45799999999998654    8999999999999999999999999999999999998   86     586 88887542


Q ss_pred             H-----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      .     ...+..+.+.+|.+.+  .++.+|+.+.
T Consensus        75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~  108 (251)
T PRK14249         75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG  108 (251)
T ss_pred             ccccChHHhhceEEEEecCCccCcCcHHHHHhhH
Confidence            1     1223344444444322  5889998764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.9e-22  Score=183.70  Aligned_cols=149  Identities=17%  Similarity=0.240  Sum_probs=97.5

Q ss_pred             CeEEEeeeeEEcCccccc--------------------cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccC
Q 027060           76 PVVEARCMDEVYDALAQR--------------------LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW  135 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~--------------------~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~  135 (229)
                      .+|+++||+|.|+....+                    ..+|+++||+|++||+++|+||||||||||+|+|+|+++   
T Consensus         3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---   79 (400)
T PRK10070          3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---   79 (400)
T ss_pred             cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---
Confidence            468888888888764311                    126899999999999999999999999999999999999   


Q ss_pred             CCCce-EecCCCHHH-----H--HhhcCCCcccCcc---hhhhHHHHHHccccccC------------------------
Q 027060          136 PQKAS-SFDSQDPKE-----A--HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA------------------------  180 (229)
Q Consensus       136 p~~G~-~~~g~~~~~-----~--~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~------------------------  180 (229)
                      |++|. .++|.++..     .  .++..+.+.+|..   +.+|+.+|+.++.....                        
T Consensus        80 p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~  159 (400)
T PRK10070         80 PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH  159 (400)
T ss_pred             CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence            99997 888875421     1  1123444555443   34799999987532110                        


Q ss_pred             ---CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          181 ---PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       181 ---~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                         ..++.++.+++..+.++..++++|++|+|+..||...+..+.+++..
T Consensus       160 ~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~  209 (400)
T PRK10070        160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVK  209 (400)
T ss_pred             cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence               01122333444444444444555555555555555567777776643

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.86  E-value=4.6e-22  Score=177.42  Aligned_cols=98  Identities=14%  Similarity=0.208  Sum_probs=76.2

Q ss_pred             CCeEEEeeeeEEcCccc---------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~---------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      +++|+++||++.|+...         ....+++|+||+|.+||++||+|+||||||||+++|+|+++   |++|. .++|
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G   82 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG   82 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence            46899999999996321         12458999999999999999999999999999999999999   99997 8888


Q ss_pred             CCHHH------HHhhcCCCcccCcc-----hhhhHHHHHHcc
Q 027060          145 QDPKE------AHARRGAPWTFNPL-----LLLNCLKNLRNQ  175 (229)
Q Consensus       145 ~~~~~------~~~~~~~~~~~~~~-----~~~tv~e~l~~~  175 (229)
                      +++..      ...+..+.+.||.+     +.+++.+|+.++
T Consensus        83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~  124 (331)
T PRK15079         83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP  124 (331)
T ss_pred             EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH
Confidence            76421      11233466666654     237889988653

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.86  E-value=3.7e-22  Score=165.79  Aligned_cols=139  Identities=21%  Similarity=0.218  Sum_probs=106.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCCCCce-EecCCCHHH----H
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      |+++|+++.|++..    +++++||+|.+||+++|+|+||||||||+++|+|+  ++   |++|. .++|+++..    .
T Consensus         1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~   73 (200)
T cd03217           1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE   73 (200)
T ss_pred             CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence            46899999998644    89999999999999999999999999999999999  47   89997 888875421    1


Q ss_pred             HhhcCCCcccCcch---hhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+..+.+.+|...   ..++.+++..    ....++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus        74 ~~~~~i~~v~q~~~~~~~~~~~~~l~~----~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~  149 (200)
T cd03217          74 RARLGIFLAFQYPPEIPGVKNADFLRY----VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINK  149 (200)
T ss_pred             HhhCcEEEeecChhhccCccHHHHHhh----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            22233444444432   3667776621    1124667778888888888888888888888888888888888887754

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=6.5e-22  Score=169.24  Aligned_cols=94  Identities=19%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~  148 (229)
                      |++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |     ++|. .++|.++.
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~   73 (249)
T PRK14253          1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY   73 (249)
T ss_pred             CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence            35799999999998654    8999999999999999999999999999999999987   6     4886 88886542


Q ss_pred             ----HHHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          149 ----EAHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       149 ----~~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                          ....+.++.+.+|.+.+  .++.+|+.+.
T Consensus        74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~  106 (249)
T PRK14253         74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYG  106 (249)
T ss_pred             cccchHHHHhheeEEecCCCcCcccHHHHHHhH
Confidence                11223344444444322  6888988764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.86  E-value=3.3e-22  Score=168.41  Aligned_cols=142  Identities=19%  Similarity=0.251  Sum_probs=95.8

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA  156 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~  156 (229)
                      |+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++.... ...+
T Consensus         1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~-~~~~   72 (223)
T TIGR03740         1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKD-LHKI   72 (223)
T ss_pred             CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccc-cccE
Confidence            47899999998654    8999999999999999999999999999999999999   99997 88887543211 1233


Q ss_pred             CcccCc---chhhhHHHHHHccccccC-----------------------CCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060          157 PWTFNP---LLLLNCLKNLRNQGSVYA-----------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNY  210 (229)
Q Consensus       157 ~~~~~~---~~~~tv~e~l~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~  210 (229)
                      .+.++.   +..+++.+|+.+......                       ..++.++.+++..+.++...++++++|+|+
T Consensus        73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~  152 (223)
T TIGR03740        73 GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT  152 (223)
T ss_pred             EEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence            333333   333789999875322111                       011223334444444444555556666666


Q ss_pred             eeecccCHHHHHHHHhh
Q 027060          211 LFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       211 LlLDEP~~~~l~~~l~~  227 (229)
                      ..||...++.+.+++..
T Consensus       153 ~~LD~~~~~~l~~~L~~  169 (223)
T TIGR03740       153 NGLDPIGIQELRELIRS  169 (223)
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            66665567777777653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.86  E-value=7.9e-22  Score=170.52  Aligned_cols=145  Identities=14%  Similarity=0.191  Sum_probs=100.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      .+|+++||++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|+++..   ..
T Consensus         6 ~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~   78 (265)
T PRK10253          6 ARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE   78 (265)
T ss_pred             cEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence            4799999999998754    8999999999999999999999999999999999999   99997 888876432   11


Q ss_pred             hhcCCCcccCcch---hhhHHHHHHccccccC-------------------------------CCCCCCCCCchhhhhhc
Q 027060          152 ARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-------------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      .+..+.+.+|...   ..++.+|+.++.....                               ..++.++.+++..+.++
T Consensus        79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral  158 (265)
T PRK10253         79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL  158 (265)
T ss_pred             HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH
Confidence            1223444444432   3688888876421000                               01122334444445555


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+++++++|+|+..||...+..+.+++..
T Consensus       159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~  188 (265)
T PRK10253        159 AQETAIMLLDEPTTWLDISHQIDLLELLSE  188 (265)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            556666666666666666667777777653

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.86  E-value=4.6e-22  Score=170.53  Aligned_cols=143  Identities=17%  Similarity=0.204  Sum_probs=96.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-------
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-------  149 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-------  149 (229)
                      |+++||++.|++..    +|+++||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|+++..       
T Consensus         1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   73 (252)
T TIGR03005         1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP   73 (252)
T ss_pred             CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence            47899999998654    8999999999999999999999999999999999999   99997 788865421       


Q ss_pred             ---------HHhhcCCCcccCcc---hhhhHHHHHHcccc----ccC------------------------CCCCCCCCC
Q 027060          150 ---------AHARRGAPWTFNPL---LLLNCLKNLRNQGS----VYA------------------------PSFDHGVGD  189 (229)
Q Consensus       150 ---------~~~~~~~~~~~~~~---~~~tv~e~l~~~~~----~~~------------------------~~~~~~~~~  189 (229)
                               ...+..+.+.+|..   ...++.+|+.++..    ...                        ..++.++.+
T Consensus        74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q  153 (252)
T TIGR03005        74 LVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQ  153 (252)
T ss_pred             ccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence                     11233444444443   23688898876311    000                        011223334


Q ss_pred             chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus       154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (252)
T TIGR03005       154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR  191 (252)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            44444444455555666666666665567777777654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.86  E-value=5.2e-22  Score=186.18  Aligned_cols=94  Identities=22%  Similarity=0.283  Sum_probs=75.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      .++|+++|+++.|++..    +|+|+||+|.+||++||+||||||||||+|+|+|+++   |++|. .++|.++..    
T Consensus         3 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~   75 (510)
T PRK09700          3 TPYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHK   75 (510)
T ss_pred             CceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHH
Confidence            35799999999998754    8999999999999999999999999999999999999   99997 888865421    


Q ss_pred             HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          150 AHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ...+.++.+.+|..   ..+++.+|+.++
T Consensus        76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  104 (510)
T PRK09700         76 LAAQLGIGIIYQELSVIDELTVLENLYIG  104 (510)
T ss_pred             HHHHCCeEEEeecccccCCCcHHHHhhhc
Confidence            12233455555543   337899999764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=9e-22  Score=170.65  Aligned_cols=98  Identities=19%  Similarity=0.255  Sum_probs=73.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHH---
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPK---  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~---  148 (229)
                      ..+|+++||++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++..  .|++|. .++|.++.   
T Consensus        11 ~~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~   86 (269)
T PRK14259         11 NIIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR   86 (269)
T ss_pred             CceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            34799999999998754    899999999999999999999999999999999997610  137897 88886542   


Q ss_pred             --HHHhhcCCCcccCcchh--hhHHHHHHccc
Q 027060          149 --EAHARRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       149 --~~~~~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                        ....+..+.+.+|...+  .|+.+|+.+..
T Consensus        87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~  118 (269)
T PRK14259         87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGA  118 (269)
T ss_pred             CCHHHHhhceEEEccCCccchhhHHHHHhhhh
Confidence              11222334444443321  58999998653

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=9.1e-22  Score=170.39  Aligned_cols=150  Identities=15%  Similarity=0.133  Sum_probs=98.8

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE-  149 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~-  149 (229)
                      +.++|+++|+++.|+++.    +|+++||+|.+||+++|+|+||||||||+++|+|+++..  .|++|. .++|.++.. 
T Consensus        17 ~~~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~   92 (267)
T PRK14237         17 EEIALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK   92 (267)
T ss_pred             CCeEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence            345799999999997654    899999999999999999999999999999999998500  037897 888876521 


Q ss_pred             ----HHhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCch
Q 027060          150 ----AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPV  191 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~  191 (229)
                          ...+.++.+.+|.+.  ..++.+|+.++.....                                ..++.++.+++
T Consensus        93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl  172 (267)
T PRK14237         93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL  172 (267)
T ss_pred             cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence                122334555555432  2689999976422110                                01112233334


Q ss_pred             hhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       192 ~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+.++..++++|++|+++..||...+..+.+++..
T Consensus       173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  208 (267)
T PRK14237        173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFE  208 (267)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            444444455555666666666665567777777654

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.86  E-value=1.1e-21  Score=164.74  Aligned_cols=145  Identities=17%  Similarity=0.139  Sum_probs=97.3

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|++..  ..+|+++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...+
T Consensus         3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (221)
T cd03244           3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR   77 (221)
T ss_pred             EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence            78999999997531  127999999999999999999999999999999999999   99997 888876432   1122


Q ss_pred             cCCCcccCcchh--hhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccCC
Q 027060          154 RGAPWTFNPLLL--LNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~  200 (229)
                      ..+.+.+|...+  .++.+|+.+.....                               ...++.++.+++..+.++..+
T Consensus        78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~  157 (221)
T cd03244          78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK  157 (221)
T ss_pred             hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence            334444443322  57888876431110                               011222334444444455555


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++++|+|+..||...+..+.+++..
T Consensus       158 p~llllDEP~~~LD~~~~~~l~~~l~~  184 (221)
T cd03244         158 SKILVLDEATASVDPETDALIQKTIRE  184 (221)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            666666666666666667777777754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.86  E-value=1.8e-21  Score=164.20  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=74.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A  150 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~  150 (229)
                      ..+|+++++++.|++.. ...+|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++..   .
T Consensus         9 ~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~   84 (226)
T cd03248           9 KGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHK   84 (226)
T ss_pred             CceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHH
Confidence            34799999999997531 1237999999999999999999999999999999999999   99997 888876532   1


Q ss_pred             HhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          151 HARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      ..+..+.+.+|...+  .++.+|+.++
T Consensus        85 ~~~~~i~~~~q~~~l~~~tv~~nl~~~  111 (226)
T cd03248          85 YLHSKVSLVGQEPVLFARSLQDNIAYG  111 (226)
T ss_pred             HHHhhEEEEecccHHHhhhHHHHhccc
Confidence            222334444444332  6888888754

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=9.7e-22  Score=169.28  Aligned_cols=95  Identities=15%  Similarity=0.211  Sum_probs=72.8

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCH
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDP  147 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~  147 (229)
                      .+++|+++|+++.|++..    +|+++||+|++||+++|+|+||||||||+++|+|+++   |     ++|. .++|+++
T Consensus         9 ~~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~p~~~~~G~i~~~g~~~   81 (259)
T PRK14274          9 KQEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ---MVPNVKLTGEMNYNGSNI   81 (259)
T ss_pred             CCceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---CCCCCCCceEEEECCEEc
Confidence            456899999999998654    8999999999999999999999999999999999986   4     5886 8888764


Q ss_pred             HH-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          148 KE-----AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       148 ~~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      ..     ...+..+.+.+|...  ..++.+|+.+.
T Consensus        82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~  116 (259)
T PRK14274         82 LKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG  116 (259)
T ss_pred             cccccCHHHHhhceEEEecCCcccccCHHHHHHhH
Confidence            21     122233444444322  14888888764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.86  E-value=1.1e-21  Score=166.44  Aligned_cols=143  Identities=18%  Similarity=0.182  Sum_probs=95.2

Q ss_pred             EEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      |+++|+++.|++ ..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus         1 l~~~~l~~~~~~~~~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~   73 (236)
T cd03253           1 IEFENVTFAYDPGRP----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL   73 (236)
T ss_pred             CEEEEEEEEeCCCCc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence            468999999963 33    7999999999999999999999999999999999999   99997 888876432   122


Q ss_pred             hcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.++...  ..|+.+|+.++.....                                ..++.++.+++..+.++.
T Consensus        74 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~  153 (236)
T cd03253          74 RRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL  153 (236)
T ss_pred             HhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence            233444444332  2689999876422100                                011223333444444444


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++|+|+..||...+..+.+++..
T Consensus       154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~  182 (236)
T cd03253         154 KNPPILLLDEATSALDTHTEREIQAALRD  182 (236)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            55555555555555555567777777653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=8e-22  Score=168.76  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=71.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH----
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~----  149 (229)
                      .|+++||++.|++..    +++|+||+|++||+++|+|+||||||||+++|+|+++..  .+++|. .++|+++..    
T Consensus         3 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14240          3 KISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID   78 (250)
T ss_pred             eEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            589999999998654    899999999999999999999999999999999987500  016897 888876431    


Q ss_pred             -HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 -AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 -~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                       ...+..+.+.+|.+.+  .++.+|+.++
T Consensus        79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~  107 (250)
T PRK14240         79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG  107 (250)
T ss_pred             hHHHhccEEEEecCCccCcccHHHHHHHH
Confidence             1123334444443221  6899999764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=6.9e-22  Score=185.23  Aligned_cols=95  Identities=21%  Similarity=0.289  Sum_probs=75.2

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCce-EecCCCHHH--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQDPKE--  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~g~~~~~--  149 (229)
                      +++|+++|+++.|++..    +|+|+||+|.+||+++|+||||||||||+|+|+|+++   |  ++|. .++|.++..  
T Consensus         3 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~   75 (506)
T PRK13549          3 EYLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN   75 (506)
T ss_pred             CceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence            35799999999998654    8999999999999999999999999999999999998   7  7897 788875421  


Q ss_pred             --HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060          150 --AHARRGAPWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       150 --~~~~~~~~~~~~~~---~~~tv~e~l~~~~  176 (229)
                        ...+..+.+.+|.+   ..+|+.+|+.++.
T Consensus        76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  107 (506)
T PRK13549         76 IRDTERAGIAIIHQELALVKELSVLENIFLGN  107 (506)
T ss_pred             HHHHHHCCeEEEEeccccCCCCcHHHHhhhcc
Confidence              11233455555443   3479999998754

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.1e-22  Score=171.62  Aligned_cols=148  Identities=15%  Similarity=0.164  Sum_probs=99.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      ++|+++||++.|++.. ...+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|+++..   ..
T Consensus         3 ~~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   78 (277)
T PRK13642          3 KILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWN   78 (277)
T ss_pred             ceEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHH
Confidence            4799999999997531 2237999999999999999999999999999999999999   99997 888875421   12


Q ss_pred             hhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          152 ARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       152 ~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      .+..+.+.+|.+    ...++.+|+.++.....                           ..++.++.+++..+.++..+
T Consensus        79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~  158 (277)
T PRK13642         79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR  158 (277)
T ss_pred             HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            233455555543    22689999976422110                           01122333444444444455


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|+|+..||...++.+.+++..
T Consensus       159 p~llllDEPt~~LD~~~~~~l~~~l~~  185 (277)
T PRK13642        159 PEIIILDESTSMLDPTGRQEIMRVIHE  185 (277)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            555555555555555567777777653

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.86  E-value=1.4e-21  Score=166.09  Aligned_cols=94  Identities=19%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|++.. ...+|+++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...+
T Consensus         1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   76 (238)
T cd03249           1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR   76 (238)
T ss_pred             CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence            46899999997521 1237899999999999999999999999999999999999   99997 888876432   1112


Q ss_pred             cCCCcccCcch--hhhHHHHHHcc
Q 027060          154 RGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       154 ~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      ..+.+.+|...  ..++.+|+.++
T Consensus        77 ~~i~~~~q~~~~~~~tv~e~l~~~  100 (238)
T cd03249          77 SQIGLVSQEPVLFDGTIAENIRYG  100 (238)
T ss_pred             hhEEEECCchhhhhhhHHHHhhcc
Confidence            23444444432  25888998764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.1e-21  Score=168.10  Aligned_cols=96  Identities=18%  Similarity=0.265  Sum_probs=71.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCce-EecCCCHHH---
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQDPKE---  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~g~~~~~---  149 (229)
                      ++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++.  ..|++|. .++|+++..   
T Consensus         3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~   78 (251)
T PRK14251          3 NIISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM   78 (251)
T ss_pred             ceEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence            4799999999998654    89999999999999999999999999999999999851  0126897 888875421   


Q ss_pred             --HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 --AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                        ...+.++.+.+|...+  .++.+|+.++
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~  108 (251)
T PRK14251         79 DLVELRKEVGMVFQQPTPFPFSVYDNVAYG  108 (251)
T ss_pred             hHHHhhccEEEEecCCccCCCcHHHHHHHH
Confidence              1123334444443322  6888888754

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=8.8e-22  Score=168.89  Aligned_cols=97  Identities=16%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC---CCce-EecCCCHHH-
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQDPKE-  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p---~~G~-~~~g~~~~~-  149 (229)
                      .++|+++|+++.|++..    +|+|+||+|.+||+++|+|+||||||||+++|+|++.. .|   ++|. .++|+++.. 
T Consensus         4 ~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~   78 (253)
T PRK14261          4 EIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGENIMDS   78 (253)
T ss_pred             cceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEEcccc
Confidence            45899999999998754    89999999999999999999999999999999998750 02   4796 888876432 


Q ss_pred             ----HHhhcCCCcccCcchh--hhHHHHHHccc
Q 027060          150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                          ...+.++.+.+|...+  .++.+|+.+..
T Consensus        79 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~  111 (253)
T PRK14261         79 GADVVALRRKIGMVFQRPNPFPKSIYENVAYGP  111 (253)
T ss_pred             ccchhhhhceEEEEecCCccCcccHHHHHHhhH
Confidence                1223344444444322  58999988653

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1e-21  Score=168.14  Aligned_cols=145  Identities=17%  Similarity=0.224  Sum_probs=96.2

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCC---CCce-EecCCCHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKAS-SFDSQDPKE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p---~~G~-~~~g~~~~~  149 (229)
                      ++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+.  .   |   ++|. .++|+++..
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~   76 (252)
T PRK14239          4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS   76 (252)
T ss_pred             ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence            4799999999998654    899999999999999999999999999999999984  4   5   4896 888875421


Q ss_pred             -----HHhhcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCc
Q 027060          150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDP  190 (229)
Q Consensus       150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~  190 (229)
                           ...+..+.+.+|...+  .|+.+|+.++.....                                ..++.++.++
T Consensus        77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  156 (252)
T PRK14239         77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR  156 (252)
T ss_pred             cccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence                 1122334444443322  689999875421100                                0111223334


Q ss_pred             hhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       191 ~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..+.++..+++++++|+|+..||...+..+.+++..
T Consensus       157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14239        157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG  193 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence            4444444455555666666666666567788777754

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.86  E-value=7.3e-22  Score=164.86  Aligned_cols=141  Identities=19%  Similarity=0.188  Sum_probs=93.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      |+++|+++.|++..    .  ++||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|.++... ..+..
T Consensus         1 i~~~~l~~~~~~~~----~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~   71 (211)
T cd03298           1 VRLDKIRFSYGEQP----M--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP   71 (211)
T ss_pred             CEEEeEEEEeCCEe----c--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence            47899999997632    3  9999999999999999999999999999999999   99997 8888754221 11223


Q ss_pred             CCcccCcc---hhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCccEEE
Q 027060          156 APWTFNPL---LLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       156 ~~~~~~~~---~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      +.+.+|..   ..+|+.+|+.+.......                           .++.++.+++..+.++..++++++
T Consensus        72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll  151 (211)
T cd03298          72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL  151 (211)
T ss_pred             EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            43444333   337899999764321100                           112233344444444444555555


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...+..+.+++..
T Consensus       152 lDEP~~~LD~~~~~~l~~~l~~  173 (211)
T cd03298         152 LDEPFAALDPALRAEMLDLVLD  173 (211)
T ss_pred             EcCCcccCCHHHHHHHHHHHHH
Confidence            5555555555567777777653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.1e-21  Score=168.22  Aligned_cols=97  Identities=15%  Similarity=0.205  Sum_probs=72.3

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc-c-CCCCce-EecCCCHHH--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~-~-~p~~G~-~~~g~~~~~--  149 (229)
                      +..|+++|+++.|++..    +|+|+||+|++||+++|+|+||||||||+++|+|+++. + .|++|. .++|+++..  
T Consensus         2 ~~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~   77 (252)
T PRK14256          2 NNKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG   77 (252)
T ss_pred             CcEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence            45799999999998654    89999999999999999999999999999999999740 0 125797 888876421  


Q ss_pred             ---HHhhcCCCcccCc---chhhhHHHHHHcc
Q 027060          150 ---AHARRGAPWTFNP---LLLLNCLKNLRNQ  175 (229)
Q Consensus       150 ---~~~~~~~~~~~~~---~~~~tv~e~l~~~  175 (229)
                         ...+..+.+.+|.   +..+|+.+|+.++
T Consensus        78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~  109 (252)
T PRK14256         78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAG  109 (252)
T ss_pred             CChHHhhccEEEEecCCCCCCcCcHHHHHHhH
Confidence               1223334444443   2337889988753

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.4e-21  Score=168.53  Aligned_cols=97  Identities=16%  Similarity=0.224  Sum_probs=72.5

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCce-EecCCCHHH--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~g~~~~~--  149 (229)
                      ..+|+++|+++.|++..    +|+|+||+|++||+++|+|+||||||||+++|+|+++.  ..|++|. .++|.++..  
T Consensus        11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~   86 (260)
T PRK10744         11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK   86 (260)
T ss_pred             CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence            44799999999998653    89999999999999999999999999999999999851  1137897 888865421  


Q ss_pred             ---HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          150 ---AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       150 ---~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                         ...+..+.+.+|...  ..++.+|+.++
T Consensus        87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~  117 (260)
T PRK10744         87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFG  117 (260)
T ss_pred             cchHHHhcceEEEecCCccCcCcHHHHHhhh
Confidence               122333444444422  26888988764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.9e-22  Score=171.41  Aligned_cols=96  Identities=16%  Similarity=0.123  Sum_probs=72.0

Q ss_pred             eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      .|+++||++.|++... ...+|+++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|+++..     
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK   78 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence            3889999999975210 0127999999999999999999999999999999999999   99997 888875421     


Q ss_pred             --HHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060          150 --AHARRGAPWTFNPL----LLLNCLKNLRNQ  175 (229)
Q Consensus       150 --~~~~~~~~~~~~~~----~~~tv~e~l~~~  175 (229)
                        ...+..+.+.+|..    ...|+.+|+.++
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~  110 (280)
T PRK13649         79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFG  110 (280)
T ss_pred             CHHHHHhheEEEeeChhhhhccccHHHHHHHH
Confidence              11223344444442    125888888754

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.85  E-value=1.1e-21  Score=168.74  Aligned_cols=143  Identities=15%  Similarity=0.155  Sum_probs=96.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...+
T Consensus         2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (256)
T TIGR03873         2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA   74 (256)
T ss_pred             ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence            68899999998754    8999999999999999999999999999999999999   99997 888875422   1112


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccccc----cC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQGSV----YA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~~~----~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+.+.+|.+   ...++.+|+.++...    ..                           ..++.++.+++..+.++..
T Consensus        75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~  154 (256)
T TIGR03873        75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ  154 (256)
T ss_pred             hheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            2333333332   337899998764210    00                           0011233334444444444


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++++++|+|+..||...+..+.+++..
T Consensus       155 ~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (256)
T TIGR03873       155 EPKLLLLDEPTNHLDVRAQLETLALVRE  182 (256)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            5555666666666665567777777654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.4e-21  Score=174.13  Aligned_cols=150  Identities=18%  Similarity=0.184  Sum_probs=103.6

Q ss_pred             CCeEEEeeeeEEcCccc------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      +++|+++||++.|+...      ..+.+|+||||+|.+||++||+|+||||||||+++|+|+++   |++|. .++|.++
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l   79 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL   79 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence            35799999999996321      12358999999999999999999999999999999999999   99997 8888754


Q ss_pred             HH------HHhhcCCCcccCcch-----hhhHHHHHHcccccc-----------------------------CCCCCCCC
Q 027060          148 KE------AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVY-----------------------------APSFDHGV  187 (229)
Q Consensus       148 ~~------~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~-----------------------------~~~~~~~~  187 (229)
                      ..      ...+..+.+.||.+.     .+++.+++......+                             ...++.++
T Consensus        80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq  159 (327)
T PRK11308         80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ  159 (327)
T ss_pred             CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence            21      122334566666542     256666654321110                             11233455


Q ss_pred             CCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       188 ~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++..+.++..++++||+|+++..||...+.++.+++..
T Consensus       160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~  199 (327)
T PRK11308        160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMD  199 (327)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            5566666666666666666666666666678888887754

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.85  E-value=4.9e-22  Score=162.45  Aligned_cols=136  Identities=19%  Similarity=0.225  Sum_probs=101.5

Q ss_pred             EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhhc
Q 027060           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHARR  154 (229)
Q Consensus        79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~~  154 (229)
                      +++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...+.
T Consensus         1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~   73 (180)
T cd03214           1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELAR   73 (180)
T ss_pred             CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHH
Confidence            4789999998643    8999999999999999999999999999999999999   99997 888865421   11122


Q ss_pred             CCCcccCcchhhhHHHHHHcccc--ccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          155 GAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       155 ~~~~~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.+.+|      +++.+.+...  .....++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus        74 ~i~~~~q------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~  142 (180)
T cd03214          74 KIAYVPQ------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR  142 (180)
T ss_pred             HHhHHHH------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            3344444      2222222111  11234667778888888888888899999999999998888888887764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-21  Score=169.85  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=97.4

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE-  149 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~-  149 (229)
                      ..++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|++...  .|++|. .++|+++.. 
T Consensus        17 ~~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~   92 (274)
T PRK14265         17 DHSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS   92 (274)
T ss_pred             CCceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence            345899999999998754    899999999999999999999999999999999998510  015786 888876421 


Q ss_pred             ----HHhhcCCCcccCcchh--hhHHHHHHccccccC------------------------------CCCCCCCCCchhh
Q 027060          150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA------------------------------PSFDHGVGDPVED  193 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~------------------------------~~~~~~~~~~~~~  193 (229)
                          ...+.++.+.+|...+  .++.+|+.++.....                              ..++.++.+++..
T Consensus        93 ~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L  172 (274)
T PRK14265         93 QINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI  172 (274)
T ss_pred             cchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence                1223344444444322  478888876421100                              0112233344444


Q ss_pred             hhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       194 ~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +.++..++++|++|+|+..||...+..+.+++..
T Consensus       173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  206 (274)
T PRK14265        173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE  206 (274)
T ss_pred             HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            4444455555555555555555567777777654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-21  Score=167.29  Aligned_cols=93  Identities=19%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH---hcccCC--CCce-EecCCCHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKAS-SFDSQDPKE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl---l~~~~p--~~G~-~~~g~~~~~  149 (229)
                      ++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+   ++   |  ++|. .++|.++..
T Consensus         2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~   74 (250)
T PRK14245          2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD   74 (250)
T ss_pred             cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence            5799999999998754    89999999999999999999999999999999997   34   4  4897 888876532


Q ss_pred             -----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                           ...+.++.+.+|...+  .++.+|+.++
T Consensus        75 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~  107 (250)
T PRK14245         75 KGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG  107 (250)
T ss_pred             ccccHHHHhhheEEEecCCccCcccHHHHHHHH
Confidence                 1223334444443221  5888888754

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.85  E-value=1.8e-21  Score=163.97  Aligned_cols=95  Identities=22%  Similarity=0.294  Sum_probs=68.9

Q ss_pred             eEEEeeeeEEcCccc---cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec--CC--CHH
Q 027060           77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--SQ--DPK  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~---~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~--g~--~~~  148 (229)
                      +|+++|+++.|+...   ....+|+|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++  |.  ++.
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~   77 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA   77 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence            488999999996410   01237999999999999999999999999999999999999   99997 776  42  321


Q ss_pred             H----H---HhhcCCCcccCcc---hhhhHHHHHHc
Q 027060          149 E----A---HARRGAPWTFNPL---LLLNCLKNLRN  174 (229)
Q Consensus       149 ~----~---~~~~~~~~~~~~~---~~~tv~e~l~~  174 (229)
                      .    .   .++..+.+.+|..   ..+++.+|+.+
T Consensus        78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~  113 (224)
T TIGR02324        78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAE  113 (224)
T ss_pred             hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHH
Confidence            1    0   1123344444433   33678888764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.2e-21  Score=170.98  Aligned_cols=147  Identities=15%  Similarity=0.159  Sum_probs=98.9

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC---ce-EecCCCHHH--
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQDPKE--  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~---G~-~~~g~~~~~--  149 (229)
                      .+|+++|+++.|++..  ..+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++   |. .++|.++..  
T Consensus         4 ~~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~   78 (282)
T PRK13640          4 NIVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKT   78 (282)
T ss_pred             ceEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCC
Confidence            4799999999997521  127999999999999999999999999999999999998   887   76 888876421  


Q ss_pred             -HHhhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhc
Q 027060          150 -AHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       150 -~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~  197 (229)
                       ...+..+++.+|.+    ...|+.+|+.+......                           ..++.++.+++..+.++
T Consensus        79 ~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral  158 (282)
T PRK13640         79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL  158 (282)
T ss_pred             HHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence             11223344555543    23689999976422110                           01122334444444445


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++|+|+..||...+..+.+++..
T Consensus       159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~  188 (282)
T PRK13640        159 AVEPKIIILDESTSMLDPAGKEQILKLIRK  188 (282)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            555555666666666666567777777653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.85  E-value=8e-22  Score=167.76  Aligned_cols=90  Identities=23%  Similarity=0.279  Sum_probs=68.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-EecCCCHHH----H
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      |+++|+++.|++..    +|+|+||+|++||+++|+||||||||||+++|+|++  +   |++|. .++|.++..    .
T Consensus         1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR01978         1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE   73 (243)
T ss_pred             CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence            47899999998654    899999999999999999999999999999999994  7   89997 888875421    1


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHc
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRN  174 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~  174 (229)
                      ..+.++.+.+|.+   ..+++.+++.+
T Consensus        74 ~~~~~i~~v~q~~~~~~~~t~~~~~~~  100 (243)
T TIGR01978        74 RARAGLFLAFQYPEEIPGVSNLEFLRS  100 (243)
T ss_pred             hhccceEeeeccccccCCcCHHHHHHH
Confidence            1233344444433   33667777654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.1e-21  Score=170.72  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=72.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~  150 (229)
                      +|+++||++.|++..   .+++++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++.     ..
T Consensus         1 ~l~~~~l~~~~~~~~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (275)
T PRK13639          1 ILETRDLKYSYPDGT---EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL   74 (275)
T ss_pred             CEEEEEEEEEeCCCC---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence            488999999996421   27999999999999999999999999999999999999   99997 88887642     11


Q ss_pred             HhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060          151 HARRGAPWTFNPL----LLLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~----~~~tv~e~l~~~  175 (229)
                      ..+..+.+.+|.+    ...++.+|+.++
T Consensus        75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~  103 (275)
T PRK13639         75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFG  103 (275)
T ss_pred             HHHhheEEEeeChhhhhccccHHHHHHHH
Confidence            1233445555543    226899999764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.85  E-value=2.1e-21  Score=167.11  Aligned_cols=145  Identities=15%  Similarity=0.235  Sum_probs=95.8

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC-----HH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD-----PK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~-----~~  148 (229)
                      .++|+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.+     +.
T Consensus         4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~   76 (258)
T PRK11701          4 QPLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLY   76 (258)
T ss_pred             CceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCccccccccc
Confidence            34799999999998654    8999999999999999999999999999999999999   99997 888876     32


Q ss_pred             H----H-H--hhcCCCcccCcch-----hhhHHHHHHcccc----------------------c-----c--CCCCCCCC
Q 027060          149 E----A-H--ARRGAPWTFNPLL-----LLNCLKNLRNQGS----------------------V-----Y--APSFDHGV  187 (229)
Q Consensus       149 ~----~-~--~~~~~~~~~~~~~-----~~tv~e~l~~~~~----------------------~-----~--~~~~~~~~  187 (229)
                      .    . .  .+.++.+.+|...     .+++.+|+.+...                      +     .  ...++.++
T Consensus        77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq  156 (258)
T PRK11701         77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM  156 (258)
T ss_pred             cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence            1    1 1  1233444444431     1455555532100                      0     0  01122334


Q ss_pred             CCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       188 ~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      .+++..+.++..++++|++|+|+..||......+.+++.
T Consensus       157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  195 (258)
T PRK11701        157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR  195 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            444444455555566666666666666666777777654

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.4e-21  Score=173.68  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             CCCCeEEEeeeeEEcCccc-cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH--
Q 027060           73 REIPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK--  148 (229)
Q Consensus        73 ~~~~~i~~~~ls~~y~~~~-~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~--  148 (229)
                      .+.++|+++|+++.|++.. ....+|+|+||+|++|+++||+|+||||||||+++|+|+++   |++|. .++|.++.  
T Consensus        17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~   93 (320)
T PRK13631         17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDK   93 (320)
T ss_pred             CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEcccc
Confidence            3456899999999997531 11238999999999999999999999999999999999999   99997 88875431  


Q ss_pred             -----------------HHHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060          149 -----------------EAHARRGAPWTFNPL----LLLNCLKNLRNQ  175 (229)
Q Consensus       149 -----------------~~~~~~~~~~~~~~~----~~~tv~e~l~~~  175 (229)
                                       ....+..+.+.+|.+    ...|+.+|+.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~  141 (320)
T PRK13631         94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG  141 (320)
T ss_pred             cccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhh
Confidence                             112233445555543    125899999775

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.85  E-value=9.5e-22  Score=170.26  Aligned_cols=149  Identities=17%  Similarity=0.171  Sum_probs=95.8

Q ss_pred             CeEEEeeeeEEcCccc-----cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH
Q 027060           76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~-----~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~  149 (229)
                      ++|+++||+++|+...     ....+|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++..
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~   79 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF   79 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence            4799999999996321     01238999999999999999999999999999999999999   99997 888865421


Q ss_pred             ---HHhhcCCCcccCcc-----hhhhHHHHHHcccccc-----------------------------CCCCCCCCCCchh
Q 027060          150 ---AHARRGAPWTFNPL-----LLLNCLKNLRNQGSVY-----------------------------APSFDHGVGDPVE  192 (229)
Q Consensus       150 ---~~~~~~~~~~~~~~-----~~~tv~e~l~~~~~~~-----------------------------~~~~~~~~~~~~~  192 (229)
                         ...+..+.+.+|..     ..+++.+++.+.....                             ...++.++.+++.
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~  159 (267)
T PRK15112         80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG  159 (267)
T ss_pred             CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence               11122344444432     1245666654321110                             0112233444444


Q ss_pred             hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.++..++++|++|+|+..||...+..+.+++..
T Consensus       160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  194 (267)
T PRK15112        160 LARALILRPKVIIADEALASLDMSMRSQLINLMLE  194 (267)
T ss_pred             HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            44445555556666666666666567777776654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.2e-21  Score=167.81  Aligned_cols=93  Identities=19%  Similarity=0.264  Sum_probs=72.0

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDPKE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~~~  149 (229)
                      .+|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |+     +|. .++|.++..
T Consensus         3 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~   75 (252)
T PRK14272          3 LLLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYG   75 (252)
T ss_pred             EEEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEccc
Confidence            3699999999998654    8999999999999999999999999999999999987   64     786 888865421


Q ss_pred             -----HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          150 -----AHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       150 -----~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                           ...+.++.+.+|..   ...|+.+|+.++
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~  109 (252)
T PRK14272         76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAG  109 (252)
T ss_pred             CccCHHHhhceeEEEeccCccCcCCCHHHHHHHH
Confidence                 12233444444443   236888988753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.85  E-value=7e-22  Score=167.54  Aligned_cols=143  Identities=18%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      |+++|+++.|++..    +++++||+|.+|++++|+|+||||||||+++|+|+++   |..|. .++|+++... ..+..
T Consensus         1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03300           1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP   73 (232)
T ss_pred             CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence            46899999998754    8999999999999999999999999999999999999   99997 8888754321 11223


Q ss_pred             CCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          156 APWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       156 ~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      +.+.++...   .+++.+|+.+......                           ..++.++.+++..+.++..++++++
T Consensus        74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll  153 (232)
T cd03300          74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL  153 (232)
T ss_pred             eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            444444332   3688888875321110                           1122344555555566666777777


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...++.+.+++..
T Consensus       154 lDEP~~gLD~~~~~~l~~~l~~  175 (232)
T cd03300         154 LDEPLGALDLKLRKDMQLELKR  175 (232)
T ss_pred             EcCCcccCCHHHHHHHHHHHHH
Confidence            7777777777788888887754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.4e-21  Score=165.59  Aligned_cols=142  Identities=19%  Similarity=0.257  Sum_probs=97.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~  154 (229)
                      +|+++||++.|++.      ..++||+|.+|+++||+|+||||||||+++|+|+++   |++|. .++|+++... ..+.
T Consensus         1 ~l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   71 (232)
T PRK10771          1 MLKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR   71 (232)
T ss_pred             CeEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence            48899999999753      238999999999999999999999999999999999   99997 8888764321 1123


Q ss_pred             CCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEE
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVV  204 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvL  204 (229)
                      .+.+.+|..   ..+++.+|+.++.....                           ..++.++.+++..+.++..+++++
T Consensus        72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  151 (232)
T PRK10771         72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL  151 (232)
T ss_pred             cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            344444433   33689999976421100                           012233444444455555566666


Q ss_pred             EecCCeeeecccCHHHHHHHHhh
Q 027060          205 IVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       205 i~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++|+|+..||...++.+.+++..
T Consensus       152 lLDEP~~gLD~~~~~~~~~~l~~  174 (232)
T PRK10771        152 LLDEPFSALDPALRQEMLTLVSQ  174 (232)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHH
Confidence            66666666666677777777654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.2e-21  Score=183.31  Aligned_cols=93  Identities=20%  Similarity=0.304  Sum_probs=75.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~  150 (229)
                      ++|+++|+++.|++..    +|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|+++.    ..
T Consensus         3 ~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   75 (501)
T PRK11288          3 PYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA   75 (501)
T ss_pred             ceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence            5799999999998754    8999999999999999999999999999999999999   99997 78886542    11


Q ss_pred             HhhcCCCcccCcch---hhhHHHHHHcc
Q 027060          151 HARRGAPWTFNPLL---LLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~~---~~tv~e~l~~~  175 (229)
                      ..+..+.+.+|.+.   .+|+.+|+.++
T Consensus        76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~  103 (501)
T PRK11288         76 ALAAGVAIIYQELHLVPEMTVAENLYLG  103 (501)
T ss_pred             HHhCCEEEEEechhccCCCCHHHHHHhc
Confidence            22344555555432   37999999875

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.85  E-value=9.1e-22  Score=167.46  Aligned_cols=143  Identities=20%  Similarity=0.295  Sum_probs=101.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      |+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++... ..+..
T Consensus         1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~   73 (237)
T TIGR00968         1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK   73 (237)
T ss_pred             CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence            47899999998754    8999999999999999999999999999999999999   99997 8888764321 11233


Q ss_pred             CCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          156 APWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       156 ~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      +.+.++.+   ...++.+|+.+......                           ..++.++.+++..+.++..++++++
T Consensus        74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll  153 (237)
T TIGR00968        74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL  153 (237)
T ss_pred             EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            44444433   23688888875432110                           0122344455555555566667777


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...++.+.+++.+
T Consensus       154 lDEP~~~LD~~~~~~~~~~l~~  175 (237)
T TIGR00968       154 LDEPFGALDAKVRKELRSWLRK  175 (237)
T ss_pred             EcCCcccCCHHHHHHHHHHHHH
Confidence            7777777777778888877764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.6e-21  Score=170.71  Aligned_cols=96  Identities=11%  Similarity=0.072  Sum_probs=72.7

Q ss_pred             eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------
Q 027060           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------  148 (229)
                      .|+++|+++.|++... ...+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++.      
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   82 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKKI   82 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccccccc
Confidence            5899999999976320 1237999999999999999999999999999999999999   99997 78886531      


Q ss_pred             --HHHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060          149 --EAHARRGAPWTFNPL----LLLNCLKNLRNQ  175 (229)
Q Consensus       149 --~~~~~~~~~~~~~~~----~~~tv~e~l~~~  175 (229)
                        ....+..+.+.+|.+    ...++.+|+.++
T Consensus        83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~  115 (289)
T PRK13645         83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG  115 (289)
T ss_pred             ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence              112233444555442    125889988764

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.85  E-value=2e-21  Score=167.03  Aligned_cols=137  Identities=18%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR  153 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~  153 (229)
                      .++|+++||++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .+++..       
T Consensus         2 ~~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~~-------   67 (251)
T PRK09544          2 TSLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGKL-------   67 (251)
T ss_pred             CcEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCcc-------
Confidence            35799999999998654    8999999999999999999999999999999999999   99997 666521       


Q ss_pred             cCCCcccCcc---hh--hhHHHHHHcccc------------------c--cCCCCCCCCCCchhhhhhccCCccEEEecC
Q 027060          154 RGAPWTFNPL---LL--LNCLKNLRNQGS------------------V--YAPSFDHGVGDPVEDDILVGLQHKVVIVDG  208 (229)
Q Consensus       154 ~~~~~~~~~~---~~--~tv~e~l~~~~~------------------~--~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~  208 (229)
                       .+.+.+|..   ..  .++.+++.+...                  .  ....++.++.+++..+.++..+++++++|+
T Consensus        68 -~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE  146 (251)
T PRK09544         68 -RIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE  146 (251)
T ss_pred             -CEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence             122222221   11  244454432110                  0  011233455555555555666666677777


Q ss_pred             CeeeecccCHHHHHHHHh
Q 027060          209 NYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       209 ~~LlLDEP~~~~l~~~l~  226 (229)
                      |+..||...+..+.+++.
T Consensus       147 Pt~~LD~~~~~~l~~~L~  164 (251)
T PRK09544        147 PTQGVDVNGQVALYDLID  164 (251)
T ss_pred             CCcCCCHHHHHHHHHHHH
Confidence            777777667777777664

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.85  E-value=1.6e-21  Score=181.96  Aligned_cols=143  Identities=9%  Similarity=0.003  Sum_probs=101.0

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~  149 (229)
                      .+|+++|+++.|++..    +|+++||+|.+|++++|+||||||||||+|+|+|+++   |++|. .++|.++.     .
T Consensus         2 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~   74 (490)
T PRK10938          2 SSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ   74 (490)
T ss_pred             ceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence            3799999999998654    8999999999999999999999999999999999999   99997 77776431     1


Q ss_pred             HHhhcCCCcccCcch-----------hhhHHHHHHcccc-------------------ccCCCCCCCCCCchhhhhhccC
Q 027060          150 AHARRGAPWTFNPLL-----------LLNCLKNLRNQGS-------------------VYAPSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~-----------~~tv~e~l~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~  199 (229)
                      .....+  +.+|.+.           .+++.+++.+...                   .....++.++.+++..+.++..
T Consensus        75 ~~~~i~--~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~  152 (490)
T PRK10938         75 LQKLVS--DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS  152 (490)
T ss_pred             HHHHhc--eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence            122233  2232211           2466665532100                   0112344566666666666767


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|||+..||...++.+.+++..
T Consensus       153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~  180 (490)
T PRK10938        153 EPDLLILDEPFDGLDVASRQQLAELLAS  180 (490)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            7777777777777777778888887764

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.85  E-value=1.8e-21  Score=168.69  Aligned_cols=150  Identities=19%  Similarity=0.200  Sum_probs=97.7

Q ss_pred             CCeEEEeeeeEEcCcc-----ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~-----~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~  148 (229)
                      |++|+++||++.|++.     .....+|+|+||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++.
T Consensus         1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~   77 (268)
T PRK10419          1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA   77 (268)
T ss_pred             CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence            4579999999999730     001137999999999999999999999999999999999999   99997 88887542


Q ss_pred             H------HHhhcCCCcccCcc-----hhhhHHHHHHcccc----------------------c-------cCCCCCCCCC
Q 027060          149 E------AHARRGAPWTFNPL-----LLLNCLKNLRNQGS----------------------V-------YAPSFDHGVG  188 (229)
Q Consensus       149 ~------~~~~~~~~~~~~~~-----~~~tv~e~l~~~~~----------------------~-------~~~~~~~~~~  188 (229)
                      .      ...+..+.+.+|..     ...++.+++.+...                      +       ....++.++.
T Consensus        78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~  157 (268)
T PRK10419         78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL  157 (268)
T ss_pred             ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence            1      11233444444443     12566666542110                      0       0011233444


Q ss_pred             CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++..+.++..++++|++|+|+..||...+..+.+++..
T Consensus       158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  196 (268)
T PRK10419        158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK  196 (268)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            454555555555666666666666666667777777653

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.6e-21  Score=173.68  Aligned_cols=153  Identities=16%  Similarity=0.216  Sum_probs=97.2

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCce-EecCCCHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQDPK----  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~g~~~~----  148 (229)
                      |.+|+++||++.|+.......+|+||||+|.+||++||+|+||||||||+++|+|+++.. .+++|. .++|+++.    
T Consensus         1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~   80 (326)
T PRK11022          1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE   80 (326)
T ss_pred             CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence            357999999999976422244899999999999999999999999999999999998610 127886 88887642    


Q ss_pred             -HHH--hhcCCCcccCcc-----hhhhHHHHHHccccc-------------------------------cCCCCCCCCCC
Q 027060          149 -EAH--ARRGAPWTFNPL-----LLLNCLKNLRNQGSV-------------------------------YAPSFDHGVGD  189 (229)
Q Consensus       149 -~~~--~~~~~~~~~~~~-----~~~tv~e~l~~~~~~-------------------------------~~~~~~~~~~~  189 (229)
                       ...  ++..+.+.||.+     +.+++.+++......                               +...++.++.+
T Consensus        81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q  160 (326)
T PRK11022         81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ  160 (326)
T ss_pred             HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence             111  112355555553     224554443321110                               00122334445


Q ss_pred             chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++..+.++..++++|++|+++..||...+.++.+++..
T Consensus       161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~  198 (326)
T PRK11022        161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE  198 (326)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            55555555555555555555555555567777776654

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.85  E-value=2.8e-21  Score=186.46  Aligned_cols=146  Identities=17%  Similarity=0.155  Sum_probs=114.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      -|+++||+++|+... + .+|+|+|++|++||++||+|+||||||||+|+|.|++.   |++|. .++|.++..   ...
T Consensus       471 ~I~~~nvsf~y~~~~-~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l  545 (709)
T COG2274         471 EIEFENVSFRYGPDD-P-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL  545 (709)
T ss_pred             eEEEEEEEEEeCCCC-c-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence            599999999998763 2 48999999999999999999999999999999999999   99997 999997543   233


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                      |+.++++.|+..+  -|+.||+.++.....                                ...+.|++|+...++++.
T Consensus       546 R~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl  625 (709)
T COG2274         546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL  625 (709)
T ss_pred             HhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence            4555555555544  789999998643211                                123456677777777777


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++||++||.+--||+.+.+.+.+-+..
T Consensus       626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~  654 (709)
T COG2274         626 SKPKILLLDEATSALDPETEAIILQNLLQ  654 (709)
T ss_pred             cCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence            78888888888888888888888777654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.1e-21  Score=168.21  Aligned_cols=148  Identities=14%  Similarity=0.152  Sum_probs=99.3

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A  150 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~  150 (229)
                      .++|+++|+++.|++..  ..+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..   .
T Consensus         5 ~~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~   79 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFE   79 (269)
T ss_pred             CceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            34799999999997531  127899999999999999999999999999999999999   99997 888875421   1


Q ss_pred             HhhcCCCcccCcc----hhhhHHHHHHcccccc---------------------------CCCCCCCCCCchhhhhhccC
Q 027060          151 HARRGAPWTFNPL----LLLNCLKNLRNQGSVY---------------------------APSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 ~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~  199 (229)
                      ..+..+.+.+|.+    ...++.+|+.+.....                           ...++.++.+++..+.++..
T Consensus        80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  159 (269)
T PRK13648         80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL  159 (269)
T ss_pred             HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence            2233444444443    1256677765532110                           00122344445444555555


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++++++|+|+..||....+.+.+++..
T Consensus       160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~  187 (269)
T PRK13648        160 NPSVIILDEATSMLDPDARQNLLDLVRK  187 (269)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            5666666666666666667777776653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.5e-21  Score=167.53  Aligned_cols=98  Identities=16%  Similarity=0.272  Sum_probs=72.7

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE-  149 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~-  149 (229)
                      ..++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|++...  .|++|. .++|+++.. 
T Consensus        18 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~   93 (268)
T PRK14248         18 KEHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS   93 (268)
T ss_pred             CCceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence            445799999999998654    899999999999999999999999999999999985200  147897 888876421 


Q ss_pred             ----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                          ...+.++.+.+|...+  .++.+|+.++
T Consensus        94 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~  125 (268)
T PRK14248         94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHA  125 (268)
T ss_pred             cccHHHHhccEEEEecCCccCcccHHHHHHHH
Confidence                1223344444444322  4888888754

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.3e-21  Score=167.59  Aligned_cols=96  Identities=18%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHH----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPK----  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~----  148 (229)
                      ++|+++||++.|++..    +|+|+||+|++||+++|+|+||||||||+++|+|++...  .|++|. .++|.++.    
T Consensus         9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   84 (264)
T PRK14243          9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV   84 (264)
T ss_pred             eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence            4799999999998654    799999999999999999999999999999999987510  026896 88886542    


Q ss_pred             -HHHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          149 -EAHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       149 -~~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                       ....+..+.+.+|...+  .++.+|+.++
T Consensus        85 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~  114 (264)
T PRK14243         85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYG  114 (264)
T ss_pred             ChHHHhhhEEEEccCCccccccHHHHHHhh
Confidence             11122334444443221  4888988764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.85  E-value=1.9e-21  Score=168.12  Aligned_cols=95  Identities=25%  Similarity=0.332  Sum_probs=71.2

Q ss_pred             eEEEeeeeEEcCccc-----cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-
Q 027060           77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~-----~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-  149 (229)
                      +|+++||++.|++..     ....+|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.++.. 
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~   78 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL   78 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence            589999999996310     01238999999999999999999999999999999999999   99997 888875421 


Q ss_pred             -----HHhhcCCCcccCcc-----hhhhHHHHHHc
Q 027060          150 -----AHARRGAPWTFNPL-----LLLNCLKNLRN  174 (229)
Q Consensus       150 -----~~~~~~~~~~~~~~-----~~~tv~e~l~~  174 (229)
                           ...+..+.+.+|..     ..+++.+|+.+
T Consensus        79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~  113 (265)
T TIGR02769        79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGE  113 (265)
T ss_pred             CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHH
Confidence                 11223345555542     22688888754

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.85  E-value=3e-21  Score=160.83  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=101.0

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      ..|+++++++.|++..  ..+|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ..
T Consensus         5 ~~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   79 (207)
T cd03369           5 GEIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED   79 (207)
T ss_pred             CeEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence            3589999999997531  127999999999999999999999999999999999999   99997 888876432   11


Q ss_pred             hhcCCCcccCcchh--hhHHHHHHcccccc-------------CCCCCCCCCCchhhhhhccCCccEEEecCCeeeeccc
Q 027060          152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  216 (229)
Q Consensus       152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP  216 (229)
                      .+..+.+.+|.+.+  .++.+|+.+.....             ...++.++.+++..+.++..+++++++|+++..||..
T Consensus        80 ~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~  159 (207)
T cd03369          80 LRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA  159 (207)
T ss_pred             HHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence            23344444444322  58889886532110             1122334445555555555566666666666666666


Q ss_pred             CHHHHHHHHhh
Q 027060          217 VWKDVSSMFDE  227 (229)
Q Consensus       217 ~~~~l~~~l~~  227 (229)
                      .+..+.+++..
T Consensus       160 ~~~~l~~~l~~  170 (207)
T cd03369         160 TDALIQKTIRE  170 (207)
T ss_pred             HHHHHHHHHHH
Confidence            67777777654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.85  E-value=2.3e-21  Score=168.61  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=71.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC--------Cce-EecCCCH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KAS-SFDSQDP  147 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~--------~G~-~~~g~~~  147 (229)
                      +|+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |+        +|. .++|.++
T Consensus         1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~   73 (272)
T PRK13547          1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL   73 (272)
T ss_pred             CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence            489999999998754    8999999999999999999999999999999999998   87        886 8888754


Q ss_pred             HH---HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          148 KE---AHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       148 ~~---~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ..   ...+..+.+.+|..   ..+|+.+|+.++
T Consensus        74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~  107 (272)
T PRK13547         74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG  107 (272)
T ss_pred             ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence            21   11122233333332   237899999774

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.4e-21  Score=181.20  Aligned_cols=147  Identities=20%  Similarity=0.188  Sum_probs=116.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|+.++ .+.+|+|+||+|++||++|||||||+||||+..+|..++.   |++|. .+||.++.+   ...
T Consensus       465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~l  540 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYL  540 (716)
T ss_pred             eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHH
Confidence            699999999999874 5568999999999999999999999999999999999999   99997 999998654   223


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~  198 (229)
                      +..++.+-|.+-+  -|+.|||.++....                                ....+.+++||.+.++++.
T Consensus       541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence            3344444444433  68999999985411                                0122356778888888888


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++|||+||-+--||......+.+.++.
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL~~  649 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEALDR  649 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence            88888888888888888888888877763

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.4e-21  Score=169.43  Aligned_cols=98  Identities=20%  Similarity=0.281  Sum_probs=72.9

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE-  149 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~-  149 (229)
                      +.++|+++|+++.|++..    +|+|+||+|.+||+++|+|+||||||||+++|+|+++..  .|++|. .++|.++.. 
T Consensus        36 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~  111 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK  111 (286)
T ss_pred             CceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence            445799999999998654    799999999999999999999999999999999985210  138897 888876431 


Q ss_pred             ----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                          ...+..+.+.+|.+.+  .++.+|+.++
T Consensus       112 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~  143 (286)
T PRK14275        112 FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYG  143 (286)
T ss_pred             ccchHHhhhcEEEECCCCCCCccCHHHHHHhH
Confidence                1123344444444322  4889998764

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.85  E-value=2.2e-21  Score=161.29  Aligned_cols=64  Identities=20%  Similarity=0.318  Sum_probs=55.6

Q ss_pred             EEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        78 i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      |+++||++.|++... ...+|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g   66 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG   66 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC
Confidence            478999999976410 0128999999999999999999999999999999999999   99997 7776

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.85  E-value=1.6e-21  Score=163.26  Aligned_cols=141  Identities=19%  Similarity=0.203  Sum_probs=96.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      ++++||++.|+.      .+.++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++... ..+..
T Consensus         1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   71 (213)
T TIGR01277         1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP   71 (213)
T ss_pred             CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence            468999999973      3569999999999999999999999999999999999   99997 8888764321 11233


Q ss_pred             CCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          156 APWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       156 ~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      +.+.+|.+   ..+|+.+|+.+......                           ..++.++.+++..+.++..++++++
T Consensus        72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  151 (213)
T TIGR01277        72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL  151 (213)
T ss_pred             eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            44444443   23689999875321100                           0122334444444555555566666


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...+..+.+++..
T Consensus       152 lDEPt~~LD~~~~~~~~~~l~~  173 (213)
T TIGR01277       152 LDEPFSALDPLLREEMLALVKQ  173 (213)
T ss_pred             EcCCCccCCHHHHHHHHHHHHH
Confidence            6666666666677777777654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.6e-21  Score=175.22  Aligned_cols=141  Identities=16%  Similarity=0.192  Sum_probs=96.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------  149 (229)
                      ||++ ||+|.|++..    +  |+||+|++||+++|+||||||||||+++|+|+++   |++|. .++|+++..      
T Consensus         1 ~l~~-~l~k~~~~~~----~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~   70 (352)
T PRK11144          1 MLEL-NFKQQLGDLC----L--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC   70 (352)
T ss_pred             CeEE-EEEEEeCCEE----E--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence            3778 9999998642    3  8999999999999999999999999999999999   99997 888865421      


Q ss_pred             -HHhhcCCCcccCcc---hhhhHHHHHHcccccc---------------------CCCCCCCCCCchhhhhhccCCccEE
Q 027060          150 -AHARRGAPWTFNPL---LLLNCLKNLRNQGSVY---------------------APSFDHGVGDPVEDDILVGLQHKVV  204 (229)
Q Consensus       150 -~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~rvL  204 (229)
                       ...+..+.+.+|.+   +.+|+.+|+.++....                     ...++.++.+++..+.++..++++|
T Consensus        71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll  150 (352)
T PRK11144         71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL  150 (352)
T ss_pred             cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence             11233444555543   3479999998753210                     0012234445555555555556666


Q ss_pred             EecCCeeeecccCHHHHHHHHhh
Q 027060          205 IVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       205 i~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++|+|+..||...+..+++++..
T Consensus       151 LLDEPts~LD~~~~~~l~~~L~~  173 (352)
T PRK11144        151 LMDEPLASLDLPRKRELLPYLER  173 (352)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHH
Confidence            66666666666667777776653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.4e-21  Score=165.61  Aligned_cols=95  Identities=18%  Similarity=0.248  Sum_probs=71.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      +|+++|+++.|++..    +|+|+||+|.+||+++|+|+||||||||+++|+|+++...|++|. .++|+++..   ...
T Consensus         2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~   77 (246)
T PRK14269          2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL   77 (246)
T ss_pred             ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence            588999999998654    899999999999999999999999999999999997411168997 888876421   122


Q ss_pred             hcCCCcccCcch--hhhHHHHHHcc
Q 027060          153 RRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      +..+.+.+|.+.  ..|+.+|+.++
T Consensus        78 ~~~i~~~~q~~~l~~~tv~eni~~~  102 (246)
T PRK14269         78 RKNVGMVFQQPNVFVKSIYENISYA  102 (246)
T ss_pred             hhhEEEEecCCccccccHHHHhhhH
Confidence            233444443322  26899998764

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.7e-21  Score=169.10  Aligned_cols=98  Identities=19%  Similarity=0.268  Sum_probs=72.6

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE-  149 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~-  149 (229)
                      +.++|+++||++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++..  .|++|. .++|.++.. 
T Consensus        36 ~~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~  111 (285)
T PRK14254         36 GETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA  111 (285)
T ss_pred             CCceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence            556899999999998654    899999999999999999999999999999999998510  147897 888875421 


Q ss_pred             ----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                          ...+..+.+.+|...+  .++.+|+.+.
T Consensus       112 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~  143 (285)
T PRK14254        112 DVDPVALRRRIGMVFQKPNPFPKSIYDNVAYG  143 (285)
T ss_pred             ccchHhhhccEEEEecCCccCcCCHHHHHHHH
Confidence                1122334444443221  4788888653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.7e-21  Score=165.75  Aligned_cols=94  Identities=18%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~  148 (229)
                      +.+|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |     ++|. .++|+++.
T Consensus         5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~   77 (259)
T PRK14260          5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY   77 (259)
T ss_pred             cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence            45799999999998654    8999999999999999999999999999999999987   5     4796 88887542


Q ss_pred             H-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          149 E-----AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       149 ~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      .     ...+.++.+.+|...  ..|+.+|+.++
T Consensus        78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~  111 (259)
T PRK14260         78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYG  111 (259)
T ss_pred             ccccchHhhhhheEEEecccccCCccHHHHHHHH
Confidence            1     112233444444432  27888988754

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=168.48  Aligned_cols=144  Identities=15%  Similarity=0.084  Sum_probs=96.2

Q ss_pred             eEEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      +|+++|+++.|++ ..    +|+|+||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|.++.....+.
T Consensus         6 ~l~~~~l~~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (272)
T PRK15056          6 GIVVNDVTVTWRNGHT----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKN   78 (272)
T ss_pred             eEEEEeEEEEecCCcE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccc
Confidence            5999999999963 33    7999999999999999999999999999999999999   99997 88887754322222


Q ss_pred             CCCcccCcch-----hhhHHHHHHcccc-------------------------c------cCCCCCCCCCCchhhhhhcc
Q 027060          155 GAPWTFNPLL-----LLNCLKNLRNQGS-------------------------V------YAPSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       155 ~~~~~~~~~~-----~~tv~e~l~~~~~-------------------------~------~~~~~~~~~~~~~~~~l~~~  198 (229)
                      .+.+.+|.+.     ..++.+++.++..                         +      ....++.++.+++..+.++.
T Consensus        79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~  158 (272)
T PRK15056         79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA  158 (272)
T ss_pred             eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            2333333321     1234444432100                         0      00112334445555555555


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++|+|+..||...++.+.+++..
T Consensus       159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~  187 (272)
T PRK15056        159 QQGQVILLDEPFTGVDVKTEARIISLLRE  187 (272)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            56666666666666666678888877754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.8e-21  Score=167.76  Aligned_cols=149  Identities=14%  Similarity=0.168  Sum_probs=97.2

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCce-EecCCCHHH--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~g~~~~~--  149 (229)
                      .++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++  ...|++|. .++|.++..  
T Consensus        22 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~   97 (271)
T PRK14238         22 KVVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS   97 (271)
T ss_pred             ceEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence            45799999999998654    8999999999999999999999999999999999985  11248897 888865421  


Q ss_pred             ---HHhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchh
Q 027060          150 ---AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVE  192 (229)
Q Consensus       150 ---~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~  192 (229)
                         ...+..+.+.+|.+.  ..++.+|+.++.....                                ..++.++.+++.
T Consensus        98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~  177 (271)
T PRK14238         98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC  177 (271)
T ss_pred             ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence               112233444444432  2588888875321100                                001123333433


Q ss_pred             hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.++..++++|++|+|+..||...+..+.+++..
T Consensus       178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  212 (271)
T PRK14238        178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQE  212 (271)
T ss_pred             HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            44444445555666666666665567777777654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.84  E-value=2.4e-21  Score=166.13  Aligned_cols=145  Identities=14%  Similarity=0.204  Sum_probs=96.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC-----HHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD-----PKE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~-----~~~  149 (229)
                      ++|+++|+++.|++..    +|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.+     +..
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ   74 (253)
T ss_pred             ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence            4799999999998654    7999999999999999999999999999999999999   99997 788765     321


Q ss_pred             ----HH---hhcCCCcccCcch-----hhhHHHHHHccc-----cc---------------c---------CCCCCCCCC
Q 027060          150 ----AH---ARRGAPWTFNPLL-----LLNCLKNLRNQG-----SV---------------Y---------APSFDHGVG  188 (229)
Q Consensus       150 ----~~---~~~~~~~~~~~~~-----~~tv~e~l~~~~-----~~---------------~---------~~~~~~~~~  188 (229)
                          ..   .+.++.+.+|...     ..++.+|+.+..     ..               .         ...++.++.
T Consensus        75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~  154 (253)
T TIGR02323        75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ  154 (253)
T ss_pred             CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence                11   1233444444421     135555553210     00               0         001223444


Q ss_pred             CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++..+.++..++++|++|+|+..||....+.+.+++..
T Consensus       155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~  193 (253)
T TIGR02323       155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG  193 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            555555555556666666666666666667777777653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.84  E-value=7.4e-22  Score=171.18  Aligned_cols=142  Identities=18%  Similarity=0.207  Sum_probs=94.6

Q ss_pred             EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H--
Q 027060           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A--  150 (229)
Q Consensus        79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~--  150 (229)
                      .++++++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++..     .  
T Consensus        26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~   98 (269)
T cd03294          26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE   98 (269)
T ss_pred             hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence            4678999998765    8999999999999999999999999999999999999   99997 888875421     1  


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      ..+..+.+.+|..   ..+|+.+|+.++.....                           ..++.++.+++..+.++..+
T Consensus        99 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~  178 (269)
T cd03294          99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD  178 (269)
T ss_pred             hhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            1122344444433   23689999876421110                           01223334444444444455


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|+|+..||...++.+.+++..
T Consensus       179 p~illLDEPt~~LD~~~~~~l~~~l~~  205 (269)
T cd03294         179 PDILLMDEAFSALDPLIRREMQDELLR  205 (269)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            555555555555555567777776643

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4.2e-21  Score=167.15  Aligned_cols=93  Identities=15%  Similarity=0.211  Sum_probs=71.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPKE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~~  149 (229)
                      ++|+++||++.|++..    +|+|+||+|++||+++|+|+||||||||+++|+|+++   |     ++|. .++|.++..
T Consensus        20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~   92 (276)
T PRK14271         20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN   92 (276)
T ss_pred             cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence            4799999999998754    8999999999999999999999999999999999988   6     5886 888865421


Q ss_pred             ----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          150 ----AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                          ...+..+.+.+|.+.  ..++.+|+.++
T Consensus        93 ~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~  124 (276)
T PRK14271         93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG  124 (276)
T ss_pred             cchhHHHhhheEEeccCCccCCccHHHHHHHH
Confidence                112233444444322  16899988764

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.84  E-value=2.3e-21  Score=153.33  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=95.0

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA  156 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~  156 (229)
                      |+++|+++.|++..    +++++||++++||+++|+|+||||||||+++|+|+++   |++|. .++|.        ..+
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~--------~~i   65 (144)
T cd03221           1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST--------VKI   65 (144)
T ss_pred             CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe--------EEE
Confidence            46899999998653    7999999999999999999999999999999999999   99997 77763        122


Q ss_pred             CcccCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       157 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.++                     ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus        66 ~~~~~---------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~  115 (144)
T cd03221          66 GYFEQ---------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE  115 (144)
T ss_pred             EEEcc---------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            23332                     667777888888888888899999999999998888888888753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.84  E-value=4.6e-21  Score=180.32  Aligned_cols=94  Identities=21%  Similarity=0.238  Sum_probs=78.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~~  153 (229)
                      .|+++||+++|++..   .+|+|+||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++...  ..+
T Consensus       334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr  407 (529)
T TIGR02868       334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR  407 (529)
T ss_pred             eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence            499999999997632   27999999999999999999999999999999999999   99997 8999875433  223


Q ss_pred             cCCCcccCcchh--hhHHHHHHccc
Q 027060          154 RGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       154 ~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      ..+.+.+|.+.+  -|++||+.++.
T Consensus       408 ~~i~~V~Q~~~lF~~TI~eNI~~g~  432 (529)
T TIGR02868       408 RRISVFAQDAHLFDTTVRDNLRLGR  432 (529)
T ss_pred             hheEEEccCcccccccHHHHHhccC
Confidence            456666666654  69999999863

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.1e-21  Score=172.01  Aligned_cols=100  Identities=17%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCce-EecCCCHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQDPK----  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~g~~~~----  148 (229)
                      |++|+++||++.|+.......+|+||||+|.+||++||+|+||||||||+++|+|+++.. .+++|. .++|+++.    
T Consensus         1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093          1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            458999999999953222234899999999999999999999999999999999998510 147896 88887542    


Q ss_pred             -HHH--hhcCCCcccCcch-----hhhHHHHHHc
Q 027060          149 -EAH--ARRGAPWTFNPLL-----LLNCLKNLRN  174 (229)
Q Consensus       149 -~~~--~~~~~~~~~~~~~-----~~tv~e~l~~  174 (229)
                       ...  ++..+.+.||.+.     .+++.+++.+
T Consensus        81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~  114 (330)
T PRK15093         81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ  114 (330)
T ss_pred             HHHHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence             111  1234556665542     3677777753

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.84  E-value=3.6e-21  Score=154.66  Aligned_cols=101  Identities=22%  Similarity=0.272  Sum_probs=85.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------  149 (229)
                      +|+++++++..+.....+.+|++|+|.|.+||.++||||+|||||||+-+++|+..   |++|+ ++.|++...      
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r   82 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR   82 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence            79999999999987778889999999999999999999999999999999999999   99997 899986321      


Q ss_pred             -HHhhcCCCcccCcchh---hhHHHHHHccccccC
Q 027060          150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA  180 (229)
Q Consensus       150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~  180 (229)
                       ..+...++++||.+.+   +|.+||+..+..+..
T Consensus        83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g  117 (228)
T COG4181          83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRG  117 (228)
T ss_pred             HHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence             2233446777776654   999999998766543

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.84  E-value=2.6e-21  Score=163.04  Aligned_cols=148  Identities=17%  Similarity=0.112  Sum_probs=100.4

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC-----H
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD-----P  147 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~-----~  147 (229)
                      ++++|+++||+..|+++.    +|+|||++|++||..+|+|||||||||||++++|...   |.+|. .+.|+.     .
T Consensus        28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~  100 (257)
T COG1119          28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET  100 (257)
T ss_pred             CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence            557899999999999987    9999999999999999999999999999999999999   98886 666652     2


Q ss_pred             -HHHHhhcCCCc--ccCcc-hhhhHHHHHHccccccC--------------------------------CCCCCCCCCch
Q 027060          148 -KEAHARRGAPW--TFNPL-LLLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPV  191 (229)
Q Consensus       148 -~~~~~~~~~~~--~~~~~-~~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~  191 (229)
                       .+.+.++|+..  ..+.+ ...+++|-+..+..-..                                ...+.++.+++
T Consensus       101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv  180 (257)
T COG1119         101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV  180 (257)
T ss_pred             hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence             44555666421  11111 11344444433221100                                11223444555


Q ss_pred             hhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       192 ~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      ..++++..++++||+|+++-+||-..+.++.+.++++
T Consensus       181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~  217 (257)
T COG1119         181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL  217 (257)
T ss_pred             HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence            5555555566666666666666666788888887764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.84  E-value=4.2e-21  Score=155.53  Aligned_cols=141  Identities=20%  Similarity=0.230  Sum_probs=97.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~~~  154 (229)
                      +|.+++|.+.|+...    .  .++++|+.||+++|+||+||||||||++|+|++.   |.+|+ .++|++... ....+
T Consensus         1 ~l~L~~V~~~y~~~~----~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R   71 (231)
T COG3840           1 MLALDDVRFSYGHLP----M--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER   71 (231)
T ss_pred             CccccceEEeeCcce----E--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence            367899999998754    4  7889999999999999999999999999999999   99997 899987432 12223


Q ss_pred             CCCcccCc---chhhhHHHHHHccccccCCCC---------------CCCCCCchhhhhhccCCccE-----EEecCCee
Q 027060          155 GAPWTFNP---LLLLNCLKNLRNQGSVYAPSF---------------DHGVGDPVEDDILVGLQHKV-----VIVDGNYL  211 (229)
Q Consensus       155 ~~~~~~~~---~~~~tv~e~l~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~rv-----Li~d~~~L  211 (229)
                      -+.+.||.   +..+||.+|+.++.......-               -.+..++.+..++.|+++|+     ++.+-|++
T Consensus        72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil  151 (231)
T COG3840          72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL  151 (231)
T ss_pred             ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence            34444444   445999999999865321100               01233455555555554443     56666666


Q ss_pred             eeccc-------CHHHHHHHHh
Q 027060          212 FLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       212 lLDEP-------~~~~l~~~l~  226 (229)
                      +||||       -+.++..++.
T Consensus       152 LLDEPFsALdP~LR~eMl~Lv~  173 (231)
T COG3840         152 LLDEPFSALDPALRAEMLALVS  173 (231)
T ss_pred             EecCchhhcCHHHHHHHHHHHH
Confidence            66666       4666665543

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=6.4e-21  Score=168.25  Aligned_cols=98  Identities=20%  Similarity=0.236  Sum_probs=73.4

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE-  149 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~-  149 (229)
                      +.++|+++||++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++..  .|++|. .++|.++.. 
T Consensus        42 ~~~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~  117 (305)
T PRK14264         42 GDAKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD  117 (305)
T ss_pred             CCceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence            455799999999998754    899999999999999999999999999999999998510  147897 888865421 


Q ss_pred             ----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          150 ----AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                          ...+..+.+.+|...  ..++.+|+.++
T Consensus       118 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~  149 (305)
T PRK14264        118 GVNLVELRKRVGMVFQSPNPFPKSIRENISYG  149 (305)
T ss_pred             cccHHHHhhceEEEccCCccccccHHHHHHhH
Confidence                112233444444432  15888888764

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.84  E-value=4.8e-21  Score=170.85  Aligned_cols=151  Identities=15%  Similarity=0.223  Sum_probs=98.0

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHH-
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPK-  148 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~-  148 (229)
                      .+++|+++||++.|+.......+++|+||+|.+||++||+|+||||||||+++|+|+++   |.   +|. .++|+++. 
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~   85 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN   85 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence            45689999999999643223348999999999999999999999999999999999998   85   896 88887642 


Q ss_pred             ----HHH--hhcCCCcccCcch-----hhhHHHHHHcccccc-------------------------------CCCCCCC
Q 027060          149 ----EAH--ARRGAPWTFNPLL-----LLNCLKNLRNQGSVY-------------------------------APSFDHG  186 (229)
Q Consensus       149 ----~~~--~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~-------------------------------~~~~~~~  186 (229)
                          ...  +...+.+.||.+.     .+++.+++......+                               ...++.+
T Consensus        86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG  165 (330)
T PRK09473         86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG  165 (330)
T ss_pred             CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence                111  1234666666642     256666554321110                               0012233


Q ss_pred             CCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       187 ~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +.+++..+.++..++++||+|+++-.||.-.+.++.++|..
T Consensus       166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~  206 (330)
T PRK09473        166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE  206 (330)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            34444444444444555555555555555567777776654

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.84  E-value=4.3e-21  Score=164.34  Aligned_cols=146  Identities=19%  Similarity=0.182  Sum_probs=96.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCCCCce-EecCCCHHH--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~g~~~~~--  149 (229)
                      .++|++++|++.|++..    +|+++||+|.+||++||+|+||||||||+++|+|+  ++   |++|. .++|.++..  
T Consensus         5 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~   77 (252)
T CHL00131          5 KPILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLE   77 (252)
T ss_pred             CceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCC
Confidence            34799999999998654    89999999999999999999999999999999998  57   89997 888865422  


Q ss_pred             --HHhhcCCCcccCcc---hhhhHHHHHHccccc---------------------------------c--CC-CCCCCCC
Q 027060          150 --AHARRGAPWTFNPL---LLLNCLKNLRNQGSV---------------------------------Y--AP-SFDHGVG  188 (229)
Q Consensus       150 --~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~---------------------------------~--~~-~~~~~~~  188 (229)
                        ...+.++.+.+|..   ...++.+++.+....                                 .  .. .++.++.
T Consensus        78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~  157 (252)
T CHL00131         78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEK  157 (252)
T ss_pred             hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHH
Confidence              11222343343332   224555554432100                                 0  00 1233344


Q ss_pred             CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++..+.++..+++++++|+|+..||...++.+.+++.+
T Consensus       158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  196 (252)
T CHL00131        158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK  196 (252)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            444444555555666666666666666677888777754

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.2e-21  Score=162.86  Aligned_cols=148  Identities=14%  Similarity=0.182  Sum_probs=96.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCce-EecCCCHHH---
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQDPKE---  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~g~~~~~---  149 (229)
                      .+|+++||++.|++..    +|+|+||+|.+||+++|+|+||||||||+++|+|++..  ..|++|. .++|.++..   
T Consensus         2 ~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   77 (250)
T PRK14266          2 YRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV   77 (250)
T ss_pred             cEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence            4689999999998654    89999999999999999999999999999999998641  1137897 888876421   


Q ss_pred             --HHhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhh
Q 027060          150 --AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVED  193 (229)
Q Consensus       150 --~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~  193 (229)
                        ...+..+.+.+|...  ..++.+|+.++.....                                ..++.++.+++..
T Consensus        78 ~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l  157 (250)
T PRK14266         78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI  157 (250)
T ss_pred             cHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence              112233444444322  2588888875421110                                0111233334444


Q ss_pred             hhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       194 ~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +.++..+++++++|+++..||...+..+.+++..
T Consensus       158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~  191 (250)
T PRK14266        158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK  191 (250)
T ss_pred             HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            4444555555666666666666567777777654

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=6.2e-21  Score=165.61  Aligned_cols=149  Identities=17%  Similarity=0.188  Sum_probs=96.8

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~--  149 (229)
                      .++|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++..  .|++|. .++|.++..  
T Consensus        23 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~   98 (272)
T PRK14236         23 QTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK   98 (272)
T ss_pred             CcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence            34799999999998654    899999999999999999999999999999999998600  127897 888876421  


Q ss_pred             ---HHhhcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCchh
Q 027060          150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVE  192 (229)
Q Consensus       150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~  192 (229)
                         ...+..+.+.+|...+  .|+.+|+.+......                                ..++.++.+++.
T Consensus        99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~  178 (272)
T PRK14236         99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV  178 (272)
T ss_pred             cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence               1223344444443221  488888875421110                                001122333444


Q ss_pred             hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.++..+++++++|+|+..||...+..+.+++..
T Consensus       179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~  213 (272)
T PRK14236        179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITE  213 (272)
T ss_pred             HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            44444455555666666666665567777776653

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=5.8e-21  Score=163.61  Aligned_cols=95  Identities=19%  Similarity=0.273  Sum_probs=70.6

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC---CCce-EecCCCHHH--
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQDPKE--  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p---~~G~-~~~g~~~~~--  149 (229)
                      ++|+++||++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|+++. .|   ++|. .++|.++..  
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14255          4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN   78 (252)
T ss_pred             ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence            4799999999998644    89999999999999999999999999999999998630 03   4886 888875421  


Q ss_pred             ---HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                         ...+..+.+.+|.+.+  .++.+|+.+.
T Consensus        79 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~  109 (252)
T PRK14255         79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYG  109 (252)
T ss_pred             ccHHHhcCeEEEEECCCccCCCcHHHHHHHH
Confidence               1222344444444321  5888888754

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.84  E-value=5e-21  Score=181.42  Aligned_cols=88  Identities=15%  Similarity=0.042  Sum_probs=68.6

Q ss_pred             CCeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060           75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA  152 (229)
Q Consensus        75 ~~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~  152 (229)
                      +++|+++||++.|+ +..    +|+|+||+|.+|++++|+||||||||||+++|+|+++   |++|. .+++.      .
T Consensus         4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~------~   70 (556)
T PRK11819          4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG------I   70 (556)
T ss_pred             cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC------C
Confidence            35899999999998 544    8999999999999999999999999999999999999   99997 55532      1


Q ss_pred             hcCC-CcccCcchhhhHHHHHHcc
Q 027060          153 RRGA-PWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~-~~~~~~~~~~tv~e~l~~~  175 (229)
                      .+++ ++.+.....+|+.+|+.++
T Consensus        71 ~i~~v~Q~~~~~~~~tv~e~l~~~   94 (556)
T PRK11819         71 KVGYLPQEPQLDPEKTVRENVEEG   94 (556)
T ss_pred             EEEEEecCCCCCCCCcHHHHHHHh
Confidence            2232 2332223346888887653

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.84  E-value=1.1e-21  Score=157.26  Aligned_cols=144  Identities=18%  Similarity=0.219  Sum_probs=97.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .++++++.+.-++..    +|+++||.+.+||+++|.||+|||||||+|+++.++.   |++|. ++.|+++..   ...
T Consensus         3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~   75 (223)
T COG4619           3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY   75 (223)
T ss_pred             chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence            456666655555554    8999999999999999999999999999999999999   99998 899997532   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccCCCCC--------------------------CCCCCchhhhhhccCCccEE
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFD--------------------------HGVGDPVEDDILVGLQHKVV  204 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~rvL  204 (229)
                      |..+.+.-|.+.+  .||.+|+.|+..++...++                          .+..++......+.-.++||
T Consensus        76 Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~IL  155 (223)
T COG4619          76 RQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKIL  155 (223)
T ss_pred             HHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceE
Confidence            3333333333333  6899999987665432222                          22233333333333345556


Q ss_pred             EecCCeeeecccCHHHHHHHHhh
Q 027060          205 IVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       205 i~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++|+.+.-|||-+.+.+.+++..
T Consensus       156 LLDE~TsALD~~nkr~ie~mi~~  178 (223)
T COG4619         156 LLDEITSALDESNKRNIEEMIHR  178 (223)
T ss_pred             EecCchhhcChhhHHHHHHHHHH
Confidence            66666666666678888777653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.84  E-value=8.1e-21  Score=176.34  Aligned_cols=151  Identities=22%  Similarity=0.285  Sum_probs=111.4

Q ss_pred             CCCeEEEeeeeEEcCcc-------ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~-------~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      ..++++++||++.|...       ...+.+++||||+|.+||++||||++|||||||.|+|+|+++   |++|. .++|.
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~  353 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ  353 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence            46789999999999842       134678999999999999999999999999999999999999   99997 88887


Q ss_pred             CH--H---HHHhhcCCCcccCcch-----hhhHHHHHHcccccc-----------------------------CCCCCCC
Q 027060          146 DP--K---EAHARRGAPWTFNPLL-----LLNCLKNLRNQGSVY-----------------------------APSFDHG  186 (229)
Q Consensus       146 ~~--~---~~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~-----------------------------~~~~~~~  186 (229)
                      +.  .   ....+..+.+.||++.     .+||.+.+.....++                             -..++.+
T Consensus       354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG  433 (539)
T COG1123         354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG  433 (539)
T ss_pred             ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence            61  1   1122233444555443     278888777543322                             1234566


Q ss_pred             CCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       187 ~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +.+|+..+.++..++++|++||++--||...+.++.+++..
T Consensus       434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~  474 (539)
T COG1123         434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD  474 (539)
T ss_pred             hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence            67777777777777777777777777777778888887754

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.84  E-value=1.2e-21  Score=183.48  Aligned_cols=168  Identities=20%  Similarity=0.169  Sum_probs=109.0

Q ss_pred             hHHHhhcCCCCCcc--ccccccchhhhhHHHH-----------------hhcc--CCCCCeEEEeeeeEEcCcccccccc
Q 027060           38 SFSWIRRNANAQPV--FGKTRSLVQNKTSLKV-----------------LCSQ--RREIPVVEARCMDEVYDALAQRLLP   96 (229)
Q Consensus        38 ~~~~~rr~~~~~~~--~~~~r~~~~~~~~~~~-----------------~~~~--~~~~~~i~~~~ls~~y~~~~~~~~~   96 (229)
                      .++|++|+.+.+.+  ++++|...  ..+++.                 +...  ..+..+++++|+++.|++..   .+
T Consensus       263 ~~~~i~r~~~~~~~~k~a~sr~k~--l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~---~l  337 (530)
T COG0488         263 EQEWIRRGKAAASKAKKAKSRIKR--LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR---LL  337 (530)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHH--HHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCc---ee
Confidence            46999998877666  55555322  222220                 0001  12567999999999997641   27


Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCCCcccCc-chhhhHHHHHHcc
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNP-LLLLNCLKNLRNQ  175 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~~~~~~~-~~~~tv~e~l~~~  175 (229)
                      ++++||.|.+|+++||+||||+|||||||+|+|.+.   |.+|....|..+...+.    .+.... ....++++++...
T Consensus       338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v~igyf----~Q~~~~l~~~~t~~d~l~~~  410 (530)
T COG0488         338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETVKIGYF----DQHRDELDPDKTVLEELSEG  410 (530)
T ss_pred             ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCceEEEEE----EehhhhcCccCcHHHHHHhh
Confidence            899999999999999999999999999999999999   99998666654321111    111100 1223666666543


Q ss_pred             ccc----------cCCCCCCCCCCchhhhhhccCCccE-----EEecCCeeeecccC
Q 027060          176 GSV----------YAPSFDHGVGDPVEDDILVGLQHKV-----VIVDGNYLFLDGGV  217 (229)
Q Consensus       176 ~~~----------~~~~~~~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP~  217 (229)
                      ..-          ....|+.....+....++.|++.|+     ++..||+|+||||+
T Consensus       411 ~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT  467 (530)
T COG0488         411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT  467 (530)
T ss_pred             CccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence            311          0112333333444556677776665     77788999999995

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=6.6e-21  Score=164.42  Aligned_cols=93  Identities=18%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDPKE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~~~  149 (229)
                      ++|+++|+++.|++..    +|+|+||+|++|++++|+|+||||||||+++|+|+++   |+     +|. .++|+++..
T Consensus         6 ~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~   78 (261)
T PRK14258          6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE   78 (261)
T ss_pred             ceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence            4799999999998653    7999999999999999999999999999999999998   75     686 788876421


Q ss_pred             -----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          150 -----AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       150 -----~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                           ...+..+.+.++...  ..++.+|+.+.
T Consensus        79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~  111 (261)
T PRK14258         79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG  111 (261)
T ss_pred             cccchHHhhccEEEEecCCccCcccHHHHHHHH
Confidence                 122333444343321  26888888753

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=6.7e-21  Score=164.56  Aligned_cols=145  Identities=19%  Similarity=0.189  Sum_probs=99.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPKE  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~~  149 (229)
                      +++.++++++.|++..    +|+++||+|++||+++|+|+||||||||+++|+|+++   |     ++|. .++|+++..
T Consensus         7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~   79 (261)
T PRK14263          7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG   79 (261)
T ss_pred             ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence            4799999999998754    8999999999999999999999999999999999997   6     6897 888876531


Q ss_pred             -----HHhhcCCCcccCcch--hhhHHHHHHccccccC------------------------------CCCCCCCCCchh
Q 027060          150 -----AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA------------------------------PSFDHGVGDPVE  192 (229)
Q Consensus       150 -----~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~------------------------------~~~~~~~~~~~~  192 (229)
                           ...+..+.+.+|...  .+++.+|+.++.....                              ..++.++.+++.
T Consensus        80 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~  159 (261)
T PRK14263         80 KGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLC  159 (261)
T ss_pred             cccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence                 122333444444432  3788899876432110                              011223334444


Q ss_pred             hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.++..+++++++|+|+..||...+.++.+++.+
T Consensus       160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~  194 (261)
T PRK14263        160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVE  194 (261)
T ss_pred             HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            44444555566666666666666667777777764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.84  E-value=1.4e-21  Score=176.13  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=66.8

Q ss_pred             EEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H--HhhcCC
Q 027060           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A--HARRGA  156 (229)
Q Consensus        85 ~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~--~~~~~~  156 (229)
                      |.|++..    +|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.++..     .  .++..+
T Consensus         1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i   73 (363)
T TIGR01186         1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI   73 (363)
T ss_pred             CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence            4566654    8999999999999999999999999999999999999   99997 888875421     1  113445


Q ss_pred             CcccCcc---hhhhHHHHHHccc
Q 027060          157 PWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       157 ~~~~~~~---~~~tv~e~l~~~~  176 (229)
                      .+.||.+   +.+|+.+|+.++.
T Consensus        74 ~~v~Q~~~l~~~~TV~eNi~~~~   96 (363)
T TIGR01186        74 GMVFQQFALFPHMTILQNTSLGP   96 (363)
T ss_pred             EEEECCCcCCCCCCHHHHHHHHH
Confidence            5555444   3479999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.83  E-value=6.8e-21  Score=183.07  Aligned_cols=139  Identities=15%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhh
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR  153 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~  153 (229)
                      +..+|+++||++.|++..    +|+++||+|.+|+++||+||||||||||+++|+|+++   |++|....|.++     .
T Consensus       316 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~~-----~  383 (635)
T PRK11147        316 GKIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTKL-----E  383 (635)
T ss_pred             CCceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCCc-----E
Confidence            445899999999998754    8999999999999999999999999999999999999   999973336432     2


Q ss_pred             cCCCcccCc----chhhhHHHHHHccccccC-C-------------CCCCCCCCchhhhhhccCCccE-----EEecCCe
Q 027060          154 RGAPWTFNP----LLLLNCLKNLRNQGSVYA-P-------------SFDHGVGDPVEDDILVGLQHKV-----VIVDGNY  210 (229)
Q Consensus       154 ~~~~~~~~~----~~~~tv~e~l~~~~~~~~-~-------------~~~~~~~~~~~~~l~~~~~~rv-----Li~d~~~  210 (229)
                      ++  +.+|.    +..+|+.+|+.+...... .             .+.....++....++.|+++|+     ++.+|++
T Consensus       384 i~--y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l  461 (635)
T PRK11147        384 VA--YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL  461 (635)
T ss_pred             EE--EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence            23  22332    223688888876421100 0             0000111233344555555544     5566666


Q ss_pred             eeeccc-------CHHHHHHHHh
Q 027060          211 LFLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       211 LlLDEP-------~~~~l~~~l~  226 (229)
                      |+||||       ....+.+++.
T Consensus       462 LlLDEPt~~LD~~~~~~l~~~l~  484 (635)
T PRK11147        462 LILDEPTNDLDVETLELLEELLD  484 (635)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHH
Confidence            666666       4566666554

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.83  E-value=3.6e-21  Score=173.09  Aligned_cols=137  Identities=13%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-------HHhh
Q 027060           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-------AHAR  153 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-------~~~~  153 (229)
                      ||++.|++..     + ++||+|++||+++|+||||||||||+++|+|+++   |++|. .++|+++..       ...+
T Consensus         4 ~l~~~~~~~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~   74 (354)
T TIGR02142         4 RFSKRLGDFS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK   74 (354)
T ss_pred             EEEEEECCEE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence            7999998642     4 8999999999999999999999999999999999   99997 888876421       1123


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccccccC-------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA-------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      ..+.+.+|.+   +.+|+.+|+.++.....                         ..++.++.+++..+.++..++++|+
T Consensus        75 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll  154 (354)
T TIGR02142        75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL  154 (354)
T ss_pred             CCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            3444444443   34799999987532110                         0122334444444455555555566


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...+..+.+++..
T Consensus       155 LDEPts~LD~~~~~~l~~~L~~  176 (354)
T TIGR02142       155 MDEPLAALDDPRKYEILPYLER  176 (354)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHH
Confidence            6666666666567777776654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.83  E-value=4.2e-21  Score=162.11  Aligned_cols=99  Identities=14%  Similarity=0.128  Sum_probs=73.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG  155 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~  155 (229)
                      ++.++||++.|++......+|+|+||+|.+||+++|+||||||||||+++|+|+++...|++|. .++|.++.....+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            5789999999965311123899999999999999999999999999999999987511147886 888876543333344


Q ss_pred             CCcccCcc---hhhhHHHHHHcc
Q 027060          156 APWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       156 ~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      +.+.+|..   ..+|+.+|+.+.
T Consensus        83 i~~~~q~~~~~~~~tv~enl~~~  105 (226)
T cd03234          83 VAYVRQDDILLPGLTVRETLTYT  105 (226)
T ss_pred             EEEeCCCCccCcCCcHHHHHHHH
Confidence            44445443   236899999864

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.83  E-value=3.5e-21  Score=158.35  Aligned_cols=129  Identities=17%  Similarity=0.174  Sum_probs=83.9

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HHHhhcCCCcccCcc----hh
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EAHARRGAPWTFNPL----LL  165 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~~~~~~~~~~~~~~----~~  165 (229)
                      +|+++||+|.+||+++|+||||||||||+++|+|+++   |++|. .++|.++.     ....+..+.+.+|.+    ..
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   83 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA   83 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence            7999999999999999999999999999999999999   99997 88886542     111223344444443    12


Q ss_pred             hhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCH
Q 027060          166 LNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW  218 (229)
Q Consensus       166 ~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~  218 (229)
                      .|+.+|+.+......                           ..++.++.+++..+.++...++++++|+|+..||...+
T Consensus        84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            688999876421110                           01112333344444444445555555555555555567


Q ss_pred             HHHHHHHhh
Q 027060          219 KDVSSMFDE  227 (229)
Q Consensus       219 ~~l~~~l~~  227 (229)
                      +.+.+++..
T Consensus       164 ~~~~~~l~~  172 (190)
T TIGR01166       164 EQMLAILRR  172 (190)
T ss_pred             HHHHHHHHH
Confidence            777777654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.83  E-value=7.2e-21  Score=163.50  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=58.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCce-EecCCCHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQDPK  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p----~~G~-~~~g~~~~  148 (229)
                      +|+++|+++.| +..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |    ++|. .++|.++.
T Consensus         4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~   72 (254)
T PRK10418          4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVA   72 (254)
T ss_pred             EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeecc
Confidence            69999999999 433    7999999999999999999999999999999999998   8    8997 88887653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.83  E-value=4.4e-21  Score=173.85  Aligned_cols=139  Identities=14%  Similarity=0.131  Sum_probs=92.2

Q ss_pred             eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC----CHH-----HH-
Q 027060           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ----DPK-----EA-  150 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~----~~~-----~~-  150 (229)
                      ++.+.|+...    +|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|. +++|+    ++.     .. 
T Consensus        29 ~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~  101 (382)
T TIGR03415        29 EILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR  101 (382)
T ss_pred             HHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence            3455555543    8999999999999999999999999999999999999   99997 88884    221     11 


Q ss_pred             -HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          151 -HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 -~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                       .++..+.+.||.+   +.+|+.+|+.++.....                           ..++.++.+++..+.++..
T Consensus       102 ~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~  181 (382)
T TIGR03415       102 RLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM  181 (382)
T ss_pred             HHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence             1223455555554   34799999987642211                           0122334444444444555


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|+++..||...++++.+++..
T Consensus       182 ~P~ILLlDEPts~LD~~~r~~l~~~L~~  209 (382)
T TIGR03415       182 DADILLMDEPFSALDPLIRTQLQDELLE  209 (382)
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            5555555555555555567777776643

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=8.8e-21  Score=163.49  Aligned_cols=94  Identities=21%  Similarity=0.239  Sum_probs=71.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec------CCCH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD------SQDP  147 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~------g~~~  147 (229)
                      .++|+++++++.|++..    +|+|+||+|.+||+++|+|+||||||||+++|+|++.   |++|. .++      |.++
T Consensus         8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~   80 (257)
T PRK14246          8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI   80 (257)
T ss_pred             hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence            35799999999998765    8999999999999999999999999999999999999   98864 444      4443


Q ss_pred             H---HHHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          148 K---EAHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       148 ~---~~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      .   ....+..+.+.++.+   ..+|+.+|+.++
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~  114 (257)
T PRK14246         81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP  114 (257)
T ss_pred             ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence            2   112233444444443   236899998864

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.83  E-value=4.8e-21  Score=162.83  Aligned_cols=142  Identities=14%  Similarity=0.223  Sum_probs=98.9

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      |+++|+++.|++.     +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++... ..+..
T Consensus         1 l~~~~l~~~~~~~-----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~   72 (235)
T cd03299           1 LKVENLSKDWKEF-----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD   72 (235)
T ss_pred             CeeEeEEEEeCCc-----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence            4689999999752     6999999999999999999999999999999999999   99997 8888764321 11233


Q ss_pred             CCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          156 APWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       156 ~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      +.+.++.   +..+++.+|+.+......                           ..++.++.+++..+.++..++++++
T Consensus        73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  152 (235)
T cd03299          73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL  152 (235)
T ss_pred             EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            3333333   223688888875421110                           0123344555555555666666677


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...+..+.+++..
T Consensus       153 lDEPt~gLD~~~~~~l~~~l~~  174 (235)
T cd03299         153 LDEPFSALDVRTKEKLREELKK  174 (235)
T ss_pred             ECCCcccCCHHHHHHHHHHHHH
Confidence            7777777777677777776643

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.83  E-value=1.2e-20  Score=158.45  Aligned_cols=91  Identities=11%  Similarity=0.153  Sum_probs=69.9

Q ss_pred             EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-------H
Q 027060           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-------A  150 (229)
Q Consensus        79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-------~  150 (229)
                      .+.++.+.|++..   .+|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.++..       .
T Consensus         2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (218)
T cd03290           2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS   75 (218)
T ss_pred             eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence            5789999997532   27999999999999999999999999999999999999   99997 888875421       1


Q ss_pred             HhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          151 HARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      ..+.++.+.+|.+.  ..++.+|+.+.
T Consensus        76 ~~~~~i~~~~q~~~~~~~t~~~nl~~~  102 (218)
T cd03290          76 RNRYSVAYAAQKPWLLNATVEENITFG  102 (218)
T ss_pred             hhcceEEEEcCCCccccccHHHHHhhc
Confidence            12233444444432  36888988764

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=1.7e-20  Score=160.64  Aligned_cols=144  Identities=17%  Similarity=0.256  Sum_probs=110.1

Q ss_pred             CCeEEEeeeeEEcCccc----c-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALA----Q-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~----~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~  148 (229)
                      +++++++|+++.|.-..    . .+.+++||||+|++||++||||+||||||||-|+|+|+++   |++|. +++|+++.
T Consensus         2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~   78 (268)
T COG4608           2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT   78 (268)
T ss_pred             CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence            46899999999996432    1 2568999999999999999999999999999999999999   99997 88998753


Q ss_pred             HHHhhcCCCcccCcchhhhHHHHHHccc---cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHH
Q 027060          149 EAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  225 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l  225 (229)
                      ...      ..-........++.+....   .-+-..++.++.||+..+.++..++++++.|+++-.||-..+.++.+++
T Consensus        79 ~~~------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL  152 (268)
T COG4608          79 KLS------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL  152 (268)
T ss_pred             hcc------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHH
Confidence            321      0000001123333333221   1233467788999999999999999999999999999999999998887


Q ss_pred             hh
Q 027060          226 DE  227 (229)
Q Consensus       226 ~~  227 (229)
                      ..
T Consensus       153 ~d  154 (268)
T COG4608         153 KD  154 (268)
T ss_pred             HH
Confidence            54

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.83  E-value=7.4e-21  Score=177.94  Aligned_cols=93  Identities=20%  Similarity=0.236  Sum_probs=73.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCce-EecCCCHHH----
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQDPKE----  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~g~~~~~----  149 (229)
                      +|+++|+++.|++..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |  ++|. .++|+++..    
T Consensus         1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~   73 (500)
T TIGR02633         1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR   73 (500)
T ss_pred             CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence            489999999998654    8999999999999999999999999999999999988   7  6897 888875421    


Q ss_pred             HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060          150 AHARRGAPWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~~  176 (229)
                      ...+..+.+.+|.+   ..+++.+|+.++.
T Consensus        74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~  103 (500)
T TIGR02633        74 DTERAGIVIIHQELTLVPELSVAENIFLGN  103 (500)
T ss_pred             HHHhCCEEEEeeccccCCCCcHHHHHHhhc
Confidence            11233455555543   3378999987653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.83  E-value=1.4e-20  Score=162.13  Aligned_cols=147  Identities=14%  Similarity=0.094  Sum_probs=94.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      ..|+++|+++.|++..  ..+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..   ..
T Consensus        18 ~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~~   92 (257)
T cd03288          18 GEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLHT   92 (257)
T ss_pred             ceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHHH
Confidence            4699999999997621  127999999999999999999999999999999999999   99997 888876532   11


Q ss_pred             hhcCCCcccCcch--hhhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhcc
Q 027060          152 ARRGAPWTFNPLL--LLNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       152 ~~~~~~~~~~~~~--~~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~  198 (229)
                      .+..+.+.+|.+.  ..++.+|+.......                               ...++.++.+++..+.++.
T Consensus        93 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~  172 (257)
T cd03288          93 LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV  172 (257)
T ss_pred             HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence            1222333333322  146666664321100                               0012223344444444445


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++|+|+..||......+.+++..
T Consensus       173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~  201 (257)
T cd03288         173 RKSSILIMDEATASIDMATENILQKVVMT  201 (257)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            55555555555555555566777776653

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.4e-20  Score=162.61  Aligned_cols=93  Identities=17%  Similarity=0.203  Sum_probs=70.3

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH-
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK-  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~-  148 (229)
                      .+|+++|+++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|++.   |     ++|. .++|.++. 
T Consensus        15 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~~   87 (265)
T PRK14252         15 QKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVNI   87 (265)
T ss_pred             ceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccccc
Confidence            4699999999998654    8999999999999999999999999999999999987   5     6886 78776432 


Q ss_pred             ------HHHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          149 ------EAHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       149 ------~~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                            ....+.++.+.++...  ..++.+|+.++
T Consensus        88 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~  122 (265)
T PRK14252         88 LSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG  122 (265)
T ss_pred             cccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence                  1122333434443321  14888888754

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.83  E-value=8e-21  Score=159.01  Aligned_cols=136  Identities=17%  Similarity=0.205  Sum_probs=90.7

Q ss_pred             eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-------HHhh
Q 027060           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-------AHAR  153 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-------~~~~  153 (229)
                      +|+|+|++..    +  |+||+|.+ |+++|+|+||||||||+++|+|+++   |++|. .++|.++..       ...+
T Consensus         5 ~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~   74 (214)
T cd03297           5 DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQQ   74 (214)
T ss_pred             eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhHh
Confidence            8999999853    4  99999999 9999999999999999999999999   99997 888865421       1112


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccccccC-------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA-------------------------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      ..+.+.+|..   ..+|+.+|+.+......                         ..++.++.+++..+.++...+++++
T Consensus        75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  154 (214)
T cd03297          75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL  154 (214)
T ss_pred             hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3344444443   23688888875422100                         0122233444444445555555666


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+|+..||...++.+.+++..
T Consensus       155 lDEPt~~LD~~~~~~l~~~l~~  176 (214)
T cd03297         155 LDEPFSALDRALRLQLLPELKQ  176 (214)
T ss_pred             EcCCcccCCHHHHHHHHHHHHH
Confidence            6666666666567777776653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.83  E-value=1.2e-20  Score=161.21  Aligned_cols=64  Identities=23%  Similarity=0.344  Sum_probs=57.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-EecCCCH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~g~~~  147 (229)
                      +|+++|+++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|++  +   |++|. .++|.++
T Consensus         1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~   67 (248)
T PRK09580          1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDL   67 (248)
T ss_pred             CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCcc
Confidence            488999999998654    899999999999999999999999999999999994  7   89997 8888764

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=3.1e-20  Score=184.06  Aligned_cols=145  Identities=19%  Similarity=0.218  Sum_probs=116.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      .|+++||+++|+.++ .+.+|+++||.|++|+.++|||+|||||||++++|.+++.   |++|. .++|.++..     .
T Consensus       350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l  425 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL  425 (1228)
T ss_pred             ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence            599999999999874 5668999999999999999999999999999999999999   99997 999997543     3


Q ss_pred             HhhcCCCcccCcc--hhhhHHHHHHccccc--------------------------------cCCCCCCCCCCchhhhhh
Q 027060          151 HARRGAPWTFNPL--LLLNCLKNLRNQGSV--------------------------------YAPSFDHGVGDPVEDDIL  196 (229)
Q Consensus       151 ~~~~~~~~~~~~~--~~~tv~e~l~~~~~~--------------------------------~~~~~~~~~~~~~~~~l~  196 (229)
                      +..+|+  ++|.+  ...|+.||+.++..-                                .....+.++++|++.+++
T Consensus       426 r~~igl--V~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa  503 (1228)
T KOG0055|consen  426 RSQIGL--VSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA  503 (1228)
T ss_pred             HhhcCe--eeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence            444444  44444  348999999998521                                012244567778888888


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..+++||++||.+-.||....+.+.+.+|.
T Consensus       504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~  534 (1228)
T KOG0055|consen  504 LVRNPKILLLDEATSALDAESERVVQEALDK  534 (1228)
T ss_pred             HHhCCCEEEecCcccccCHHHHHHHHHHHHH
Confidence            8788888888888888888888888888774

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.82  E-value=6.7e-21  Score=162.11  Aligned_cols=77  Identities=19%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhcCCCccc----CcchhhhH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARRGAPWTF----NPLLLLNC  168 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~~~~~~~----~~~~~~tv  168 (229)
                      +|+++||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.+...  ...+..+.+.+    ..+..+++
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv  112 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence            8999999999999999999999999999999999999   99997 788765321  11122233322    22233688


Q ss_pred             HHHHHcc
Q 027060          169 LKNLRNQ  175 (229)
Q Consensus       169 ~e~l~~~  175 (229)
                      .+|+.+.
T Consensus       113 ~e~l~~~  119 (236)
T cd03267         113 IDSFYLL  119 (236)
T ss_pred             HHHHHHH
Confidence            8887653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.2e-20  Score=180.98  Aligned_cols=98  Identities=13%  Similarity=0.193  Sum_probs=73.7

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH------
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP------  147 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~------  147 (229)
                      +++|+++|+++.|+.......+|+||||+|.+||++||+|+||||||||+|+|+|+++   |++|. .++|.++      
T Consensus        10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~   86 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ   86 (623)
T ss_pred             CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence            4589999999999742112348999999999999999999999999999999999999   99997 6666311      


Q ss_pred             ---------HHH-H-hhcCCCcccCcc-----hhhhHHHHHHcc
Q 027060          148 ---------KEA-H-ARRGAPWTFNPL-----LLLNCLKNLRNQ  175 (229)
Q Consensus       148 ---------~~~-~-~~~~~~~~~~~~-----~~~tv~e~l~~~  175 (229)
                               ... . +...+++.+|.+     +.+|+.+|+.++
T Consensus        87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~  130 (623)
T PRK10261         87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAES  130 (623)
T ss_pred             ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHH
Confidence                     111 1 122456666653     237999998764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.4e-20  Score=177.28  Aligned_cols=61  Identities=20%  Similarity=0.297  Sum_probs=56.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      +|+++|+++.|++..    +|+++||+|.+||+++|+||||||||||+|+|+|+++   |++|. .++|
T Consensus         1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~   62 (530)
T PRK15064          1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDP   62 (530)
T ss_pred             CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC
Confidence            489999999998754    8999999999999999999999999999999999999   99997 6665

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.82  E-value=7.8e-21  Score=177.47  Aligned_cols=89  Identities=19%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHhhc
Q 027060           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHARR  154 (229)
Q Consensus        80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~~~  154 (229)
                      ++|+++.|++..    +|+|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|+++..    ...+.
T Consensus         1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~   73 (491)
T PRK10982          1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN   73 (491)
T ss_pred             CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence            468999998654    8999999999999999999999999999999999999   99997 888875421    11233


Q ss_pred             CCCcccCcc---hhhhHHHHHHcc
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      .+.+.+|..   ..+|+.+|+.++
T Consensus        74 ~i~~v~q~~~~~~~~tv~~~l~~~   97 (491)
T PRK10982         74 GISMVHQELNLVLQRSVMDNMWLG   97 (491)
T ss_pred             CEEEEecccccccCCCHHHHhhcc
Confidence            444444443   337999999864

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.82  E-value=2.4e-20  Score=181.19  Aligned_cols=145  Identities=20%  Similarity=0.175  Sum_probs=101.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++...  .+|+|+||+|++||.++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       477 ~I~~~~vsf~y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  551 (710)
T TIGR03796       477 YVELRNITFGYSPLEP--PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL  551 (710)
T ss_pred             eEEEEEEEEecCCCCC--CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence            5999999999985321  27999999999999999999999999999999999999   99997 999987643   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.+|.+.+  .|++||+.++..-.                                ....+.|+.|++..++++.
T Consensus       552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall  631 (710)
T TIGR03796       552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV  631 (710)
T ss_pred             HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence            3445555555543  78999998753210                                0012233444444445555


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      .+++++++||++--||..+.+++.+.+.
T Consensus       632 ~~p~iliLDEptS~LD~~te~~i~~~l~  659 (710)
T TIGR03796       632 RNPSILILDEATSALDPETEKIIDDNLR  659 (710)
T ss_pred             hCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            5555555555555555556777776654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.82  E-value=5.4e-21  Score=161.53  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=57.9

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      +.++++++.|++..    +|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|++.
T Consensus        23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~   86 (224)
T cd03220          23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVS   86 (224)
T ss_pred             hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEc
Confidence            77889999998865    8999999999999999999999999999999999999   99997 8888654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.82  E-value=2.2e-20  Score=176.83  Aligned_cols=85  Identities=13%  Similarity=0.026  Sum_probs=67.3

Q ss_pred             CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR  153 (229)
Q Consensus        76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~  153 (229)
                      .+|+++||++.|+ +..    +|+|+||+|.+|++++|+|+|||||||||++|+|+++   |++|. .+++.        
T Consensus         3 ~~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~--------   67 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG--------   67 (552)
T ss_pred             EEEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC--------
Confidence            3799999999997 443    8999999999999999999999999999999999999   99997 55432        


Q ss_pred             cCCCcccCcc---hhhhHHHHHHcc
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ..+++.+|.+   ..+|+.+|+.++
T Consensus        68 ~~i~~v~Q~~~~~~~~tv~e~i~~~   92 (552)
T TIGR03719        68 IKVGYLPQEPQLDPTKTVRENVEEG   92 (552)
T ss_pred             CEEEEEeccCCCCCCCcHHHHHHHh
Confidence            1233333332   336888887653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.6e-20  Score=159.61  Aligned_cols=94  Identities=16%  Similarity=0.155  Sum_probs=69.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc-c-CCCCce-EecCCCHHHH----
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKAS-SFDSQDPKEA----  150 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~-~-~p~~G~-~~~g~~~~~~----  150 (229)
                      -+++||++.|++..    +|+++||+|.+||+++|+|+||||||||+++|+|++.. . .|++|. .++|.++...    
T Consensus         6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   81 (251)
T PRK14244          6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV   81 (251)
T ss_pred             EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence            46899999998654    89999999999999999999999999999999999741 0 136897 8888765321    


Q ss_pred             -HhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          151 -HARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       151 -~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                       ..+..+.+.+|...+  .++.+|+.+.
T Consensus        82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~  109 (251)
T PRK14244         82 VLLRAKVGMVFQKPNPFPKSIYDNVAYG  109 (251)
T ss_pred             HHHhhhEEEEecCcccccCCHHHHHHHH
Confidence             123334444444321  4888888754

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.82  E-value=3.7e-20  Score=174.19  Aligned_cols=146  Identities=18%  Similarity=0.193  Sum_probs=100.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++...  .+|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       320 ~i~~~~v~f~y~~~~~--~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l  394 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRA--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW  394 (529)
T ss_pred             eEEEEEEEEECCCCCc--ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence            5999999999976321  27999999999999999999999999999999999999   99997 889986532   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.+|.+.+  .|+.||+.++.....                                ...+.++.+|...++++.
T Consensus       395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~  474 (529)
T TIGR02857       395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL  474 (529)
T ss_pred             HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence            3334444554433  799999987532110                                011223344444444444


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++||++-.||..+.+++.+.+..
T Consensus       475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~  503 (529)
T TIGR02857       475 RDAPLLLLDEPTAHLDAETEALVTEALRA  503 (529)
T ss_pred             cCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence            55555555555555555567777776654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.82  E-value=3.4e-20  Score=180.11  Aligned_cols=144  Identities=17%  Similarity=0.109  Sum_probs=99.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++..   .+|+|+||+|++|+.++|+|+||||||||+++|+|++.   |++|. .++|.++..   ...
T Consensus       473 ~I~~~~vsf~y~~~~---~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  546 (708)
T TIGR01193       473 DIVINDVSYSYGYGS---NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL  546 (708)
T ss_pred             cEEEEEEEEEcCCCC---cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence            499999999997421   27999999999999999999999999999999999999   99997 999987543   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccC---------------------------------CCCCCCCCCchhhhhhc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      +..+.+.+|.+.+  .|++||+.++.....                                 ...+.++.+++..++++
T Consensus       547 r~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal  626 (708)
T TIGR01193       547 RQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL  626 (708)
T ss_pred             HHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH
Confidence            3344455555433  799999998621100                                 01122334444444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      ..++++|++||++--||..+.+.+.+.+.
T Consensus       627 l~~p~iliLDE~Ts~LD~~te~~i~~~L~  655 (708)
T TIGR01193       627 LTDSKVLILDESTSNLDTITEKKIVNNLL  655 (708)
T ss_pred             hhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            45555555555555555556677766554

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.82  E-value=2.8e-20  Score=180.13  Aligned_cols=95  Identities=22%  Similarity=0.275  Sum_probs=76.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++...  .+|+|+||+|++||+++|+|+||||||||+|+|+|++.   |++|. .++|.++..   ...
T Consensus       451 ~I~~~nvsf~Y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  525 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV  525 (686)
T ss_pred             eEEEEEEEEEcCCCCc--cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence            5999999999964321  27999999999999999999999999999999999999   99997 899986432   223


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.+  -|++||+.++.
T Consensus       526 r~~i~~v~Q~~~lf~gTI~eNi~~~~  551 (686)
T TIGR03797       526 RRQLGVVLQNGRLMSGSIFENIAGGA  551 (686)
T ss_pred             HhccEEEccCCccCcccHHHHHhcCC
Confidence            4445555555543  68999998864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=2.7e-20  Score=150.80  Aligned_cols=145  Identities=17%  Similarity=0.258  Sum_probs=111.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC-------
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD-------  146 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~-------  146 (229)
                      ++.|+++|+.|+||...    +|++||++-++|+++.|||-+|||||||||||+-+.+   |..|. .++|+.       
T Consensus         4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~   76 (256)
T COG4598           4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK   76 (256)
T ss_pred             ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence            35699999999999876    8999999999999999999999999999999999999   99996 777762       


Q ss_pred             --------HHH-HHhhcCCCcccCcchh---hhHHHHHHcccc----------------------------ccCCCCCCC
Q 027060          147 --------PKE-AHARRGAPWTFNPLLL---LNCLKNLRNQGS----------------------------VYAPSFDHG  186 (229)
Q Consensus       147 --------~~~-~~~~~~~~~~~~~~~~---~tv~e~l~~~~~----------------------------~~~~~~~~~  186 (229)
                              ... .+.|....++||.+++   +|++||+.....                            .|-...+.+
T Consensus        77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG  156 (256)
T COG4598          77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG  156 (256)
T ss_pred             CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence                    111 2233445666666654   899999985311                            011123467


Q ss_pred             CCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       187 ~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      +.++...+.++...++++++|+|+..||+.-.-++.+.++
T Consensus       157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~  196 (256)
T COG4598         157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ  196 (256)
T ss_pred             HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHH
Confidence            7788888888888888888888888888875555555443

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.82  E-value=2.8e-20  Score=174.92  Aligned_cols=59  Identities=19%  Similarity=0.366  Sum_probs=53.5

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-Eec
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFD  143 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~  143 (229)
                      |+++|+++.|+++.    +|+++||+|.+|++++|+||||||||||+|+|+|++  +   |++|. .++
T Consensus         1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~   62 (520)
T TIGR03269         1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYH   62 (520)
T ss_pred             CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEe
Confidence            57899999998654    899999999999999999999999999999999996  7   89997 664

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.81  E-value=3e-20  Score=178.30  Aligned_cols=98  Identities=16%  Similarity=0.254  Sum_probs=74.6

Q ss_pred             CCeEEEeeeeEEcCccc-------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~-------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .++|+++||++.|+...       ....+|+++||+|.+||++||+|+||||||||+|+|+|+++   |++|. .++|.+
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~  387 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR  387 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence            46899999999996210       01237999999999999999999999999999999999999   99997 888875


Q ss_pred             HHH-----H-HhhcCCCcccCcc-----hhhhHHHHHHcc
Q 027060          147 PKE-----A-HARRGAPWTFNPL-----LLLNCLKNLRNQ  175 (229)
Q Consensus       147 ~~~-----~-~~~~~~~~~~~~~-----~~~tv~e~l~~~  175 (229)
                      +..     . ..+..+.+.||.+     +.+++.+|+.+.
T Consensus       388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~  427 (623)
T PRK10261        388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEP  427 (623)
T ss_pred             CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHH
Confidence            321     1 1233455666653     237888888653

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.81  E-value=5.1e-20  Score=175.00  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++...  .+|+|+||+|++|+.++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       341 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~  415 (582)
T PRK11176        341 DIEFRNVTFTYPGKEV--PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL  415 (582)
T ss_pred             eEEEEEEEEecCCCCC--ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence            5999999999975321  27999999999999999999999999999999999999   99997 899986532   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      +..+.+.+|.+.+  .|+++|+.++
T Consensus       416 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~  440 (582)
T PRK11176        416 RNQVALVSQNVHLFNDTIANNIAYA  440 (582)
T ss_pred             HhhceEEccCceeecchHHHHHhcC
Confidence            3335555555443  7899999985

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.81  E-value=5.6e-20  Score=178.24  Aligned_cols=146  Identities=18%  Similarity=0.177  Sum_probs=103.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++...  .+|+|+||+|++||.++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       463 ~I~~~~vsf~Y~~~~~--~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l  537 (694)
T TIGR03375       463 EIEFRNVSFAYPGQET--PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL  537 (694)
T ss_pred             eEEEEEEEEEeCCCCc--cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence            5999999999975321  27999999999999999999999999999999999999   99997 899987543   223


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcccccc--------------------CC------------CCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------AP------------SFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------~~------------~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.+|.+.+  .|++||+.++..-.                    .|            ..+.|+.++...++++.
T Consensus       538 r~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall  617 (694)
T TIGR03375       538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL  617 (694)
T ss_pred             HhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence            4445566666544  69999999864310                    00            12233444444445555


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++||++-.||..+.+++.+.+..
T Consensus       618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~  646 (694)
T TIGR03375       618 RDPPILLLDEPTSAMDNRSEERFKDRLKR  646 (694)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            55555555555555555567777776653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.81  E-value=4.2e-20  Score=173.30  Aligned_cols=91  Identities=15%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      ++|+++|+++.|+  .    +|+|+||+|.+||+++|+||||||||||+|+|+|+++   |++|. .++|+++..    .
T Consensus       264 ~~l~~~~l~~~~~--~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~  334 (510)
T PRK09700        264 TVFEVRNVTSRDR--K----KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD  334 (510)
T ss_pred             cEEEEeCccccCC--C----cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence            4799999998764  2    7999999999999999999999999999999999999   99997 888865321    1


Q ss_pred             HhhcCCCcccCc------chhhhHHHHHHcc
Q 027060          151 HARRGAPWTFNP------LLLLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~------~~~~tv~e~l~~~  175 (229)
                      ..+.++.+.+|.      +..+++.+|+.++
T Consensus       335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~  365 (510)
T PRK09700        335 AVKKGMAYITESRRDNGFFPNFSIAQNMAIS  365 (510)
T ss_pred             HHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence            122345555543      2237899998764

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.81  E-value=4.3e-20  Score=155.66  Aligned_cols=127  Identities=16%  Similarity=0.220  Sum_probs=92.3

Q ss_pred             cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcchhhhHHH
Q 027060           92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLLLLNCLK  170 (229)
Q Consensus        92 ~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e  170 (229)
                      ..+++|+||||++.+||.+||||+||||||||+|+|+|.++   |++|. .+.|+-...  ...+.++.++    +|.+|
T Consensus        38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~l--i~lg~Gf~pe----lTGre  108 (249)
T COG1134          38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPL--IELGAGFDPE----LTGRE  108 (249)
T ss_pred             ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehh--hhcccCCCcc----cchHH
Confidence            34679999999999999999999999999999999999999   99997 777753211  1123333322    45566


Q ss_pred             HHHcccc-------------------------ccC--CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHH
Q 027060          171 NLRNQGS-------------------------VYA--PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  223 (229)
Q Consensus       171 ~l~~~~~-------------------------~~~--~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~  223 (229)
                      |+.+...                         +..  ..|+.++.-|++-.++....+++|++|+.+..-|+-.+++..+
T Consensus       109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~  188 (249)
T COG1134         109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE  188 (249)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence            6554322                         222  2466777778777777777888888888888888876666665


Q ss_pred             HHhh
Q 027060          224 MFDE  227 (229)
Q Consensus       224 ~l~~  227 (229)
                      .+.+
T Consensus       189 rl~e  192 (249)
T COG1134         189 RLNE  192 (249)
T ss_pred             HHHH
Confidence            5544

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=8e-20  Score=158.88  Aligned_cols=146  Identities=18%  Similarity=0.242  Sum_probs=103.5

Q ss_pred             CCeEEEeeeeEEcCccc--------------------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 027060           75 IPVVEARCMDEVYDALA--------------------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI  134 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~--------------------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~  134 (229)
                      +..|+++||+|-||...                    .-+.-++|+||+|++|||+.|+|-+|||||||+|+|+++++  
T Consensus         2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--   79 (386)
T COG4175           2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--   79 (386)
T ss_pred             CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence            45689999999997631                    12345789999999999999999999999999999999999  


Q ss_pred             CCCCce-EecCCCHH-----H--HHhhcCCCcccCcc---hhhhHHHHHHccccccCC----------------------
Q 027060          135 WPQKAS-SFDSQDPK-----E--AHARRGAPWTFNPL---LLLNCLKNLRNQGSVYAP----------------------  181 (229)
Q Consensus       135 ~p~~G~-~~~g~~~~-----~--~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~----------------------  181 (229)
                       |++|+ .++|.++.     .  ..++..+.++||.+   ++.||++|+.|+..+..-                      
T Consensus        80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~  158 (386)
T COG4175          80 -PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA  158 (386)
T ss_pred             -CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh
Confidence             99997 89998742     1  23344566666665   458999999998765421                      


Q ss_pred             -----CCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHH
Q 027060          182 -----SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  223 (229)
Q Consensus       182 -----~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~  223 (229)
                           ..+.++.|++..+.++...+.||++|++|.-||+=-+.++.+
T Consensus       159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQd  205 (386)
T COG4175         159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQD  205 (386)
T ss_pred             hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHH
Confidence                 223445555555555555555555555555555544544443

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.81  E-value=6.3e-20  Score=178.43  Aligned_cols=96  Identities=20%  Similarity=0.199  Sum_probs=77.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++.. ...+|+|+||+|++||+++|+||||||||||+++|.|+++   |++|. .++|.++.+   ...
T Consensus       478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l  553 (711)
T TIGR00958       478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL  553 (711)
T ss_pred             eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence            599999999997532 1237999999999999999999999999999999999999   99997 899987643   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.+  .|++||+.++.
T Consensus       554 r~~i~~v~Q~~~lF~gTIreNI~~g~  579 (711)
T TIGR00958       554 HRQVALVGQEPVLFSGSVRENIAYGL  579 (711)
T ss_pred             HhhceEEecCccccccCHHHHHhcCC
Confidence            3345555555443  78999999864

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.81  E-value=2.8e-20  Score=194.42  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=102.3

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--H
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--A  150 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~  150 (229)
                      ...+|+++||+|.|++.  ...+|+|+||+|++||++||+|+||||||||+|+|+|+++   |++|. .++|+++..  .
T Consensus      1934 ~~~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257      1934 KTDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred             CCceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHH
Confidence            34589999999999852  1238999999999999999999999999999999999999   99997 888876521  1


Q ss_pred             HhhcCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      ..+..+++.+|.   ...+|+.|++.+...++.                           ..++.|+++++..++++..+
T Consensus      2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257      2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred             HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            122234444443   334899999976433221                           11223344444444445555


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|||+..||...++.+.+++..
T Consensus      2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257      2089 PPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            555555555555555567777777654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.81  E-value=1.2e-19  Score=158.07  Aligned_cols=144  Identities=19%  Similarity=0.220  Sum_probs=93.9

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~  153 (229)
                      |+++|+++.|.+...  .+|+|+||+|++||+++|+|+||||||||+++|+|+++    .+|. .++|.++..   ...+
T Consensus         3 i~~~nls~~~~~~~~--~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~----~~G~I~i~g~~i~~~~~~~lr   76 (275)
T cd03289           3 MTVKDLTAKYTEGGN--AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQKWR   76 (275)
T ss_pred             EEEEEEEEEeCCCCC--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEhhhCCHHHHh
Confidence            789999999953211  27999999999999999999999999999999999986    4686 888876532   1222


Q ss_pred             cCCCcccCcchh--hhHHHHHHcccccc-------------------CC------------CCCCCCCCchhhhhhccCC
Q 027060          154 RGAPWTFNPLLL--LNCLKNLRNQGSVY-------------------AP------------SFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------------~~------------~~~~~~~~~~~~~l~~~~~  200 (229)
                      ..+.+.+|.+.+  .|+++|+.......                   .+            .++.++.+++..+.++..+
T Consensus        77 ~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~  156 (275)
T cd03289          77 KAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK  156 (275)
T ss_pred             hhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            334444443322  58889985321110                   00            0233344444444455555


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++++|+++..||.-..+.+.+.+..
T Consensus       157 p~illlDEpts~LD~~~~~~l~~~l~~  183 (275)
T cd03289         157 AKILLLDEPSAHLDPITYQVIRKTLKQ  183 (275)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHH
Confidence            555555555555555567777776653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=5.7e-20  Score=163.84  Aligned_cols=98  Identities=17%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH---
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE---  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~---  149 (229)
                      .+|+++|+++.|.+..  ..+|+|+||+|.+||++||+|+||||||||+++|+|+....  .|++|. .++|.++..   
T Consensus        79 ~~i~~~nls~~y~~~~--~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         79 NVFEIRNFNFWYMNRT--KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             ceEEEEeeEEEecCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            4799999999996421  12799999999999999999999999999999999998510  146896 889987531   


Q ss_pred             --HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060          150 --AHARRGAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       150 --~~~~~~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                        ...+..+.+.+|.+.  ..|+++|+.++
T Consensus       157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~  186 (329)
T PRK14257        157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYG  186 (329)
T ss_pred             chHhhhccEEEEecCCccCCCcHHHHHHhH
Confidence              122334444444432  27899999864

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.4e-19  Score=164.97  Aligned_cols=94  Identities=21%  Similarity=0.214  Sum_probs=77.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---Hh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---HA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---~~  152 (229)
                      .|+++||++.|+++.   .+|+++||+|++||.+||+|+|||||||++|+|.++..    .+|. +++|+++...   ..
T Consensus       351 ~I~F~dV~f~y~~k~---~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~~~Sl  423 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKR---KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVSLESL  423 (591)
T ss_pred             cEEEEeeEEEeCCCC---ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc----cCCcEEECCeeHhhhChHHh
Confidence            499999999999764   27899999999999999999999999999999999986    7886 9999986542   23


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGS  177 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~  177 (229)
                      |.-++.++|+..+  .|++.|+.++..
T Consensus       424 R~~Ig~VPQd~~LFndTIl~NI~YGn~  450 (591)
T KOG0057|consen  424 RQSIGVVPQDSVLFNDTILYNIKYGNP  450 (591)
T ss_pred             hhheeEeCCcccccchhHHHHhhcCCC
Confidence            3445566665543  799999998743

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.81  E-value=8.8e-20  Score=173.86  Aligned_cols=94  Identities=19%  Similarity=0.219  Sum_probs=75.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      -|+++|+++.|++..   .+|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       340 ~i~~~~v~f~y~~~~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l  413 (592)
T PRK10790        340 RIDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL  413 (592)
T ss_pred             eEEEEEEEEEeCCCC---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence            499999999997521   27999999999999999999999999999999999999   99997 899986542   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.+  -|+++|+.++.
T Consensus       414 ~~~i~~v~Q~~~lF~~Ti~~NI~~~~  439 (592)
T PRK10790        414 RQGVAMVQQDPVVLADTFLANVTLGR  439 (592)
T ss_pred             HhheEEEccCCccccchHHHHHHhCC
Confidence            3334444444433  68999998864

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.80  E-value=8.7e-20  Score=171.91  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=71.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~  148 (229)
                      .++|+++|+++.|++......+|+++||+|.+||++||+||||||||||+|+|+|+++   |     ++|. .++|.++.
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~   79 (529)
T PRK15134          3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLL   79 (529)
T ss_pred             CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEecc
Confidence            3579999999999741111238999999999999999999999999999999999998   6     6897 88887642


Q ss_pred             H-----H--HhhcCCCcccCcc-----hhhhHHHHHHc
Q 027060          149 E-----A--HARRGAPWTFNPL-----LLLNCLKNLRN  174 (229)
Q Consensus       149 ~-----~--~~~~~~~~~~~~~-----~~~tv~e~l~~  174 (229)
                      .     .  .++..+++.+|..     ..+++.+++.+
T Consensus        80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~  117 (529)
T PRK15134         80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE  117 (529)
T ss_pred             cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence            1     1  1123455555543     23577777653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=5.9e-20  Score=172.18  Aligned_cols=97  Identities=15%  Similarity=0.172  Sum_probs=72.7

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecCCCHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQDPK----  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g~~~~----  148 (229)
                      .++|+++|+++.|+... ...+|+|+||+|++||+++|+|+||||||||+|+|+|+++   | ++|. .++|+++.    
T Consensus       257 ~~~l~~~~l~~~~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~  332 (506)
T PRK13549        257 EVILEVRNLTAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNP  332 (506)
T ss_pred             CceEEEecCcccccccc-ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCH
Confidence            34799999999994210 1127999999999999999999999999999999999987   6 8997 78886532    


Q ss_pred             HHHhhcCCCcccCcc------hhhhHHHHHHcc
Q 027060          149 EAHARRGAPWTFNPL------LLLNCLKNLRNQ  175 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~------~~~tv~e~l~~~  175 (229)
                      ....+.++.+.+|..      ..+++.+|+.++
T Consensus       333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~  365 (506)
T PRK13549        333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA  365 (506)
T ss_pred             HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence            112234455555542      237899988754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.80  E-value=8.6e-20  Score=173.56  Aligned_cols=95  Identities=22%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++...  .+|+|+||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       338 ~i~~~~v~f~y~~~~~--~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~  412 (574)
T PRK11160        338 SLTLNNVSFTYPDQPQ--PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAAL  412 (574)
T ss_pred             eEEEEEEEEECCCCCC--cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence            5999999999975321  27999999999999999999999999999999999999   99997 889886532   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.+  .|+.||+.++.
T Consensus       413 r~~i~~v~Q~~~lf~~ti~~Ni~~~~  438 (574)
T PRK11160        413 RQAISVVSQRVHLFSATLRDNLLLAA  438 (574)
T ss_pred             HhheeEEcccchhhcccHHHHhhcCC
Confidence            3334445555433  68999998753

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=5.6e-20  Score=149.48  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=75.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh--h
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA--R  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~--~  153 (229)
                      +++.+|++..-++..    +|.++||++.+||++-|.||||||||||||+|+|++.   |++|+ .+.|..+...+.  .
T Consensus         2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~   74 (209)
T COG4133           2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH   74 (209)
T ss_pred             cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence            477888988887765    8999999999999999999999999999999999999   99997 888775433221  1


Q ss_pred             cC---CCcccCcchhhhHHHHHHccccccC
Q 027060          154 RG---APWTFNPLLLLNCLKNLRNQGSVYA  180 (229)
Q Consensus       154 ~~---~~~~~~~~~~~tv~e~l~~~~~~~~  180 (229)
                      ..   ++-..-....+|++||+.|...++.
T Consensus        75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~  104 (209)
T COG4133          75 QALLYLGHQPGIKTELTALENLHFWQRFHG  104 (209)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHhC
Confidence            11   1233333445999999999766554

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.80  E-value=7.8e-20  Score=171.86  Aligned_cols=149  Identities=20%  Similarity=0.292  Sum_probs=94.0

Q ss_pred             CCeEEEeeeeEEcCcc-ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec-CCC---HH
Q 027060           75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQD---PK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~-~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~-g~~---~~  148 (229)
                      .++|+++|+++.|++. .....+|+++||+|.+||+++|+||||||||||+|+|+|+++   |++|. .++ |.+   +.
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~  353 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT  353 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence            4589999999999531 011127999999999999999999999999999999999999   99997 664 532   11


Q ss_pred             -----H-HHhhcCCCcccCc---chhhhHHHHHHccccccCC-------------CCCCC------CCCchhhhhhccCC
Q 027060          149 -----E-AHARRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-------------SFDHG------VGDPVEDDILVGLQ  200 (229)
Q Consensus       149 -----~-~~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-------------~~~~~------~~~~~~~~l~~~~~  200 (229)
                           . ...+..+.+.+|.   +..+++.+|+.+......+             .+...      ..++....++.|++
T Consensus       354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~  433 (520)
T TIGR03269       354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER  433 (520)
T ss_pred             ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence                 0 1112233444443   2337899998753111000             00000      11333445555555


Q ss_pred             ccE-----EEecCCeeeeccc-------CHHHHHHHHh
Q 027060          201 HKV-----VIVDGNYLFLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       201 ~rv-----Li~d~~~LlLDEP-------~~~~l~~~l~  226 (229)
                      +|+     |+.+|++++||||       ..+.+.+++.
T Consensus       434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~  471 (520)
T TIGR03269       434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL  471 (520)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            554     5556666666666       4666766664

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.80  E-value=3.6e-20  Score=151.53  Aligned_cols=112  Identities=14%  Similarity=0.162  Sum_probs=89.8

Q ss_pred             eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcc
Q 027060           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWT  159 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~  159 (229)
                      .||++.|++..    ++++ +|+|++||+++|+||||||||||+|+|+|+++   |++|. .++|.+         +.+.
T Consensus         4 ~~l~~~~~~~~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~---------i~~~   66 (177)
T cd03222           4 PDCVKRYGVFF----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGIT---------PVYK   66 (177)
T ss_pred             CCeEEEECCEE----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEE---------EEEE
Confidence            58999998764    6777 49999999999999999999999999999999   99997 777642         1222


Q ss_pred             cCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       160 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|...                  ++.++.+++..+.++..+++++++|+++..||...++.+.+++..
T Consensus        67 ~q~~~------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~  116 (177)
T cd03222          67 PQYID------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR  116 (177)
T ss_pred             cccCC------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            22211                  566778888888888888888888888888888888888777754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.80  E-value=1.2e-19  Score=173.05  Aligned_cols=145  Identities=19%  Similarity=0.185  Sum_probs=99.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++..   .+|+|+||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       334 ~i~~~~v~~~y~~~~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  407 (585)
T TIGR01192       334 AVEFRHITFEFANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL  407 (585)
T ss_pred             eEEEEEEEEECCCCC---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence            599999999997532   27999999999999999999999999999999999999   99997 888876432   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcccccc--------------------CC------------CCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------AP------------SFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------~~------------~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.+|.+.+  .|++||+.++....                    .+            ..+.++.+++..++++.
T Consensus       408 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall  487 (585)
T TIGR01192       408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL  487 (585)
T ss_pred             HhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence            2334444444332  78999998753210                    00            11223344444444555


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++||++..||..+++.+.+.+..
T Consensus       488 ~~p~ililDEpts~LD~~~~~~i~~~l~~  516 (585)
T TIGR01192       488 KNAPILVLDEATSALDVETEARVKNAIDA  516 (585)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            55555666666666666567777776653

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.80  E-value=1.1e-19  Score=173.09  Aligned_cols=93  Identities=28%  Similarity=0.328  Sum_probs=75.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++..   .+|+|+||++++|++++|+|+||||||||+++|+|+++   |.+|. .++|.++..   ...
T Consensus       334 ~I~~~~vsf~y~~~~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~  407 (588)
T PRK13657        334 AVEFDDVSFSYDNSR---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL  407 (588)
T ss_pred             eEEEEEEEEEeCCCC---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence            599999999997531   27999999999999999999999999999999999999   99997 899876532   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      +..+.+.+|.+.+  .|++||+.++
T Consensus       408 r~~i~~v~Q~~~lf~~Ti~~Ni~~~  432 (588)
T PRK13657        408 RRNIAVVFQDAGLFNRSIEDNIRVG  432 (588)
T ss_pred             HhheEEEecCcccccccHHHHHhcC
Confidence            3335555555543  6899999986

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.80  E-value=7.5e-20  Score=173.38  Aligned_cols=86  Identities=20%  Similarity=0.268  Sum_probs=68.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR  153 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~  153 (229)
                      .++|+++||++.|+++.    +|+|+||+|.+||++||+|+||||||||+++|+|+++   |++|. .+ +.+.     +
T Consensus       322 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~-~~~~-----~  388 (556)
T PRK11819        322 DKVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKI-GETV-----K  388 (556)
T ss_pred             CeEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE-CCce-----E
Confidence            35899999999998754    8999999999999999999999999999999999999   99997 55 4321     2


Q ss_pred             cCCCcccCc----chhhhHHHHHHcc
Q 027060          154 RGAPWTFNP----LLLLNCLKNLRNQ  175 (229)
Q Consensus       154 ~~~~~~~~~----~~~~tv~e~l~~~  175 (229)
                      ++  +.+|.    +..+|+.+|+.++
T Consensus       389 i~--~v~q~~~~~~~~~tv~e~l~~~  412 (556)
T PRK11819        389 LA--YVDQSRDALDPNKTVWEEISGG  412 (556)
T ss_pred             EE--EEeCchhhcCCCCCHHHHHHhh
Confidence            23  33332    2236888888764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.80  E-value=8.3e-20  Score=172.94  Aligned_cols=86  Identities=20%  Similarity=0.254  Sum_probs=68.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR  153 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~  153 (229)
                      .++|+++|+++.|++..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .+ +.+.     .
T Consensus       320 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~-~~~~-----~  386 (552)
T TIGR03719       320 DKVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKI-GETV-----K  386 (552)
T ss_pred             CeEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEE-CCce-----E
Confidence            45899999999998754    8999999999999999999999999999999999999   99997 55 4322     2


Q ss_pred             cCCCcccCc----chhhhHHHHHHcc
Q 027060          154 RGAPWTFNP----LLLLNCLKNLRNQ  175 (229)
Q Consensus       154 ~~~~~~~~~----~~~~tv~e~l~~~  175 (229)
                      ++  +.+|.    +..+|+.+|+.++
T Consensus       387 i~--~v~q~~~~~~~~~tv~e~l~~~  410 (552)
T TIGR03719       387 LA--YVDQSRDALDPNKTVWEEISGG  410 (552)
T ss_pred             EE--EEeCCccccCCCCcHHHHHHhh
Confidence            23  33332    2236888888764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.80  E-value=3.5e-19  Score=142.19  Aligned_cols=144  Identities=19%  Similarity=0.208  Sum_probs=110.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH--------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP--------  147 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~--------  147 (229)
                      .|+++++++.||...    +|.||+|+-+.||.+.++||+|+|||||+|.|+-+.-   |.+|. .+.|...        
T Consensus         2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~   74 (242)
T COG4161           2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence            389999999999876    8899999999999999999999999999999999988   99998 6766521        


Q ss_pred             -HHHHhhcCCCcccCcch---hhhHHHHHHcccc-cc---------------------------CCCCCCCCCCchhhhh
Q 027060          148 -KEAHARRGAPWTFNPLL---LLNCLKNLRNQGS-VY---------------------------APSFDHGVGDPVEDDI  195 (229)
Q Consensus       148 -~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~-~~---------------------------~~~~~~~~~~~~~~~l  195 (229)
                       .....|..++++||.+.   .+||.+|+..... ..                           --..+.++.++++.+.
T Consensus        75 k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiar  154 (242)
T COG4161          75 KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIAR  154 (242)
T ss_pred             HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHH
Confidence             11223444555665554   4899999975311 00                           0123456778888888


Q ss_pred             hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++.+++.+|++|++...||+.-..++.+++.+
T Consensus       155 almmkpqvllfdeptaaldpeitaqvv~iike  186 (242)
T COG4161         155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIKE  186 (242)
T ss_pred             HHhcCCcEEeecCcccccCHHHHHHHHHHHHH
Confidence            88888888888888888888878888888765

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.80  E-value=8.6e-20  Score=170.75  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=71.3

Q ss_pred             CeEEEeeeeEEcC---ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecCCCHH--
Q 027060           76 PVVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQDPK--  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~---~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g~~~~--  148 (229)
                      ++|+++|+++.|+   +..    +|+++||+|.+||+++|+||||||||||+|+|+|+++   | ++|. .++|+++.  
T Consensus       256 ~~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~  328 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIR  328 (500)
T ss_pred             ceEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCC
Confidence            4799999999994   222    7999999999999999999999999999999999998   7 7997 88886542  


Q ss_pred             --HHHhhcCCCcccCcc------hhhhHHHHHHcc
Q 027060          149 --EAHARRGAPWTFNPL------LLLNCLKNLRNQ  175 (229)
Q Consensus       149 --~~~~~~~~~~~~~~~------~~~tv~e~l~~~  175 (229)
                        ....+..+.+.+|..      +.+|+.+|+.++
T Consensus       329 ~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~  363 (500)
T TIGR02633       329 NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS  363 (500)
T ss_pred             CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcch
Confidence              112233454544442      236888888663

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.80  E-value=1.1e-19  Score=155.32  Aligned_cols=68  Identities=21%  Similarity=0.367  Sum_probs=57.7

Q ss_pred             eEEEeeeeEEcCc-----------------cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           77 VVEARCMDEVYDA-----------------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        77 ~i~~~~ls~~y~~-----------------~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +|.++|++|.|.-                 +...+.++.||||+|++|+++|++|+|||||||++|+|+|++.   |++|
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G   79 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSG   79 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCC
Confidence            5777888777731                 1123558899999999999999999999999999999999999   9999


Q ss_pred             e-EecCCCH
Q 027060          140 S-SFDSQDP  147 (229)
Q Consensus       140 ~-~~~g~~~  147 (229)
                      . .+.|.++
T Consensus        80 ~v~V~G~~P   88 (325)
T COG4586          80 KVRVNGKDP   88 (325)
T ss_pred             eEEecCcCc
Confidence            7 9999865

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.80  E-value=3.8e-20  Score=156.90  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=81.4

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC-CcccCcchhhhHHHHHHc
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA-PWTFNPLLLLNCLKNLRN  174 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~-~~~~~~~~~~tv~e~l~~  174 (229)
                      |+++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|+++.......++ ++.+..+..+++.+|+.+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~   77 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL   77 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence            469999999999999999999999999999999999   99997 8888754321111232 333222333788898876


Q ss_pred             cccc--c-C--------------------------CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHH
Q 027060          175 QGSV--Y-A--------------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  225 (229)
Q Consensus       175 ~~~~--~-~--------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l  225 (229)
                      +...  . .                          ..++.++.+++..+.++..++++|++|+|+..||...++.+.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  157 (230)
T TIGR01184        78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL  157 (230)
T ss_pred             HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            4210  0 0                          011123333444444444455555555555555555677777776


Q ss_pred             hh
Q 027060          226 DE  227 (229)
Q Consensus       226 ~~  227 (229)
                      ..
T Consensus       158 ~~  159 (230)
T TIGR01184       158 MQ  159 (230)
T ss_pred             HH
Confidence            53

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.80  E-value=2.6e-19  Score=169.70  Aligned_cols=146  Identities=20%  Similarity=0.216  Sum_probs=100.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      -|+++||+++|++...  .+|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       330 ~i~~~~v~f~y~~~~~--~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~  404 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDR--PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL  404 (571)
T ss_pred             eEEEEEEEEEcCCCCC--ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence            4999999999975321  27999999999999999999999999999999999999   99997 889876542   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcccc--cc-------------------CC------------CCCCCCCCchhhhhhc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGS--VY-------------------AP------------SFDHGVGDPVEDDILV  197 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~--~~-------------------~~------------~~~~~~~~~~~~~l~~  197 (229)
                      +..+.+.+|.+.+  .|+++|+.++..  ..                   .|            ..+.|+.+|...++++
T Consensus       405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal  484 (571)
T TIGR02203       405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL  484 (571)
T ss_pred             HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence            3345555555543  689999987632  10                   00            1122333444444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+++++++||++.-||+.+.+.+.+.+..
T Consensus       485 l~~~~illLDEpts~LD~~~~~~i~~~L~~  514 (571)
T TIGR02203       485 LKDAPILILDEATSALDNESERLVQAALER  514 (571)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            445555555555555555567777766543

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.80  E-value=2.3e-19  Score=170.21  Aligned_cols=96  Identities=27%  Similarity=0.332  Sum_probs=76.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++... ..+|+|+||+|++||+++|+|+||||||||+++|+|+++   |.+|. .++|.++..   ...
T Consensus       337 ~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~~  412 (576)
T TIGR02204       337 EIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAEL  412 (576)
T ss_pred             eEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence            5999999999975211 127999999999999999999999999999999999999   99997 889876532   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.+  .|++||+.++.
T Consensus       413 ~~~i~~~~Q~~~lf~~Ti~~Ni~~~~  438 (576)
T TIGR02204       413 RARMALVPQDPVLFAASVMENIRYGR  438 (576)
T ss_pred             HHhceEEccCCccccccHHHHHhcCC
Confidence            3345555555543  68999998753

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.79  E-value=1e-19  Score=145.33  Aligned_cols=120  Identities=20%  Similarity=0.276  Sum_probs=95.6

Q ss_pred             EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhhcC
Q 027060           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHARRG  155 (229)
Q Consensus        80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~~~  155 (229)
                      ++++++.|.+..    +++++||+|.+|++++|+|+||||||||+++|+|+++   |++|. .++|.+...   ......
T Consensus         2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~   74 (157)
T cd00267           2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR   74 (157)
T ss_pred             eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc
Confidence            678999997653    8999999999999999999999999999999999999   99997 888765321   111222


Q ss_pred             CCcccCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       156 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +.+.+|                     ++.++.+++....++...++++++|+++..||...+..+.+++..
T Consensus        75 i~~~~q---------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~  125 (157)
T cd00267          75 IGYVPQ---------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE  125 (157)
T ss_pred             eEEEee---------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            333333                     666777887777888888888999999989988888888877754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1e-19  Score=175.01  Aligned_cols=63  Identities=22%  Similarity=0.313  Sum_probs=57.6

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD  143 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~  143 (229)
                      +.++|+++||++.|++..    +|+++||+|.+|+++||+||||||||||+|+|+|+++   |++|. .+.
T Consensus       309 ~~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~  372 (638)
T PRK10636        309 PNPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLA  372 (638)
T ss_pred             CCceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEC
Confidence            456899999999998754    8999999999999999999999999999999999999   99997 554

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.79  E-value=2.1e-19  Score=174.26  Aligned_cols=146  Identities=19%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++...  .+|+|+||+|++|+.++|+|+||||||||+++|+|++.   |++|. .++|.++..   ...
T Consensus       455 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~  529 (694)
T TIGR01846       455 AITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL  529 (694)
T ss_pred             eEEEEEEEEEcCCCCc--cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence            5999999999964321  27999999999999999999999999999999999999   99997 899987532   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcccccc--------------------C------------CCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------A------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------~------------~~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.+|...+  .|++||+.++..-.                    .            ...+.++.++...++++.
T Consensus       530 r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall  609 (694)
T TIGR01846       530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV  609 (694)
T ss_pred             HHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence            3344455555433  78999998753210                    0            011223334444444444


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++++++||++-.||..+.+++.+.+..
T Consensus       610 ~~~~ililDEpts~LD~~~~~~i~~~l~~  638 (694)
T TIGR01846       610 GNPRILIFDEATSALDYESEALIMRNMRE  638 (694)
T ss_pred             hCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            55555555555555555567777766653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.6e-19  Score=170.08  Aligned_cols=62  Identities=18%  Similarity=0.315  Sum_probs=57.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      ++|+++|+++.|++..    +|+++||+|.+|++++|+||||||||||+++|+|+++   |++|. .++|
T Consensus       318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~  380 (530)
T PRK15064        318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSE  380 (530)
T ss_pred             ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC
Confidence            4899999999998754    7999999999999999999999999999999999999   99997 6666

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.7e-19  Score=164.38  Aligned_cols=147  Identities=16%  Similarity=0.097  Sum_probs=107.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      .++++||+++|++..  ..+|+|+||++++||.++|+|++|||||||+.+|+|.+.   |++|+ .+.|.++..     .
T Consensus       336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~  410 (573)
T COG4987         336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL  410 (573)
T ss_pred             eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence            799999999998853  348999999999999999999999999999999999999   99997 889876532     2


Q ss_pred             HhhcCCCcccCcchhhhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060          151 HARRGAPWTFNPLLLLNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       151 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~  198 (229)
                      +..+++..+-.....-|+++|+.+...--                                ...++.+..+|...++.+.
T Consensus       411 ~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL  490 (573)
T COG4987         411 RETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL  490 (573)
T ss_pred             HHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH
Confidence            22333322222222368888888753210                                1123345555655555555


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      .++.++++|||+-.||..+.+++.+++.+.
T Consensus       491 ~dapl~lLDEPTegLD~~TE~~vL~ll~~~  520 (573)
T COG4987         491 HDAPLWLLDEPTEGLDPITERQVLALLFEH  520 (573)
T ss_pred             cCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence            666777777777777777899999888764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.79  E-value=1.6e-19  Score=168.62  Aligned_cols=66  Identities=21%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecCCC
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQD  146 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g~~  146 (229)
                      ..++|+++|+++.|++..    +|+++||+|.+||+++|+||||||||||+|+|+|+++   + ++|. .++|++
T Consensus       257 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~  324 (490)
T PRK10938        257 NEPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRR  324 (490)
T ss_pred             CCceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEeccc
Confidence            345899999999998654    7999999999999999999999999999999999876   5 5896 888864

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.79  E-value=2.8e-19  Score=169.67  Aligned_cols=94  Identities=20%  Similarity=0.254  Sum_probs=76.1

Q ss_pred             eEEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        77 ~i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      -|+++||++.|++ ..    +|+|+||+|++||++||+||||||||||+++|.+++.   |++|. .++|.++..   ..
T Consensus       328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~  400 (567)
T COG1132         328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS  400 (567)
T ss_pred             eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence            3999999999984 44    8999999999999999999999999999999999999   99997 888887543   22


Q ss_pred             hhcCCCcccCcchh--hhHHHHHHcccc
Q 027060          152 ARRGAPWTFNPLLL--LNCLKNLRNQGS  177 (229)
Q Consensus       152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~  177 (229)
                      .+..+..++|+..+  -|+.+|+.++..
T Consensus       401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~  428 (567)
T COG1132         401 LRKRIGIVSQDPLLFSGTIRENIALGRP  428 (567)
T ss_pred             HHHhccEEcccceeecccHHHHHhcCCC
Confidence            23334444444433  789999999853

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.79  E-value=2.5e-19  Score=170.26  Aligned_cols=145  Identities=15%  Similarity=0.196  Sum_probs=97.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++++++.|++..  ..+|+++||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       313 ~I~~~~v~~~y~~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~  387 (569)
T PRK10789        313 ELDVNIRQFTYPQTD--HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW  387 (569)
T ss_pred             cEEEEEEEEECCCCC--CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence            489999999997531  127999999999999999999999999999999999999   99997 888886532   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccC--------------------C------------CCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------P------------SFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------~------------~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+.+|.+.+  .|++||+.++.....                    |            ..+.++.+|+..++++.
T Consensus       388 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall  467 (569)
T PRK10789        388 RSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL  467 (569)
T ss_pred             HhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence            2334444444432  689999987632100                    0            01123334444444444


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      .+++++++|+++..||..+.+.+.+.+.
T Consensus       468 ~~~~illlDEpts~LD~~~~~~i~~~l~  495 (569)
T PRK10789        468 LNAEILILDDALSAVDGRTEHQILHNLR  495 (569)
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            5555555555555555556777766664

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.79  E-value=2e-19  Score=155.77  Aligned_cols=141  Identities=13%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             eEEEeeeeEEcCcc----------------ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           77 VVEARCMDEVYDAL----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        77 ~i~~~~ls~~y~~~----------------~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      -|+++||.+.|...                .....+|+++||+|.+|++++|+|+||||||||+++|+|+++   |++|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~   80 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK   80 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence            48888998888542                122347899999999999999999999999999999999999   99997


Q ss_pred             -EecCCCHHHHHhhcCCCcccCcchhhhHHHHHHccccc---------------------------cCCCCCCCCCCchh
Q 027060          141 -SFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV---------------------------YAPSFDHGVGDPVE  192 (229)
Q Consensus       141 -~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~---------------------------~~~~~~~~~~~~~~  192 (229)
                       .++|....       +.+.......+++.+|+.+....                           ....++.++.+++.
T Consensus        81 I~~~g~~~~-------~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~  153 (264)
T PRK13546         81 VDRNGEVSV-------IAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG  153 (264)
T ss_pred             EEECCEEeE-------EecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence             77764100       00011111124455555432100                           01123334445555


Q ss_pred             hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.++..++++|++|+|+..||......+.+++..
T Consensus       154 Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~  188 (264)
T PRK13546        154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE  188 (264)
T ss_pred             HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            55555556666666666666666667777776643

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.2e-19  Score=151.78  Aligned_cols=138  Identities=19%  Similarity=0.232  Sum_probs=95.5

Q ss_pred             CCeEEEeeeeEEcCcc-ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060           75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~-~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----  148 (229)
                      |.+++++||+..-.++ .    +|+++|++|++||+.+|+||||||||||.++|+|.-. --+++|. .++|+++.    
T Consensus         1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~   75 (251)
T COG0396           1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSP   75 (251)
T ss_pred             CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCH
Confidence            4579999999999884 5    8999999999999999999999999999999999642 1168897 99999853    


Q ss_pred             HHHhhcCCCcccCcchh---hhHHHHHHccccccC------C-------------CCCCCCC-CchhhhhhccCCccE--
Q 027060          149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA------P-------------SFDHGVG-DPVEDDILVGLQHKV--  203 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~------~-------------~~~~~~~-~~~~~~l~~~~~~rv--  203 (229)
                      ..+.+.|+...||.+.-   .++.+.|........      +             .++.... .-+..-++.|++.|.  
T Consensus        76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei  155 (251)
T COG0396          76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI  155 (251)
T ss_pred             hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence            45778888777777643   333443332211100      0             0111111 111223455555554  


Q ss_pred             ---EEecCCeeeecccC
Q 027060          204 ---VIVDGNYLFLDGGV  217 (229)
Q Consensus       204 ---Li~d~~~LlLDEP~  217 (229)
                         ++++|.+.+||||+
T Consensus       156 lQ~~~lePkl~ILDE~D  172 (251)
T COG0396         156 LQLLLLEPKLAILDEPD  172 (251)
T ss_pred             HHHHhcCCCEEEecCCC
Confidence               88999999999994

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.79  E-value=2.7e-19  Score=169.03  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=73.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++|++++|++...  .+|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       316 ~i~~~~v~~~y~~~~~--~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~  390 (544)
T TIGR01842       316 HLSVENVTIVPPGGKK--PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF  390 (544)
T ss_pred             eEEEEEEEEEcCCCCc--cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence            5999999999964311  27999999999999999999999999999999999999   99997 888876532   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      +..+.+.+|.+.+  .|+.||+.++
T Consensus       391 ~~~i~~v~q~~~lf~~ti~~Ni~~~  415 (544)
T TIGR01842       391 GKHIGYLPQDVELFPGTVAENIARF  415 (544)
T ss_pred             hhheEEecCCcccccccHHHHHhcc
Confidence            3344444444432  5899999754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.79  E-value=1.3e-19  Score=189.53  Aligned_cols=148  Identities=14%  Similarity=0.159  Sum_probs=101.5

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AH  151 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~  151 (229)
                      ...|+++||+|.|++..  ..+++|+||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|.++..  ..
T Consensus       926 ~~~L~I~nLsK~y~~~~--k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred             CceEEEEeEEEEecCCC--ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence            35799999999996311  128999999999999999999999999999999999999   99997 888976532  11


Q ss_pred             hhcCCCcccCc---chhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCc
Q 027060          152 ARRGAPWTFNP---LLLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQH  201 (229)
Q Consensus       152 ~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~  201 (229)
                      .+..+++.+|.   ...+|+.|++.++...+..                           .++.|+++++..+.++..++
T Consensus      1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257      1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred             HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            23334444443   3348999999875433211                           11223344444444444555


Q ss_pred             cEEEecCCeeeecccCHHHHHHHHhh
Q 027060          202 KVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       202 rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++|++|||+..||...++.+.+++..
T Consensus      1081 kVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257      1081 KVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred             CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            55555555555555567787777754

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.79  E-value=2e-19  Score=167.64  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      ++++++|+++.|++.. ...+|+++||+|.+|+++||+|+||||||||+++|+|+++   |++|. .++|.+..     .
T Consensus        20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~-----i   90 (549)
T PRK13545         20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAAL-----I   90 (549)
T ss_pred             ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeee-----E
Confidence            4688999999987642 1237999999999999999999999999999999999999   99997 77775411     0


Q ss_pred             CCCcccCcchhhhHHHHHHccccc---------------------------cCCCCCCCCCCchhhhhhccCCccEEEec
Q 027060          155 GAPWTFNPLLLLNCLKNLRNQGSV---------------------------YAPSFDHGVGDPVEDDILVGLQHKVVIVD  207 (229)
Q Consensus       155 ~~~~~~~~~~~~tv~e~l~~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~~rvLi~d  207 (229)
                      ++  .+.....+|+.+|+.+....                           ....++.++.+++..++++...+++|++|
T Consensus        91 ~~--~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD  168 (549)
T PRK13545         91 AI--SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID  168 (549)
T ss_pred             Ee--ccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            11  11111224666665432110                           01123345556666666666677777777


Q ss_pred             CCeeeecccCHHHHHHHHhh
Q 027060          208 GNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       208 ~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+..||...+..+.+++..
T Consensus       169 EPTsgLD~~sr~~LlelL~e  188 (549)
T PRK13545        169 EALSVGDQTFTKKCLDKMNE  188 (549)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            77777777777777777653

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.78  E-value=2.6e-19  Score=170.42  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      -|+++||++.|.+..   .+|+|+||+|++|++++|+|+||||||||+++|+|+++    ++|. .++|.++.+   ...
T Consensus       349 ~i~~~~vsf~~~~~~---~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p----~~G~I~i~g~~i~~~~~~~l  421 (588)
T PRK11174        349 TIEAEDLEILSPDGK---TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP----YQGSLKINGIELRELDPESW  421 (588)
T ss_pred             eEEEEeeEEeccCCC---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC----CCcEEEECCEecccCCHHHH
Confidence            499999997664321   27999999999999999999999999999999999874    6886 889876432   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.+  .|++||+.++.
T Consensus       422 r~~i~~v~Q~~~LF~~TI~eNI~~g~  447 (588)
T PRK11174        422 RKHLSWVGQNPQLPHGTLRDNVLLGN  447 (588)
T ss_pred             HhheEEecCCCcCCCcCHHHHhhcCC
Confidence            3345555555543  79999999873

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.78  E-value=6e-19  Score=154.09  Aligned_cols=152  Identities=19%  Similarity=0.268  Sum_probs=105.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCce-EecCCCHH-----
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQDPK-----  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~g~~~~-----  148 (229)
                      +++++||+..|......+.+++||||+|++||++||||.|||||||+.+.|+|+++.  ..-.+|+ .++|+++.     
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            478999999997654456799999999999999999999999999999999999961  1114566 78888631     


Q ss_pred             HHHhhc--CCCcccCcch-----hhhHHHHHHccccc--------------------------------cCCCCCCCCCC
Q 027060          149 EAHARR--GAPWTFNPLL-----LLNCLKNLRNQGSV--------------------------------YAPSFDHGVGD  189 (229)
Q Consensus       149 ~~~~~~--~~~~~~~~~~-----~~tv~e~l~~~~~~--------------------------------~~~~~~~~~~~  189 (229)
                      ..+..+  .+.+.||++.     .+++-+.+......                                |-..++.++.|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence            111222  3677887753     23333333221111                                11234566777


Q ss_pred             chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      |+..++++..++++||.|||+..||.-.+.++.+++.+.
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l  199 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL  199 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHH
Confidence            777777777777777777777777777789998888753

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.78  E-value=1.2e-19  Score=170.87  Aligned_cols=148  Identities=17%  Similarity=0.259  Sum_probs=95.0

Q ss_pred             CCeEEEeeeeEEcCccc-------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~-------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .++|+++|+++.|+...       ....+|+++||+|.+||++||+||||||||||+|+|+|++    |++|. .++|.+
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~  348 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQP  348 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEE
Confidence            45799999999996210       0113799999999999999999999999999999999986    46887 888865


Q ss_pred             HHH-----H-HhhcCCCcccCcc-----hhhhHHHHHHccccccC---C-------------CCCC--CCCCchhhhhhc
Q 027060          147 PKE-----A-HARRGAPWTFNPL-----LLLNCLKNLRNQGSVYA---P-------------SFDH--GVGDPVEDDILV  197 (229)
Q Consensus       147 ~~~-----~-~~~~~~~~~~~~~-----~~~tv~e~l~~~~~~~~---~-------------~~~~--~~~~~~~~~l~~  197 (229)
                      +..     . ..+..+.+.+|..     ..+++.+|+.++...+.   +             .+..  ...++....++.
T Consensus       349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  428 (529)
T PRK15134        349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG  428 (529)
T ss_pred             ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence            421     1 1133455555543     23789999976422110   0             0000  011222334555


Q ss_pred             cCCccE-----EEecCCeeeeccc-------CHHHHHHHHh
Q 027060          198 GLQHKV-----VIVDGNYLFLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       198 ~~~~rv-----Li~d~~~LlLDEP-------~~~~l~~~l~  226 (229)
                      |+++|+     |+.+|++++||||       .+..+.+++.
T Consensus       429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  469 (529)
T PRK15134        429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK  469 (529)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHH
Confidence            555554     5566666666666       4666666665

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.78  E-value=1.7e-19  Score=173.43  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=57.7

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      |.+|+++||++.|++..    +|+|+||+|.+|+++||+||||||||||||+|+|+++   |++|. .++|
T Consensus         1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~   64 (635)
T PRK11147          1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQ   64 (635)
T ss_pred             CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCC
Confidence            35799999999998754    8999999999999999999999999999999999999   99997 6655

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.78  E-value=8.1e-19  Score=181.14  Aligned_cols=96  Identities=19%  Similarity=0.190  Sum_probs=74.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee-cCCCHHH---HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-DSQDPKE---AH  151 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~-~g~~~~~---~~  151 (229)
                      .|+++||++.|+... ...+|+|+||+|++|+++||+||||||||||+++|+|++.   |++|. .+ +|.++..   ..
T Consensus       382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~  457 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW  457 (1466)
T ss_pred             cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence            599999999998532 2238999999999999999999999999999999999999   99997 77 4565432   12


Q ss_pred             hhcCCCcccCcchh--hhHHHHHHccc
Q 027060          152 ARRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       152 ~~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      .+..+++++|.+.+  .|+++|+.++.
T Consensus       458 lr~~Ig~V~Q~~~LF~~TI~eNI~~g~  484 (1466)
T PTZ00265        458 WRSKIGVVSQDPLLFSNSIKNNIKYSL  484 (1466)
T ss_pred             HHHhccEecccccchhccHHHHHHhcC
Confidence            23334444444332  69999999863

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.78  E-value=2.5e-19  Score=168.03  Aligned_cols=59  Identities=22%  Similarity=0.372  Sum_probs=56.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      |.+|.++++++.|+++.    +|+++||+|.+|+++||||+||||||||||+|+|.+.   |++|.
T Consensus         1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~   59 (530)
T COG0488           1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGE   59 (530)
T ss_pred             CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCe
Confidence            45899999999998876    8999999999999999999999999999999999999   99996

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.78  E-value=3.2e-19  Score=171.81  Aligned_cols=149  Identities=16%  Similarity=0.192  Sum_probs=98.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      ++|+++|+++.|++......+|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|+++..     
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~   79 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA   79 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence            479999999999642112237999999999999999999999999999999999999   99997 888876421     


Q ss_pred             H--HhhcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhc
Q 027060          150 A--HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       150 ~--~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      .  ..+..+.+.+|...   .+++.||+.+......                           ..++.++.+++..+.++
T Consensus        80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL  159 (648)
T PRK10535         80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL  159 (648)
T ss_pred             HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence            1  12334444444433   3688888875321100                           01122333444444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++|+|+..||...++.+.+++.+
T Consensus       160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~  189 (648)
T PRK10535        160 MNGGQVILADEPTGALDSHSGEEVMAILHQ  189 (648)
T ss_pred             hcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            445555555555555555567777777654

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.78  E-value=2.4e-19  Score=153.63  Aligned_cols=137  Identities=20%  Similarity=0.211  Sum_probs=87.9

Q ss_pred             EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhhc
Q 027060           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHARR  154 (229)
Q Consensus        79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~~  154 (229)
                      +++||++.    .    +|+++||+|.+|++++|+|+||||||||+++|+|+++   + +|. .++|+++..   ...+.
T Consensus         2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~-~G~i~~~g~~i~~~~~~~~~~   69 (248)
T PRK03695          2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---G-SGSIQFAGQPLEAWSAAELAR   69 (248)
T ss_pred             cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---C-CeEEEECCEecCcCCHHHHhh
Confidence            56778774    1    6899999999999999999999999999999999876   5 887 888875421   11112


Q ss_pred             CCCcccCc---chhhhHHHHHHccccccCC--------------------------CCCCCCCCchhhhhhccC------
Q 027060          155 GAPWTFNP---LLLLNCLKNLRNQGSVYAP--------------------------SFDHGVGDPVEDDILVGL------  199 (229)
Q Consensus       155 ~~~~~~~~---~~~~tv~e~l~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~------  199 (229)
                      .+.+.+|.   ...+++.+|+.+.......                          .++.++.+++..+.++..      
T Consensus        70 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~  149 (248)
T PRK03695         70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN  149 (248)
T ss_pred             heEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence            23333333   3347899998865321100                          111233344444444432      


Q ss_pred             -CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 -QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 -~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                       +++++++|+|+..||...+..+.+++..
T Consensus       150 p~p~llllDEPt~~LD~~~~~~l~~~L~~  178 (248)
T PRK03695        150 PAGQLLLLDEPMNSLDVAQQAALDRLLSE  178 (248)
T ss_pred             CCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence             3456666666666666567777777654

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.77  E-value=1e-18  Score=180.32  Aligned_cols=147  Identities=16%  Similarity=0.139  Sum_probs=103.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--------------------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--------------------  136 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p--------------------  136 (229)
                      -|+++||+++|++.. ...+|+|+||+|++|+++||+|+||||||||+++|.|++.   |                    
T Consensus      1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred             eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence            499999999997532 1238999999999999999999999999999999999998   7                    


Q ss_pred             ----------------------------------CCce-EecCCCHHH---HHhhcCCCcccCcchh--hhHHHHHHccc
Q 027060          137 ----------------------------------QKAS-SFDSQDPKE---AHARRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       137 ----------------------------------~~G~-~~~g~~~~~---~~~~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                                                        ++|. .++|.++.+   ...|..+.+++|.+.+  .|++|||.++.
T Consensus      1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265       1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence                                              5886 899987643   2233445556666544  79999999973


Q ss_pred             ccc--------------------------------CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHH
Q 027060          177 SVY--------------------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  224 (229)
Q Consensus       177 ~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~  224 (229)
                      .-.                                ....+.+++||+..++++..+++||++||.+--||..+.+.+.+.
T Consensus      1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265       1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred             CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence            210                                001223444555555555555555555555555555567777776


Q ss_pred             Hhh
Q 027060          225 FDE  227 (229)
Q Consensus       225 l~~  227 (229)
                      ++.
T Consensus      1401 L~~ 1403 (1466)
T PTZ00265       1401 IVD 1403 (1466)
T ss_pred             HHH
Confidence            653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=5.2e-19  Score=170.10  Aligned_cols=62  Identities=24%  Similarity=0.308  Sum_probs=57.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      +|+++||++.|+++.    +|+|+||+|.+|+++||+||||||||||||+|+|+++   |++|. .+.|.
T Consensus         1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~   63 (638)
T PRK10636          1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGN   63 (638)
T ss_pred             CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC
Confidence            489999999998865    8999999999999999999999999999999999999   99997 66654

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.77  E-value=3.5e-19  Score=150.83  Aligned_cols=76  Identities=14%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCce-EecCCCHHHHHh-hcCCCcccCcc-----h
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQDPKEAHA-RRGAPWTFNPL-----L  164 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p----~~G~-~~~g~~~~~~~~-~~~~~~~~~~~-----~  164 (229)
                      +++|+||+|++|++++|+||||||||||+++|+|+++   |    ++|. .++|+++..... +..+.+.+|.+     .
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~   77 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP   77 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence            3689999999999999999999999999999999999   8    8997 888877543211 12344444443     2


Q ss_pred             hhhHHHHHHc
Q 027060          165 LLNCLKNLRN  174 (229)
Q Consensus       165 ~~tv~e~l~~  174 (229)
                      .+++.+++.+
T Consensus        78 ~~t~~~~~~~   87 (230)
T TIGR02770        78 LFTMGNHAIE   87 (230)
T ss_pred             ccCHHHHHHH
Confidence            2567666643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=7.9e-19  Score=162.93  Aligned_cols=144  Identities=17%  Similarity=0.195  Sum_probs=105.7

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH---HHHhh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---EAHAR  153 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---~~~~~  153 (229)
                      ++++|+++.|++.+   .+++|+||++++|+.++|+|+||||||||+++|+|+++   |++|+ .++|.+..   ....+
T Consensus       321 i~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~  394 (559)
T COG4988         321 ISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR  394 (559)
T ss_pred             eeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence            55569999998863   27899999999999999999999999999999999999   99997 89988643   33455


Q ss_pred             cCCCcccCcchh--hhHHHHHHcccccc-----------------CC--------------CCCCCCCCchhhhhhccCC
Q 027060          154 RGAPWTFNPLLL--LNCLKNLRNQGSVY-----------------AP--------------SFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~-----------------~~--------------~~~~~~~~~~~~~l~~~~~  200 (229)
                      +.+.++.|.+..  -|++||+.++..-.                 .+              ..+.++.+|+..++++..+
T Consensus       395 k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~  474 (559)
T COG4988         395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP  474 (559)
T ss_pred             hHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence            666677666654  68999998764411                 00              0123444555555666666


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +.++++||++.-||-.+.+.+.+.+.+
T Consensus       475 ~~l~llDEpTA~LD~etE~~i~~~l~~  501 (559)
T COG4988         475 ASLLLLDEPTAHLDAETEQIILQALQE  501 (559)
T ss_pred             CCEEEecCCccCCCHhHHHHHHHHHHH
Confidence            666666666666666677777666543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.77  E-value=2.9e-19  Score=141.06  Aligned_cols=135  Identities=18%  Similarity=0.175  Sum_probs=96.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      ++.++||+.+.++..    .|.++||+|.+||++-|+||+|||||||+..+.|.+...+.-+|+ .++++++..   ..+
T Consensus         2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR   77 (213)
T COG4136           2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR   77 (213)
T ss_pred             ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence            477899999888876    678999999999999999999999999999999999833344687 677776543   233


Q ss_pred             hcCCCcccCc---chhhhHHHHHHccccccCCC--CC------------CCCCCchhhhhhccCCccE-----EEecCCe
Q 027060          153 RRGAPWTFNP---LLLLNCLKNLRNQGSVYAPS--FD------------HGVGDPVEDDILVGLQHKV-----VIVDGNY  210 (229)
Q Consensus       153 ~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~~--~~------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~  210 (229)
                      .+|+  .||+   ++.++|.+|+.|......+.  ..            .+...+-+..++.|+++||     |+-+|.+
T Consensus        78 q~Gi--LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~  155 (213)
T COG4136          78 QIGI--LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA  155 (213)
T ss_pred             heee--eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce
Confidence            4444  4444   34489999998864322110  00            1223344455666666665     7888999


Q ss_pred             eeecccC
Q 027060          211 LFLDGGV  217 (229)
Q Consensus       211 LlLDEP~  217 (229)
                      ++||||.
T Consensus       156 lLLDEPF  162 (213)
T COG4136         156 LLLDEPF  162 (213)
T ss_pred             eeeCCch
Confidence            9999984

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.77  E-value=1e-18  Score=152.75  Aligned_cols=62  Identities=11%  Similarity=0.229  Sum_probs=55.1

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      ..+.|+++|+++.  +..    +|+++||+|.+||+++|+|+||||||||+++|+|+++   |++|. .++|
T Consensus        36 ~~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g   98 (282)
T cd03291          36 DDNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG   98 (282)
T ss_pred             CCCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC
Confidence            4557999999985  222    7999999999999999999999999999999999999   99997 6666

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.77  E-value=6.9e-19  Score=164.39  Aligned_cols=144  Identities=15%  Similarity=0.182  Sum_probs=93.5

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      .++|+++|+++.|.  .    +|+++||+|.+||++||+|+||||||||+++|+|+++   |++|. .++|.++..    
T Consensus       248 ~~~i~~~~l~~~~~--~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~  318 (491)
T PRK10982        248 EVILEVRNLTSLRQ--P----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNAN  318 (491)
T ss_pred             CcEEEEeCcccccC--c----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHH
Confidence            35799999998752  2    7999999999999999999999999999999999999   99997 788865321    


Q ss_pred             HHhhcCCCcccCcc------hhhhHHHH-----HHcccc----------------------c-----c--CCCCCCCCCC
Q 027060          150 AHARRGAPWTFNPL------LLLNCLKN-----LRNQGS----------------------V-----Y--APSFDHGVGD  189 (229)
Q Consensus       150 ~~~~~~~~~~~~~~------~~~tv~e~-----l~~~~~----------------------~-----~--~~~~~~~~~~  189 (229)
                      ...+.++++.+|..      ..+++.+|     +.+...                      +     .  ...++.++.+
T Consensus       319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q  398 (491)
T PRK10982        319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ  398 (491)
T ss_pred             HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence            12233444444331      11333322     321100                      0     0  0122334455


Q ss_pred             chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++..+.++..++++|++|+|+..||...+..+.+++..
T Consensus       399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~  436 (491)
T PRK10982        399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE  436 (491)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence            55555555556666666666666666678888777743

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.76  E-value=6.2e-19  Score=147.99  Aligned_cols=71  Identities=17%  Similarity=0.115  Sum_probs=55.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-E-ecCCCHHHHHhhcCCCcccCcchhhhHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQDPKEAHARRGAPWTFNPLLLLNCLKNLR  173 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~-~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~  173 (229)
                      +|+|+||+|++|++++|+||||||||||+++|+|+++   |++|. . ++|....       +.+.+..++.+++.+|+.
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~~-------~~~~~~l~~~ltv~enl~   71 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDALP-------LGANSFILPGLTGEENAR   71 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCceec-------cccccccCCcCcHHHHHH
Confidence            6899999999999999999999999999999999999   99997 4 5554321       112222333468888887


Q ss_pred             ccc
Q 027060          174 NQG  176 (229)
Q Consensus       174 ~~~  176 (229)
                      +..
T Consensus        72 ~~~   74 (213)
T PRK15177         72 MMA   74 (213)
T ss_pred             HHH
Confidence            643

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.76  E-value=2.4e-18  Score=159.94  Aligned_cols=149  Identities=19%  Similarity=0.281  Sum_probs=99.0

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC----Cce-EecCCCHH--
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KAS-SFDSQDPK--  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~----~G~-~~~g~~~~--  148 (229)
                      ++|+++||++.|......+.+++||||+|.+||++||+|.+||||||+.+.|.|+++   +.    +|. .++|.++.  
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l   80 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL   80 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence            489999999999866445668999999999999999999999999999999999998   55    686 88887532  


Q ss_pred             ---HHHhhc--CCCcccCcch-----hhhHHHHHHcccccc------------------------------CCCCCCCCC
Q 027060          149 ---EAHARR--GAPWTFNPLL-----LLNCLKNLRNQGSVY------------------------------APSFDHGVG  188 (229)
Q Consensus       149 ---~~~~~~--~~~~~~~~~~-----~~tv~e~l~~~~~~~------------------------------~~~~~~~~~  188 (229)
                         ..+..+  .+.+.||.+.     .+++.+.+......+                              -+.++.++.
T Consensus        81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r  160 (539)
T COG1123          81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR  160 (539)
T ss_pred             CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence               122222  2567777653     255555554322211                              112333444


Q ss_pred             CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ||+..++++..++++||.|||+-.||.-.+.++.+++..
T Consensus       161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~  199 (539)
T COG1123         161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKD  199 (539)
T ss_pred             HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHH
Confidence            444444444444444444444444444468888887754

>PRK13409 putative ATPase RIL; Provisional

Probab=99.76  E-value=8.1e-19  Score=167.24  Aligned_cols=138  Identities=15%  Similarity=0.167  Sum_probs=94.3

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA  152 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~  152 (229)
                      ..++|+++|+++.|++.     .|+++||+|.+||+++|+||||||||||+|+|+|+++   |++|. .++ .       
T Consensus       337 ~~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-~-------  400 (590)
T PRK13409        337 RETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-L-------  400 (590)
T ss_pred             CceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-e-------
Confidence            34589999999999763     4889999999999999999999999999999999999   99997 443 1       


Q ss_pred             hcCC-CcccCcchhhhHHHHHHcccccc----------------------CCCCCCCCCCchhhhhhccCCccEEEecCC
Q 027060          153 RRGA-PWTFNPLLLLNCLKNLRNQGSVY----------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGN  209 (229)
Q Consensus       153 ~~~~-~~~~~~~~~~tv~e~l~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~  209 (229)
                      .+++ ++.......+|+.+++.++....                      ...++.++.+++..+.++..++++|++|+|
T Consensus       401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEP  480 (590)
T PRK13409        401 KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP  480 (590)
T ss_pred             eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            2222 22222223367888876531110                      011233445555555555556666666666


Q ss_pred             eeeecccCHHHHHHHHhh
Q 027060          210 YLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       210 ~LlLDEP~~~~l~~~l~~  227 (229)
                      +..||...+..+.+++..
T Consensus       481 t~~LD~~~~~~l~~~l~~  498 (590)
T PRK13409        481 SAHLDVEQRLAVAKAIRR  498 (590)
T ss_pred             ccCCCHHHHHHHHHHHHH
Confidence            666666667777777653

>PLN03211 ABC transporter G-25; Provisional

Probab=99.76  E-value=6.2e-19  Score=169.94  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC--Cce-EecCCCHHHHHhhcC
Q 027060           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQDPKEAHARRG  155 (229)
Q Consensus        79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~--~G~-~~~g~~~~~~~~~~~  155 (229)
                      .++|+++.|+++.    +|+|+|+++++||++||+||||||||||+++|+|.++   |.  +|. .++|+++.... ...
T Consensus        70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~-~~~  141 (659)
T PLN03211         70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQI-LKR  141 (659)
T ss_pred             ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhh-ccc
Confidence            3577889998765    8999999999999999999999999999999999988   75  787 88997653322 122


Q ss_pred             CCcccCc---chhhhHHHHHHccc
Q 027060          156 APWTFNP---LLLLNCLKNLRNQG  176 (229)
Q Consensus       156 ~~~~~~~---~~~~tv~e~l~~~~  176 (229)
                      +.+.+|.   ...+|+.|++.+..
T Consensus       142 i~yv~Q~~~l~~~lTV~E~l~~~a  165 (659)
T PLN03211        142 TGFVTQDDILYPHLTVRETLVFCS  165 (659)
T ss_pred             eEEECcccccCCcCCHHHHHHHHH
Confidence            3444443   33479999998753

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.76  E-value=1.2e-18  Score=163.20  Aligned_cols=89  Identities=12%  Similarity=0.180  Sum_probs=69.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      .++|+++|+++     .    +|+++||+|.+||+++|+||||||||||+|+|+|+++   |++|. .++|+++..    
T Consensus       255 ~~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~  322 (501)
T PRK10762        255 EVRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQ  322 (501)
T ss_pred             CcEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence            35799999984     1    6899999999999999999999999999999999999   99997 888865321    


Q ss_pred             HHhhcCCCcccCcc------hhhhHHHHHHcc
Q 027060          150 AHARRGAPWTFNPL------LLLNCLKNLRNQ  175 (229)
Q Consensus       150 ~~~~~~~~~~~~~~------~~~tv~e~l~~~  175 (229)
                      ...+.++++.+|.+      ..+++.+|+.++
T Consensus       323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~  354 (501)
T PRK10762        323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLT  354 (501)
T ss_pred             HHHHCCCEEecCccccCCCcCCCcHHHHhhhh
Confidence            12234455555543      237899988753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.76  E-value=8.3e-20  Score=141.96  Aligned_cols=117  Identities=20%  Similarity=0.327  Sum_probs=75.2

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhhcCCCcccCc---chhhhHH
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHARRGAPWTFNP---LLLLNCL  169 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~~~~~~~~~~---~~~~tv~  169 (229)
                      |+|+||+|++|++++|+|+||||||||+++|+|+.+   |++|. .++|.++..   ...+..+.+.++.   ...+++.
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~   77 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR   77 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence            579999999999999999999999999999999999   99997 788876533   2223333333333   3335566


Q ss_pred             HHHHcc------ccccCCC-CCCCCCCchhhhhhccCCccE-----EEecCCeeeecccC
Q 027060          170 KNLRNQ------GSVYAPS-FDHGVGDPVEDDILVGLQHKV-----VIVDGNYLFLDGGV  217 (229)
Q Consensus       170 e~l~~~------~~~~~~~-~~~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP~  217 (229)
                      +|....      ..+.... .+.... .....++.|+++|+     ++.+|++++||||+
T Consensus        78 ~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt  136 (137)
T PF00005_consen   78 ENESDERIEEVLKKLGLEDLLDRKIG-QRASSLSGGEKQRLALARALLKNPKLLLLDEPT  136 (137)
T ss_dssp             HHHHHHHHHHHHHHTTHGGGTGSBGT-SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred             cccccccccccccccccccccccccc-cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            652110      0000000 011111 11144555555444     88899999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.75  E-value=2.1e-18  Score=163.14  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=93.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++..   .+|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  395 (547)
T PRK10522        322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY  395 (547)
T ss_pred             eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence            599999999997532   27999999999999999999999999999999999999   99997 888876432   122


Q ss_pred             hcCCCcccCcchh--hhHHHH------------HH---cccccc-------CCCCCCCCCCchhhhhhccCCccEEEecC
Q 027060          153 RRGAPWTFNPLLL--LNCLKN------------LR---NQGSVY-------APSFDHGVGDPVEDDILVGLQHKVVIVDG  208 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~------------l~---~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~  208 (229)
                      +..+.+.+|...+  .|+.+|            +.   +.....       ...++.++.+|...++++..+++++++|+
T Consensus       396 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE  475 (547)
T PRK10522        396 RKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE  475 (547)
T ss_pred             hhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            3334445554432  233333            11   010000       11233444555555555555566666666


Q ss_pred             CeeeecccCHHHHHHHH
Q 027060          209 NYLFLDGGVWKDVSSMF  225 (229)
Q Consensus       209 ~~LlLDEP~~~~l~~~l  225 (229)
                      ++..||..+.+.+.+.+
T Consensus       476 ~ts~LD~~~~~~i~~~l  492 (547)
T PRK10522        476 WAADQDPHFRREFYQVL  492 (547)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            66666665666665554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.1e-18  Score=161.62  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~  150 (229)
                      .+++++|++..    .    +++|+||+|.+||+++|+||||||||||+|+|+|+++   |++|. .++|+++.    ..
T Consensus       256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~  324 (501)
T PRK11288        256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD  324 (501)
T ss_pred             cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence            47899999732    2    7899999999999999999999999999999999999   99997 78886532    11


Q ss_pred             HhhcCCCcccCcc------hhhhHHHHHHcc
Q 027060          151 HARRGAPWTFNPL------LLLNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~------~~~tv~e~l~~~  175 (229)
                      ..+.++.+.+|.+      ..+++.+|+.++
T Consensus       325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~  355 (501)
T PRK11288        325 AIRAGIMLCPEDRKAEGIIPVHSVADNINIS  355 (501)
T ss_pred             HHhCCCEEcCcCHhhCCCcCCCCHHHHhccc
Confidence            2234455555542      237888888653

>PLN03232 ABC transporter C family member; Provisional

Probab=99.75  E-value=2e-18  Score=178.92  Aligned_cols=94  Identities=20%  Similarity=0.165  Sum_probs=74.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++..  -.+|+|+||+|++||.+||+|++|||||||+++|.|+++   |++|. .++|.++..   ...
T Consensus      1234 ~I~f~nVsf~Y~~~~--~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGL--PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred             cEEEEEEEEEECCCC--CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence            499999999996431  127999999999999999999999999999999999999   99997 999987543   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      |..+..++|.+.+  -|+++||..+
T Consensus      1309 R~~i~iVpQdp~LF~gTIr~NL~~~ 1333 (1495)
T PLN03232       1309 RRVLSIIPQSPVLFSGTVRFNIDPF 1333 (1495)
T ss_pred             HhhcEEECCCCeeeCccHHHHcCCC
Confidence            3334444444433  5899999764

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=7.5e-18  Score=167.24  Aligned_cols=147  Identities=19%  Similarity=0.218  Sum_probs=113.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      -|+++||++.|+.++ .+.+|+|+||+|++|+.+|||||+||||||.+-+|..++.   |++|. .+||.+++.   ...
T Consensus       987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred             EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence            399999999999764 5669999999999999999999999999999999999999   99997 999987533   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccc-c-------------------------------CCCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSV-Y-------------------------------APSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~-~-------------------------------~~~~~~~~~~~~~~~l~~~  198 (229)
                      |..++.+.|.+.+  -|++||+.+|..- .                               ....+.+++||.+.++++.
T Consensus      1063 R~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred             HHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence            3334444444433  7999999998211 0                               0123356677777777777


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+++||++||-+--||-...+-+.+.+|.
T Consensus      1143 RnPkILLLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred             cCCCeeeeeccchhhhhhhHHHHHHHHHH
Confidence            77777777877777777788888887774

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.74  E-value=2.5e-18  Score=162.92  Aligned_cols=144  Identities=15%  Similarity=0.031  Sum_probs=94.7

Q ss_pred             eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      .|+++||+++|++... ...+|+|+||++++|++++|+||||||||||+++|+|++.   |++|. .++|.++..   ..
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~  413 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD  413 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            5999999999976311 1237999999999999999999999999999999999999   99997 888876432   12


Q ss_pred             hhcCCCcccCcchh--hhHHHHHHc------------ccccc--C----------CCCCCCCCCchhhhhhccCCccEEE
Q 027060          152 ARRGAPWTFNPLLL--LNCLKNLRN------------QGSVY--A----------PSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       152 ~~~~~~~~~~~~~~--~tv~e~l~~------------~~~~~--~----------~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      .+..+.+.+|...+  .++.+|...            ...+.  .          ...+.++.+|+..++++..++++++
T Consensus       414 ~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili  493 (555)
T TIGR01194       414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL  493 (555)
T ss_pred             HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            22334444444332  344444210            00000  0          1233445555555555566666666


Q ss_pred             ecCCeeeecccCHHHHHH
Q 027060          206 VDGNYLFLDGGVWKDVSS  223 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~  223 (229)
                      +||++..||+.+++.+.+
T Consensus       494 lDE~ts~LD~~~~~~i~~  511 (555)
T TIGR01194       494 FDEWAADQDPAFKRFFYE  511 (555)
T ss_pred             EeCCccCCCHHHHHHHHH
Confidence            666666666666777755

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.74  E-value=3.2e-18  Score=178.13  Aligned_cols=94  Identities=18%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++...  .+|+|+||+|++||++||+|++|||||||+++|.|+++   |++|. .++|.++..   ...
T Consensus      1237 ~I~f~nVsf~Y~~~~~--~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELP--PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred             cEEEEEEEEEeCCCCC--ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence            5999999999975311  27999999999999999999999999999999999999   99997 999986432   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      |..+..++|.+.+  -|+++||..+
T Consensus      1312 R~~IsiVpQdp~LF~GTIreNLd~~ 1336 (1622)
T PLN03130       1312 RKVLGIIPQAPVLFSGTVRFNLDPF 1336 (1622)
T ss_pred             HhccEEECCCCccccccHHHHhCcC
Confidence            3334444444433  6899999764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.74  E-value=3.7e-18  Score=160.33  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      .++|+++|+++     .    +|+++||+|.+|+++||+||||||||||+|+|+|+++   |++|. .++|.++..    
T Consensus       266 ~~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~  333 (510)
T PRK15439        266 APVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTA  333 (510)
T ss_pred             CceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHH
Confidence            45799999983     1    5889999999999999999999999999999999999   99997 788864321    


Q ss_pred             HHhhcCCCcccCc------chhhhHHHHHH
Q 027060          150 AHARRGAPWTFNP------LLLLNCLKNLR  173 (229)
Q Consensus       150 ~~~~~~~~~~~~~------~~~~tv~e~l~  173 (229)
                      ...+.++.+.+|.      +..+++.+|+.
T Consensus       334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~  363 (510)
T PRK15439        334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVC  363 (510)
T ss_pred             HHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence            1123345444443      22257777764

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.73  E-value=3.9e-18  Score=138.68  Aligned_cols=149  Identities=18%  Similarity=0.232  Sum_probs=97.4

Q ss_pred             CCeEEEeeeeEEcCccc-----cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH
Q 027060           75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~-----~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~  148 (229)
                      +++++++|++|.|....     ..+.+++.|||++++|+.++|||.||||||||.|+|+|+++   |++|+ .++|+.+.
T Consensus         2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~   78 (267)
T COG4167           2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH   78 (267)
T ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence            56799999999986531     23458899999999999999999999999999999999999   99997 88887532


Q ss_pred             H---HHhhcCCCcccCcchh-----hh-----------------------HHHHHHcccc------ccCCCCCCCCCCch
Q 027060          149 E---AHARRGAPWTFNPLLL-----LN-----------------------CLKNLRNQGS------VYAPSFDHGVGDPV  191 (229)
Q Consensus       149 ~---~~~~~~~~~~~~~~~~-----~t-----------------------v~e~l~~~~~------~~~~~~~~~~~~~~  191 (229)
                      .   ..+...+-+.||++.-     +.                       +++.+.....      ++......++++++
T Consensus        79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV  158 (267)
T COG4167          79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV  158 (267)
T ss_pred             ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence            1   1222223344444321     22                       2222222111      11112234566666


Q ss_pred             hhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       192 ~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      +.+.++-..++++|.|+.+-.||---+.++.+++-
T Consensus       159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L  193 (267)
T COG4167         159 ALARALILRPKIIIADEALASLDMSMRSQLINLML  193 (267)
T ss_pred             HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence            66666666666666666666666655666666543

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.73  E-value=7.6e-18  Score=162.61  Aligned_cols=86  Identities=13%  Similarity=0.018  Sum_probs=65.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      ..|+++||++.|++..   .+|+++||+|++||+++|+||||||||||+++|+|+++   |++|. .+++.        .
T Consensus       450 ~~i~~~nv~~~~~~~~---~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~~--------~  515 (659)
T TIGR00954       450 NGIKFENIPLVTPNGD---VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPAK--------G  515 (659)
T ss_pred             CeEEEEeeEEECCCCC---eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecCC--------C
Confidence            3699999999996421   27999999999999999999999999999999999999   99997 54431        1


Q ss_pred             CCCcccCcch--hhhHHHHHHcc
Q 027060          155 GAPWTFNPLL--LLNCLKNLRNQ  175 (229)
Q Consensus       155 ~~~~~~~~~~--~~tv~e~l~~~  175 (229)
                      .+.+.+|.+.  ..|+.||+.++
T Consensus       516 ~i~~v~Q~~~l~~~tv~eni~~~  538 (659)
T TIGR00954       516 KLFYVPQRPYMTLGTLRDQIIYP  538 (659)
T ss_pred             cEEEECCCCCCCCcCHHHHHhcC
Confidence            2222333321  13777887764

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=7.6e-18  Score=136.05  Aligned_cols=146  Identities=16%  Similarity=0.210  Sum_probs=101.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC---C--H-
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ---D--P-  147 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~---~--~-  147 (229)
                      .|++++.+++|.|++..    -.++|||++.+||+.||+|.+|||||||+++|.+-+.   |+.|. .+...   .  + 
T Consensus         4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~   76 (258)
T COG4107           4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY   76 (258)
T ss_pred             CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence            46899999999999876    7889999999999999999999999999999999999   99996 44322   1  1 


Q ss_pred             --HH----HHhhcCCCcccCcchh---------hhHHHHHHcc-cccc------------------------CCCCCCCC
Q 027060          148 --KE----AHARRGAPWTFNPLLL---------LNCLKNLRNQ-GSVY------------------------APSFDHGV  187 (229)
Q Consensus       148 --~~----~~~~~~~~~~~~~~~~---------~tv~e~l~~~-~~~~------------------------~~~~~~~~  187 (229)
                        .+    ...+-.+++++|++..         -++-|.+... .+-|                        -..|+.++
T Consensus        77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM  156 (258)
T COG4107          77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM  156 (258)
T ss_pred             hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence              11    1123346677776632         1222333211 1100                        01355667


Q ss_pred             CCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       188 ~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++...+..+...+|++.+|+|.-+||--.+.++.+++..
T Consensus       157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrg  196 (258)
T COG4107         157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG  196 (258)
T ss_pred             HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHH
Confidence            7777777777777777777777777777778888877653

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.73  E-value=4.5e-18  Score=146.65  Aligned_cols=54  Identities=22%  Similarity=0.312  Sum_probs=48.0

Q ss_pred             eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceE
Q 027060           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~  141 (229)
                      .+|+++|++..   .+|+++++ +.+|++++|+||||||||||+++|+|+++   |++|..
T Consensus         4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I   57 (255)
T cd03236           4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKF   57 (255)
T ss_pred             cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceE
Confidence            47899997542   27899995 99999999999999999999999999999   999974

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.72  E-value=7.5e-18  Score=150.70  Aligned_cols=149  Identities=19%  Similarity=0.281  Sum_probs=110.2

Q ss_pred             CCCeEEEeeeeEEcCcc-------ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~-------~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      ..++++++++..+|.-+       ...+.++++|||++.+|+.+||||.+|||||||-++|.++++   +. |. .+.|+
T Consensus       273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~-G~I~F~G~  348 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQ-GEIRFDGQ  348 (534)
T ss_pred             CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cC-ceEEECCc
Confidence            34589999999999532       223668999999999999999999999999999999999998   66 75 88888


Q ss_pred             CHHH------HHhhcCCCcccCcch-----hhhHHHHHHccccccCCCCC------------------CCCCCchhhhhh
Q 027060          146 DPKE------AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVYAPSFD------------------HGVGDPVEDDIL  196 (229)
Q Consensus       146 ~~~~------~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~~~~~------------------~~~~~~~~~~l~  196 (229)
                      ++..      ...+..+..+||+++     -++|.+-+..+..++.+..+                  .....+.+.+++
T Consensus       349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFS  428 (534)
T COG4172         349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFS  428 (534)
T ss_pred             cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccC
Confidence            6431      122334445555553     28999999888877764432                  233456666777


Q ss_pred             ccCCccE-----EEecCCeeeecccC-------HHHHHHHHh
Q 027060          197 VGLQHKV-----VIVDGNYLFLDGGV-------WKDVSSMFD  226 (229)
Q Consensus       197 ~~~~~rv-----Li~d~~~LlLDEP~-------~~~l~~~l~  226 (229)
                      .|+.+||     ++++|.+++||||+       +.++.+++.
T Consensus       429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr  470 (534)
T COG4172         429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR  470 (534)
T ss_pred             cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence            7776666     88888888888885       667776664

>PTZ00243 ABC transporter; Provisional

Probab=99.72  E-value=8.6e-18  Score=174.61  Aligned_cols=93  Identities=17%  Similarity=0.178  Sum_probs=74.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++..  -.+|+||||+|++||++||+|++|||||||+++|.|+++   |++|. .++|.++..   ...
T Consensus      1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred             eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence            499999999997632  137999999999999999999999999999999999999   99997 999987532   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRN  174 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~  174 (229)
                      |..+..++|.+.+  -|+++||..
T Consensus      1383 R~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243       1383 RRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred             HhcceEECCCCccccccHHHHhCc
Confidence            3445555555443  689999975

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.72  E-value=5.1e-18  Score=140.84  Aligned_cols=148  Identities=18%  Similarity=0.160  Sum_probs=102.5

Q ss_pred             eEEEeeeeEEcCcc-ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hh
Q 027060           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~-~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~  152 (229)
                      |+++.|+.+.|... ...-.+|+++|++|.+|+++.|+|.||||||||+++|+|-+.   |++|. .++|.++...  ..
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~   77 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK   77 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence            36677888777543 223448999999999999999999999999999999999999   99997 9999886432  22


Q ss_pred             hcC-CCcccCcchh-----hhHHHHHHcccccc-----C------------------------------CCCCCCCCCch
Q 027060          153 RRG-APWTFNPLLL-----LNCLKNLRNQGSVY-----A------------------------------PSFDHGVGDPV  191 (229)
Q Consensus       153 ~~~-~~~~~~~~~~-----~tv~e~l~~~~~~~-----~------------------------------~~~~~~~~~~~  191 (229)
                      +.+ +..+||++..     +|+.||+.+...-.     .                              ..++.++.|.+
T Consensus        78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal  157 (263)
T COG1101          78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL  157 (263)
T ss_pred             HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence            222 4667777643     99999998743210     0                              01122333333


Q ss_pred             hhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       192 ~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ...++....+++|++|+-..-||+-....++++-++
T Consensus       158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~k  193 (263)
T COG1101         158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAK  193 (263)
T ss_pred             HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHH
Confidence            334445566777777777777777666666665444

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.72  E-value=1.3e-17  Score=171.74  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=73.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      .+++++||++.|+.+.....+|+|||++|++|++++|+|||||||||||++|+|+++...+++|. .++|+++... .+.
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~-~~~  836 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-FQR  836 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChh-hhc
Confidence            35899999999963222234899999999999999999999999999999999987511246787 8899875322 222


Q ss_pred             CCCcccCc---chhhhHHHHHHccc
Q 027060          155 GAPWTFNP---LLLLNCLKNLRNQG  176 (229)
Q Consensus       155 ~~~~~~~~---~~~~tv~e~l~~~~  176 (229)
                      .+++.+|.   ...+|++|++.+..
T Consensus       837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a  861 (1394)
T TIGR00956       837 SIGYVQQQDLHLPTSTVRESLRFSA  861 (1394)
T ss_pred             ceeeecccccCCCCCCHHHHHHHHH
Confidence            33444443   33489999998754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.72  E-value=7.2e-18  Score=144.61  Aligned_cols=122  Identities=15%  Similarity=0.208  Sum_probs=75.0

Q ss_pred             cccceeeeec-----CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC-CcccCcchhhhH
Q 027060           96 PTSALASNVN-----VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA-PWTFNPLLLLNC  168 (229)
Q Consensus        96 ~l~~isl~i~-----~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~-~~~~~~~~~~tv  168 (229)
                      .+++++|++.     +||+++|+||||||||||+++|+|+++   |++|. .++|..       +++ ++........|+
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~~-------i~~~~q~~~~~~~~tv   78 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELDT-------VSYKPQYIKADYEGTV   78 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCce-------EEEecccccCCCCCCH
Confidence            4556666664     799999999999999999999999999   99997 777742       221 221111222566


Q ss_pred             HHHHHcccccc-----------------------CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHH
Q 027060          169 LKNLRNQGSVY-----------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  225 (229)
Q Consensus       169 ~e~l~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l  225 (229)
                      .+++.+.....                       ...++.++.+++..+.++...++++++|+|+..||...+..+.+++
T Consensus        79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l  158 (246)
T cd03237          79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI  158 (246)
T ss_pred             HHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            66664321100                       0122334445555555555555556666666666655677777666


Q ss_pred             hh
Q 027060          226 DE  227 (229)
Q Consensus       226 ~~  227 (229)
                      ..
T Consensus       159 ~~  160 (246)
T cd03237         159 RR  160 (246)
T ss_pred             HH
Confidence            54

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03073 ABC transporter F family; Provisional

Probab=99.72  E-value=9.8e-18  Score=162.85  Aligned_cols=64  Identities=19%  Similarity=0.295  Sum_probs=56.3

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      .++|+++||++.|++..   .+|+++||+|.+|++++|+||||||||||+|+|+|+++   |++|. .+.+
T Consensus       506 ~~~L~~~~ls~~y~~~~---~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~  570 (718)
T PLN03073        506 PPIISFSDASFGYPGGP---LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA  570 (718)
T ss_pred             CceEEEEeeEEEeCCCC---eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC
Confidence            46899999999996421   27999999999999999999999999999999999999   99997 5443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.72  E-value=1.3e-17  Score=173.14  Aligned_cols=92  Identities=22%  Similarity=0.170  Sum_probs=73.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++...  .+|+|+||+|++||++||+|++|||||||+++|.|+++   |++|. .++|.++..   ...
T Consensus      1284 ~I~f~nVsf~Y~~~~~--~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred             cEEEEEEEEEeCCCCc--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence            5999999999975321  38999999999999999999999999999999999999   99997 999987532   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHH
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLR  173 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~  173 (229)
                      |..+...+|++.+  -|+++||.
T Consensus      1359 R~~i~iVpQdp~LF~gTIr~NLd 1381 (1522)
T TIGR00957      1359 RFKITIIPQDPVLFSGSLRMNLD 1381 (1522)
T ss_pred             HhcCeEECCCCcccCccHHHHcC
Confidence            3334444444433  58999987

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.72  E-value=4.4e-17  Score=148.65  Aligned_cols=145  Identities=20%  Similarity=0.196  Sum_probs=105.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---Hh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---HA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---~~  152 (229)
                      -|+++||++.|+...   .+|+||||++.+|+.++|+||+|+||||++|+|..+..   ..+|. .++|+|+...   ..
T Consensus       537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL  610 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL  610 (790)
T ss_pred             eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence            499999999998753   37899999999999999999999999999999999999   99996 9999986542   22


Q ss_pred             hcCCCcccCcc--hhhhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPL--LLLNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~--~~~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~  198 (229)
                      |..++.++|+.  ...|++.|+.++..-.                                .-..+.+.++|++.+..+.
T Consensus       611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL  690 (790)
T KOG0056|consen  611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL  690 (790)
T ss_pred             HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence            33333344333  2367778887753211                                0112345566666666666


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+.++++|+....||.++.+.+...+..
T Consensus       691 K~P~iIlLDEATSALDT~tER~IQaaL~r  719 (790)
T KOG0056|consen  691 KAPSIILLDEATSALDTNTERAIQAALAR  719 (790)
T ss_pred             cCCcEEEEcchhhhcCCccHHHHHHHHHH
Confidence            66666777777777777888888776543

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.70  E-value=3.9e-17  Score=162.10  Aligned_cols=147  Identities=16%  Similarity=0.146  Sum_probs=114.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      ...+.++++++.|+....   +++++++.|++||+.|++|+|||||||++++|+|..+   |++|. .+.|.++..    
T Consensus       562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~  635 (885)
T KOG0059|consen  562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF  635 (885)
T ss_pred             cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence            357999999999998643   7899999999999999999999999999999999999   99997 888886532    


Q ss_pred             --HHhhcCC-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          150 --AHARRGA-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       150 --~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                        .+...|+ |+.......+|.+|.+.+..++++                           ..|+.+++.+..-++++..
T Consensus       636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig  715 (885)
T KOG0059|consen  636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG  715 (885)
T ss_pred             hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc
Confidence              3444554 444444455999999988765543                           2345566677777777777


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+.++++|+|.-++|.-.++.+.+++..
T Consensus       716 ~p~vi~LDEPstGmDP~arr~lW~ii~~  743 (885)
T KOG0059|consen  716 DPSVILLDEPSTGLDPKARRHLWDIIAR  743 (885)
T ss_pred             CCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            7777777777777777778888887764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.70  E-value=2.2e-17  Score=139.31  Aligned_cols=121  Identities=19%  Similarity=0.250  Sum_probs=76.8

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcch-----hhhHHHHHHcc
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLL-----LLNCLKNLRNQ  175 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~-----~~tv~e~l~~~  175 (229)
                      |+|++||+++|+|+||||||||+++|+|+++   |++|. .++|+++....  ..+.+.+|.+.     ..++.+|+.++
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~--~~i~~v~q~~~~~~~~~~tv~~~l~~~   75 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGW--RHIGYVPQRHEFAWDFPISVAHTVMSG   75 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhh--CcEEEecccccccCCCCccHHHHHHhc
Confidence            5788999999999999999999999999999   99997 88888764322  23444444321     25788887654


Q ss_pred             cccc-----C--------------------------CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHH
Q 027060          176 GSVY-----A--------------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  224 (229)
Q Consensus       176 ~~~~-----~--------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~  224 (229)
                      ....     .                          ..++.++.+++....++..+++++++|+|+..||...+..+.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~  155 (223)
T TIGR03771        76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL  155 (223)
T ss_pred             cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            2100     0                          01112233333444444445555555555555555567777777


Q ss_pred             Hhh
Q 027060          225 FDE  227 (229)
Q Consensus       225 l~~  227 (229)
                      +..
T Consensus       156 l~~  158 (223)
T TIGR03771       156 FIE  158 (223)
T ss_pred             HHH
Confidence            653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.69  E-value=2e-17  Score=157.80  Aligned_cols=139  Identities=14%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-E-----------ecCCCHHH
Q 027060           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-----------FDSQDPKE  149 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~-----------~~g~~~~~  149 (229)
                      +++++|+...   .+|++++ .+++|+++||+||||||||||+|+|+|+++   |+.|. .           ++|.++..
T Consensus        78 ~~~~~yg~~~---~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~  150 (590)
T PRK13409         78 EPVHRYGVNG---FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN  150 (590)
T ss_pred             CceEEecCCc---eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence            3789998631   2799999 899999999999999999999999999999   99997 4           77877543


Q ss_pred             HHh-----hcCCCcc----cCcchh--hhHHHHHHcccc------------c------cCCCCCCCCCCchhhhhhccCC
Q 027060          150 AHA-----RRGAPWT----FNPLLL--LNCLKNLRNQGS------------V------YAPSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       150 ~~~-----~~~~~~~----~~~~~~--~tv~e~l~~~~~------------~------~~~~~~~~~~~~~~~~l~~~~~  200 (229)
                      ...     ...+...    ++.+.+  .++.+++.....            +      ....++.++.+++..+.++...
T Consensus       151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~  230 (590)
T PRK13409        151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD  230 (590)
T ss_pred             HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            211     1112211    222211  367776643210            0      0112233444555555555555


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++++|||+..||...+..+.+++..
T Consensus       231 p~lllLDEPts~LD~~~~~~l~~~i~~  257 (590)
T PRK13409        231 ADFYFFDEPTSYLDIRQRLNVARLIRE  257 (590)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            555666666666665567777776654

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.5e-16  Score=128.08  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=92.9

Q ss_pred             CeEEEeeeeEEcCcc---ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec--CC--C-
Q 027060           76 PVVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--SQ--D-  146 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~---~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~--g~--~-  146 (229)
                      ..|.++|++|+|--.   .-.+.+++++||+++.||++++-||+|+|||||||+|.+.+.   |++|. .+.  |.  + 
T Consensus         3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl   79 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDL   79 (235)
T ss_pred             ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhh
Confidence            468999999998421   124568999999999999999999999999999999999999   99996 433  22  1 


Q ss_pred             ----HHH--HHhhcCCCcccCcchh---hhHHHHHHcc-------------------------cccc---CCCCCCCCCC
Q 027060          147 ----PKE--AHARRGAPWTFNPLLL---LNCLKNLRNQ-------------------------GSVY---APSFDHGVGD  189 (229)
Q Consensus       147 ----~~~--~~~~~~~~~~~~~~~~---~tv~e~l~~~-------------------------~~~~---~~~~~~~~~~  189 (229)
                          +.+  ..++..++++.|+...   .+.+|-++.+                         .+++   -..|+.+..+
T Consensus        80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ  159 (235)
T COG4778          80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ  159 (235)
T ss_pred             hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence                111  1122233443333221   2222222221                         1111   1134455555


Q ss_pred             chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      ++..+..+...-.||++|+|+.-||.-+++-+.++++++
T Consensus       160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~  198 (235)
T COG4778         160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA  198 (235)
T ss_pred             ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence            555555554455555555555555555788888888764

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.68  E-value=1.7e-17  Score=142.44  Aligned_cols=135  Identities=15%  Similarity=0.174  Sum_probs=103.1

Q ss_pred             eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC---------HHHHH
Q 027060           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD---------PKEAH  151 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~---------~~~~~  151 (229)
                      |+.+.+|+..    +  +++|.++...+++|-|++|||||||+|+|+|+++   |+.|. .++|+.         +....
T Consensus         5 ~~~~~lG~~~----l--~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~   75 (352)
T COG4148           5 NFRQRLGNFA----L--DANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK   75 (352)
T ss_pred             ehhhhcCceE----E--EEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence            4566777653    4  8899999878999999999999999999999999   99997 888863         12233


Q ss_pred             hhcCCCcccCc---chhhhHHHHHHccccccC---------------------CCCCCCCCCchhhhhhccCCccEEEec
Q 027060          152 ARRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------PSFDHGVGDPVEDDILVGLQHKVVIVD  207 (229)
Q Consensus       152 ~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d  207 (229)
                      +++  +++||+   ++.+||..|+.|+.....                     ...+.+.+|+++...++...+++|++|
T Consensus        76 Rri--GYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD  153 (352)
T COG4148          76 RRI--GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD  153 (352)
T ss_pred             hee--eeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence            444  445554   455999999999865431                     123456778888878877888888888


Q ss_pred             CCeeeecccCHHHHHHHHhh
Q 027060          208 GNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       208 ~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+.-||+|..+++.-+++.
T Consensus       154 EPLaSLD~~RK~EilpylER  173 (352)
T COG4148         154 EPLASLDLPRKREILPYLER  173 (352)
T ss_pred             CchhhcccchhhHHHHHHHH
Confidence            88888888888888877653

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.68  E-value=6.7e-17  Score=155.05  Aligned_cols=129  Identities=16%  Similarity=0.206  Sum_probs=85.5

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHHHHhhcCCCcccCc---chhhh
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKEAHARRGAPWTFNP---LLLLN  167 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~~~~~~~~~~~~~~---~~~~t  167 (229)
                      .+|+|+|+++++||+++|+|||||||||||++|+|..+   +.   +|+ .++|.++.....+..+.+.+|.   .+.+|
T Consensus        39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT  115 (617)
T TIGR00955        39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT  115 (617)
T ss_pred             ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence            38999999999999999999999999999999999887   64   686 8888765322222233333333   34479


Q ss_pred             HHHHHHccccccCCC-CC------------------CCCCCchh-----hhhhccCCccE-----EEecCCeeeeccc--
Q 027060          168 CLKNLRNQGSVYAPS-FD------------------HGVGDPVE-----DDILVGLQHKV-----VIVDGNYLFLDGG--  216 (229)
Q Consensus       168 v~e~l~~~~~~~~~~-~~------------------~~~~~~~~-----~~l~~~~~~rv-----Li~d~~~LlLDEP--  216 (229)
                      |.||+.++.....+. ..                  ......+.     ..++.|+++|+     |+.+|++++||||  
T Consensus       116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts  195 (617)
T TIGR00955       116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS  195 (617)
T ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence            999998765433211 00                  00111111     23666666666     6677777777777  


Q ss_pred             -----CHHHHHHHHh
Q 027060          217 -----VWKDVSSMFD  226 (229)
Q Consensus       217 -----~~~~l~~~l~  226 (229)
                           ....+.+.+.
T Consensus       196 gLD~~~~~~l~~~L~  210 (617)
T TIGR00955       196 GLDSFMAYSVVQVLK  210 (617)
T ss_pred             chhHHHHHHHHHHHH
Confidence                 3555555554

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.68  E-value=3.8e-17  Score=133.53  Aligned_cols=120  Identities=18%  Similarity=0.092  Sum_probs=81.4

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcchhhhHHHHHH
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLR  173 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~  173 (229)
                      .+|+|+||+|.+|++++|+||||||||||||+|.       +++|. .+.+.....  .+..+.+.++    ...++.+.
T Consensus         9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~--~~~~~~~~~q----~~~l~~~~   75 (176)
T cd03238           9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKF--SRNKLIFIDQ----LQFLIDVG   75 (176)
T ss_pred             eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCccccc--ccccEEEEhH----HHHHHHcC
Confidence            4799999999999999999999999999999884       24675 666552211  1112223222    23444443


Q ss_pred             cccc-cc--CCCCCCCCCCchhhhhhccCC--ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          174 NQGS-VY--APSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       174 ~~~~-~~--~~~~~~~~~~~~~~~l~~~~~--~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +... ..  ...++.++.+++..+.++..+  ++++++|+|+..||...++.+.+++..
T Consensus        76 L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~  134 (176)
T cd03238          76 LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG  134 (176)
T ss_pred             CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            3221 11  223455667777777777777  888888888888888888888877754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.67  E-value=1.2e-16  Score=165.83  Aligned_cols=145  Identities=17%  Similarity=0.159  Sum_probs=96.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++..  -.+|+|+||+|++||.+||+|++|||||||+++|.|++.    .+|. .++|.++..   ...
T Consensus      1217 ~I~f~nVs~~Y~~~~--~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred             eEEEEEEEEEeCCCC--cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHH
Confidence            599999999997532  138999999999999999999999999999999999975    5786 999987532   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccC
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~  199 (229)
                      |..+.+.+|.+.+  -|+++||.......                               ...++.|+.|++..++++..
T Consensus      1291 R~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271      1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred             HhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence            3344444554443  58999996432100                               00123344444444445555


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++||++||++.-+|..+.+.+.+.+..
T Consensus      1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271      1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            5555555555555555556666666553

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03073 ABC transporter F family; Provisional

Probab=99.66  E-value=1.4e-16  Score=154.77  Aligned_cols=62  Identities=15%  Similarity=0.142  Sum_probs=53.0

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ..+|+++|+++.|++..    +|+|+||+|.+|+++||||+||||||||||+|+|......|.+|.
T Consensus       175 ~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~  236 (718)
T PLN03073        175 IKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ  236 (718)
T ss_pred             ceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE
Confidence            34799999999998765    899999999999999999999999999999999964101267775

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.65  E-value=2.3e-16  Score=164.02  Aligned_cols=134  Identities=11%  Similarity=0.105  Sum_probs=91.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG  155 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~  155 (229)
                      .|+++|+++.|++...  .+|+|+||+|++|++++|+||||||||||+++|+|+++   |++|. .++|.          
T Consensus       636 ~i~~~~~~~~~~~~~~--~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~----------  700 (1522)
T TIGR00957       636 SITVHNATFTWARDLP--PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGS----------  700 (1522)
T ss_pred             cEEEEEeEEEcCCCCC--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECCE----------
Confidence            6999999999975311  27999999999999999999999999999999999999   99997 66651          


Q ss_pred             CCcccCcch--hhhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccCCcc
Q 027060          156 APWTFNPLL--LLNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       156 ~~~~~~~~~--~~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      +.+.+|.+.  ..|++||+.++....                               ....+.|+.+|+..++++..+++
T Consensus       701 i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~  780 (1522)
T TIGR00957       701 VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD  780 (1522)
T ss_pred             EEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            222333222  257888887653211                               00122334444444455555555


Q ss_pred             EEEecCCeeeecccCHHHHHHHH
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMF  225 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l  225 (229)
                      ++++|+++..||....+.+.+.+
T Consensus       781 illLDEp~saLD~~~~~~i~~~l  803 (1522)
T TIGR00957       781 IYLFDDPLSAVDAHVGKHIFEHV  803 (1522)
T ss_pred             EEEEcCCccccCHHHHHHHHHHH
Confidence            55555555555555666666554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.65  E-value=1.5e-16  Score=164.10  Aligned_cols=99  Identities=16%  Similarity=0.092  Sum_probs=71.7

Q ss_pred             eEEEeeeeEEcCccc---------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~---------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .+..+||++.++...         .+..+|+|+|+.+++|++++|+|||||||||||++|+|... ..+.+|. .++|.+
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence            588999998874211         12348999999999999999999999999999999999865 1125786 888876


Q ss_pred             HHHHHhhcCCCcccCc---chhhhHHHHHHccc
Q 027060          147 PKEAHARRGAPWTFNP---LLLLNCLKNLRNQG  176 (229)
Q Consensus       147 ~~~~~~~~~~~~~~~~---~~~~tv~e~l~~~~  176 (229)
                      ......+..+++.+|.   .+.+||.|++.+..
T Consensus       946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a  978 (1470)
T PLN03140        946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSA  978 (1470)
T ss_pred             CChHHhhhheEEEccccccCCCCcHHHHHHHHH
Confidence            5332222223344433   34489999998754

>PLN03140 ABC transporter G family member; Provisional

Probab=99.62  E-value=3.4e-16  Score=161.56  Aligned_cols=81  Identities=16%  Similarity=0.299  Sum_probs=63.9

Q ss_pred             cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHHHHhhcCCCcccCc---chhh
Q 027060           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKEAHARRGAPWTFNP---LLLL  166 (229)
Q Consensus        94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~~~~~~~~~~~~~~---~~~~  166 (229)
                      ..+|+|+|+.|++|++++|+||||||||||||+|+|+++   |+   +|+ .++|++......+..+.+.+|.   .+.+
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence            448999999999999999999999999999999999998   87   897 8899876443223334444443   3448


Q ss_pred             hHHHHHHcccc
Q 027060          167 NCLKNLRNQGS  177 (229)
Q Consensus       167 tv~e~l~~~~~  177 (229)
                      ||.|++.+...
T Consensus       255 TV~EtL~f~a~  265 (1470)
T PLN03140        255 TVKETLDFSAR  265 (1470)
T ss_pred             cHHHHHHHHHH
Confidence            99999988643

>PLN03232 ABC transporter C family member; Provisional

Probab=99.62  E-value=7.1e-16  Score=160.16  Aligned_cols=88  Identities=15%  Similarity=0.196  Sum_probs=66.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGA  156 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~  156 (229)
                      .|+++|+++.|++.. ...+|+|+||+|++|+.++|+|++|||||||+++|+|+++   |.+|....        .+..+
T Consensus       614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~--------~~~~I  681 (1495)
T PLN03232        614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV--------IRGSV  681 (1495)
T ss_pred             cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE--------ecCcE
Confidence            599999999997531 1227999999999999999999999999999999999999   98874210        11123


Q ss_pred             CcccCcchh--hhHHHHHHccc
Q 027060          157 PWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       157 ~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      .+..|.+.+  .|++||+.++.
T Consensus       682 ayv~Q~p~Lf~gTIreNI~fg~  703 (1495)
T PLN03232        682 AYVPQVSWIFNATVRENILFGS  703 (1495)
T ss_pred             EEEcCccccccccHHHHhhcCC
Confidence            444444332  68888888764

>PLN03130 ABC transporter C family member; Provisional

Probab=99.61  E-value=1.4e-15  Score=158.68  Aligned_cols=87  Identities=17%  Similarity=0.241  Sum_probs=68.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCCCHHHHHhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQDPKEAHARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~~~~~~~~~~  154 (229)
                      .|+++|+++.|++.. ...+|+|+||+|++|+.++|+||+|||||||+++|+|+++   |.+ |. .+.+          
T Consensus       614 ~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~----------  679 (1622)
T PLN03130        614 AISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRG----------  679 (1622)
T ss_pred             ceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcC----------
Confidence            599999999997531 1127999999999999999999999999999999999999   999 76 4322          


Q ss_pred             CCCcccCcchh--hhHHHHHHcccc
Q 027060          155 GAPWTFNPLLL--LNCLKNLRNQGS  177 (229)
Q Consensus       155 ~~~~~~~~~~~--~tv~e~l~~~~~  177 (229)
                      .+.+..|.+.+  .|++||+.++..
T Consensus       680 ~Iayv~Q~p~LfngTIreNI~fg~~  704 (1622)
T PLN03130        680 TVAYVPQVSWIFNATVRDNILFGSP  704 (1622)
T ss_pred             eEEEEcCccccCCCCHHHHHhCCCc
Confidence            23444444332  688888887643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.61  E-value=1.1e-15  Score=158.63  Aligned_cols=116  Identities=14%  Similarity=0.157  Sum_probs=81.1

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcch--hhhHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLL--LLNCLKNL  172 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~--~~tv~e~l  172 (229)
                      +|+|+||+|++|++++|+|||||||||||++|+|+++   |++|. .++|.          +.+.+|.+.  ..|++||+
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g~----------iayv~Q~~~l~~~Ti~eNI  507 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSGR----------ISFSPQTSWIMPGTIKDNI  507 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCE----------EEEEeCCCccCCccHHHHH
Confidence            7999999999999999999999999999999999999   99997 77662          222222221  14777887


Q ss_pred             Hcccccc-------------------------------CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHH
Q 027060          173 RNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  221 (229)
Q Consensus       173 ~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l  221 (229)
                      .++....                               ...++.|+++|+..++++..+++++++|+++..||....+++
T Consensus       508 ~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i  587 (1490)
T TIGR01271       508 IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI  587 (1490)
T ss_pred             HhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            7653211                               012233445555555556666666777777777776677777


Q ss_pred             HHH
Q 027060          222 SSM  224 (229)
Q Consensus       222 ~~~  224 (229)
                      .+.
T Consensus       588 ~~~  590 (1490)
T TIGR01271       588 FES  590 (1490)
T ss_pred             HHH
Confidence            753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.60  E-value=6.6e-15  Score=131.97  Aligned_cols=154  Identities=17%  Similarity=0.226  Sum_probs=100.3

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHH--
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPK--  148 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~--  148 (229)
                      .+++++++|++..|........++++|||+|.+||.++|||.+|||||-..+.|+++++..  ..-+|. .++|+++.  
T Consensus         3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            3578999999999985545566899999999999999999999999999999999999741  123565 88998742  


Q ss_pred             ---HHHhhcC--CCcccCcch-----hhhHHHHHHccccccCCC-------------------CCCCCCCchhhhhhccC
Q 027060          149 ---EAHARRG--APWTFNPLL-----LLNCLKNLRNQGSVYAPS-------------------FDHGVGDPVEDDILVGL  199 (229)
Q Consensus       149 ---~~~~~~~--~~~~~~~~~-----~~tv~e~l~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~  199 (229)
                         ..+.-+|  +.+.||.+.     +.|+-+.+......+...                   -.....+..+.+++.|+
T Consensus        83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq  162 (534)
T COG4172          83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ  162 (534)
T ss_pred             CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence               2233333  577777653     355555554432222110                   00111233344455555


Q ss_pred             CccE-----EEecCCeeeeccc-------CHHHHHHHHhh
Q 027060          200 QHKV-----VIVDGNYLFLDGG-------VWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rv-----Li~d~~~LlLDEP-------~~~~l~~~l~~  227 (229)
                      .+||     |+.+|++|+.|||       .+.++.+++..
T Consensus       163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~  202 (534)
T COG4172         163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE  202 (534)
T ss_pred             hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHH
Confidence            5555     4455555555555       47777777654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.57  E-value=3.8e-15  Score=153.73  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=62.1

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cCCCCce-EecCCCHHHHH--hhcCCCcccCc---chhhh
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQDPKEAH--ARRGAPWTFNP---LLLLN  167 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~-~~p~~G~-~~~g~~~~~~~--~~~~~~~~~~~---~~~~t  167 (229)
                      .+|+|+|+.+++||+++|+||||||||||||+|+|++.. ..|.+|. .++|.++....  .+..+.+.+|.   .+.+|
T Consensus        75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT  154 (1394)
T TIGR00956        75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT  154 (1394)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence            489999999999999999999999999999999998621 1168897 89998764321  22234444444   33489


Q ss_pred             HHHHHHccc
Q 027060          168 CLKNLRNQG  176 (229)
Q Consensus       168 v~e~l~~~~  176 (229)
                      |.|++.+..
T Consensus       155 V~E~l~f~~  163 (1394)
T TIGR00956       155 VGETLDFAA  163 (1394)
T ss_pred             HHHHHHHHH
Confidence            999998754

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.57  E-value=1.3e-14  Score=133.08  Aligned_cols=92  Identities=20%  Similarity=0.247  Sum_probs=72.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      .+.++++++.=++..  ..+++++||++.+||.+|||||+|||||||.|+|.|..+   |.+|. .+||-+++.     .
T Consensus       334 ~L~Ve~l~~~PPg~~--~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l  408 (580)
T COG4618         334 ALSVERLTAAPPGQK--KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL  408 (580)
T ss_pred             eeeEeeeeecCCCCC--CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence            699999998665543  347889999999999999999999999999999999999   99996 999986533     2


Q ss_pred             HhhcCCCcccCcchh--hhHHHHHHcc
Q 027060          151 HARRGAPWTFNPLLL--LNCLKNLRNQ  175 (229)
Q Consensus       151 ~~~~~~~~~~~~~~~--~tv~e~l~~~  175 (229)
                      -+.+|  +.+|.-.+  -|+.||+.-.
T Consensus       409 G~hiG--YLPQdVeLF~GTIaeNIaRf  433 (580)
T COG4618         409 GRHIG--YLPQDVELFDGTIAENIARF  433 (580)
T ss_pred             ccccC--cCcccceecCCcHHHHHHhc
Confidence            33344  44443332  5899999743

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.5e-14  Score=130.09  Aligned_cols=95  Identities=20%  Similarity=0.215  Sum_probs=75.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .+.+.+|++.|+...   .+|+++||+++.|+.++|+|++|+||||++++|..++.   +.+|. .++|+++..   ...
T Consensus       262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl  335 (497)
T COG5265         262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL  335 (497)
T ss_pred             eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence            378999999998753   27889999999999999999999999999999999999   99997 999998643   233


Q ss_pred             hcCCCcccCcc--hhhhHHHHHHcccc
Q 027060          153 RRGAPWTFNPL--LLLNCLKNLRNQGS  177 (229)
Q Consensus       153 ~~~~~~~~~~~--~~~tv~e~l~~~~~  177 (229)
                      +..++.++|+-  ...|...|+.++..
T Consensus       336 R~aIg~VPQDtvLFNDti~yni~ygr~  362 (497)
T COG5265         336 RRAIGIVPQDTVLFNDTIAYNIKYGRP  362 (497)
T ss_pred             HHHhCcCcccceehhhhHHHHHhccCc
Confidence            33344444443  33688888887643

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.55  E-value=1e-14  Score=134.37  Aligned_cols=146  Identities=18%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhh
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR  153 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~  153 (229)
                      +-|+|.+.|+++.|.+..   .++++++|-|..++.+++|||||||||||||+++|.+.   |..|....+......+..
T Consensus       386 p~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~~~~y~  459 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNKLPRYN  459 (614)
T ss_pred             CCCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccccchhhh
Confidence            467999999999998763   37889999999999999999999999999999999999   999963322211111111


Q ss_pred             cCCCcccCcchhhhHHHHHHcccc--------------------c---cCCCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060          154 RGAPWTFNPLLLLNCLKNLRNQGS--------------------V---YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  210 (229)
Q Consensus       154 ~~~~~~~~~~~~~tv~e~l~~~~~--------------------~---~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~  210 (229)
                      +.  ..++.....+..+++.-...                    .   .....+.++..++.-.......+.+|++|+|+
T Consensus       460 Qh--~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt  537 (614)
T KOG0927|consen  460 QH--LAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT  537 (614)
T ss_pred             hh--hHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence            11  01111111333333321100                    0   00112234444544444555566667777777


Q ss_pred             eeecccCHHHHHHHHhh
Q 027060          211 LFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       211 LlLDEP~~~~l~~~l~~  227 (229)
                      ..||-|+...+.+.|.+
T Consensus       538 nhLDi~tid~laeaiNe  554 (614)
T KOG0927|consen  538 NHLDIETIDALAEAINE  554 (614)
T ss_pred             cCCCchhHHHHHHHHhc
Confidence            77777777777776654

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=1.9e-14  Score=137.90  Aligned_cols=150  Identities=17%  Similarity=0.209  Sum_probs=101.5

Q ss_pred             eEEEeeeeEEcCccc-cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hh
Q 027060           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~-~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~  152 (229)
                      -+..++++....++. ....+|++||..+++||+.||+||+||||||||++|+|....-...+|. .++|+.....  +.
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~  104 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK  104 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence            366777777665532 1234799999999999999999999999999999999988621236786 8999654333  33


Q ss_pred             hcCC-CcccCcchhhhHHHHHHccccccCCCC-C-----------------CCCCCchh-----hhhhccCCccE-----
Q 027060          153 RRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSF-D-----------------HGVGDPVE-----DDILVGLQHKV-----  203 (229)
Q Consensus       153 ~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~-~-----------------~~~~~~~~-----~~l~~~~~~rv-----  203 (229)
                      ..++ .+.....+.+||.|.+.+...+..+.- +                 ....+...     ..++.|++.|+     
T Consensus       105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E  184 (613)
T KOG0061|consen  105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE  184 (613)
T ss_pred             eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence            3343 333344556999999998776654431 1                 00111111     24667788888     


Q ss_pred             EEecCCeeeecccC-------HHHHHHHHh
Q 027060          204 VIVDGNYLFLDGGV-------WKDVSSMFD  226 (229)
Q Consensus       204 Li~d~~~LlLDEP~-------~~~l~~~l~  226 (229)
                      |+.||.+|+||||+       ..++.+++.
T Consensus       185 ll~~P~iLflDEPTSGLDS~sA~~vv~~Lk  214 (613)
T KOG0061|consen  185 LLTDPSILFLDEPTSGLDSFSALQVVQLLK  214 (613)
T ss_pred             HHcCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence            88889999999985       555555444

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.54  E-value=1.9e-15  Score=134.58  Aligned_cols=113  Identities=19%  Similarity=0.221  Sum_probs=70.7

Q ss_pred             EEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcCCCcccCcc---hhhhHHHHHHccccccC------
Q 027060          112 LAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA------  180 (229)
Q Consensus       112 IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~------  180 (229)
                      |+||||||||||+++|+|+++   |++|. .++|+++... ..+..+.+.+|.+   +.+|+.+|+.++.....      
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~   77 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI   77 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence            689999999999999999999   99997 8888754221 1223444445443   34799999987532110      


Q ss_pred             ---------------------CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          181 ---------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       181 ---------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                                           ..++.++.+++..+.++..+++++++|+|+..||...+..+++++..
T Consensus        78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~  145 (325)
T TIGR01187        78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT  145 (325)
T ss_pred             HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence                                 01122333444444444455555555555555555567777776653

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.54  E-value=4.1e-14  Score=126.61  Aligned_cols=140  Identities=18%  Similarity=0.171  Sum_probs=92.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~  153 (229)
                      -|+++||.+.|.+..   ..+..||++|++||++.|+|.||||||||+++|+|+.+   |++|+ +++|+.+..  ....
T Consensus       322 ~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~ledY  395 (546)
T COG4615         322 TLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLEDY  395 (546)
T ss_pred             ceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHHH
Confidence            599999999998753   36889999999999999999999999999999999999   99997 899985321  1011


Q ss_pred             cC-CCcccCcchh----------------hhHHHHHHcccc-------ccCCCCCCCCCCchhhhhhccCCccEEEecCC
Q 027060          154 RG-APWTFNPLLL----------------LNCLKNLRNQGS-------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  209 (229)
Q Consensus       154 ~~-~~~~~~~~~~----------------~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~  209 (229)
                      ++ +.-+|.++.+                ..-++.+.+...       +..-..+.+++.|.+..+++.+...|+++|++
T Consensus       396 R~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW  475 (546)
T COG4615         396 RKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW  475 (546)
T ss_pred             HHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence            11 1111111110                111222222111       11112345666777777777777788888887


Q ss_pred             eeeecccCHHHHH
Q 027060          210 YLFLDGGVWKDVS  222 (229)
Q Consensus       210 ~LlLDEP~~~~l~  222 (229)
                      -.=-|+-.++.+.
T Consensus       476 AADQDPaFRR~FY  488 (546)
T COG4615         476 AADQDPAFRREFY  488 (546)
T ss_pred             hccCChHHHHHHH
Confidence            7766665555443

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.53  E-value=1.8e-14  Score=145.87  Aligned_cols=146  Identities=18%  Similarity=0.215  Sum_probs=104.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----HHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-----KEA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-----~~~  150 (229)
                      -|+++|++.+|.... + .+|+||||+|++||.|||||..|||||||+.+|-++..   |.+|. .+||.|+     .+.
T Consensus      1138 ~I~f~~~~~RYrp~l-p-~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNL-P-LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred             eEEEEEeEEEeCCCC-c-chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence            599999999998752 2 38999999999999999999999999999999999999   99997 9999874     445


Q ss_pred             HhhcCC-CcccCcch-----------------hhhHHHHHHcc-------cccc------CCCCCCCCCCchhhhhhccC
Q 027060          151 HARRGA-PWTFNPLL-----------------LLNCLKNLRNQ-------GSVY------APSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~-----------------~~tv~e~l~~~-------~~~~------~~~~~~~~~~~~~~~l~~~~  199 (229)
                      +.+.++ ||.+..+.                 .+.++|...+.       ..+.      +..++.|+.|.+..++++..
T Consensus      1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred             HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence            556664 55543221                 12222222211       1111      12345566666677777777


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +.|||++||.+.-.|..+-..+.+.+.+
T Consensus      1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred             cCCEEEEecccccCChHHHHHHHHHHHH
Confidence            8888888888888888765555555543

>PTZ00243 ABC transporter; Provisional

Probab=99.48  E-value=4.1e-14  Score=147.40  Aligned_cols=68  Identities=13%  Similarity=0.118  Sum_probs=53.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcch--hhhHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLL--LLNCLKNL  172 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~--~~tv~e~l  172 (229)
                      +|+|+||+|++|++++|+||||||||||+++|+|+++   |++|. .+.+        +  +.+.+|.+.  ..|+.||+
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~~--------~--i~yv~Q~~~l~~~Tv~enI  741 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAER--------S--IAYVPQQAWIMNATVRGNI  741 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC--------e--EEEEeCCCccCCCcHHHHH
Confidence            7999999999999999999999999999999999999   99997 4321        2  223333221  25788888


Q ss_pred             Hccc
Q 027060          173 RNQG  176 (229)
Q Consensus       173 ~~~~  176 (229)
                      .++.
T Consensus       742 ~~~~  745 (1560)
T PTZ00243        742 LFFD  745 (1560)
T ss_pred             HcCC
Confidence            7753

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=99.46  E-value=1.4e-13  Score=115.43  Aligned_cols=126  Identities=47%  Similarity=0.783  Sum_probs=101.9

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--------------cCCCCce-EecC-----CCHHHHHhhcCCCcccCcc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINK--------------IWPQKAS-SFDS-----QDPKEAHARRGAPWTFNPL  163 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--------------~~p~~G~-~~~g-----~~~~~~~~~~~~~~~~~~~  163 (229)
                      -+..+.+|++|+.|+||||++..+..--+.              .+|..|. +...     +++...+.++|.++.|+..
T Consensus       116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~  195 (323)
T KOG2702|consen  116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN  195 (323)
T ss_pred             ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence            345688999999999999999998873221              0122221 1000     1466678899999999998


Q ss_pred             hhhhHHHHHH--ccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060          164 LLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  229 (229)
Q Consensus       164 ~~~tv~e~l~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~  229 (229)
                      .+++...-+.  --..++.|.|+++.++.+...+.+....||+|+|++||+||+|+|+.+.++++.+|
T Consensus       196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~  263 (323)
T KOG2702|consen  196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKY  263 (323)
T ss_pred             HHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhhe
Confidence            8888888777  45678899999999999999999999999999999999999999999999999875

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.43  E-value=5.4e-14  Score=116.82  Aligned_cols=126  Identities=14%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce----------EecCCCHHHHHhhcCCCcccCcchh--
Q 027060           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----------SFDSQDPKEAHARRGAPWTFNPLLL--  165 (229)
Q Consensus        98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~----------~~~g~~~~~~~~~~~~~~~~~~~~~--  165 (229)
                      +++++++.+| +++|+||||||||||+++|+|++.   +..|.          .+.|++.........+...||++..  
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~   89 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY   89 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence            4789999999 999999999999999999999987   65433          2333332111111223344443322  


Q ss_pred             -----hhHHHHHHccccccC--CCCCCCCCCchhhhhhcc----CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          166 -----LNCLKNLRNQGSVYA--PSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       166 -----~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~----~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                           ..+.+.+........  ..++.++.+++..+.++.    ..++++++|+|...||......+.+++..
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~  162 (197)
T cd03278          90 SIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKE  162 (197)
T ss_pred             eEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                 122232322111111  122334444444444332    23456666666666666667777777654

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.42  E-value=3.4e-13  Score=118.18  Aligned_cols=124  Identities=23%  Similarity=0.360  Sum_probs=88.6

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee---cCCCH-HHHHh------hcCCCcccCcchhhhHHHHHH
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQDP-KEAHA------RRGAPWTFNPLLLLNCLKNLR  173 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~---~g~~~-~~~~~------~~~~~~~~~~~~~~tv~e~l~  173 (229)
                      +.-.++||+|+||||||||+++|.+++.. .|.+|. .+   +|... .....      +.+.+..++...+...+..+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence            34579999999999999999999999852 234553 33   44321 11112      233444455555567777777


Q ss_pred             cccc-ccCCCCCCCCCCchhhhhhccCCccEEEecCCeee------ecccCHHHHHHHHhhhC
Q 027060          174 NQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF------LDGGVWKDVSSMFDEKW  229 (229)
Q Consensus       174 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~Ll------LDEP~~~~l~~~l~~~~  229 (229)
                      .+.. +..|.|++..+++..........++|+|+|+.+++      +|++.|..+.+++|.+|
T Consensus       139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~I  201 (290)
T TIGR00554       139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI  201 (290)
T ss_pred             CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEE
Confidence            6664 77899999888887766555678999999999888      56778999999998764

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.41  E-value=4.9e-13  Score=112.96  Aligned_cols=118  Identities=24%  Similarity=0.296  Sum_probs=84.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCC--CCce-E---ecCCCHH-HHHh------hcCCCcccCcchhhhHHHHHHcc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-S---FDSQDPK-EAHA------RRGAPWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~---~~g~~~~-~~~~------~~~~~~~~~~~~~~tv~e~l~~~  175 (229)
                      ++||.|+||||||||++.|.+++.   +  .++. .   .+|.-.. ....      +.+.+..++...+...++.+..+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~---~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g   77 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS---RWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSG   77 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh---hcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCC
Confidence            589999999999999999999996   4  3332 2   2544211 1111      23455555555567777777773


Q ss_pred             -ccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeec-ccCHHHHHHHHhhhC
Q 027060          176 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD-GGVWKDVSSMFDEKW  229 (229)
Q Consensus       176 -~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLD-EP~~~~l~~~l~~~~  229 (229)
                       .....|.|++..+++...........+|+|+|+.+++.| +++|..+++++|.+|
T Consensus        78 ~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~i  133 (220)
T cd02025          78 KKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSI  133 (220)
T ss_pred             CCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEE
Confidence             567788899888877666554456789999999999988 467999999988764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.39  E-value=1.2e-12  Score=106.06  Aligned_cols=59  Identities=31%  Similarity=0.394  Sum_probs=50.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      ++++++|+..-        .|-.+|.++..||++-+|||||||||||+-.++|++    |.+|+ .+.|.++
T Consensus         3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l   62 (248)
T COG4138           3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPL   62 (248)
T ss_pred             eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcch
Confidence            67888887543        355889999999999999999999999999999988    57886 8999875

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.38  E-value=7.4e-13  Score=134.39  Aligned_cols=135  Identities=13%  Similarity=0.138  Sum_probs=99.8

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA  152 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~  152 (229)
                      ....++++|.++..+.. .+...|+||||+|++|+.+||+|+-|||||+||.+|.|.++   ..+|. .+.|.       
T Consensus       515 ~~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-------  583 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-------  583 (1381)
T ss_pred             CCceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-------
Confidence            44579999999998763 33337999999999999999999999999999999999999   99997 77764       


Q ss_pred             hcCCCcccCcc--hhhhHHHHHHccccccCC-------------------------------CCCCCCCCchhhhhhccC
Q 027060          153 RRGAPWTFNPL--LLLNCLKNLRNQGSVYAP-------------------------------SFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       153 ~~~~~~~~~~~--~~~tv~e~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~  199 (229)
                         +.+..|.+  ..-|++||+.|+..+...                               ..+.|+++|+..++++-+
T Consensus       584 ---iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~  660 (1381)
T KOG0054|consen  584 ---VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ  660 (1381)
T ss_pred             ---EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc
Confidence               33333333  226888999887654311                               123455666666666777


Q ss_pred             CccEEEecCCeeeecccCHHHHH
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVS  222 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~  222 (229)
                      ++++.++|-++--+|...-+.+.
T Consensus       661 ~adIYLLDDplSAVDahvg~~if  683 (1381)
T KOG0054|consen  661 DADIYLLDDPLSAVDAHVGKHIF  683 (1381)
T ss_pred             cCCEEEEcCcchhhhHhhhHHHH
Confidence            77777777777777776555544

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.36  E-value=5.1e-13  Score=123.30  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=49.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.++++++.|.+..    .++|++|++.+|+.+||+|+|||||||+|++|.|-..
T Consensus        75 dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~  126 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV  126 (614)
T ss_pred             cceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC
Confidence            599999999998876    8899999999999999999999999999999999876

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.36  E-value=4.9e-13  Score=113.75  Aligned_cols=44  Identities=18%  Similarity=0.225  Sum_probs=35.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      |+++|. |.|++..    ++++++     |++++|+||||||||||+++|++++
T Consensus         4 i~~~nf-ksy~~~~----~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l   47 (243)
T cd03272           4 VIIQGF-KSYKDQT----VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVL   47 (243)
T ss_pred             EEEeCc-cCcccCc----ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            667776 4677654    666665     7899999999999999999998553

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.35  E-value=9e-13  Score=111.62  Aligned_cols=30  Identities=27%  Similarity=0.436  Sum_probs=28.6

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLl  124 (229)
                      .+|+++||+|++||++||+|+||||||||+
T Consensus         9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             hccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            389999999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.35  E-value=4.2e-12  Score=105.30  Aligned_cols=147  Identities=14%  Similarity=-0.006  Sum_probs=89.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      .-.|++.++.+.|.... +  ++-|+|++++.|....++|.||||||||||+|.|-.-   ...|. .+.|.+.-.    
T Consensus        11 ~~aievsgl~f~y~~~d-P--~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l   84 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSD-P--IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSL   84 (291)
T ss_pred             cceEEEeccEEecccCC-c--eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccc
Confidence            34699999999998753 3  5669999999999999999999999999999999543   33343 555542100    


Q ss_pred             ------------HHhhcCCCcccCcchhhhHHHHHHcc------------------ccccCCCCCCCCCCchhhhhhccC
Q 027060          150 ------------AHARRGAPWTFNPLLLLNCLKNLRNQ------------------GSVYAPSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       150 ------------~~~~~~~~~~~~~~~~~tv~e~l~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~  199 (229)
                                  -....++.........+++.+.+.-.                  .+......+.++..++...+-+..
T Consensus        85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~  164 (291)
T KOG2355|consen   85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK  164 (291)
T ss_pred             cccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc
Confidence                        00111111100111113333322211                  111111223445555554444445


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .=+||++|+-++=||--.+..+.+++.+
T Consensus       165 PfkVLLLDEVTVDLDVlARadLLeFlke  192 (291)
T KOG2355|consen  165 PFKVLLLDEVTVDLDVLARADLLEFLKE  192 (291)
T ss_pred             ceeEEEeeeeEeehHHHHHHHHHHHHHH
Confidence            5677888888888888888888888764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.35  E-value=4.2e-12  Score=119.88  Aligned_cols=147  Identities=14%  Similarity=0.036  Sum_probs=101.8

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec-CCCH-----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQDP-----  147 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~-g~~~-----  147 (229)
                      ...|.++|++..-++..   ..+++++|+|++|+.+.|.|+||||||||+|+|+|+-+   -.+|. .+- +.+.     
T Consensus       390 ~~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~~~~~lflpQ  463 (604)
T COG4178         390 DHGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPADSALLFLPQ  463 (604)
T ss_pred             cceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCCCCceEEecC
Confidence            35799999999988753   37899999999999999999999999999999999987   55664 322 2210     


Q ss_pred             ------HHHHhhcCCCcccC---cchhhhHHHHHHccccc--------cCCCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060          148 ------KEAHARRGAPWTFN---PLLLLNCLKNLRNQGSV--------YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  210 (229)
Q Consensus       148 ------~~~~~~~~~~~~~~---~~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~  210 (229)
                            -..+....+|....   +..+..++..+.++...        +....+.+..+++.-+..+..+++++++||-+
T Consensus       464 ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT  543 (604)
T COG4178         464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT  543 (604)
T ss_pred             CCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence                  01122233333332   22223344333332211        11233457778877777788888999999999


Q ss_pred             eeecccCHHHHHHHHhh
Q 027060          211 LFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       211 LlLDEP~~~~l~~~l~~  227 (229)
                      --|||.....++++++.
T Consensus       544 sALDe~~e~~l~q~l~~  560 (604)
T COG4178         544 SALDEETEDRLYQLLKE  560 (604)
T ss_pred             hccChHHHHHHHHHHHh
Confidence            99999999999888875

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.31  E-value=2.8e-12  Score=128.38  Aligned_cols=140  Identities=14%  Similarity=0.065  Sum_probs=91.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~  153 (229)
                      +..-.|+.+.-..+..+..+|+||+=-+.+|-.+||+|+|||||||||++|+|-.. ....+|. .++|....+  -.++
T Consensus       787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t-~G~I~Gdi~i~G~p~~q~tF~R~  865 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT-GGYIEGDILISGFPKDQETFARV  865 (1391)
T ss_pred             eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc-cceEEeEEEECCeeCchhhhccc
Confidence            44445555444322234458999999999999999999999999999999999643 1234565 889987653  2444


Q ss_pred             cCCC-cccCcchhhhHHHHHHccccccCCCC-CC-----------------CCCCchhhh----hhccCCccE-----EE
Q 027060          154 RGAP-WTFNPLLLLNCLKNLRNQGSVYAPSF-DH-----------------GVGDPVEDD----ILVGLQHKV-----VI  205 (229)
Q Consensus       154 ~~~~-~~~~~~~~~tv~e~l~~~~~~~~~~~-~~-----------------~~~~~~~~~----l~~~~~~rv-----Li  205 (229)
                      .|+. ++....+.+||+|.|.+...+..+.- +.                 ...+.+.+.    ++..++.|+     |+
T Consensus       866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv  945 (1391)
T KOG0065|consen  866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV  945 (1391)
T ss_pred             cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence            5653 33333455999999999876654321 10                 011111111    444556666     77


Q ss_pred             ecC-CeeeecccC
Q 027060          206 VDG-NYLFLDGGV  217 (229)
Q Consensus       206 ~d~-~~LlLDEP~  217 (229)
                      .+| .+++||||+
T Consensus       946 A~P~~ilFLDEPT  958 (1391)
T KOG0065|consen  946 ANPSSILFLDEPT  958 (1391)
T ss_pred             cCCceeEEecCCC
Confidence            788 888888884

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.30  E-value=6.1e-12  Score=104.75  Aligned_cols=152  Identities=18%  Similarity=0.292  Sum_probs=100.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecCCC-----H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQD-----P  147 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g~~-----~  147 (229)
                      |+++.+.|++..+......+.+++++|+++++||+-|+||.+|||||-..|.|+|..+.-+. +... .+++-+     +
T Consensus         1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence            56789999999997766678899999999999999999999999999999999998762111 1112 333333     2


Q ss_pred             HHHHhhcC--CCcccCcchh-----hhH----HHHHHcc---cccc-----------------------------CCCCC
Q 027060          148 KEAHARRG--APWTFNPLLL-----LNC----LKNLRNQ---GSVY-----------------------------APSFD  184 (229)
Q Consensus       148 ~~~~~~~~--~~~~~~~~~~-----~tv----~e~l~~~---~~~~-----------------------------~~~~~  184 (229)
                      ...+.-+|  +.+.||.+.-     .++    .+|+-..   .+.+                             -....
T Consensus        81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT  160 (330)
T COG4170          81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT  160 (330)
T ss_pred             HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence            22222233  5667776532     222    2222110   0000                             00112


Q ss_pred             CCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       185 ~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      .+..+++..++++..++|+||.|++..-+|.-++.++..++.
T Consensus       161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs  202 (330)
T COG4170         161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLS  202 (330)
T ss_pred             cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHH
Confidence            456677777777777888888888888877778888887764

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=1.6e-11  Score=113.00  Aligned_cols=49  Identities=22%  Similarity=0.266  Sum_probs=46.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      -|.+++++..||++.    .|++-++++..|..+||+|+||+|||||||+|+.
T Consensus        80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            478889999999876    8999999999999999999999999999999987

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.28  E-value=1.5e-11  Score=104.18  Aligned_cols=121  Identities=40%  Similarity=0.635  Sum_probs=80.7

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee----cCCCH-HHHHhhcC------CCcccCcchhhhHHHHH
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF----DSQDP-KEAHARRG------APWTFNPLLLLNCLKNL  172 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~----~g~~~-~~~~~~~~------~~~~~~~~~~~tv~e~l  172 (229)
                      .+..++||+|+||||||||++.|+++++   +.+|. .+    ++... .......+      .+..++...+..++..+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l  107 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRL  107 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999   88884 22    22211 11111222      22222323334555555


Q ss_pred             Hccc-cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          173 RNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       173 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      ..+. ....+.|+....+............++++.|+.+++++++.|..+.+.+|.+
T Consensus       108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~v  164 (229)
T PRK09270        108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFT  164 (229)
T ss_pred             HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEE
Confidence            5554 5566778777666555444444467899999999999998888888877654

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=5.6e-12  Score=114.44  Aligned_cols=61  Identities=21%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ..|++-+.+|++.|.+.. +  .+.+++|-|.--..|+||||||.||||||++|.|.+.   |..|+
T Consensus       583 ~PPvLGlH~VtFgy~gqk-p--LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE  643 (807)
T KOG0066|consen  583 NPPVLGLHDVTFGYPGQK-P--LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGE  643 (807)
T ss_pred             CCCeeecccccccCCCCC-c--hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcch
Confidence            456899999999997653 2  6779999999999999999999999999999999999   99986

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.25  E-value=2.5e-12  Score=107.34  Aligned_cols=123  Identities=15%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHH----HHhcccCCCCceEecCCCH-HHHHhhcCCCcccCcc--------hhhh
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASSFDSQDP-KEAHARRGAPWTFNPL--------LLLN  167 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~----gll~~~~p~~G~~~~g~~~-~~~~~~~~~~~~~~~~--------~~~t  167 (229)
                      ++++.+| +++|+||||||||||+++|.    |...   +..|......+. ........+...|+..        ..++
T Consensus        17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~   92 (204)
T cd03240          17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA   92 (204)
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence            3455566 99999999999999999996    5555   655532111111 0001111122222222        1258


Q ss_pred             HHHHHHccccc--------cCCCCCCCCCCch------hhhhhccCCccEEEecCCeeeecccCHH-HHHHHHhh
Q 027060          168 CLKNLRNQGSV--------YAPSFDHGVGDPV------EDDILVGLQHKVVIVDGNYLFLDGGVWK-DVSSMFDE  227 (229)
Q Consensus       168 v~e~l~~~~~~--------~~~~~~~~~~~~~------~~~l~~~~~~rvLi~d~~~LlLDEP~~~-~l~~~l~~  227 (229)
                      +++|+.+...-        ....++.++.+++      ....++...++++++|+++..||...+. .+.+++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~  167 (204)
T cd03240          93 ILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEE  167 (204)
T ss_pred             HhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence            88888654211        1123344444432      2333445667777777777777776777 78777754

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.24  E-value=9.5e-12  Score=93.50  Aligned_cols=79  Identities=19%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh---cCCCcccCcchhhhHHH
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR---RGAPWTFNPLLLLNCLK  170 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~---~~~~~~~~~~~~~tv~e  170 (229)
                      .+|++++|++.+|++++|+||||||||||++++.         +|. .+.|.++......   .-..+.+|.....++++
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf~~ti~~   73 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPELGLEIRLRL   73 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechhcchhhHHh
Confidence            3799999999999999999999999999999975         344 7778775432221   11233444455589999


Q ss_pred             HHHccccccCCC
Q 027060          171 NLRNQGSVYAPS  182 (229)
Q Consensus       171 ~l~~~~~~~~~~  182 (229)
                      ||.+...++...
T Consensus        74 Ni~~~~~~~~~~   85 (107)
T cd00820          74 NIFLITKKTVNV   85 (107)
T ss_pred             hceeeeEEEEee
Confidence            999865554433

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.23  E-value=2.2e-12  Score=108.38  Aligned_cols=43  Identities=16%  Similarity=0.302  Sum_probs=36.6

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      |+++|.. .|++..    +++++++     +++||+||||||||||+++|.-.
T Consensus         6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~   48 (212)
T cd03274           6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV   48 (212)
T ss_pred             EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHH
Confidence            7788875 887765    7888887     89999999999999999999844

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.21  E-value=5.6e-12  Score=105.70  Aligned_cols=47  Identities=19%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeec-CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~-~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -|+++|+. .|.+..       +++|... +|++++|+|+||||||||+++|++.+
T Consensus         5 ~i~l~nf~-~y~~~~-------~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l   52 (213)
T cd03279           5 KLELKNFG-PFREEQ-------VIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL   52 (213)
T ss_pred             EEEEECCc-CcCCce-------EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence            48889988 665532       5667654 58999999999999999999999644

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=99.19  E-value=1.2e-11  Score=106.31  Aligned_cols=124  Identities=30%  Similarity=0.462  Sum_probs=100.5

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-c-e-EecCCC-------HHHHHhhcCCCcccCcchhhhHHHHHHc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-S-SFDSQD-------PKEAHARRGAPWTFNPLLLLNCLKNLRN  174 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G-~-~~~g~~-------~~~~~~~~~~~~~~~~~~~~tv~e~l~~  174 (229)
                      ...-+|||.|+-|+||||+.+.+.-++....... - . ..+|.-       ......++|.|..|+...++..+..+..
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~  159 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKA  159 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhc
Confidence            3456799999999999999999999986421111 1 1 344541       2234667899999999988888888886


Q ss_pred             ccc-ccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          175 QGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      +.. +..|.|++...+.++.+..+..+++|||+|++++++|+++|..+-+++|..
T Consensus       160 ~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfS  214 (283)
T COG1072         160 GKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFS  214 (283)
T ss_pred             CCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEE
Confidence            655 788999999999999999999999999999999999999998888888764

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.19  E-value=2.2e-11  Score=113.34  Aligned_cols=61  Identities=16%  Similarity=0.117  Sum_probs=53.0

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      .++|++++|+..-+.. .. .+++++||+|+.|+-+.|.||||||||+|+|+|.|+-+   ..+|.
T Consensus       431 Dn~i~~e~v~l~tPt~-g~-~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~  491 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTN-GD-LLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGK  491 (659)
T ss_pred             cceEEeeeeeecCCCC-Cc-eeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCe
Confidence            4689999999988763 22 36789999999999999999999999999999999987   67785

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.15  E-value=3.7e-11  Score=109.47  Aligned_cols=58  Identities=22%  Similarity=0.406  Sum_probs=47.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ..+++-.++.|.|++..     |+-=.=+|..||++|++||||-|||||.++|+|.++   |++|.
T Consensus       340 ~~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~  397 (591)
T COG1245         340 DTLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS  397 (591)
T ss_pred             ceeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC
Confidence            34677778888888753     333345677899999999999999999999999999   99985

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.14  E-value=5e-11  Score=99.22  Aligned_cols=109  Identities=10%  Similarity=0.064  Sum_probs=65.8

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCCCcccCcchhhhHHHHHHcc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~  175 (229)
                      +++|++++.  |++++|+||||||||||+|+|+|...  ....|..+....       . ..+....+..+++.||+.++
T Consensus        16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--l~~~G~~v~a~~-------~-~~q~~~l~~~~~~~d~l~~~   83 (199)
T cd03283          16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--LAQAGAPVCASS-------F-ELPPVKIFTSIRVSDDLRDG   83 (199)
T ss_pred             ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--HHHcCCEEecCc-------c-CcccceEEEeccchhccccc
Confidence            666776665  69999999999999999999999763  012343332211       1 11122223347888888775


Q ss_pred             ccccCCCCCCCCCCchhhhhhccC--CccEEEecCCeeeecccCHHHH
Q 027060          176 GSVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDV  221 (229)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~--~~rvLi~d~~~LlLDEP~~~~l  221 (229)
                      ...+    .... .+....+....  .++++++||++-.+|......+
T Consensus        84 ~s~~----~~e~-~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l  126 (199)
T cd03283          84 ISYF----YAEL-RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAA  126 (199)
T ss_pred             cChH----HHHH-HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHH
Confidence            4321    1111 23333333333  6777888888888887666544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PLN02796 D-glycerate 3-kinase

Probab=99.10  E-value=1.7e-10  Score=103.04  Aligned_cols=118  Identities=25%  Similarity=0.295  Sum_probs=81.8

Q ss_pred             cccceeeee---cCCcE-----EEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHH--------------
Q 027060           96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKE--------------  149 (229)
Q Consensus        96 ~l~~isl~i---~~Ge~-----v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~--------------  149 (229)
                      +++++++.+   ++|+.     +||+|++|||||||++.|.+++.   +.   .|. .++|.....              
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~  157 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---ATGRRAASLSIDDFYLTAADQAKLAEANPGNA  157 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---ccCCceeEEEECCcccchhhHHHHHhhCcchh
Confidence            677888887   56665     99999999999999999999998   54   344 677653211              


Q ss_pred             HHhhcCCCcccCcchhhhHHHHHH----ccccccCCCCCCCC----CCchhhhh--hccCCccEEEecCCeeeeccc
Q 027060          150 AHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDHGV----GDPVEDDI--LVGLQHKVVIVDGNYLFLDGG  216 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~~~tv~e~l~----~~~~~~~~~~~~~~----~~~~~~~l--~~~~~~rvLi~d~~~LlLDEP  216 (229)
                      ....+|.+..++...+...++.|.    .+..+..|.||+..    ++|....-  .+....+|+|+|+++++.-..
T Consensus       158 Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~  234 (347)
T PLN02796        158 LLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPL  234 (347)
T ss_pred             hhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCC
Confidence            112234555666655566666666    45567788998766    44544322  233578999999999998553

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.09  E-value=3.7e-10  Score=104.90  Aligned_cols=91  Identities=19%  Similarity=0.254  Sum_probs=70.9

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----  148 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----  148 (229)
                      +.+++++++++..-        .++|+||++.+||++||.|-=|||+|-|+++|.|..+   +.+|+ .++|+.+.    
T Consensus       260 ~~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp  328 (500)
T COG1129         260 GEPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSP  328 (500)
T ss_pred             CCcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCH
Confidence            45678898887432        3679999999999999999999999999999999888   88997 99998532    


Q ss_pred             HHHhhcCCCcccCcch------hhhHHHHHHcc
Q 027060          149 EAHARRGAPWTFNPLL------LLNCLKNLRNQ  175 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~~------~~tv~e~l~~~  175 (229)
                      ....+.|+.+.+.+..      .+++.+|+.+.
T Consensus       329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~  361 (500)
T COG1129         329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLA  361 (500)
T ss_pred             HHHHHcCCEeCCcccccCcCcCCCcHHHheehH
Confidence            2234457766665442      27888888765

>PRK05439 pantothenate kinase; Provisional

Probab=99.04  E-value=2.7e-10  Score=100.70  Aligned_cols=124  Identities=26%  Similarity=0.302  Sum_probs=89.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCC--HHH-----HHhhcCCCcccCcchhhhHHHHHHcc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQD--PKE-----AHARRGAPWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~--~~~-----~~~~~~~~~~~~~~~~~tv~e~l~~~  175 (229)
                      ..-+|||.|++|||||||.+.|..++...  .+..+. ..+|.-  ...     ...+.|.+..++...+...+..+..+
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G  164 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSG  164 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcC
Confidence            34589999999999999999999987511  011122 445431  111     12245677777777778889999888


Q ss_pred             cc-ccCCCCCCCCCCchhhhhhccCCccEEEecCCeee-eccc-CHHHHHHHHhhhC
Q 027060          176 GS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF-LDGG-VWKDVSSMFDEKW  229 (229)
Q Consensus       176 ~~-~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~Ll-LDEP-~~~~l~~~l~~~~  229 (229)
                      .. +..|.|++...+...........++|+|+|+.+++ .+++ .|..+++++|.+|
T Consensus       165 ~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~I  221 (311)
T PRK05439        165 KPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSI  221 (311)
T ss_pred             CCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEE
Confidence            76 88899998888876555555568899999998877 5555 7889999988764

>TIGR00235 udk uridine kinase

Probab=99.03  E-value=4e-10  Score=93.96  Aligned_cols=107  Identities=26%  Similarity=0.403  Sum_probs=62.8

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCC--CHH--HHHhhcCCCc----ccCcchhhhHHHHHHc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQ--DPK--EAHARRGAPW----TFNPLLLLNCLKNLRN  174 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~--~~~--~~~~~~~~~~----~~~~~~~~tv~e~l~~  174 (229)
                      ++|++++|+|+||||||||++.|+++++   +.. +. ..++.  ...  ....+.++.+    .++...+...++.+..
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~   80 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---KLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKN   80 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc---ccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence            5899999999999999999999999987   522 22 22221  001  1112222221    1122222444555555


Q ss_pred             cccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecc
Q 027060          175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  215 (229)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE  215 (229)
                      +.....+.|+.....+...... .....++|+|+.++++++
T Consensus        81 g~~v~~p~yd~~~~~~~~~~~~-~~~~~~vIieG~~~~~~~  120 (207)
T TIGR00235        81 GSPIDVPVYDYVNHTRPKETVH-IEPKDVVILEGIMPLFDE  120 (207)
T ss_pred             CCCEecccceeecCCCCCceEE-eCCCCEEEEEehhhhchH
Confidence            6666777777655544332222 245678999988777654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.02  E-value=4.7e-10  Score=97.12  Aligned_cols=32  Identities=19%  Similarity=0.391  Sum_probs=30.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEV  127 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L  127 (229)
                      .|+|++++|+.|.+++|.|++|||||||++.+
T Consensus        10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271          10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             cCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence            58899999999999999999999999999866

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.01  E-value=3.3e-09  Score=97.47  Aligned_cols=98  Identities=19%  Similarity=0.201  Sum_probs=79.8

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-----  147 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-----  147 (229)
                      +.+++++++|+..-...   +..+++|||+|.+|||+||.|-.|-|-+.|+.+|+|+.+   +.+|. .++|+++     
T Consensus       254 g~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~  327 (501)
T COG3845         254 GEVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLS  327 (501)
T ss_pred             CCeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCC
Confidence            56799999999765432   337889999999999999999999999999999999998   88896 8999875     


Q ss_pred             HHHHhhcCCCcccCcch------hhhHHHHHHcccc
Q 027060          148 KEAHARRGAPWTFNPLL------LLNCLKNLRNQGS  177 (229)
Q Consensus       148 ~~~~~~~~~~~~~~~~~------~~tv~e~l~~~~~  177 (229)
                      ...+++.|+.+.+.+..      -+++.||+.+...
T Consensus       328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~  363 (501)
T COG3845         328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH  363 (501)
T ss_pred             HHHHHhcCCccCChhhccCccccCccHHHHhhhhhc
Confidence            23455678877776652      2899999987544

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.01  E-value=1e-09  Score=91.28  Aligned_cols=127  Identities=13%  Similarity=0.105  Sum_probs=68.9

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhh----cCCCcccCc------ch--
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR----RGAPWTFNP------LL--  164 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~----~~~~~~~~~------~~--  164 (229)
                      ++++++++.+| +.+|+||||||||||+..|...+.   ........|.........    ..+...|+.      ..  
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~   87 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV   87 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH
Confidence            44667777776 889999999999999999986554   322212223221111000    001111111      00  


Q ss_pred             h--hhHHHHHHcccccc--CCCCCCCCCCchhhhhhc----cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          165 L--LNCLKNLRNQGSVY--APSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       165 ~--~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~----~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .  ..+.+.+.......  ...++.++.+++....++    ...++++++|+++..||......+.+++..
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~  158 (198)
T cd03276          88 LSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVK  158 (198)
T ss_pred             HHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHH
Confidence            0  12223333311111  123445555555555544    467888888888888888777777776654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.98  E-value=2.3e-10  Score=95.13  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=29.1

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ..++++..|++++|+||||||||||+++|++..
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~   53 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV   53 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence            567777899999999999999999999999543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.98  E-value=2.9e-10  Score=105.18  Aligned_cols=57  Identities=16%  Similarity=0.101  Sum_probs=47.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      |.++|+-..-+...  + ++..++|.|++|--+.|+||||||||+|+|+|.|+-+   ...|.
T Consensus       482 I~lenIpvItP~~~--v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~  538 (728)
T KOG0064|consen  482 IILENIPVITPAGD--V-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGL  538 (728)
T ss_pred             eEEecCceeccCcc--e-eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCe
Confidence            77888876665432  2 6789999999999999999999999999999999876   55554

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.97  E-value=1.8e-09  Score=92.66  Aligned_cols=30  Identities=17%  Similarity=0.294  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      ..+++|+||||||||||+++|++++.   +..+
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~   54 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG---ITNL   54 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---cccc
Confidence            56999999999999999999999997   6543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.96  E-value=1.3e-09  Score=102.98  Aligned_cols=110  Identities=24%  Similarity=0.355  Sum_probs=72.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcc---hhhhH---HHHHHcccccc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPL---LLLNC---LKNLRNQGSVY  179 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~---~~~tv---~e~l~~~~~~~  179 (229)
                      --+|||.||||||||||++.|.++++    ..|. .++|......  ..+  ..++.+   .+..+   ++.|..+..+.
T Consensus        65 riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~~~~~--~i~--~nfD~P~a~D~d~L~enL~~Lr~GksV~  136 (656)
T PLN02318         65 IILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYNDSSR--IID--GNFDDPRLTDYDTLLDNIHDLKAGKSVQ  136 (656)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEcceecchh--hhC--ccCCChhhcchhHHHHHHHHHhCCCcee
Confidence            35899999999999999999999864    5675 7777642111  111  222222   22334   44455566677


Q ss_pred             CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060          180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  229 (229)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~  229 (229)
                      .|.||+..+.+...........+|+|+|+.+++.+     ++++++|.+|
T Consensus       137 iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkI  181 (656)
T PLN02318        137 VPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRV  181 (656)
T ss_pred             cCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEE
Confidence            88888877665433233345788999999999853     5777777653

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.96  E-value=4.6e-10  Score=93.19  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=29.4

Q ss_pred             ccceeeeecCCc-EEEEEcCCCCcHHHHHHHHH
Q 027060           97 TSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus        97 l~~isl~i~~Ge-~v~IiGpNGsGKSTLlk~L~  128 (229)
                      +-++||++.+|+ +++|.||||||||||+|+|.
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            348999999996 79999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.93  E-value=5.1e-10  Score=103.36  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=41.1

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e-EecCCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQD  146 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~g~~  146 (229)
                      +|++||++|.+||+++|+|||||||||||+  .|+..   |++| . .++|.+
T Consensus        21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~   68 (504)
T TIGR03238        21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATH   68 (504)
T ss_pred             HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEE
Confidence            789999999999999999999999999999  67777   7777 4 788864

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.92  E-value=2.4e-09  Score=96.95  Aligned_cols=128  Identities=18%  Similarity=0.206  Sum_probs=78.2

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc-----CCCCce-EecCCCHHHHHhhcCCCcccCcchhhhH
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-----WPQKAS-SFDSQDPKEAHARRGAPWTFNPLLLLNC  168 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~-----~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~~tv  168 (229)
                      .+++|+||+|++|++++|+|++|+||||||++|+|.....     -|++|. .+--..+ .......+-..|.   -.++
T Consensus       397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-~a~iPge~Ep~f~---~~ti  472 (593)
T COG2401         397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-SALIPGEYEPEFG---EVTI  472 (593)
T ss_pred             eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-hhccCcccccccC---chhH
Confidence            3789999999999999999999999999999999986421     166664 2211111 0000000111111   1122


Q ss_pred             HHHHH-----------------ccc-cccC---CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          169 LKNLR-----------------NQG-SVYA---PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       169 ~e~l~-----------------~~~-~~~~---~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      ++.+.                 ... .++.   ...+.+++.+...+..+...+.+++.|+=...|||-+..++..-+.
T Consensus       473 lehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkis  551 (593)
T COG2401         473 LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKIS  551 (593)
T ss_pred             HHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHH
Confidence            22222                 111 1111   1234566777777777778889999999999999987666544433

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=1.3e-09  Score=100.51  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=55.1

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ..|++++.+|++.|+...-  ..+.++++++..-..++++|+||+||||++|++.+.+.   |..|.
T Consensus       359 ~~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi  420 (582)
T KOG0062|consen  359 SPPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGI  420 (582)
T ss_pred             CCCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccce
Confidence            3468999999999987532  46789999999999999999999999999999999998   99996

>PTZ00301 uridine kinase; Provisional

Probab=98.90  E-value=2.6e-09  Score=89.65  Aligned_cols=117  Identities=22%  Similarity=0.357  Sum_probs=76.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcc-cCCCCc-e-EecCC-----CHHHH---HhhcCCCcccCcchhhhHHHHHHccc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKA-S-SFDSQ-----DPKEA---HARRGAPWTFNPLLLLNCLKNLRNQG  176 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~-~~p~~G-~-~~~g~-----~~~~~---~~~~~~~~~~~~~~~~tv~e~l~~~~  176 (229)
                      -+|||.|++|||||||.+.|...+.. ..+... . ..++.     .....   ..+.+.+..++...+...+..|.-+.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g~   83 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSGK   83 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcCC
Confidence            57999999999999999988765420 002211 1 11222     11111   12334466666666677778888887


Q ss_pred             cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060          177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  229 (229)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~  229 (229)
                      .+..|.|++..+.+......+ ...+|+|+|+.+++.++    ++++++|.+|
T Consensus        84 ~i~~P~yd~~~~~~~~~~~~i-~p~~ViIvEGi~~l~~~----~l~~l~D~~i  131 (210)
T PTZ00301         84 TVQIPQYDYVHHTRSDTAVTM-TPKSVLIVEGILLFTNA----ELRNEMDCLI  131 (210)
T ss_pred             cccCCCcccccCCcCCceEEe-CCCcEEEEechhhhCCH----HHHHhCCEEE
Confidence            888899988777665443333 45699999999997775    6777777653

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.89  E-value=4.2e-09  Score=86.98  Aligned_cols=103  Identities=29%  Similarity=0.504  Sum_probs=60.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEe--cCC----CHHHHHhhcC----CCcccCcchhhhHHHHHHccccc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF--DSQ----DPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSV  178 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~--~g~----~~~~~~~~~~----~~~~~~~~~~~tv~e~l~~~~~~  178 (229)
                      ++||+|+||||||||+++|.+++.   ......+  ++.    ..........    .+..++...+...+..+..+...
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~---~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~   77 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG---NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSV   77 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCE
Confidence            589999999999999999999874   2111121  211    1111111111    22222333334566666666666


Q ss_pred             cCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecc
Q 027060          179 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  215 (229)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE  215 (229)
                      ..+.|+...+.+..... ....++++++|+++++.++
T Consensus        78 ~~p~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          78 EIPVYDFKTHSRLKETV-TVYPADVIILEGILALYDK  113 (198)
T ss_pred             eccccccccCcccCCce-ecCCCCEEEEechhhccch
Confidence            67777776665543333 2345778888888887764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.87  E-value=5.9e-09  Score=86.85  Aligned_cols=107  Identities=24%  Similarity=0.379  Sum_probs=64.2

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCH------HHHHhhc----CCCcccCcchhhhHHHHHHc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP------KEAHARR----GAPWTFNPLLLLNCLKNLRN  174 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~------~~~~~~~----~~~~~~~~~~~~tv~e~l~~  174 (229)
                      .++.+++|.|+||||||||.+.|.+.+.   ...-..+...+.      .....+.    +.+..++...+...++.+.-
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~   80 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG---DESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKA   80 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence            4688999999999999999999999884   222112211110      0011111    12233333344566666666


Q ss_pred             cccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecc
Q 027060          175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  215 (229)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE  215 (229)
                      +..+..+.|+...+.+....... ....++++|+.+++.++
T Consensus        81 ~~~v~~p~~d~~~~~~~~~~~~~-~~~~~vivEg~~l~~~~  120 (209)
T PRK05480         81 GKAIEIPVYDYTEHTRSKETIRV-EPKDVIILEGILLLEDE  120 (209)
T ss_pred             CCccccCcccccccccCCCeEEe-CCCCEEEEEeehhcCch
Confidence            66666777776665554333332 45678999998887653

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.87  E-value=6.2e-09  Score=90.73  Aligned_cols=111  Identities=22%  Similarity=0.286  Sum_probs=67.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCH----HHHHhhcCCCcc-cC---cchhhhHHHHHHccccccC
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP----KEAHARRGAPWT-FN---PLLLLNCLKNLRNQGSVYA  180 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~----~~~~~~~~~~~~-~~---~~~~~tv~e~l~~~~~~~~  180 (229)
                      ++||+|+||||||||++.|++++.   +..+..+...+.    ...+...++... +.   ...+...++.+..+..+..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~   77 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEK   77 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC---CCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCccc
Confidence            589999999999999999999998   777753333222    111223343211 11   1122455566666666667


Q ss_pred             CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       181 ~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      |.|++..+.....  ......+++|+|+.+++.++    .+++++|.+
T Consensus        78 P~y~~~~~~~~~~--~~i~~~~ivIvEG~~~l~~~----~l~~~~D~~  119 (273)
T cd02026          78 PIYNHVTGLIDPP--ELIKPTKIVVIEGLHPLYDE----RVRELLDFS  119 (273)
T ss_pred             ccccccCCCcCCc--EEcCCCCEEEEeeehhhCch----hhhhhccEE
Confidence            7777665542211  11234689999999987764    444454443

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.86  E-value=1.6e-09  Score=94.21  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      .-++|+||||||||||+++|+|++.   |.+|. .++|+++
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v  149 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKV  149 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEe
Confidence            5689999999999999999999999   99997 8888765

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.83  E-value=1e-08  Score=86.06  Aligned_cols=116  Identities=28%  Similarity=0.409  Sum_probs=83.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--E----ecCCCHHHH--Hhh--cCCCcccCcchhhhHHHHHHcc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--S----FDSQDPKEA--HAR--RGAPWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~----~~g~~~~~~--~~~--~~~~~~~~~~~~~tv~e~l~~~  175 (229)
                      +.-++||.|++||||||+.+.|.-.+.   ...-.  .    +.+......  +..  ...+..++...+...+.+|..+
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g   83 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLG---VEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG   83 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhC---cCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence            346899999999999999999999887   33211  1    222111111  111  1235566666678899999999


Q ss_pred             ccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060          176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  229 (229)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~  229 (229)
                      ..+..|.|+...+.+...... ....+|+|+|+-+++.||    ++++++|.++
T Consensus        84 ~~v~~P~yd~~~~~r~~~~i~-~~p~~VVIvEGi~~l~d~----~lr~~~d~kI  132 (218)
T COG0572          84 KPVDLPVYDYKTHTREPETIK-VEPNDVVIVEGILLLYDE----RLRDLMDLKI  132 (218)
T ss_pred             CcccccccchhcccccCCccc-cCCCcEEEEecccccccH----HHHhhcCEEE
Confidence            999999999888777653333 357899999999999997    8888887653

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.83  E-value=1.3e-08  Score=92.98  Aligned_cols=108  Identities=20%  Similarity=0.289  Sum_probs=71.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCH--HHH-H-----------hhcCCCcccCcchhhhH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDP--KEA-H-----------ARRGAPWTFNPLLLLNC  168 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~--~~~-~-----------~~~~~~~~~~~~~~~tv  168 (229)
                      --+|||+|++|||||||++.|.+++.   +.   .|. .++|...  .+. .           ..+|.+..++......+
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~~lL~---~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~  288 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALDYLFR---VTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVET  288 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc---ccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHH
Confidence            37899999999999999999999997   54   444 6777542  111 1           11233445555544555


Q ss_pred             HHHH----HccccccCCCCCCCC----CCchhhhhh--ccCCccEEEecCCeeeecccC
Q 027060          169 LKNL----RNQGSVYAPSFDHGV----GDPVEDDIL--VGLQHKVVIVDGNYLFLDGGV  217 (229)
Q Consensus       169 ~e~l----~~~~~~~~~~~~~~~----~~~~~~~l~--~~~~~rvLi~d~~~LlLDEP~  217 (229)
                      ++.+    ..+..+..|.||+..    +++.....+  +....+|+|+|++++++....
T Consensus       289 L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~  347 (460)
T PLN03046        289 LEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLP  347 (460)
T ss_pred             HHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCC
Confidence            5555    346677788898765    446544322  345789999999999986533

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.81  E-value=5.9e-09  Score=87.13  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=34.6

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.+|++|++..|++++|+||||+|||||+++|+++.-
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~   54 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI   54 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999998753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.81  E-value=1e-09  Score=90.69  Aligned_cols=116  Identities=35%  Similarity=0.535  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhccc-CC-C--Cce-EecCCCH----HHHHhhc------CCCcccCcchhhhHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKI-WP-Q--KAS-SFDSQDP----KEAHARR------GAPWTFNPLLLLNCLKNLR  173 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~-~p-~--~G~-~~~g~~~----~~~~~~~------~~~~~~~~~~~~tv~e~l~  173 (229)
                      +|||.|++|||||||.+.|...+... .+ .  .+. .+++...    .......      ..+..++...+...+..|.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~   80 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK   80 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence            68999999999999999999999721 01 0  112 2333211    1111111      1233344444566777787


Q ss_pred             ccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060          174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  229 (229)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~  229 (229)
                      .+..+..|.|++..+..... .......+|+|+|+.++++|+.    +++++|.+|
T Consensus        81 ~g~~i~~p~yd~~~~~~~~~-~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~i  131 (194)
T PF00485_consen   81 NGGSIEIPIYDFSTGDRDPW-IIIISPSDIVIVEGIYALYDEE----LRDLFDLKI  131 (194)
T ss_dssp             TTSCEEEEEEETTTTEEEEE-EEEEES-SEEEEEETTTTSSHC----HGGG-SEEE
T ss_pred             CCCcccccccccccccceee-eeecCCCCEEEEcccceeeeee----ecccceeEE
Confidence            78888888888877666542 2234578999999999999985    666666543

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.80  E-value=1.2e-08  Score=101.80  Aligned_cols=44  Identities=20%  Similarity=0.334  Sum_probs=38.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      +.|++++++.     .    .|++++++|++|+++||+|+||||||||++.+.
T Consensus       613 ~~L~v~~l~~-----~----~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        613 KFLKLKGARE-----N----NLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             ceEEecCCcc-----C----CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence            4688888861     1    578999999999999999999999999998764

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=7.2e-09  Score=94.50  Aligned_cols=50  Identities=22%  Similarity=0.267  Sum_probs=44.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -|.++|.+.+-.+..    .+.+.|+.|-.|..+|||||||-||||||+.|+.-
T Consensus       264 DIKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~R  313 (807)
T KOG0066|consen  264 DIKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAAR  313 (807)
T ss_pred             cceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhh
Confidence            388899888876654    67799999999999999999999999999999874

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.80  E-value=1.1e-08  Score=87.67  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=33.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |+++|. +.|.+..         ++...++ +++|+||||||||||+.+|.+++.
T Consensus         4 i~l~nf-~~~~~~~---------~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~   47 (247)
T cd03275           4 LELENF-KSYKGRH---------VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG   47 (247)
T ss_pred             EEEECc-cccCCCe---------eecCCCC-eEEEECCCCCCHHHHHHHHHHHhC
Confidence            677776 5675421         1222344 999999999999999999999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.65  E-value=3.3e-08  Score=98.61  Aligned_cols=40  Identities=20%  Similarity=0.320  Sum_probs=36.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA  125 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk  125 (229)
                      .|+++|++.     .    .|++++|+|++|++++|+|+||||||||++
T Consensus       612 ~l~l~~~~~-----~----~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       612 FLTLKGARE-----N----NLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             eEEEEeCcc-----C----CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            689999862     1    588999999999999999999999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.65  E-value=1.6e-08  Score=85.23  Aligned_cols=70  Identities=17%  Similarity=0.090  Sum_probs=46.1

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCCCcccCcchhhhHHHHHHcc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~  175 (229)
                      +.+++++++.+ ++++|+||||+|||||+|+|++..-  ....|..+...       ...+++..+.+..+++.+++..+
T Consensus        20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~--l~~~g~~vp~~-------~~~i~~~~~i~~~~~~~~~ls~g   89 (216)
T cd03284          20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL--LAQIGSFVPAS-------KAEIGVVDRIFTRIGASDDLAGG   89 (216)
T ss_pred             EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH--HhccCCeeccc-------cceecceeeEeccCCchhhhccC
Confidence            67899999887 9999999999999999999987653  02334322211       11223333334446777777655

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.64  E-value=1.9e-08  Score=101.49  Aligned_cols=124  Identities=18%  Similarity=0.286  Sum_probs=86.5

Q ss_pred             cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-eEecCCCHHHHHhhcCC---CcccCcchhhhHH
Q 027060           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA---PWTFNPLLLLNCL  169 (229)
Q Consensus        94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~~~~g~~~~~~~~~~~~---~~~~~~~~~~tv~  169 (229)
                      +.+++|++.-+++|+.+.++||.|||||||++.|+|.+.......| ..++|.+..+...+..+   ++..-..+.+||+
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            4589999999999999999999999999999999998764323345 48999876554332222   3444444558898


Q ss_pred             HHHHccccccCCC--CC--------------------------CCCCCchhhhhhccCCccE-----EEecCCeeeeccc
Q 027060          170 KNLRNQGSVYAPS--FD--------------------------HGVGDPVEDDILVGLQHKV-----VIVDGNYLFLDGG  216 (229)
Q Consensus       170 e~l~~~~~~~~~~--~~--------------------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP  216 (229)
                      |-+.+..+...+.  ++                          .-.++.....++.|++.||     ++..+.++.+||+
T Consensus       208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~  287 (1391)
T KOG0065|consen  208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI  287 (1391)
T ss_pred             ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence            8888876554431  11                          1123333344666777777     7777888888887


Q ss_pred             C
Q 027060          217 V  217 (229)
Q Consensus       217 ~  217 (229)
                      +
T Consensus       288 t  288 (1391)
T KOG0065|consen  288 T  288 (1391)
T ss_pred             c
Confidence            4

>PRK07429 phosphoribulokinase; Provisional

Probab=98.64  E-value=6.9e-08  Score=86.20  Aligned_cols=112  Identities=21%  Similarity=0.317  Sum_probs=67.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--EecCCC-H-HHHHhhcCC-CcccC---cchhhhHHHHHHcccccc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQD-P-KEAHARRGA-PWTFN---PLLLLNCLKNLRNQGSVY  179 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~g~~-~-~~~~~~~~~-~~~~~---~~~~~tv~e~l~~~~~~~  179 (229)
                      -++||.|+||||||||++.|.+++.   +..+.  ..++.- . ...+...+. +..+.   ...+...++.+..+..+.
T Consensus         9 ~IIgI~G~SGSGKSTla~~L~~ll~---~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I~   85 (327)
T PRK07429          9 VLLGVAGDSGCGKTTFLRGLADLLG---EELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPIL   85 (327)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhHhc---cCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCcee
Confidence            4899999999999999999999998   77653  333321 1 111222332 11111   112244555666666666


Q ss_pred             CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      .|.|++..+..... . .....+++|+|+.+.++++    .+++++|.+
T Consensus        86 ~P~yd~~~g~~~~~-~-~i~p~~iVIvEG~~~l~~~----~lr~~~D~~  128 (327)
T PRK07429         86 KPIYNHETGTFDPP-E-YIEPNKIVVVEGLHPLYDE----RVRELYDFK  128 (327)
T ss_pred             cceeecCCCCcCCc-E-ecCCCcEEEEechhhcCcH----hHHhhCCEE
Confidence            67777665543221 1 1234689999999877776    455555554

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.64  E-value=2e-08  Score=82.48  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=38.9

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      .+-+.+.+.+|+.++|+||||||||||+++|+++++   ++.|. .+.+
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied   60 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIED   60 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECC
Confidence            334567889999999999999999999999999998   88886 6644

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.62  E-value=2.2e-08  Score=84.82  Aligned_cols=48  Identities=19%  Similarity=0.137  Sum_probs=42.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH-HhcccCCCCceEecCCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQD  146 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g-ll~~~~p~~G~~~~g~~  146 (229)
                      +.+|+++.+.+|++++|.||||+|||||+++|++ .+.   +..|..+.+..
T Consensus        20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a~~   68 (222)
T cd03287          20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPASS   68 (222)
T ss_pred             EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEcCc
Confidence            6789999999999999999999999999999999 566   78887665543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.62  E-value=8.7e-08  Score=100.39  Aligned_cols=41  Identities=17%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA  125 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk  125 (229)
                      ..|++++++.     .    .|+++||+|++||+++|.|+||||||||++
T Consensus       599 ~~L~l~~~~~-----~----~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        599 GTLTLSKATK-----H----NLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             CeEEEecccc-----C----CccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            3688888862     1    588999999999999999999999999999

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.58  E-value=2.4e-08  Score=84.44  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +.+|+++++.++++++|.||||+|||||+++|+-
T Consensus        19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~   52 (222)
T cd03285          19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV   52 (222)
T ss_pred             EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence            6789999999999999999999999999999874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.58  E-value=7.6e-08  Score=88.88  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=52.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD  143 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~  143 (229)
                      .+.++.+++++.|...   +.+++.++ .|.+|++++|+|+||||||||+++|+++..   |+.|. .+.
T Consensus       137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~li  199 (450)
T PRK06002        137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALV  199 (450)
T ss_pred             CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeec
Confidence            3468999999999653   23677775 899999999999999999999999999998   99886 443

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.56  E-value=1e-07  Score=89.57  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=53.0

Q ss_pred             EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      +.|+++.|+...    +++++++.+..|+.++|+|+||+|||||++.|.|+++   |.+|. .+....+
T Consensus       187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~i  248 (506)
T PRK09862        187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAAI  248 (506)
T ss_pred             ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecchh
Confidence            358888898765    7889999999999999999999999999999999999   99996 6655443

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.54  E-value=2.9e-07  Score=75.14  Aligned_cols=64  Identities=22%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHH----HHhhcCCCcccC-cchhhhHHHHHHcc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKE----AHARRGAPWTFN-PLLLLNCLKNLRNQ  175 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~----~~~~~~~~~~~~-~~~~~tv~e~l~~~  175 (229)
                      +|++++|+|+||||||||+++|++++.   +   ..++|.++..    .....++++..+ ...+.++..++.+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~---~---~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~   70 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS---A---KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS   70 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC---C---EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence            699999999999999999999999987   5   3566654321    122356655443 23456666666543

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.53  E-value=1.8e-07  Score=63.43  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             ccceeeeecC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        97 l~~isl~i~~-Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++..+++.+ |+++.|.|+||||||||+.+|.-++-
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            3455677765 57999999999999999999988776

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.53  E-value=7.4e-08  Score=77.37  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      ..++.+..+.++.|+|||||||||+++.+...+-   ...+
T Consensus        13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~   50 (162)
T cd03227          13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQS   50 (162)
T ss_pred             ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcch
Confidence            3455555667999999999999999999887765   5544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PLN02348 phosphoribulokinase

Probab=98.52  E-value=1.5e-07  Score=85.45  Aligned_cols=115  Identities=22%  Similarity=0.352  Sum_probs=70.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcccC--C------------CCce--EecCCCH--HHHHhhcCC----CcccCcch
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW--P------------QKAS--SFDSQDP--KEAHARRGA----PWTFNPLL  164 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~--p------------~~G~--~~~g~~~--~~~~~~~~~----~~~~~~~~  164 (229)
                      --+|||.|++|||||||.+.|...+....  +            +...  ..++.-.  ...+...++    +..++...
T Consensus        49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~dfDl  128 (395)
T PLN02348         49 TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDL  128 (395)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccHHH
Confidence            45899999999999999999999885110  0            1111  2333311  111122232    11222223


Q ss_pred             hhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          165 LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       165 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +...++.|..+..+..|.|++..+......  .....+++|+|+.++++|+    .+++++|.
T Consensus       129 l~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e----~lr~l~D~  185 (395)
T PLN02348        129 MYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDE----RVRDLLDF  185 (395)
T ss_pred             HHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCc----cccccCcE
Confidence            466777777777888889988776543322  2346899999999999987    44444444

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.50  E-value=2.7e-07  Score=76.12  Aligned_cols=114  Identities=23%  Similarity=0.283  Sum_probs=64.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCC----C-HHHH---HhhcCCCcccCcchhhhHHHHHHccccccC
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ----D-PKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYA  180 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~----~-~~~~---~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~  180 (229)
                      +++|.|++|||||||.+.|...+.   ...-...++.    + ....   ..+.+.+..++...+...+..+..+.....
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~---~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~   77 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPK   77 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC---CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccC
Confidence            589999999999999999999764   1110112221    1 1111   112233555555555667777776554332


Q ss_pred             CCCCCCCCCc-------------hhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060          181 PSFDHGVGDP-------------VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  229 (229)
Q Consensus       181 ~~~~~~~~~~-------------~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~  229 (229)
                      +.++......             ...........+++|+|+.+++.|+    .+++++|.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I  135 (187)
T cd02024          78 FLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY  135 (187)
T ss_pred             cccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence            3222221111             1112234456789999999988876    5667777654

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR00767 rho transcription termination factor Rho

Probab=98.49  E-value=5.3e-07  Score=82.17  Aligned_cols=53  Identities=21%  Similarity=0.262  Sum_probs=47.5

Q ss_pred             eEEEeeeeEEcCcccccccccc-----------ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~-----------~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -++++||++.|++..   .+|+           |+.+.|.+|++++|+||.|+|||||++.|...+.
T Consensus       130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            599999999998642   3675           9999999999999999999999999999999875

Members of this family differ in the specificity of RNA binding.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.48  E-value=2.3e-07  Score=78.03  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=26.9

Q ss_pred             cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++.+++.+| +.+|+|+||+||||||..|.-.+.
T Consensus        15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~   48 (213)
T cd03277          15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLG   48 (213)
T ss_pred             ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            3455565554 778999999999999999987764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.48  E-value=9.1e-08  Score=78.27  Aligned_cols=26  Identities=23%  Similarity=0.514  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.+.+|+||||||||+++..|.-.+.
T Consensus        22 ~~~~~i~G~NGsGKSnil~Ai~~~~~   47 (178)
T cd03239          22 NSFNAIVGPNGSGKSNIVDAICFVLG   47 (178)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC
Confidence            33999999999999999999977553

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.40  E-value=3.8e-07  Score=74.63  Aligned_cols=103  Identities=26%  Similarity=0.360  Sum_probs=61.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-Ee--cCCCHH--HHHhhcCC---CcccCcchhhhHHHHHHcccccc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SF--DSQDPK--EAHARRGA---PWTFNPLLLLNCLKNLRNQGSVY  179 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~--~g~~~~--~~~~~~~~---~~~~~~~~~~tv~e~l~~~~~~~  179 (229)
                      +++|.|++|||||||.+.|...+.   ... .. .+  ++.-..  ......+.   +..++...+...+..+..+....
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~---~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~   77 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR---VNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVE   77 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeee
Confidence            589999999999999999999875   221 11 22  221110  01111121   11122233455566666677777


Q ss_pred             CCCCCCCCCCchhhhhhccCCccEEEecCCeeeec
Q 027060          180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  214 (229)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLD  214 (229)
                      .|.|+...+.+............|+|+|+.+++.+
T Consensus        78 ~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~  112 (179)
T cd02028          78 LPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE  112 (179)
T ss_pred             cccceeECCccCCCceEEeCCCCEEEEecHHhcCH
Confidence            88888776665443223345678999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.40  E-value=2.4e-07  Score=77.83  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=24.5

Q ss_pred             eeeeecCC--cEEEEEcCCCCcHHHHHHHHHH
Q 027060          100 LASNVNVK--HIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       100 isl~i~~G--e~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++.+..+  .+++|.||||+|||||||.|..
T Consensus        20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence            34444444  7899999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.38  E-value=2.2e-07  Score=85.72  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +.+++++ |+|.+|++++|+|+||+|||||+++|+|+.+   ++.+
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~  184 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVV  184 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC---CCeE
Confidence            3489999 9999999999999999999999999999988   7754

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.38  E-value=2.4e-07  Score=85.36  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=52.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      +.++.+.++..|...   +.+++++ |.|.+|++++|+|+||+|||||+++|+++..   ++.|. .+.|+.
T Consensus       128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGeR  192 (433)
T PRK07594        128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGER  192 (433)
T ss_pred             CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECCC
Confidence            357778888777432   2388899 9999999999999999999999999999998   88886 555653

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.38  E-value=3.4e-07  Score=81.65  Aligned_cols=46  Identities=22%  Similarity=0.263  Sum_probs=40.9

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      .+++++ +.+.+|++++|+|+||+|||||+++|++...   ++.|. ...|
T Consensus        58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iG  104 (326)
T cd01136          58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIG  104 (326)
T ss_pred             EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEe
Confidence            378888 9999999999999999999999999999998   88875 4444

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.34  E-value=4.4e-07  Score=84.00  Aligned_cols=47  Identities=23%  Similarity=0.298  Sum_probs=42.3

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      .+++++ |.+.+|++++|+|+||+|||||+++|+++..   ++.|. .+.|+
T Consensus       147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Ge  194 (438)
T PRK07721        147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGE  194 (438)
T ss_pred             hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEec
Confidence            378899 9999999999999999999999999999999   99886 55444

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.34  E-value=2.7e-07  Score=78.50  Aligned_cols=39  Identities=15%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             ecCCcEEEEEcCCCCcHHHH-HHHHHHHhcccCCCCce-EecCC
Q 027060          104 VNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTL-lk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      +++|++++|+|+|||||||| ++++.++++   +.... ++..+
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e   61 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQ   61 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCC
Confidence            67899999999999999999 699999877   54443 55443

>COG4240 Predicted kinase [General function prediction only]

Probab=98.31  E-value=1.9e-06  Score=72.81  Aligned_cols=110  Identities=32%  Similarity=0.510  Sum_probs=78.7

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-----EecCC------------CHHHHHhhcCCCcccCcchh
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-----SFDSQ------------DPKEAHARRGAPWTFNPLLL  165 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-----~~~g~------------~~~~~~~~~~~~~~~~~~~~  165 (229)
                      +-.+.-++||.||-|||||||.-.|..++.   ...|+     .+++.            +.......+|.+-+++....
T Consensus        46 e~grPli~gisGpQGSGKStls~~i~~~L~---~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlg  122 (300)
T COG4240          46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA---AKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLG  122 (300)
T ss_pred             hcCCceEEEeecCCCCchhhHHHHHHHHHH---HhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHH
Confidence            344567899999999999999999999887   44332     33332            01112344678888888878


Q ss_pred             hhHHHHHHccccc-cCCCCCC----CCCCchhhhhhccCCccEEEecCCeeeecc
Q 027060          166 LNCLKNLRNQGSV-YAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG  215 (229)
Q Consensus       166 ~tv~e~l~~~~~~-~~~~~~~----~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE  215 (229)
                      +.|++.+.-+..- -.|.||+    +.++|....-+.-....++|+|+++++...
T Consensus       123 lnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP  177 (300)
T COG4240         123 LNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP  177 (300)
T ss_pred             HHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence            8999999877643 4567776    667776655555556889999999998765

>PRK08149 ATP synthase SpaL; Validated

Probab=98.29  E-value=9.1e-07  Score=81.48  Aligned_cols=50  Identities=14%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC---ce-EecCCCHH
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQDPK  148 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~---G~-~~~g~~~~  148 (229)
                      .+++++ +.+.+|++++|+|+||+|||||+++|++...   ++.   |. ..+|+++.
T Consensus       140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~  193 (428)
T PRK08149        140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVT  193 (428)
T ss_pred             EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHH
Confidence            388999 9999999999999999999999999999887   765   53 66677653

>TIGR01069 mutS2 MutS2 family protein

Probab=98.27  E-value=8.1e-07  Score=87.53  Aligned_cols=39  Identities=15%  Similarity=0.269  Sum_probs=33.6

Q ss_pred             ceeeeecCC-cEEEEEcCCCCcHHHHHHHHHHH-hcccCCCCce
Q 027060           99 ALASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKAS  140 (229)
Q Consensus        99 ~isl~i~~G-e~v~IiGpNGsGKSTLlk~L~gl-l~~~~p~~G~  140 (229)
                      .+++.+..+ ++++|.||||+|||||||+|+|. +.   +..|.
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~  353 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGI  353 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhCC
Confidence            478888877 89999999999999999999998 45   56663

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.26  E-value=1.2e-06  Score=81.03  Aligned_cols=49  Identities=20%  Similarity=0.268  Sum_probs=43.4

Q ss_pred             cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|++...   ++.|. .+.|+.
T Consensus       151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGer  200 (441)
T PRK09099        151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGER  200 (441)
T ss_pred             ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccC
Confidence            3488999 9999999999999999999999999999998   88886 556653

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.26  E-value=6.5e-07  Score=73.37  Aligned_cols=26  Identities=35%  Similarity=0.616  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |++++|+||||||||||+++|++...
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            78999999999999999999999876

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.24  E-value=1.3e-06  Score=80.20  Aligned_cols=52  Identities=23%  Similarity=0.309  Sum_probs=38.7

Q ss_pred             eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ++..+|+....   .|..+ =...+|.++||+|+||-||||-+|+|+|.+.   |.=|.
T Consensus        79 e~vHRYg~NgF---kL~~L-P~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~  130 (591)
T COG1245          79 EVVHRYGVNGF---KLYRL-PTPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGR  130 (591)
T ss_pred             cceeeccCCce---EEecC-CCCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCC
Confidence            35678876431   12111 1246899999999999999999999999998   87664

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.23  E-value=9.3e-07  Score=81.54  Aligned_cols=47  Identities=19%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      .+++++ |.+.+|++++|+|+||+|||||+++|++...   ++.|. ...|+
T Consensus       134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~  181 (422)
T TIGR02546       134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVIALIGE  181 (422)
T ss_pred             eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEcc
Confidence            378999 9999999999999999999999999999998   88886 44333

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.22  E-value=2.6e-06  Score=77.77  Aligned_cols=122  Identities=16%  Similarity=0.219  Sum_probs=74.3

Q ss_pred             cccceeeeecCCc-----EEEEEcCCCCcHHHHHHHHHHHhcccCCCCceE-------ecCCC--------HHHHHhhcC
Q 027060           96 PTSALASNVNVKH-----IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-------FDSQD--------PKEAHARRG  155 (229)
Q Consensus        96 ~l~~isl~i~~Ge-----~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~-------~~g~~--------~~~~~~~~~  155 (229)
                      .+.+..+.|..|+     ++..+|.||.|||||+++++|.++   |+.|..       +.-+.        +...... .
T Consensus       351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~-k  426 (592)
T KOG0063|consen  351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEIPVLNVSYKPQKISPKREGTVRQLLHT-K  426 (592)
T ss_pred             eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcccccceeccccccCccccchHHHHHHH-H
Confidence            4557778888775     589999999999999999999999   988731       11111        1111110 0


Q ss_pred             CCcccCcchh-hhHHHHHHcccc--ccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHH
Q 027060          156 APWTFNPLLL-LNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  221 (229)
Q Consensus       156 ~~~~~~~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l  221 (229)
                      +-..+..+.+ -.|.+-|..-..  ......+.+..++++..+.+|..+.+.+.|++...||-..+...
T Consensus       427 Ir~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A  495 (592)
T KOG0063|consen  427 IRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA  495 (592)
T ss_pred             hHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH
Confidence            1001111111 111111111000  01123456778899999999999999999999999998765433

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.20  E-value=1.4e-06  Score=80.77  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      .+++++ |.+.+|++++|+|+||+|||||+++|++...   ++.+. ...|+
T Consensus       152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~  199 (440)
T TIGR01026       152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIGE  199 (440)
T ss_pred             eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEEEEEEee
Confidence            378888 9999999999999999999999999999988   88775 44444

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.18  E-value=2.3e-06  Score=78.69  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .+++++ +.+.+|++++|+|+||+|||||+++|++..+   ++.|. ...|++
T Consensus       126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi~~~Ger  174 (413)
T TIGR03497       126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVIALIGER  174 (413)
T ss_pred             eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccc
Confidence            378889 9999999999999999999999999999988   88886 566664

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05922 type III secretion system ATPase; Validated

Probab=98.18  E-value=1.9e-06  Score=79.41  Aligned_cols=46  Identities=17%  Similarity=0.329  Sum_probs=39.4

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      +++.+ +.+.+|++++|+|+||+|||||+++|++..+   ++.|. ...|+
T Consensus       147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liGe  193 (434)
T PRK05922        147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIGE  193 (434)
T ss_pred             eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeCC
Confidence            56555 9999999999999999999999999999988   88886 33343

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.18  E-value=1.5e-06  Score=80.01  Aligned_cols=47  Identities=17%  Similarity=0.192  Sum_probs=41.1

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      ++ |.+|.+.+|++++|+|+||+|||||+++|+++.+   ++.|. .+.|+.
T Consensus       130 ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer  177 (418)
T TIGR03498       130 VI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGER  177 (418)
T ss_pred             EE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeee
Confidence            45 5799999999999999999999999999999998   88886 555553

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.17  E-value=1.2e-06  Score=81.91  Aligned_cols=41  Identities=22%  Similarity=0.332  Sum_probs=35.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      ++++.++.+.+|.+++|+||||+||||++..|++.+.   ...|
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G  285 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG  285 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC
Confidence            4556777788999999999999999999999999886   5544

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.17  E-value=2.5e-06  Score=78.42  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      ++-..++..|...   +.+++.+ |.+.+|++++|+|+||+|||||+++|++...   ++.+. ...|++
T Consensus       112 ~~R~~~~~~~~tG---i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGer  174 (411)
T TIGR03496       112 LKRAPIDEPLDVG---VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGER  174 (411)
T ss_pred             HhccCcceEeeee---EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEecC
Confidence            4444556666422   2377777 9999999999999999999999999999998   88775 445553

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.16  E-value=1.3e-06  Score=77.40  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=36.2

Q ss_pred             eeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee
Q 027060          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF  142 (229)
Q Consensus       100 isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~  142 (229)
                      +++.+..|+.++|+|++|||||||+++|+++++   +..+. .+
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~i  177 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITI  177 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEE
Confidence            578899999999999999999999999999998   88776 55

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.14  E-value=2e-06  Score=71.10  Aligned_cols=28  Identities=39%  Similarity=0.582  Sum_probs=26.1

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++|++++|+||+|||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999864

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.13  E-value=2e-06  Score=79.67  Aligned_cols=38  Identities=26%  Similarity=0.319  Sum_probs=35.4

Q ss_pred             cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.+++++ |.|.+|++++|+|+||+|||||+++|+++..
T Consensus       156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~  193 (451)
T PRK05688        156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE  193 (451)
T ss_pred             eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4488888 9999999999999999999999999999877

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.12  E-value=5.3e-06  Score=73.89  Aligned_cols=67  Identities=15%  Similarity=0.194  Sum_probs=45.0

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH---------HHHHhhcCCCcccCc---chhhhHHHH
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP---------KEAHARRGAPWTFNP---LLLLNCLKN  171 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~---------~~~~~~~~~~~~~~~---~~~~tv~e~  171 (229)
                      .+|++++|+||||+||||++..|++.+.   +.++. .+.+.|.         .....+.++++.++.   .+...+.++
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~  188 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA  188 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence            5789999999999999999999999998   77664 5444442         112334556554432   222455666


Q ss_pred             HHc
Q 027060          172 LRN  174 (229)
Q Consensus       172 l~~  174 (229)
                      +..
T Consensus       189 l~~  191 (318)
T PRK10416        189 IQA  191 (318)
T ss_pred             HHH
Confidence            553

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.12  E-value=2.1e-06  Score=79.17  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=33.6

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++.+ +.+.+|++++|+|+||+|||||+++|++...
T Consensus       151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~  187 (444)
T PRK08972        151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT  187 (444)
T ss_pred             eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence            366666 9999999999999999999999999999776

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.11  E-value=8.2e-07  Score=72.84  Aligned_cols=29  Identities=38%  Similarity=0.360  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-HHhcccCCCCce
Q 027060          109 IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKAS  140 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~-gll~~~~p~~G~  140 (229)
                      ++.|.||||+|||||+|.|. ..+-   ...|.
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~l---a~~G~   30 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIM---AQIGS   30 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHH---HHhCC
Confidence            36899999999999999998 4333   44554

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.10  E-value=6.2e-06  Score=71.55  Aligned_cols=116  Identities=14%  Similarity=0.081  Sum_probs=64.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e-EecCCCH--------HHH---HhhcCC------CcccCcchhhhHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQDP--------KEA---HARRGA------PWTFNPLLLLNCL  169 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~g~~~--------~~~---~~~~~~------~~~~~~~~~~tv~  169 (229)
                      ++||.|.+||||||+.+.|...+.   ...- . .+.+.+.        ...   ..+.+.      +..++...+...+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~---~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l   77 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFA---REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF   77 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH---hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence            589999999999999999998775   2211 1 3333221        100   011222      2222333346666


Q ss_pred             HHHHccccccCCCCCCCC-----CCchhhhhh----ccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          170 KNLRNQGSVYAPSFDHGV-----GDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       170 e~l~~~~~~~~~~~~~~~-----~~~~~~~l~----~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      ..+..+.....+.|++..     ..+..+.+.    ......||+.|+-..++.- ...++++++|.+
T Consensus        78 ~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~-~~~~lr~~~Dlk  144 (277)
T cd02029          78 RTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVT-EGYNVAQHADLL  144 (277)
T ss_pred             HHHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCccccc-ccHHHHHhCCeE
Confidence            777777777777776532     112222221    2367899999998733321 012666666654

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.10  E-value=3.4e-06  Score=77.83  Aligned_cols=63  Identities=16%  Similarity=0.302  Sum_probs=50.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .++.+.+++.|...   +.+++. .|.+.+|++++|+|+||+|||||+++|++..+   ++.|. .+.|+.
T Consensus       130 ~~~r~~i~~~l~TG---iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGer  193 (432)
T PRK06793        130 AFEREEITDVFETG---IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGER  193 (432)
T ss_pred             chheechhhccCCC---CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCC
Confidence            46677777777543   236666 59999999999999999999999999999998   88886 555553

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.10  E-value=2.9e-06  Score=68.98  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++++++++.+| +++|+|+||+||||++.+|.-.+-
T Consensus        10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~   44 (202)
T PF13476_consen   10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG   44 (202)
T ss_dssp             EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            45677777776 999999999999999999988875

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.07  E-value=4.7e-06  Score=67.46  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |++++|+||||||||||++.|++.+.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            67899999999999999999999876

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.06  E-value=3.9e-06  Score=77.49  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=41.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      +++++ +.+.+|++++|+|+||+|||||+++|++...   ++.+. ...|++
T Consensus       147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGer  194 (434)
T PRK08472        147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGER  194 (434)
T ss_pred             Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCcc
Confidence            78899 9999999999999999999999999999887   77775 555553

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.04  E-value=4e-06  Score=77.60  Aligned_cols=50  Identities=20%  Similarity=0.223  Sum_probs=41.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC---c-eEecCCCHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---A-SSFDSQDPKE  149 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~---G-~~~~g~~~~~  149 (229)
                      +++ .-|.+.+|++++|+|+||+|||||+++|+++.+   ++.   | ..+.|.++..
T Consensus       165 aID-~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~---~d~iv~g~Igerg~ev~e  218 (455)
T PRK07960        165 AIN-ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ---ADVIVVGLIGERGREVKD  218 (455)
T ss_pred             eee-ecccccCCcEEEEECCCCCCccHHHHHHhCCCC---CCEEEEEEEEECCeEHHH
Confidence            443 449999999999999999999999999999988   774   4 3666776543

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.04  E-value=3.3e-06  Score=68.35  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |++++|+||||||||||++.|++..+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.02  E-value=4.3e-06  Score=77.33  Aligned_cols=48  Identities=17%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      +.+++++ |.+.+|++++|+|+||+|||||+++|+++.+.  .+.+. .+.|
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liG  200 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIG  200 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEEC
Confidence            4478777 99999999999999999999999999998850  33455 4444

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.00  E-value=5.7e-06  Score=87.12  Aligned_cols=46  Identities=11%  Similarity=0.165  Sum_probs=37.6

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHH
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEV  127 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L  127 (229)
                      ++..++...+....    .|+||+|+|++|++++|+|+||||||||+..+
T Consensus       936 l~~~~i~i~~~~~~----~lk~isl~i~~gei~~itG~nGsGKStL~~~~  981 (1809)
T PRK00635        936 PVPADITIKNAYQH----NLKHIDLSLPRNALTAVTGPSASGKHSLVFDI  981 (1809)
T ss_pred             cccceEEEeccccc----cccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence            34556666665333    58899999999999999999999999988766

>PRK06936 type III secretion system ATPase; Provisional

Probab=98.00  E-value=5.2e-06  Score=76.66  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=37.6

Q ss_pred             cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|++...   ++--
T Consensus       150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~---~dv~  191 (439)
T PRK06936        150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE---VDVT  191 (439)
T ss_pred             cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC---CCEE
Confidence            3478899 9999999999999999999999999999887   6543

>PRK15453 phosphoribulokinase; Provisional

Probab=98.00  E-value=3.3e-05  Score=67.55  Aligned_cols=119  Identities=13%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCCCH-----HH------HHhhcCCC------cccCcchhh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQDP-----KE------AHARRGAP------WTFNPLLLL  166 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~~~-----~~------~~~~~~~~------~~~~~~~~~  166 (229)
                      +.-+++|.|.+||||||+.+.|...+.   ... .. .+.+.+.     ..      ...+.+..      ..++...+.
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~   80 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE   80 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence            567899999999999999999988765   221 12 3333221     11      11223332      222222335


Q ss_pred             hHHHHHHccccccCCCCCCCC-----CCchhhhh----hccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          167 NCLKNLRNQGSVYAPSFDHGV-----GDPVEDDI----LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       167 tv~e~l~~~~~~~~~~~~~~~-----~~~~~~~l----~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      ..+..+..+.....+.|++..     ..+..+.+    .+....+||+.|+-..++.- ....+++++|.+
T Consensus        81 ~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~-~~~~lr~~~Dlk  150 (290)
T PRK15453         81 QLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVT-DQVDVAQHVDLL  150 (290)
T ss_pred             HHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccccc-ccHHHHHhCCee
Confidence            555555555444444444221     22222221    23356889999998776431 123555555543

>PRK07667 uridine kinase; Provisional

Probab=97.99  E-value=1.5e-05  Score=65.85  Aligned_cols=101  Identities=16%  Similarity=0.278  Sum_probs=56.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc--e---EecCCCHH-HHHhhcCCCcc-------cCcchh-hhHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--S---SFDSQDPK-EAHARRGAPWT-------FNPLLL-LNCLKN  171 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G--~---~~~g~~~~-~~~~~~~~~~~-------~~~~~~-~tv~e~  171 (229)
                      ..-+|||-|+.|||||||.+.|...+.   . .|  .   ..++.-.. ..+...+....       ++...+ ..++..
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~---~-~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~   91 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMK---Q-EGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRK   91 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH---h-CCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHh
Confidence            345899999999999999999999885   2 22  1   22321111 11112222110       111112 234555


Q ss_pred             HHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCee
Q 027060          172 LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  211 (229)
Q Consensus       172 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~L  211 (229)
                      +..+..+..|.|+............. ....++|+|++++
T Consensus        92 L~~~~~i~~P~~d~~~~~~~~~~~~~-~~~~vvIvEG~~l  130 (193)
T PRK07667         92 LQNETKLTLPFYHDETDTCEMKKVQI-PIVGVIVIEGVFL  130 (193)
T ss_pred             hcCCCeEEEeeeccccccccccceec-CCCCEEEEEehhh
Confidence            65555666677777665443222222 3468999999985

>PRK06820 type III secretion system ATPase; Validated

Probab=97.98  E-value=7.6e-06  Score=75.68  Aligned_cols=48  Identities=15%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      +.+++.+ +.+.+|++++|+|+||+|||||+++|++...   ++.+. ...|+
T Consensus       151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~---~dv~V~~~iGe  199 (440)
T PRK06820        151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA---ADVMVLALIGE  199 (440)
T ss_pred             Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCC---CCEEEEEEEcc
Confidence            3488888 9999999999999999999999999999887   77654 33444

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=4.4e-06  Score=81.71  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=35.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      ++++.++.+.+|++++|+||||+||||++..|++.+.   ...|
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G  214 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG  214 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC
Confidence            4667888888899999999999999999999999885   4544

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=6.5e-06  Score=75.82  Aligned_cols=28  Identities=32%  Similarity=0.579  Sum_probs=25.8

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +.+|++++|+||||+||||+++.|++..
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999999864

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.96  E-value=1.5e-05  Score=83.10  Aligned_cols=45  Identities=29%  Similarity=0.337  Sum_probs=37.0

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      +.+..|++..| +++|+|+|||||||+|++|++++.   +..|. .+++.
T Consensus        18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~---~~~~~~~f~~~   63 (1486)
T PRK04863         18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNT   63 (1486)
T ss_pred             ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc---CCCCeEEECCc
Confidence            34567888875 999999999999999999999998   77775 55543

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.94  E-value=1.2e-05  Score=75.67  Aligned_cols=56  Identities=18%  Similarity=0.340  Sum_probs=43.0

Q ss_pred             eeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEec
Q 027060           83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (229)
Q Consensus        83 ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~  143 (229)
                      +..++|+..    .++|+-+.+ +|.+++|.||+||||||+.+.|+..+.....+.|.++.
T Consensus       265 ~A~~~g~~R----LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR  320 (512)
T PRK13477        265 IAVRCGSTR----LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR  320 (512)
T ss_pred             EEEEeCCeE----EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence            455666544    789999988 88999999999999999999999765422356665443

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.91  E-value=1.4e-05  Score=67.58  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=33.8

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +-+|++|++.+|++++|.||||+|||||++++++..
T Consensus        19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~   54 (218)
T cd03286          19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV   54 (218)
T ss_pred             EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence            678999999999999999999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=1.1e-05  Score=73.20  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++++.++.+.+|.+++|+||||+||||++..|++.+.
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35667788899999999999999999999999998753

>PRK01889 GTPase RsgA; Reviewed

Probab=97.89  E-value=7.8e-06  Score=73.90  Aligned_cols=45  Identities=27%  Similarity=0.319  Sum_probs=37.7

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      ++.+.-.+.+|++++|+|+||+|||||++.|+|...   +..|. .+.+
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~~~~  230 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVREDD  230 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEEECC
Confidence            334555677899999999999999999999999998   88896 5554

>PRK15494 era GTPase Era; Provisional

Probab=97.86  E-value=1.2e-05  Score=72.31  Aligned_cols=51  Identities=31%  Similarity=0.302  Sum_probs=44.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCc-------EEEEEcCCCCcHHHHHHHHHHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKH-------IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge-------~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -++..++++.|+...   .+++.++++++.|+       .++|+|.+|+|||||++.|.|.
T Consensus        18 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~   75 (339)
T PRK15494         18 DTEALAAAVREDAST---GSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE   75 (339)
T ss_pred             ccccccccccCCCCc---ccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence            377889999998532   27889999999999       9999999999999999999884

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.84  E-value=2.6e-05  Score=79.59  Aligned_cols=48  Identities=17%  Similarity=0.358  Sum_probs=38.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeee---ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASN---VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~---i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -|.++|+...++..        .|+|+   +..+.+++|+|||||||||+|..|+..+-
T Consensus         5 ~l~~~nf~s~~~~~--------~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLy   55 (1047)
T PRK10246          5 SLRLKNLNSLKGEW--------KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALY   55 (1047)
T ss_pred             EEEeecceeEcCCc--------eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            37788887444332        57888   45689999999999999999999997664

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.83  E-value=2.2e-05  Score=64.96  Aligned_cols=41  Identities=20%  Similarity=0.356  Sum_probs=33.2

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCCCHH
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQDPK  148 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~~~~  148 (229)
                      .+|.+++|+|+||||||||.+.|.+.+.   +.. |. .++|.++.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~---~~~~~~~~ld~d~~~   64 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALH---ELGVSTYLLDGDNVR   64 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH---hCCCCEEEEcCEeHH
Confidence            5789999999999999999999999886   543 34 67765543

>TIGR00606 rad50 rad50

Probab=97.81  E-value=2.1e-05  Score=81.88  Aligned_cols=59  Identities=17%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHH----HHhcccCCC-Cce-EecCCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQ-KAS-SFDSQD  146 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~----gll~~~~p~-~G~-~~~g~~  146 (229)
                      |.+.|+- +|++...   --.-|.|.   ..+++|+|||||||||++.+|.    |..+   |. .|. .+.+.+
T Consensus         6 l~i~g~r-Sf~~~~~---~~~~I~F~---~~~~~I~G~NGaGKTTil~ai~~al~G~~~---~~~~g~~~i~~~~   70 (1311)
T TIGR00606         6 MSILGVR-SFGIEDK---DKQIIDFF---SPLTILVGPNGAGKTTIIECLKYICTGDFP---PGTKGNTFVHDPK   70 (1311)
T ss_pred             eeeecee-cCCCccc---cceeeecc---cceEEEECCCCCCHHHHHHHHHHHhcCCCC---CCCCCceEecCCC
Confidence            6778874 7764110   01124443   3599999999999999999994    8777   75 464 665543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.81  E-value=3.5e-05  Score=74.86  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=37.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCc-EEEEEcCCCCcHHHHHHHHHHHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge-~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -|.++|+...|+.        +.++|....|+ +++|+|+||+|||||+++|.-.+
T Consensus         5 ~l~l~nf~~~~~~--------~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~L   52 (650)
T TIGR03185         5 QLTLENFGPYRGR--------QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLAL   52 (650)
T ss_pred             EEEEeceEEEcCC--------ceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4788899765553        15677777765 89999999999999999986554

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.81  E-value=1.6e-05  Score=70.20  Aligned_cols=37  Identities=32%  Similarity=0.479  Sum_probs=35.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++++++...++.+++|+|++|||||||++.|.+.+.
T Consensus        23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999876

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd00879 Sar1 Sar1 subfamily

Probab=97.79  E-value=1.7e-05  Score=64.35  Aligned_cols=33  Identities=27%  Similarity=0.189  Sum_probs=28.7

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +|+++++...++++ +|+|++|||||||++.+.+
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence            47788888777655 9999999999999999987

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK13695 putative NTPase; Provisional

Probab=97.77  E-value=1.4e-05  Score=64.56  Aligned_cols=24  Identities=38%  Similarity=0.866  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++|+|+||+|||||++.|.+.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999876

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.77  E-value=5.2e-05  Score=61.22  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=31.8

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--EecCCC
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQD  146 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~g~~  146 (229)
                      .+|++++|+|++||||||+.+.|++.+.   +..+.  .+++..
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~---~~g~~v~~id~D~   42 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLR---EAGYPVEVLDGDA   42 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEcCcc
Confidence            4799999999999999999999999987   55443  455543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.77  E-value=3.7e-05  Score=67.50  Aligned_cols=41  Identities=22%  Similarity=0.425  Sum_probs=33.4

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      |.=..+.+++|+|+||||||||++.+.+.+.   ...+. .+.|.
T Consensus        99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~---~~~~~~VI~gD  140 (290)
T PRK10463         99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLK---DSVPCAVIEGD  140 (290)
T ss_pred             HHhcCCeEEEEECCCCCCHHHHHHHHHHHhc---cCCCEEEECCC
Confidence            4445789999999999999999999999887   66665 55554

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.77  E-value=2.4e-05  Score=58.63  Aligned_cols=27  Identities=37%  Similarity=0.759  Sum_probs=24.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+..+.|+||+|+||||+++.|+..+.
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence            367899999999999999999999887

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.76  E-value=3.7e-05  Score=63.96  Aligned_cols=29  Identities=31%  Similarity=0.609  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      .++|+|+||||||||++.|.+.+.   +..+.
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~---~~~~~   31 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALR---QKYQL   31 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC---cCCcE
Confidence            689999999999999999999987   66554

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00368 Mg chelatase-related protein

Probab=97.75  E-value=1.3e-05  Score=75.50  Aligned_cols=47  Identities=28%  Similarity=0.435  Sum_probs=41.5

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      +++.+++.+..|+.+.|+||||+|||||++.|.++++   |.+|. .+.+.
T Consensus       200 ~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp---~~~~~~~le~~  247 (499)
T TIGR00368       200 AKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP---PLTNEEAIETA  247 (499)
T ss_pred             HHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC---CCCCcEEEecc
Confidence            6789999999999999999999999999999999998   88774 54443

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]

Probab=97.71  E-value=3.1e-05  Score=69.08  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=33.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.++.+++.+++.+.|+||||+||||+|.+|-.-+.
T Consensus        13 ~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~   49 (440)
T COG3950          13 CFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALN   49 (440)
T ss_pred             hhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHH
Confidence            3558889999999999999999999999999987765

>cd04155 Arl3 Arl3 subfamily

Probab=97.71  E-value=2.7e-05  Score=62.03  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+||||||||++.|.+.
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            456999999999999999999996

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00618 sbcc exonuclease SbcC

Probab=97.71  E-value=3.9e-05  Score=78.29  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=34.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -|+++|+. +|.+..       .|+|+-. +.+++|+|||||||||||.+|+--+
T Consensus         5 ~L~l~nf~-s~~~~~-------~idF~~~-~gl~~I~G~nGaGKSTildAI~~aL   50 (1042)
T TIGR00618         5 RLTLKNFG-SYKGTH-------TIDFTAL-GPIFLICGKTGAGKTTLLDAITYAL   50 (1042)
T ss_pred             EEEEeCee-ccCCCc-------eeeecCC-CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            37788885 565432       3456544 2799999999999999999999544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
3c8u_A	208	Crystal Structure Of Putative Fructose Transport Sy		2e-09
2ga8_A	359	Crystal Structure Of Yfh7 From Saccharomyces Cerevi		7e-04

>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN------KIWPQKASSFDSQ--DPKEAHARRGAPW 158
           + +V L+G PG+GKSTL+  +   ++      ++ P      D++  +P+    R+GAP 
Sbjct: 22  RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDNRLLEPRGLLPRKGAPE 81
Query: 159 TFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 218
           TF              Q  V  P FD      +     VG + +V I++GNYL  D   W
Sbjct: 82  TFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW 141
Query: 219 KDVSSMFD 226
           +D+++++D
Sbjct: 142 RDLTAIWD 149

>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 29/106 (27%)
Query: 145 QDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG---------------------------- 176
           +DP+ AH RRG+P TF                                            
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLXKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
             ++ P F+H + DP  D   +    ++VI++G YL  D   WK +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKI 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	1e-40
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	4e-33
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	2e-06
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	6e-24
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	1e-22
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	3e-22
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	5e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	1e-09
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	3e-09
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	5e-09
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	6e-08
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	2e-07
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	8e-06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	4e-05
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	4e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	5e-05
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	8e-05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	2e-04

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score =  137 bits (346), Expect = 1e-40
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 86  VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDS 144
              AL Q +L    L      + +V L+G PG+GKSTL+  +   ++      +    D 
Sbjct: 3   TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60

Query: 145 -------QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 197
                   +P+    R+GAP TF+          L++Q  V  P FD      +     V
Sbjct: 61  FHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEV 120

Query: 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
           G + +V I++GNYL  D   W+D+++++D   
Sbjct: 121 GPECRVAIIEGNYLLFDAPGWRDLTAIWDVSI 152

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score =  121 bits (305), Expect = 4e-33
 Identities = 40/234 (17%), Positives = 68/234 (29%), Gaps = 50/234 (21%)

Query: 43  RRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALAS 102
                 +        +    +   +  ++  E+   +    D V D   Q   P    A 
Sbjct: 58  EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114

Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-------ASSFDS----------- 144
             N +    +    G   +   A V   +N     +           D            
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLF 174

Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----------------------------- 175
           +DP+ AH RRG+P TF+    L   K L                                
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234

Query: 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
             ++ P F+H + DP  D   +    ++VI++G YL  D   WK +     +  
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTG 288

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 87  YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD 146
              LA  +L         N +  V L G PG+GKST+A E+ + IN+ +    S   +  
Sbjct: 4   THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63

Query: 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG 186
                 +        P++ L           V     + G
Sbjct: 64  EVNDRLK--------PMVNLVDSLKTLQPNKVAEMIENQG 95

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score = 96.2 bits (239), Expect = 6e-24
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y +   R           N +    I+ +AG    GKST A  +   +++    +     
Sbjct: 57  YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116

Query: 144 SQD----------PKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVE 192
           + D           +    ++G P +++   L+  + +L++   +V AP + H + D + 
Sbjct: 117 TTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIP 176

Query: 193 DDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKW 229
           D     +Q  ++I++G  +               VS   D   
Sbjct: 177 DGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI 219

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score = 92.7 bits (230), Expect = 1e-22
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 12/149 (8%)

Query: 92  QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDS---- 144
              L       +  V  I+G+AG    GKST A  +   + +          + D     
Sbjct: 75  AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYP 134

Query: 145 ---QDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQ 200
                 +    R+G P ++N   L+  + ++++      AP + H   D +     V   
Sbjct: 135 NAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRH 194

Query: 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
             ++I++G  +   G     VS +FD   
Sbjct: 195 PDILILEGLNVLQTGP-TLMVSDLFDFSL 222

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score = 91.6 bits (227), Expect = 3e-22
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y    Q L   +             I+G+AG    GKST +  +   +++          
Sbjct: 69  YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128

Query: 144 SQD----------PKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVE 192
           + D           +    R+G P +++   LL  L  +++ Q +V  P + H   D V 
Sbjct: 129 TTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVR 188

Query: 193 DDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKW 229
               +  Q  +VI++G  +   G       +   VS  FD   
Sbjct: 189 GQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSL 231

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S 141
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57

Query: 142 FDS---QDPKEAHARRGAPWTFNP------LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192
            D    +  K  H      + +         L     + L+    +  P +DH      +
Sbjct: 58  MDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK 117

Query: 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228
             + +     +++++G +L       K+    FD  
Sbjct: 118 RTVYLS-DSDMIMIEGVFLQR-----KEWRPFFDFV 147

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 1e-12
 Identities = 42/254 (16%), Positives = 73/254 (28%), Gaps = 51/254 (20%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPV--FGKTRSL 58
            D   +   P++ LS    +              G L   W   +   + V  F +   L
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL 87

Query: 59  VQN----KTSLKVLCSQRREIPVVEARCMDEVY---DALAQ----RLLPTSAL---ASNV 104
             N     + +K    Q   +  +     D +Y      A+    RL P   L      +
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPW-TFN-- 161
                V + G  G+GK+ +A +V           +     +   +        W      
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL---------SYKVQCKMDFKIF------WLNLKNC 192

Query: 162 --PLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVE-DDILVGLQHKVVIVDGNY----LFL 213
             P  +L  L+ L  Q    +    DH     +    I   L+   ++    Y    L L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVL 250

Query: 214 DGGVW-KDVSSMFD 226
              V      + F+
Sbjct: 251 L-NVQNAKAWNAFN 263

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 27/129 (20%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----SFDSQDPKEAHARRGA-----PWT 159
           I+G++G   +GK+TLA    + + K  P  +      F   + +    + G         
Sbjct: 23  IIGISGVTNSGKTTLA----KNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEA 78

Query: 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219
            N   +++ +            S D    +             ++I++G  LF      K
Sbjct: 79  LNMEKMMSAISCWMESARHSVVSTDQESAEE----------IPILIIEGFLLFNY----K 124

Query: 220 DVSSMFDEK 228
            + ++++  
Sbjct: 125 PLDTIWNRS 133

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 21/131 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD------PKEAHARRG-----AP 157
           ++G+AG   +GK+TLA    + + +   ++ +     D             R       P
Sbjct: 8   VIGIAGGTASGKTTLA----QALARTLGERVALL-PMDHYYKDLGHLPLEERLRVNYDHP 62

Query: 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217
             F+  L L   + L     V  P +D            V     VVI++G  +      
Sbjct: 63  DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVR-PAPVVILEGILVLYP--- 118

Query: 218 WKDVSSMFDEK 228
            K++  + D K
Sbjct: 119 -KELRDLMDLK 128

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 26/136 (19%), Positives = 58/136 (42%), Gaps = 21/136 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS------SFDS----QDPKEAH-ARRG-- 155
           ++G++G   +GKST+  +++  + +   ++        S D        ++   A +G  
Sbjct: 27  LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 86

Query: 156 ---APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
               P  F+  L+   LKN+    +V  P++D      + +  +V     VV+ +G  +F
Sbjct: 87  NFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-PADVVLFEGILVF 145

Query: 213 LDGGVWKDVSSMFDEK 228
                 +++  MF  +
Sbjct: 146 YS----QEIRDMFHLR 157

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS------SFDS----QDPKEAH-ARRG-- 155
           ++G++G   +GKS++ A++V+ + +             S DS       ++   A +G  
Sbjct: 24  LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 83

Query: 156 ---APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
               P  F+  L+L  LK +    +V  P +D       E+ + V     VV+ +G   F
Sbjct: 84  NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PADVVLFEGILAF 142

Query: 213 LDGGVWKDVSSMFDEK 228
                 ++V  +F  K
Sbjct: 143 YS----QEVRDLFQMK 154

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 28/151 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-------SFDSQDPKEAHARRGAP 157
            KH I+ + G  GAG ST+     +   +   +  S        F+  D K    RR A 
Sbjct: 3   KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAA 62

Query: 158 WTFNPL----------LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL-------- 199
                            L    +     G     ++ H   +     +  G         
Sbjct: 63  GDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFD 122

Query: 200 -QHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
               ++  +G +  +      +++ + D K 
Sbjct: 123 SDSHLLFYEGLHGAVVNSE-VNIAGLADLKI 152

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 24/109 (22%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF------------DSQDPKEAH----- 151
            +  +GP G+GKS  + ++   + + +  + S              D     E       
Sbjct: 33  FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92

Query: 152 -ARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 193
              RG P T +  LL   L  + N      Q +V  P +D        D
Sbjct: 93  LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   +
Sbjct: 25  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        +
Sbjct: 26  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           K +  + GP G GKST    +  +++ 
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDN 28

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I +VE+      +   AQ+LL    L  +    H VG+ G PG GKST    +   +
Sbjct: 49  RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
              +   +               +   VGL+GPPGAGKST      + +
Sbjct: 50  AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.93
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.93
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.92
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.92
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.92
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.92
1g6h_A	257	High-affinity branched-chain amino acid transport	99.92
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.92
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.92
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.92
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.92
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.92
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.91
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.91
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.91
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.91
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.91
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.91
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.91
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.91
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.9
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.9
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.9
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.9
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.89
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.89
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.89
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.88
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.87
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.86
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.85
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.84
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.84
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.84
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.84
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.83
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.82
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.78
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.77
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.77
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.73
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.72
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.65
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.61
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.61
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.6
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.6
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.59
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.59
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.57
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.54
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.54
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.5
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.5
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.49
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.45
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.43
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.43
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.42
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.4
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.37
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.36
2og2_A	359	Putative signal recognition particle receptor; nuc	99.36
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.33
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.32
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.31
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.3
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.3
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.29
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.28
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.27
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.25
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.23
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.23
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.23
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.22
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.22
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.21
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.21
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.21
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.18
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.16
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.15
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.14
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.14
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.12
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.11
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.09
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.08
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.08
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.06
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.05
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.04
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.03
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.01
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.99
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.98
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.98
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.96
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.92
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.92
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.91
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.91
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.87
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.85
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.83
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.83
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.83
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.83
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.82
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.8
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.79
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.79
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.76
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.74
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.74
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.74
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.73
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.67
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.66
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.66
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.64
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.6
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.59
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.57
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.56
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.56
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.5
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.48
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.48
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.47
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.46
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.43
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.43
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.42
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.39
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.38
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.36
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.36
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.34
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.33
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.33
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.29
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.27
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.26
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.25
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.25
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.25
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.23
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.22
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.22
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.21
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.2
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.18
3ice_A	422	Transcription termination factor RHO; transcriptio	98.13
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.12
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.07
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.06
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.04
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.03
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.03
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.01
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.99
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.96
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.9
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.9
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.88
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.87
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.85
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.84
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.83
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.82
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.82
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.81
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.81
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.81
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.8
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.78
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.74
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.74
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.72
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.71
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.66
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.65
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.65
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.61
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.6
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.6
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.6
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.58
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.56
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.54
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.5
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.49
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.48
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.45
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.44
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.41
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.4
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.38
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.37
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.34
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.33
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.33
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.33
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.3
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.28
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.28
1via_A	175	Shikimate kinase; structural genomics, transferase	97.28
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.28
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.28
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.25
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.24
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.24
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.21
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.21
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.2
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.19
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.17
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.17
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.16
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.16
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.16
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.15
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.15
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.14
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.13
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.13
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.12
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.11
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.1
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.1
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.09
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.04
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.04
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.04
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.02
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.01
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.99
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.98
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.95
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.95
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.94
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.93
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.91
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.9
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.89
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.89
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.89
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.88
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.88
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.87
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.85
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.85
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.85
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.84
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.83
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.83
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.82
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.8
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.8
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.8
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.8
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.78
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.78
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.78
3bos_A	242	Putative DNA replication factor; P-loop containing	96.78
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.77
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.77
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.76
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.76
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.75
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.75
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.74
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.73
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.73
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.72
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.72
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.71
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.71
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.71
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.68
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.68
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.67
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.67
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.67
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.66
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.66
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.66
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.65
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.64
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.63
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.63
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.62
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.61
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.61
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.6
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.6
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.6
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.59
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.59
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.58
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.58
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.58
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.58
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.58
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.57
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.55
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.55
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.54
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.54
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.54
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.53
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.53
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.52
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.52
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.52
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.52
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.52
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.51
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.51
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.51
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.51
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.5
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.5
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.5
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.5
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.49
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.48
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.48
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.48
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.47
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.46
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.46
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.46
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.44
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.44
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.44
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.43
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.43
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.43
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.42
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.42
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.42
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.41
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.41
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.41
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.41
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.4
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.38
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.38
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.37
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.36
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.36
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.36
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.36
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.34
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.34
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.34
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.33
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.32
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.32
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.31
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.31
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.31
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.31
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.31
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.3
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.29
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.29
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.28
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.27
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.27
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.26
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.26
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.26
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.24
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.23
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.23
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.23
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.21
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.2
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.2
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.2
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.2
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.19
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.19
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.18
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.17
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.16
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.14
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.13
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.13
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.13
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.13
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.13
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.13
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.12
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.12
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.08
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.08
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.05
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.04
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.04
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.03
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.03
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.02
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.01
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.98
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.97
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.92
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.92
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.91
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.89
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.88
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.85
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.85
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.81
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.81
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.81
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.8
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.78
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.78
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.75
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.75
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.72
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.71
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.71
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.7
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.67
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.66
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.65
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.58
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.58
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.57
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.55
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.48
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.47
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.46
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.45
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.43
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.39
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.34
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.33
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.33
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.32
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.28
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.25
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.25
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.24
3pvs_A	447	Replication-associated recombination protein A; ma	95.24
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.23
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.22
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.22
2qgz_A	308	Helicase loader, putative primosome component; str	95.08
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.07
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.06
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.01
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	94.99
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.97
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.95
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.95
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.92
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.9
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.89
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.89
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.88
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.86
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	94.86
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.86
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.85
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.82
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	94.82
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.81
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.76

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.93  E-value=7.3e-27  Score=208.76  Aligned_cols=143  Identities=12%  Similarity=0.174  Sum_probs=101.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH----HH-
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP----KE-  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~----~~-  149 (229)
                      ++|+++||+|.|++..    +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++    .. 
T Consensus         3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~   75 (359)
T 3fvq_A            3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL   75 (359)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred             cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4799999999998765    8999999999999999999999999999999999999   99997 8888765    11 


Q ss_pred             HHhhcCCCcccCcch---hhhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEe
Q 027060          150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIV  206 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~  206 (229)
                      ...++.+++.||.+.   .+||.||+.++.........               ....++....++.|+++||     |+.
T Consensus        76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~  155 (359)
T 3fvq_A           76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP  155 (359)
T ss_dssp             CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred             chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            122345666666543   48999999997643211100               1123344445555555554     555


Q ss_pred             cCCeeeeccc-------CHHHHHHHH
Q 027060          207 DGNYLFLDGG-------VWKDVSSMF  225 (229)
Q Consensus       207 d~~~LlLDEP-------~~~~l~~~l  225 (229)
                      +|++|+||||       .+.++++.+
T Consensus       156 ~P~lLLLDEPts~LD~~~r~~l~~~l  181 (359)
T 3fvq_A          156 DPELILLDEPFSALDEQLRRQIREDM  181 (359)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            6666666666       466665533

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.93  E-value=1.2e-26  Score=207.66  Aligned_cols=151  Identities=20%  Similarity=0.238  Sum_probs=107.6

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----  148 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----  148 (229)
                      ++++|+++||+|.|+.......+|+||||+|++||++||+||||||||||+|+|+|+++   |++|. .++|+++.    
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~   97 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE   97 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence            45689999999999754333458999999999999999999999999999999999999   99997 88987532    


Q ss_pred             -HH-HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhh
Q 027060          149 -EA-HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDIL  196 (229)
Q Consensus       149 -~~-~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~  196 (229)
                       .. ..+..+++.||.+   +.+||.+|+.++.....                           ..++.++.+++..+.+
T Consensus        98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArA  177 (366)
T 3tui_C           98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA  177 (366)
T ss_dssp             HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence             11 2234555555554   34899999987643211                           1223345555555555


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..++++|++|||+..||......+.+++..
T Consensus       178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~  208 (366)
T 3tui_C          178 LASNPKVLLCDQATSALDPATTRSILELLKD  208 (366)
T ss_dssp             TTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            6566666666666666666667888777754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.93  E-value=1.5e-26  Score=194.37  Aligned_cols=146  Identities=17%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----  148 (229)
                      +++|+++|+++.|++..    +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|+++.     
T Consensus         2 ~~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (224)
T 2pcj_A            2 AEILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK   74 (224)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred             CcEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence            45799999999998754    8999999999999999999999999999999999999   99997 88886531     


Q ss_pred             HH---H-hhcCC-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhh
Q 027060          149 EA---H-ARRGA-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDIL  196 (229)
Q Consensus       149 ~~---~-~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~  196 (229)
                      ..   + ..+++ ++.+..+..+|+.||+.++...+.                           ..++.++.+++..+.+
T Consensus        75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lara  154 (224)
T 2pcj_A           75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARA  154 (224)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence            11   1 22343 333333344799999987532110                           0112233344444444


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..++++|++|||+..||...+..+.+++..
T Consensus       155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  185 (224)
T 2pcj_A          155 LANEPILLFADEPTGNLDSANTKRVMDIFLK  185 (224)
T ss_dssp             TTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            4444444555555555555457777776643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.92  E-value=9.3e-27  Score=209.50  Aligned_cols=144  Identities=15%  Similarity=0.213  Sum_probs=102.6

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhh
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HAR  153 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~  153 (229)
                      .+|+++||+|.|++..    +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|+++... ..+
T Consensus         2 ~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~~   74 (381)
T 3rlf_A            2 ASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAE   74 (381)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGGG
T ss_pred             CEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHHH
Confidence            4699999999998765    8999999999999999999999999999999999999   99997 8888764321 123


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccccccCCCC--------------C-CCCCCchhhhhhccCCccE-----EEecCCe
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQGSVYAPSF--------------D-HGVGDPVEDDILVGLQHKV-----VIVDGNY  210 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~--------------~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~  210 (229)
                      +++++.||.+   +.+||.||+.++........              . ....++....++.|+++||     |+.+|++
T Consensus        75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l  154 (381)
T 3rlf_A           75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV  154 (381)
T ss_dssp             SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE
T ss_pred             CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE
Confidence            4555666554   34899999998654321100              0 1123344455555555555     5566666


Q ss_pred             eeeccc-------CHHHHHHHHh
Q 027060          211 LFLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       211 LlLDEP-------~~~~l~~~l~  226 (229)
                      ++||||       .+.++++++.
T Consensus       155 LLLDEPts~LD~~~~~~l~~~l~  177 (381)
T 3rlf_A          155 FLLDEPLSNLDAALRVQMRIEIS  177 (381)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCcCCCHHHHHHHHHHHH
Confidence            666666       4666666654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.92  E-value=2.8e-26  Score=197.25  Aligned_cols=95  Identities=17%  Similarity=0.267  Sum_probs=75.3

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----  148 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----  148 (229)
                      |+++|+++||++.|++..    +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|+++.    
T Consensus        21 m~~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~   93 (263)
T 2olj_A           21 MLQMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDT   93 (263)
T ss_dssp             -CCSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTC
T ss_pred             chheEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccc
Confidence            345799999999998654    8999999999999999999999999999999999999   99997 88886541    


Q ss_pred             ---HHHhhcCC-CcccCcchhhhHHHHHHcc
Q 027060          149 ---EAHARRGA-PWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus       149 ---~~~~~~~~-~~~~~~~~~~tv~e~l~~~  175 (229)
                         ..+..+++ ++.+..+..+|+.||+.++
T Consensus        94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~  124 (263)
T 2olj_A           94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLA  124 (263)
T ss_dssp             CHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred             cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence               12233443 3333334457999999874

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.92  E-value=7.9e-26  Score=194.69  Aligned_cols=146  Identities=15%  Similarity=0.168  Sum_probs=102.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----  148 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----  148 (229)
                      +++|+++||++.|++..    +|+++||+|++||++||+||||||||||+|+|+|+++   |++|. .++|+++.     
T Consensus         9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~   81 (266)
T 4g1u_C            9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK   81 (266)
T ss_dssp             CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred             cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence            45899999999998765    8999999999999999999999999999999999999   99997 88887542     


Q ss_pred             HHHhhcCC-CcccCcchhhhHHHHHHccccccCC-------------------------CCCCCCCCchhhhhhccC---
Q 027060          149 EAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAP-------------------------SFDHGVGDPVEDDILVGL---  199 (229)
Q Consensus       149 ~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~---  199 (229)
                      .....+++ ++.+.....+|+.||+.++...+..                         .++.++.+++..+.++..   
T Consensus        82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~  161 (266)
T 4g1u_C           82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ  161 (266)
T ss_dssp             HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred             HHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence            22333443 3333333448999999886432210                         122334444444444444   


Q ss_pred             ---CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 ---QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ---~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                         ++++|++|||+..||...+..+.+++..
T Consensus       162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l~~  192 (266)
T 4g1u_C          162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ  192 (266)
T ss_dssp             SSCCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence               5555555555555555567777777653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.92  E-value=2.9e-26  Score=196.39  Aligned_cols=148  Identities=17%  Similarity=0.209  Sum_probs=100.8

Q ss_pred             CCCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--
Q 027060           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        73 ~~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--  149 (229)
                      ..|++|+++||++.|++..    +|+++||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|+++..  
T Consensus        11 ~~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~   83 (256)
T 1vpl_A           11 HHMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP   83 (256)
T ss_dssp             ---CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred             ccCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence            3577899999999998654    8999999999999999999999999999999999999   99997 888875421  


Q ss_pred             HHhhcCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060          150 AHARRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       150 ~~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~  199 (229)
                      ...+..+.+.+|.   +..+|+.||+.++...+.                           ..++.++.+++..+.++..
T Consensus        84 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~  163 (256)
T 1vpl_A           84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV  163 (256)
T ss_dssp             HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            1122334444443   344799999987432110                           0122334444444444555


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|||+..||...+..+.+++..
T Consensus       164 ~p~lllLDEPts~LD~~~~~~l~~~l~~  191 (256)
T 1vpl_A          164 NPRLAILDEPTSGLDVLNAREVRKILKQ  191 (256)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            5555555555555555567777777653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.92  E-value=5.5e-26  Score=196.63  Aligned_cols=146  Identities=16%  Similarity=0.177  Sum_probs=101.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~  149 (229)
                      ++|+++||++.|++..   .+|+||||+|++||++||+||||||||||+|+|+|+++   |++|. .++|+++.     .
T Consensus         6 ~~l~i~~ls~~y~~~~---~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~   79 (275)
T 3gfo_A            6 YILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI   79 (275)
T ss_dssp             EEEEEEEEEEECTTSC---EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred             cEEEEEEEEEEECCCC---eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence            4799999999997532   27999999999999999999999999999999999999   99997 88997641     1


Q ss_pred             HHhhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhcc
Q 027060          150 AHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       150 ~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                      ...+..+++.||.+    ..+||.+|+.++.....                           ..++.++.+++..+.++.
T Consensus        80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~  159 (275)
T 3gfo_A           80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV  159 (275)
T ss_dssp             HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred             HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence            12234455556543    23799999987543211                           012233444444444444


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++++|++|||+..||...+..+.+++..
T Consensus       160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~  188 (275)
T 3gfo_A          160 MEPKVLILDEPTAGLDPMGVSEIMKLLVE  188 (275)
T ss_dssp             TCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            55555555555555555567777777653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.92  E-value=5.1e-26  Score=194.80  Aligned_cols=95  Identities=19%  Similarity=0.300  Sum_probs=76.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      +++|+++||++.|++..    +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|+++..    
T Consensus         5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~   77 (257)
T 1g6h_A            5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   77 (257)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            45799999999998754    8999999999999999999999999999999999999   99997 888875421    


Q ss_pred             HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060          150 AHARRGAPWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~~  176 (229)
                      ...+..+.+.+|..   ..+|+.||+.++.
T Consensus        78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~  107 (257)
T 1g6h_A           78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGE  107 (257)
T ss_dssp             HHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred             HHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence            12233444444443   3479999998864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.92  E-value=3.8e-26  Score=193.23  Aligned_cols=96  Identities=22%  Similarity=0.312  Sum_probs=74.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~  150 (229)
                      +|+++||++.|++......+|+++||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|.++.     ..
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~   77 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence            48999999999753222348999999999999999999999999999999999999   99997 88886431     11


Q ss_pred             --Hh--hcCC-CcccCcchhhhHHHHHHcc
Q 027060          151 --HA--RRGA-PWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus       151 --~~--~~~~-~~~~~~~~~~tv~e~l~~~  175 (229)
                        .+  .+++ ++.+..++.+|+.||+.++
T Consensus        78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~  107 (235)
T 3tif_A           78 TKIRRDKIGFVFQQFNLIPLLTALENVELP  107 (235)
T ss_dssp             HHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred             HHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence              11  2343 3333334457999999875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.92  E-value=9.1e-26  Score=202.73  Aligned_cols=146  Identities=14%  Similarity=0.212  Sum_probs=102.4

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HA  152 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~  152 (229)
                      |.+|+++||++.|++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++... ..
T Consensus         9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   81 (372)
T 1v43_A            9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   81 (372)
T ss_dssp             CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence            44699999999998754    8999999999999999999999999999999999999   99997 8888764321 12


Q ss_pred             hcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCcc
Q 027060          153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      ++.+++.||.+.   .+||.+|+.++.....                           ..++.++.+++..+.++..+++
T Consensus        82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~  161 (372)
T 1v43_A           82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD  161 (372)
T ss_dssp             GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred             hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            244556666543   4799999998754221                           1123444455555555555555


Q ss_pred             EEEecCCeeeecccCHHHHHHHHhh
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|++|||+..||...+.++++++..
T Consensus       162 lLLLDEP~s~LD~~~r~~l~~~l~~  186 (372)
T 1v43_A          162 VLLMDEPLSNLDAKLRVAMRAEIKK  186 (372)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHH
Confidence            5555555555555567777776643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.92  E-value=5.2e-26  Score=203.42  Aligned_cols=144  Identities=16%  Similarity=0.215  Sum_probs=99.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhh
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HAR  153 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~  153 (229)
                      .+|+++||+|.|++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++... ..+
T Consensus         2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~   74 (359)
T 2yyz_A            2 PSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKY   74 (359)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred             cEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChhh
Confidence            3699999999998754    8999999999999999999999999999999999999   99997 8888764321 122


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccccccCCC--------------CC-CCCCCchhhhhhccCCccE-----EEecCCe
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKV-----VIVDGNY  210 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~  210 (229)
                      +.+++.||.+   +.+|+.+|+.++.......              +. ....++....++.|+++|+     |+.+|++
T Consensus        75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l  154 (359)
T 2yyz_A           75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV  154 (359)
T ss_dssp             TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            3455555543   4489999999875432100              00 1122333444555554444     5555555


Q ss_pred             eeeccc-------CHHHHHHHHh
Q 027060          211 LFLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       211 LlLDEP-------~~~~l~~~l~  226 (229)
                      ++||||       .+.++++++.
T Consensus       155 LLLDEP~s~LD~~~r~~l~~~l~  177 (359)
T 2yyz_A          155 LLFDEPLSNLDANLRMIMRAEIK  177 (359)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             EEEECCcccCCHHHHHHHHHHHH
Confidence            555555       5666666654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.92  E-value=1.1e-25  Score=191.00  Aligned_cols=94  Identities=26%  Similarity=0.323  Sum_probs=75.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~  150 (229)
                      ++|+++||++.|++..    +|+++||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|.++..    .
T Consensus         5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   77 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence            4799999999998754    8999999999999999999999999999999999999   99997 888875421    1


Q ss_pred             HhhcCCCcccCc---chhhhHHHHHHccc
Q 027060          151 HARRGAPWTFNP---LLLLNCLKNLRNQG  176 (229)
Q Consensus       151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~  176 (229)
                      ..+.++.+.+|.   +..+|+.||+.++.
T Consensus        78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~  106 (240)
T 1ji0_A           78 INRMGIALVPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             HHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred             HHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence            223334444444   33479999998853

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.92  E-value=1.7e-25  Score=186.99  Aligned_cols=143  Identities=16%  Similarity=0.219  Sum_probs=98.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR  153 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~  153 (229)
                      ..+|+++||++.|++ .    +|+++||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|.++..  .+
T Consensus         8 ~~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~--~~   77 (214)
T 1sgw_A            8 GSKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITK--VK   77 (214)
T ss_dssp             -CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGG--GG
T ss_pred             CceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhh--hc
Confidence            347999999999976 4    8999999999999999999999999999999999999   99997 888877642  23


Q ss_pred             cCCCcccCc---chhhhHHHHHHccccccC-C-----------------------CCCCCCCCchhhhhhccCCccEEEe
Q 027060          154 RGAPWTFNP---LLLLNCLKNLRNQGSVYA-P-----------------------SFDHGVGDPVEDDILVGLQHKVVIV  206 (229)
Q Consensus       154 ~~~~~~~~~---~~~~tv~e~l~~~~~~~~-~-----------------------~~~~~~~~~~~~~l~~~~~~rvLi~  206 (229)
                      ..+.+.+|.   +..+|+.||+.++...+. .                       .++.++.+++..+.++..++++|++
T Consensus        78 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllL  157 (214)
T 1sgw_A           78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL  157 (214)
T ss_dssp             GGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            334444443   334799999987532110 0                       0112233333334444444555555


Q ss_pred             cCCeeeecccCHHHHHHHHhh
Q 027060          207 DGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       207 d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      |||+..||...+..+.+++..
T Consensus       158 DEPts~LD~~~~~~l~~~l~~  178 (214)
T 1sgw_A          158 DDPVVAIDEDSKHKVLKSILE  178 (214)
T ss_dssp             ESTTTTSCTTTHHHHHHHHHH
T ss_pred             ECCCcCCCHHHHHHHHHHHHH
Confidence            555555555567888777653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.91  E-value=9.6e-26  Score=201.92  Aligned_cols=144  Identities=17%  Similarity=0.259  Sum_probs=99.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhh
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HAR  153 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~  153 (229)
                      .+|+++||++.|++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++... ..+
T Consensus         2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~   74 (362)
T 2it1_A            2 VEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKD   74 (362)
T ss_dssp             CCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred             cEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHhH
Confidence            3699999999998754    8999999999999999999999999999999999999   99997 8888764321 122


Q ss_pred             cCCCcccCcc---hhhhHHHHHHccccccCCC--------------CC-CCCCCchhhhhhccCCccE-----EEecCCe
Q 027060          154 RGAPWTFNPL---LLLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKV-----VIVDGNY  210 (229)
Q Consensus       154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~  210 (229)
                      +.+++.||.+   +.+||.+|+.++.......              +. ....++....++.|+++|+     |+.+|++
T Consensus        75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l  154 (362)
T 2it1_A           75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV  154 (362)
T ss_dssp             TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            3455555543   4489999998864321100              00 1122333444555554444     5555555


Q ss_pred             eeeccc-------CHHHHHHHHh
Q 027060          211 LFLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       211 LlLDEP-------~~~~l~~~l~  226 (229)
                      ++||||       .+.++++++.
T Consensus       155 LLLDEP~s~LD~~~r~~l~~~l~  177 (362)
T 2it1_A          155 LLLDEPLSNLDALLRLEVRAELK  177 (362)
T ss_dssp             EEEESGGGGSCHHHHHHHHHHHH
T ss_pred             EEEECccccCCHHHHHHHHHHHH
Confidence            555555       5666666654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.91  E-value=5.6e-26  Score=204.18  Aligned_cols=94  Identities=15%  Similarity=0.188  Sum_probs=77.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      .+|+++||++.|++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++..     
T Consensus         2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~~   74 (372)
T 1g29_1            2 AGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGI   74 (372)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGTE
T ss_pred             CEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECccccccc
Confidence            4699999999998754    8999999999999999999999999999999999999   99997 888876422     


Q ss_pred             --HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060          150 --AHARRGAPWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       150 --~~~~~~~~~~~~~~---~~~tv~e~l~~~~  176 (229)
                        ...++.+++.||.+   +.+|+.+|+.++.
T Consensus        75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~  106 (372)
T 1g29_1           75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL  106 (372)
T ss_dssp             ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred             cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence              11234455555554   4489999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.91  E-value=9.2e-26  Score=201.50  Aligned_cols=146  Identities=14%  Similarity=0.243  Sum_probs=100.8

Q ss_pred             CCCeEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-
Q 027060           74 EIPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-  150 (229)
Q Consensus        74 ~~~~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-  150 (229)
                      +..+|+++||++.| ++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++... 
T Consensus        11 ~~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~   83 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLP   83 (355)
T ss_dssp             CCEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCC
T ss_pred             CCceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCC
Confidence            55689999999999 7654    8999999999999999999999999999999999999   99997 8888764321 


Q ss_pred             HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060          151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~  200 (229)
                      ..++.+++.||.+   +.+||.||+.++.....                           ..++.++.+++..+.++..+
T Consensus        84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~  163 (355)
T 1z47_A           84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR  163 (355)
T ss_dssp             GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence            1233455555543   44899999988643211                           01122333444444444444


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      +++|++|||+..||...+.++++++.
T Consensus       164 P~lLLLDEP~s~LD~~~r~~l~~~l~  189 (355)
T 1z47_A          164 PQVLLFDEPFAAIDTQIRRELRTFVR  189 (355)
T ss_dssp             CSEEEEESTTCCSSHHHHHHHHHHHH
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            44455555555555545777776654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.91  E-value=1.6e-25  Score=192.32  Aligned_cols=92  Identities=15%  Similarity=0.199  Sum_probs=73.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-------  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-------  148 (229)
                      +|+++||++.|++..    +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|+++.       
T Consensus         6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   78 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG   78 (262)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred             eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence            699999999998754    8999999999999999999999999999999999999   99997 88886542       


Q ss_pred             -----------HHHhhcCC-CcccCcchhhhHHHHHHcc
Q 027060          149 -----------EAHARRGA-PWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus       149 -----------~~~~~~~~-~~~~~~~~~~tv~e~l~~~  175 (229)
                                 ..+..+++ ++.+..+..+|+.+|+.++
T Consensus        79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  117 (262)
T 1b0u_A           79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA  117 (262)
T ss_dssp             SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred             cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhh
Confidence                       11223343 3333333447999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.91  E-value=2.9e-25  Score=191.61  Aligned_cols=96  Identities=19%  Similarity=0.165  Sum_probs=74.4

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      .+|+++||++.|++.. ...+|+++||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|.++..     
T Consensus        15 ~~l~~~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   90 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHY   90 (271)
T ss_dssp             CCEEEEEEEECCTTCT-TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHH
T ss_pred             ceEEEEEEEEEeCCCC-CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHH
Confidence            4699999999997510 1127999999999999999999999999999999999999   99997 888876532     


Q ss_pred             HHhhcCC-CcccCcchhhhHHHHHHccc
Q 027060          150 AHARRGA-PWTFNPLLLLNCLKNLRNQG  176 (229)
Q Consensus       150 ~~~~~~~-~~~~~~~~~~tv~e~l~~~~  176 (229)
                      .+..+++ ++.+..+. .|+.||+.++.
T Consensus        91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~  117 (271)
T 2ixe_A           91 LHTQVAAVGQEPLLFG-RSFRENIAYGL  117 (271)
T ss_dssp             HHHHEEEECSSCCCCS-SBHHHHHHTTC
T ss_pred             HhccEEEEecCCcccc-ccHHHHHhhhc
Confidence            2233443 33333333 59999998853

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.91  E-value=2.9e-25  Score=191.07  Aligned_cols=147  Identities=18%  Similarity=0.230  Sum_probs=98.1

Q ss_pred             eEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      +|+++||++.|+ +......+|+++||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|.++.....+.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~   78 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR   78 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence            589999999997 21000127999999999999999999999999999999999999   99997 88887653222223


Q ss_pred             CCCcccCcc----hhhhHHHHHHccccccCCC-------------CC-C--CCCCchhhhhhccCCccE-----EEecCC
Q 027060          155 GAPWTFNPL----LLLNCLKNLRNQGSVYAPS-------------FD-H--GVGDPVEDDILVGLQHKV-----VIVDGN  209 (229)
Q Consensus       155 ~~~~~~~~~----~~~tv~e~l~~~~~~~~~~-------------~~-~--~~~~~~~~~l~~~~~~rv-----Li~d~~  209 (229)
                      .+.+.+|.+    ..+|+.+|+.++.....+.             +. .  ...++....++.|+++|+     |+.+|+
T Consensus        79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  158 (266)
T 2yz2_A           79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD  158 (266)
T ss_dssp             GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            344555542    2379999998864321000             00 0  112233345555555554     566666


Q ss_pred             eeeeccc-------CHHHHHHHHh
Q 027060          210 YLFLDGG-------VWKDVSSMFD  226 (229)
Q Consensus       210 ~LlLDEP-------~~~~l~~~l~  226 (229)
                      +++||||       .+..+.+++.
T Consensus       159 lllLDEPts~LD~~~~~~l~~~l~  182 (266)
T 2yz2_A          159 ILILDEPLVGLDREGKTDLLRIVE  182 (266)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             EEEEcCccccCCHHHHHHHHHHHH
Confidence            6666666       4666666654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.91  E-value=1.8e-25  Score=199.67  Aligned_cols=147  Identities=15%  Similarity=0.201  Sum_probs=102.5

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----  149 (229)
                      .+|+++||++.|++.  ...+|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++..     
T Consensus         2 ~~l~i~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~   76 (353)
T 1oxx_K            2 VRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLI   76 (353)
T ss_dssp             CCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEES
T ss_pred             cEEEEEeEEEEECCE--eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECccccccc
Confidence            469999999999753  1116899999999999999999999999999999999999   99997 888876422     


Q ss_pred             -HHhhcCCCcccCcc---hhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhcc
Q 027060          150 -AHARRGAPWTFNPL---LLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVG  198 (229)
Q Consensus       150 -~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~  198 (229)
                       ...++.+++.||.+   +.+|+.+|+.++......                           .++.++.+++..+.++.
T Consensus        77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~  156 (353)
T 1oxx_K           77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV  156 (353)
T ss_dssp             SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred             CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence             11234455555554   448999999987543210                           11223344444444455


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++++|++|||+..||...+.++++++..
T Consensus       157 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  185 (353)
T 1oxx_K          157 KDPSLLLLDEPFSNLDARMRDSARALVKE  185 (353)
T ss_dssp             TCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred             hCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            55555555555555555567777777653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.91  E-value=3.9e-25  Score=191.58  Aligned_cols=94  Identities=13%  Similarity=0.092  Sum_probs=75.9

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~  149 (229)
                      ++|+++||++.|++..    +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|.++.     .
T Consensus        20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~   92 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA   92 (279)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred             ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence            4799999999998754    8999999999999999999999999999999999999   99997 88887643     1


Q ss_pred             HHhhcCCCcccCcch-----hhhHHHHHHccc
Q 027060          150 AHARRGAPWTFNPLL-----LLNCLKNLRNQG  176 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~-----~~tv~e~l~~~~  176 (229)
                      ...+..+.+.+|...     .+|+.||+.++.
T Consensus        93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~  124 (279)
T 2ihy_A           93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGA  124 (279)
T ss_dssp             HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred             HHHcCcEEEEEcCcccccCCCCCHHHHHHhhh
Confidence            122334555555432     259999998753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.91  E-value=8.5e-25  Score=186.27  Aligned_cols=143  Identities=16%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             eEEEeeeeEEcC--ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060           77 VVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----  148 (229)
Q Consensus        77 ~i~~~~ls~~y~--~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----  148 (229)
                      -|+++||++.|+  +..    +|+++||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|.++.     
T Consensus         7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~   79 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN   79 (247)
T ss_dssp             EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred             ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence            489999999993  333    7999999999999999999999999999999999999   99997 88887542     


Q ss_pred             HHHhhcCC-CcccCcchhhhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhh
Q 027060          149 EAHARRGA-PWTFNPLLLLNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDI  195 (229)
Q Consensus       149 ~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l  195 (229)
                      ..+..+++ ++.+..+. .|+.+|+.++....                                ...++.++.+++..+.
T Consensus        80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr  158 (247)
T 2ff7_A           80 WLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR  158 (247)
T ss_dssp             HHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred             HHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence            22333443 33333333 59999998753110                                0123445556666666


Q ss_pred             hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++..++++|++|||+..||...+..+.+++..
T Consensus       159 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~  190 (247)
T 2ff7_A          159 ALVNNPKILIFDEATSALDYESEHVIMRNMHK  190 (247)
T ss_dssp             HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            66667777777777777777778888887754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.91  E-value=2.7e-25  Score=188.71  Aligned_cols=144  Identities=19%  Similarity=0.185  Sum_probs=100.8

Q ss_pred             eEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---H
Q 027060           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---H  151 (229)
Q Consensus        77 ~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---~  151 (229)
                      +|+++||++.| ++..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|. .++|.++...   .
T Consensus         1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   73 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN   73 (243)
T ss_dssp             CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred             CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence            48999999999 4433    8999999999999999999999999999999999999   99997 8888754321   1


Q ss_pred             hhcCCCcccCcchh--hhHHHHHHccccccC---------------------------------CCCCCCCCCchhhhhh
Q 027060          152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------------------------PSFDHGVGDPVEDDIL  196 (229)
Q Consensus       152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~  196 (229)
                      .+..+.+.+|.+.+  .|+.+|+.++.....                                 ..++.++.+++..+.+
T Consensus        74 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra  153 (243)
T 1mv5_A           74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA  153 (243)
T ss_dssp             CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred             HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence            12234444444322  599999987521000                                 0122334455555555


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..++++|++|||+..||...+..+.+++..
T Consensus       154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~  184 (243)
T 1mv5_A          154 FLRNPKILMLDEATASLDSESESMVQKALDS  184 (243)
T ss_dssp             HHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             HhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            5556666666777777776677777777653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.90  E-value=9.8e-25  Score=186.09  Aligned_cols=93  Identities=23%  Similarity=0.225  Sum_probs=73.0

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCCCCce-EecCCCHH----
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQDPK----  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~g~~~~----  148 (229)
                      ++|+++||++.|++..    +|+++||+|++||+++|+||||||||||+|+|+|+  ++   |++|. .++|.++.    
T Consensus         2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~~   74 (250)
T 2d2e_A            2 SQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELSP   74 (250)
T ss_dssp             CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSCH
T ss_pred             ceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCCH
Confidence            4799999999998754    89999999999999999999999999999999998  78   89997 88887542    


Q ss_pred             HHHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060          149 EAHARRGAPWTFNPL---LLLNCLKNLRNQ  175 (229)
Q Consensus       149 ~~~~~~~~~~~~~~~---~~~tv~e~l~~~  175 (229)
                      ....+.++.+.+|.+   ..+|+.+|+.++
T Consensus        75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  104 (250)
T 2d2e_A           75 DERARKGLFLAFQYPVEVPGVTIANFLRLA  104 (250)
T ss_dssp             HHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred             HHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence            112233444444433   337888888653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.90  E-value=1.3e-24  Score=193.61  Aligned_cols=142  Identities=17%  Similarity=0.263  Sum_probs=96.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~~~  154 (229)
                      ||+++||++.|++.     +|+++||+|++||+++|+||||||||||||+|+|+++   |++|. .++|+++.. ...++
T Consensus         1 ml~~~~l~~~y~~~-----~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r   72 (348)
T 3d31_A            1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (348)
T ss_dssp             CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEECCE-----EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence            48999999999752     6899999999999999999999999999999999999   99997 888876421 11123


Q ss_pred             CCCcccCcc---hhhhHHHHHHccccccCCC-----------CC-CCCCCchhhhhhccCCccE-----EEecCCeeeec
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQGSVYAPS-----------FD-HGVGDPVEDDILVGLQHKV-----VIVDGNYLFLD  214 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~~~-----------~~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlLD  214 (229)
                      .+++.||.+   +.+|+.||+.++.......           +. ....++....++.|+++|+     |+.+|++++||
T Consensus        73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD  152 (348)
T 3d31_A           73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD  152 (348)
T ss_dssp             TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            455555543   4489999998864321100           00 1122333444444444444     55555555555


Q ss_pred             cc-------CHHHHHHHHh
Q 027060          215 GG-------VWKDVSSMFD  226 (229)
Q Consensus       215 EP-------~~~~l~~~l~  226 (229)
                      ||       .+.++++++.
T Consensus       153 EP~s~LD~~~~~~l~~~l~  171 (348)
T 3d31_A          153 EPLSALDPRTQENAREMLS  171 (348)
T ss_dssp             SSSTTSCHHHHHHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHH
Confidence            55       5666666654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.90  E-value=1.2e-24  Score=184.62  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=72.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~  154 (229)
                      +|+++||++.|++      +|+++||+|++ |+++|+||||||||||+|+|+|+++   |++|. .++|+++... ..+.
T Consensus         1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   70 (240)
T 2onk_A            1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR   70 (240)
T ss_dssp             CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred             CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence            3789999999974      48999999999 9999999999999999999999999   99997 8888764321 1123


Q ss_pred             CCCcccCcc---hhhhHHHHHHccc
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~~  176 (229)
                      .+++.+|..   ..+|+.||+.++.
T Consensus        71 ~i~~v~q~~~l~~~ltv~enl~~~~   95 (240)
T 2onk_A           71 GIGFVPQDYALFPHLSVYRNIAYGL   95 (240)
T ss_dssp             CCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred             cEEEEcCCCccCCCCcHHHHHHHHH
Confidence            445555543   3479999998864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.90  E-value=1.4e-24  Score=183.85  Aligned_cols=85  Identities=12%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             CeEEEeeeeEEcCc--cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060           76 PVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA  152 (229)
Q Consensus        76 ~~i~~~~ls~~y~~--~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~  152 (229)
                      .+|+++||++.|++  ..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|. .++|.       
T Consensus         2 ~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~-------   67 (237)
T 2cbz_A            2 NSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS-------   67 (237)
T ss_dssp             CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECSC-------
T ss_pred             CeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCE-------
Confidence            46999999999973  33    7999999999999999999999999999999999999   99997 77772       


Q ss_pred             hcCC-CcccCcchhhhHHHHHHccc
Q 027060          153 RRGA-PWTFNPLLLLNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~-~~~~~~~~~~tv~e~l~~~~  176 (229)
                       +++ ++.+. ....|+.+|+.++.
T Consensus        68 -i~~v~Q~~~-~~~~tv~enl~~~~   90 (237)
T 2cbz_A           68 -VAYVPQQAW-IQNDSLRENILFGC   90 (237)
T ss_dssp             -EEEECSSCC-CCSEEHHHHHHTTS
T ss_pred             -EEEEcCCCc-CCCcCHHHHhhCcc
Confidence             332 22221 22378999998753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.90  E-value=1.5e-24  Score=190.19  Aligned_cols=145  Identities=17%  Similarity=0.133  Sum_probs=102.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++..   .+|+||||+|++|+++||+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus        53 ~i~~~~vs~~y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~~  126 (306)
T 3nh6_A           53 RIEFENVHFSYADGR---ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQASL  126 (306)
T ss_dssp             CEEEEEEEEESSTTC---EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHHH
T ss_pred             eEEEEEEEEEcCCCC---ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHHH
Confidence            599999999996421   27999999999999999999999999999999999999   99997 889976421   122


Q ss_pred             hcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060          153 RRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       153 ~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~  198 (229)
                      +..+.+++|.+.  ..|+.+|+.++.....                                ..++.++.+++..+.++.
T Consensus       127 r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~  206 (306)
T 3nh6_A          127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL  206 (306)
T ss_dssp             HHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             hcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence            333444444433  2699999998643210                                112334445555555555


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++++|++|+++..||......+.+.+..
T Consensus       207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~  235 (306)
T 3nh6_A          207 KAPGIILLDEATSALDTSNERAIQASLAK  235 (306)
T ss_dssp             HCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             hCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            56666666666666666667777777654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.90  E-value=3.2e-24  Score=183.40  Aligned_cols=85  Identities=15%  Similarity=0.102  Sum_probs=68.4

Q ss_pred             CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhc
Q 027060           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARR  154 (229)
Q Consensus        76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~  154 (229)
                      ++|+++||++.|+ +..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|....         +.
T Consensus         3 ~~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~---------~~   66 (253)
T 2nq2_C            3 KALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV---------YQ   66 (253)
T ss_dssp             EEEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE---------CS
T ss_pred             ceEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE---------ec
Confidence            4799999999998 544    8999999999999999999999999999999999999   99997431         12


Q ss_pred             CCCcccCc---chhhhHHHHHHccc
Q 027060          155 GAPWTFNP---LLLLNCLKNLRNQG  176 (229)
Q Consensus       155 ~~~~~~~~---~~~~tv~e~l~~~~  176 (229)
                      .+.+.+|.   +..+|+.||+.++.
T Consensus        67 ~i~~v~q~~~~~~~~tv~enl~~~~   91 (253)
T 2nq2_C           67 SIGFVPQFFSSPFAYSVLDIVLMGR   91 (253)
T ss_dssp             CEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred             cEEEEcCCCccCCCCCHHHHHHHhh
Confidence            23333333   23468999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.89  E-value=3.6e-24  Score=180.36  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=91.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      .+|+++||++.|++..  ..+|+++||+|++|++++|+||||||||||+|+|+|+++   |++|. .++|.        +
T Consensus         5 ~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~--------i   71 (229)
T 2pze_A            5 TEVVMENVTAFWEEGG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR--------I   71 (229)
T ss_dssp             EEEEEEEEEECSSTTS--CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECSC--------E
T ss_pred             ceEEEEEEEEEeCCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECCE--------E
Confidence            4799999999996311  127999999999999999999999999999999999999   99997 77772        3


Q ss_pred             CC-CcccCcchhhhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccCCcc
Q 027060          155 GA-PWTFNPLLLLNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       155 ~~-~~~~~~~~~~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      ++ ++.+..+. .|+.||+.++....                               ...++.++.+++..+.++..+++
T Consensus        72 ~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~  150 (229)
T 2pze_A           72 SFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD  150 (229)
T ss_dssp             EEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred             EEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            32 33332333 48888888753210                               01122333344444444444555


Q ss_pred             EEEecCCeeeecccCHHHHHHH
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSM  224 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~  224 (229)
                      ++++|||+..||...+..+.+.
T Consensus       151 lllLDEPts~LD~~~~~~i~~~  172 (229)
T 2pze_A          151 LYLLDSPFGYLDVLTEKEIFES  172 (229)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHH
T ss_pred             EEEEECcccCCCHHHHHHHHHH
Confidence            5555555555555567777764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.89  E-value=6.9e-24  Score=181.90  Aligned_cols=147  Identities=14%  Similarity=0.052  Sum_probs=96.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH  151 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~  151 (229)
                      .+|+++||++.|++.. ...+|+++||+|++|++++|+||||||||||+|+|+|+++   | +|. .++|.++..   ..
T Consensus        16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~   90 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS   90 (260)
T ss_dssp             CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred             CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence            3699999999997631 1237999999999999999999999999999999999998   7 797 888876532   11


Q ss_pred             hhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhc
Q 027060          152 ARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       152 ~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      .+..+.+.+|.+.  ..|+.+|+.++.....                                ..++.++.+++..+.++
T Consensus        91 ~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL  170 (260)
T 2ghi_A           91 IRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL  170 (260)
T ss_dssp             HHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred             HhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence            2233444444332  2599999987531000                                01222333444444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++|+|+..||...+..+.+++..
T Consensus       171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~  200 (260)
T 2ghi_A          171 LKDPKIVIFDEATSSLDSKTEYLFQKAVED  200 (260)
T ss_dssp             HHCCSEEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            444555555555555555567777776653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.89  E-value=5.5e-24  Score=183.20  Aligned_cols=93  Identities=20%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCCCCce-EecCCCHHH--
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQDPKE--  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~g~~~~~--  149 (229)
                      +++|+++||++.|++..    +|+++||+|++||+++|+||||||||||+|+|+|+  ++   |++|. .++|.++..  
T Consensus        18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~   90 (267)
T 2zu0_C           18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS   90 (267)
T ss_dssp             --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred             CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence            34799999999997654    89999999999999999999999999999999998  46   88997 888876421  


Q ss_pred             --HHhhcCCCcccCcc---hhhhHHHHHHc
Q 027060          150 --AHARRGAPWTFNPL---LLLNCLKNLRN  174 (229)
Q Consensus       150 --~~~~~~~~~~~~~~---~~~tv~e~l~~  174 (229)
                        ...+.++.+.+|.+   ..+++.+|+.+
T Consensus        91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~  120 (267)
T 2zu0_C           91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQT  120 (267)
T ss_dssp             HHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred             HHHHhhCCEEEEccCccccccccHHHHHHH
Confidence              12233343444433   33566666654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.88  E-value=2.5e-23  Score=177.45  Aligned_cols=89  Identities=25%  Similarity=0.284  Sum_probs=70.6

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~  149 (229)
                      .+|+++||++.    .    +|+++||+|++||+++|+||||||||||+|+|+|+++   |+ |. .++|.++.     .
T Consensus         3 ~~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~   70 (249)
T 2qi9_C            3 IVMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATK   70 (249)
T ss_dssp             EEEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHH
T ss_pred             cEEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHH
Confidence            37999999986    2    7999999999999999999999999999999999999   99 97 88887642     2


Q ss_pred             HHhhcCC-CcccCcchhhhHHHHHHccc
Q 027060          150 AHARRGA-PWTFNPLLLLNCLKNLRNQG  176 (229)
Q Consensus       150 ~~~~~~~-~~~~~~~~~~tv~e~l~~~~  176 (229)
                      .+..+++ ++.+..+..+|+.||+.++.
T Consensus        71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~   98 (249)
T 2qi9_C           71 LALHRAYLSQQQTPPFATPVWHYLTLHQ   98 (249)
T ss_dssp             HHHHEEEECSCCCCCTTCBHHHHHHTTC
T ss_pred             HhceEEEECCCCccCCCCcHHHHHHHhh
Confidence            2233443 33333334479999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.87  E-value=4.8e-23  Score=186.08  Aligned_cols=144  Identities=19%  Similarity=0.219  Sum_probs=96.2

Q ss_pred             CeEEEeeeeEEcC--ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---
Q 027060           76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---  149 (229)
Q Consensus        76 ~~i~~~~ls~~y~--~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---  149 (229)
                      ..|+++||+|.|+  +..    +|+++||+|++||+++|+||||||||||||+|+|+++    ++|. .++|+++..   
T Consensus        18 ~~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~   89 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITL   89 (390)
T ss_dssp             CCEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCH
T ss_pred             CeEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCCh
Confidence            4699999999994  333    8999999999999999999999999999999999875    5786 899986432   


Q ss_pred             HHhhcCCCcccCcchh--hhHHHHHHcccccc-------------------CC-C-----------CCCCCCCchhhhhh
Q 027060          150 AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------------AP-S-----------FDHGVGDPVEDDIL  196 (229)
Q Consensus       150 ~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------------~~-~-----------~~~~~~~~~~~~l~  196 (229)
                      ...+..+.+.||.+.+  +|+.+|+.+.....                   .+ .           ++.++.+++..+.+
T Consensus        90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA  169 (390)
T 3gd7_A           90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS  169 (390)
T ss_dssp             HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence            1223345555555432  69999997432110                   00 1           23344444444444


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..++++|++|||+..||...+.++++.+..
T Consensus       170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~  200 (390)
T 3gd7_A          170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ  200 (390)
T ss_dssp             HHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred             HhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            4444555555555555555457777776653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.86  E-value=8e-22  Score=186.27  Aligned_cols=95  Identities=21%  Similarity=0.254  Sum_probs=75.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++..  ..+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       341 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~  415 (582)
T 3b5x_A          341 EVDVKDVTFTYQGKE--KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTNL  415 (582)
T ss_pred             eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHHH
Confidence            699999999997521  127999999999999999999999999999999999999   99997 899987532   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.+  .|+.||+.++.
T Consensus       416 ~~~i~~v~Q~~~l~~~tv~eni~~~~  441 (582)
T 3b5x_A          416 RRHFALVSQNVHLFNDTIANNIAYAA  441 (582)
T ss_pred             hcCeEEEcCCCccccccHHHHHhccC
Confidence            3344445554332  69999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.85  E-value=2.3e-22  Score=172.86  Aligned_cols=90  Identities=12%  Similarity=0.104  Sum_probs=69.2

Q ss_pred             eEEEeeeeEEcCc----cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHH
Q 027060           77 VVEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAH  151 (229)
Q Consensus        77 ~i~~~~ls~~y~~----~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~  151 (229)
                      +|+++|+++.|++    ..    +|+++||+|+ |++++|+||||||||||+|+|+|++    |++|. .++|.++....
T Consensus         1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~   71 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIR   71 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCS
T ss_pred             CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchH
Confidence            4899999999976    33    8999999999 9999999999999999999999976    58897 88887653211


Q ss_pred             hhcCCC-cccCcch-hhhHHHHHHcc
Q 027060          152 ARRGAP-WTFNPLL-LLNCLKNLRNQ  175 (229)
Q Consensus       152 ~~~~~~-~~~~~~~-~~tv~e~l~~~  175 (229)
                      .+..+. +.+|.+. .+|+.||+.++
T Consensus        72 ~~~~i~~~v~Q~~~l~~tv~enl~~~   97 (263)
T 2pjz_A           72 NYIRYSTNLPEAYEIGVTVNDIVYLY   97 (263)
T ss_dssp             CCTTEEECCGGGSCTTSBHHHHHHHH
T ss_pred             HhhheEEEeCCCCccCCcHHHHHHHh
Confidence            122233 4444322 57899999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.84  E-value=6.9e-22  Score=186.67  Aligned_cols=95  Identities=20%  Similarity=0.230  Sum_probs=73.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++..  ..+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       341 ~i~~~~v~~~y~~~~--~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~  415 (582)
T 3b60_A          341 DLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL  415 (582)
T ss_dssp             CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred             cEEEEEEEEEcCCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHHH
Confidence            599999999997421  128999999999999999999999999999999999999   99997 889976421   112


Q ss_pred             hcCCCcccCcch--hhhHHHHHHccc
Q 027060          153 RRGAPWTFNPLL--LLNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~--~~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.  ..|+.||+.++.
T Consensus       416 ~~~i~~v~Q~~~l~~~tv~eni~~~~  441 (582)
T 3b60_A          416 RNQVALVSQNVHLFNDTVANNIAYAR  441 (582)
T ss_dssp             HHTEEEECSSCCCCSSBHHHHHHTTT
T ss_pred             HhhCeEEccCCcCCCCCHHHHHhccC
Confidence            223334444332  259999999864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.84  E-value=7.6e-22  Score=186.32  Aligned_cols=95  Identities=16%  Similarity=0.149  Sum_probs=74.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||+++|++..  ..+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus       339 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~  413 (578)
T 4a82_A          339 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL  413 (578)
T ss_dssp             CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence            599999999997532  127999999999999999999999999999999999999   99997 899986532   122


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|.+.+  .|+.||+.++.
T Consensus       414 r~~i~~v~Q~~~l~~~tv~eni~~~~  439 (578)
T 4a82_A          414 RNQIGLVQQDNILFSDTVKENILLGR  439 (578)
T ss_dssp             HHTEEEECSSCCCCSSBHHHHHGGGC
T ss_pred             hhheEEEeCCCccCcccHHHHHhcCC
Confidence            2334444444322  59999998864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.84  E-value=1e-21  Score=186.06  Aligned_cols=144  Identities=16%  Similarity=0.151  Sum_probs=98.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      .|+++||++.|++..   .+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..     .
T Consensus       354 ~i~~~~v~~~y~~~~---~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~  427 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKK---PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL  427 (598)
T ss_dssp             CEEEEEEECCSSSSS---CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEECCCCC---ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence            499999999997532   27999999999999999999999999999999999999   99997 899986532     2


Q ss_pred             HhhcCC-CcccCcchhhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhc
Q 027060          151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      +..+++ ++.+..+ ..|+.||+.++.....                                ..++.++.+++..++++
T Consensus       428 r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral  506 (598)
T 3qf4_B          428 RSSIGIVLQDTILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF  506 (598)
T ss_dssp             HHHEEEECTTCCCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HhceEEEeCCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence            334443 3333322 2699999998642110                                01223334444444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++||++..||..+.+.+.+.+..
T Consensus       507 ~~~p~illlDEpts~LD~~~~~~i~~~l~~  536 (598)
T 3qf4_B          507 LANPKILILDEATSNVDTKTEKSIQAAMWK  536 (598)
T ss_dssp             HTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            445555555555555555567777766653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.83  E-value=1.2e-21  Score=185.25  Aligned_cols=145  Identities=20%  Similarity=0.162  Sum_probs=99.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      .|+++||++.|++...  .+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|. .++|.++..     .
T Consensus       341 ~i~~~~v~~~y~~~~~--~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~  415 (587)
T 3qf4_A          341 SVSFENVEFRYFENTD--PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL  415 (587)
T ss_dssp             CEEEEEEEECSSSSSC--CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred             cEEEEEEEEEcCCCCC--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence            5999999999964321  27999999999999999999999999999999999999   99997 899987532     2


Q ss_pred             HhhcCC-CcccCcchhhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhc
Q 027060          151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      +.++++ ++.+..+. .|+.||+.++.....                                ..++.++.+|+..++++
T Consensus       416 r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal  494 (587)
T 3qf4_A          416 RGHISAVPQETVLFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL  494 (587)
T ss_dssp             HHHEEEECSSCCCCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH
T ss_pred             HhheEEECCCCcCcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH
Confidence            334443 33333322 599999987642110                                01223334444444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..+++++++||++..||..+.+++.+.+..
T Consensus       495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~  524 (587)
T 3qf4_A          495 VKKPKVLILDDCTSSVDPITEKRILDGLKR  524 (587)
T ss_dssp             HTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            455555555555555555567777776653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.82  E-value=1.2e-21  Score=170.56  Aligned_cols=130  Identities=12%  Similarity=0.107  Sum_probs=78.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR  154 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~  154 (229)
                      ++|+++||++.+  ..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|. .++|.        +
T Consensus        39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~--------i  101 (290)
T 2bbs_A           39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR--------I  101 (290)
T ss_dssp             -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCSC--------E
T ss_pred             ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCE--------E
Confidence            369999999864  22    7999999999999999999999999999999999999   99997 77662        2


Q ss_pred             CC-CcccCcchhhhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccCCcc
Q 027060          155 GA-PWTFNPLLLLNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       155 ~~-~~~~~~~~~~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      ++ ++.+..+. .|+.+|+. +....                               ...++.++.+++..+.++..+++
T Consensus       102 ~~v~Q~~~l~~-~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~  179 (290)
T 2bbs_A          102 SFCSQNSWIMP-GTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD  179 (290)
T ss_dssp             EEECSSCCCCS-SBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred             EEEeCCCccCc-ccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence            32 22222222 48888876 32100                               01233344444444555555555


Q ss_pred             EEEecCCeeeecccCHHHHHHH
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSM  224 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~  224 (229)
                      +|++|+|+..||...+..+.++
T Consensus       180 lllLDEPts~LD~~~~~~i~~~  201 (290)
T 2bbs_A          180 LYLLDSPFGYLDVLTEKEIFES  201 (290)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHH
T ss_pred             EEEEECCcccCCHHHHHHHHHH
Confidence            5555555555555567777764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.78  E-value=5.2e-20  Score=187.72  Aligned_cols=147  Identities=19%  Similarity=0.166  Sum_probs=103.5

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      -|+++||+++|+++. ...+|+|+||+|++||.+||+|+||||||||+++|.|++.   |++|. .++|.++..   ...
T Consensus      1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp             CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred             eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence            499999999997642 2338999999999999999999999999999999999999   99997 999986432   223


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccC----------------------------------CCCCCCCCCchhhhhh
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------------------------PSFDHGVGDPVEDDIL  196 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------------------------~~~~~~~~~~~~~~l~  196 (229)
                      |..+..++|.+.+  -|+++||.++.....                                  ..++.|+.|++..+++
T Consensus      1152 R~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A         1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp             HTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred             HhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence            3344455555543  689999987632100                                  0122334455555555


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..+++||++||++--||..+.+.+.+.++.
T Consensus      1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1232 LVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             HHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred             HHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            5555556666666666665567777777654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.77  E-value=1.4e-19  Score=184.08  Aligned_cols=96  Identities=20%  Similarity=0.202  Sum_probs=77.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      .|+++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|.|+++   |++|. .++|.++..   ...
T Consensus      1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp             CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred             cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence            599999999997642 2237999999999999999999999999999999999999   99997 899987532   223


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQG  176 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~  176 (229)
                      +..+.+.+|++.+  .|+.||+.++.
T Consensus      1106 r~~i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A         1106 RAQLGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp             TTSCEEEESSCCCCSSBHHHHHTCCC
T ss_pred             HhceEEECCCCccccccHHHHHhccC
Confidence            4456666665533  79999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.77  E-value=1.1e-19  Score=184.90  Aligned_cols=95  Identities=22%  Similarity=0.211  Sum_probs=75.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~  150 (229)
                      .|+++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|.|+++   |++|. .++|.++.     ..
T Consensus       387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~  462 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL  462 (1284)
T ss_dssp             CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence            499999999997532 2238999999999999999999999999999999999999   99997 89998643     23


Q ss_pred             HhhcCC-CcccCcchhhhHHHHHHccc
Q 027060          151 HARRGA-PWTFNPLLLLNCLKNLRNQG  176 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~  176 (229)
                      +..+++ ++.+..+. .|+.||+.++.
T Consensus       463 r~~i~~v~Q~~~l~~-~ti~eNi~~g~  488 (1284)
T 3g5u_A          463 REIIGVVSQEPVLFA-TTIAENIRYGR  488 (1284)
T ss_dssp             HHHEEEECSSCCCCS-SCHHHHHHHHC
T ss_pred             HhheEEEcCCCccCC-ccHHHHHhcCC
Confidence            334443 33333222 59999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.75  E-value=1.1e-18  Score=177.89  Aligned_cols=145  Identities=16%  Similarity=0.131  Sum_probs=106.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~  150 (229)
                      -|+++||+++|++.. ...+|+|+||+|++|+.++|+||+|||||||+++|.|++.   |++|. .++|.++.     ..
T Consensus       415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l  490 (1321)
T 4f4c_A          415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL  490 (1321)
T ss_dssp             CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred             cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence            499999999997642 2348999999999999999999999999999999999999   99997 89997643     33


Q ss_pred             HhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhh
Q 027060          151 HARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDIL  196 (229)
Q Consensus       151 ~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~  196 (229)
                      +..++  +++|.+.  .-|++||+.++.....                                ...+.|+++|+..+++
T Consensus       491 r~~i~--~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA  568 (1321)
T 4f4c_A          491 RKNVA--VVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA  568 (1321)
T ss_dssp             HHHEE--EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred             hhccc--ccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence            44444  4444443  3799999998743110                                1122345566666666


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..+++++++|+++--||..+.+.+.+.++.
T Consensus       569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~  599 (1321)
T 4f4c_A          569 LVRNPKILLLDEATSALDAESEGIVQQALDK  599 (1321)
T ss_dssp             HTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred             HccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            6666666777777777776677777776653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.74  E-value=8.2e-19  Score=164.38  Aligned_cols=87  Identities=20%  Similarity=0.179  Sum_probs=65.8

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA  152 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~  152 (229)
                      ..++++++++++.|++.     .|+.+||+|++||++||+||||||||||+|+|+|+++   |++|. .+++..+..   
T Consensus       266 ~~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~~i~~---  334 (538)
T 3ozx_A          266 LKTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQILSY---  334 (538)
T ss_dssp             CCEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCCCEEE---
T ss_pred             ccceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCeeeEe---
Confidence            34579999999999874     4778899999999999999999999999999999999   99997 555543210   


Q ss_pred             hcCCCcccCcchhhhHHHHHHc
Q 027060          153 RRGAPWTFNPLLLLNCLKNLRN  174 (229)
Q Consensus       153 ~~~~~~~~~~~~~~tv~e~l~~  174 (229)
                         +++........++.+|+.+
T Consensus       335 ---~~q~~~~~~~~tv~~~l~~  353 (538)
T 3ozx_A          335 ---KPQRIFPNYDGTVQQYLEN  353 (538)
T ss_dssp             ---ECSSCCCCCSSBHHHHHHH
T ss_pred             ---echhcccccCCCHHHHHHH
Confidence               1111111123677787765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.73  E-value=1.3e-18  Score=165.10  Aligned_cols=145  Identities=15%  Similarity=0.119  Sum_probs=90.1

Q ss_pred             CeEEE--------eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-------
Q 027060           76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-------  140 (229)
Q Consensus        76 ~~i~~--------~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-------  140 (229)
                      .+|++        +||+++|++..   .+|+++| +|.+||++||+||||||||||+|+|+|+++   |++|.       
T Consensus        82 ~~i~i~~l~~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~  154 (607)
T 3bk7_A           82 NAISIVNLPEQLDEDCVHRYGVNA---FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN  154 (607)
T ss_dssp             CCCEEEEECTTGGGSEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred             ceEEEecCCccccCCeEEEECCCC---eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence            45788        89999997641   2788999 999999999999999999999999999999   99996       


Q ss_pred             ---EecCCCHHHH-----HhhcCCCcccCcc----h--hhhHHHHHHccccc----------------c--CCCCCCCCC
Q 027060          141 ---SFDSQDPKEA-----HARRGAPWTFNPL----L--LLNCLKNLRNQGSV----------------Y--APSFDHGVG  188 (229)
Q Consensus       141 ---~~~g~~~~~~-----~~~~~~~~~~~~~----~--~~tv~e~l~~~~~~----------------~--~~~~~~~~~  188 (229)
                         .+.|.++...     ..+..+...+|..    .  ..++.+++......                .  ...++.++.
T Consensus       155 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGek  234 (607)
T 3bk7_A          155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGEL  234 (607)
T ss_dssp             HHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHH
T ss_pred             hhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHH
Confidence               2456654321     1122333323221    1  12677776432110                0  011233444


Q ss_pred             CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++..+.++..++++|++|||+..||...+..+.+++..
T Consensus       235 QRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~  273 (607)
T 3bk7_A          235 QRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR  273 (607)
T ss_dssp             HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            444444444455555555555555555556667766653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.73  E-value=1.5e-18  Score=164.71  Aligned_cols=136  Identities=14%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhc
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARR  154 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~  154 (229)
                      ..+++++|+++.|++.     .|++++|+|.+||++||+||||||||||+|+|+|+++   |++|.....         .
T Consensus       355 ~~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~---------~  417 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD---------L  417 (607)
T ss_dssp             CEEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC---------C
T ss_pred             ceEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe---------e
Confidence            4589999999999763     5889999999999999999999999999999999999   999973221         1


Q ss_pred             CCCcccCcc---hhhhHHHHHHcc-c-cc-------------c--------CCCCCCCCCCchhhhhhccCCccEEEecC
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQ-G-SV-------------Y--------APSFDHGVGDPVEDDILVGLQHKVVIVDG  208 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~-~-~~-------------~--------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~  208 (229)
                      .+.+.+|..   ..+|+.+++... . ..             .        ...++.++.+++..+.++...+++|++||
T Consensus       418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE  497 (607)
T 3bk7_A          418 TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE  497 (607)
T ss_dssp             CEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             EEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            222233322   225666665432 0 00             0        01122334444444444455555555555


Q ss_pred             CeeeecccCHHHHHHHHhh
Q 027060          209 NYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       209 ~~LlLDEP~~~~l~~~l~~  227 (229)
                      |+..||...+..+.+++..
T Consensus       498 Pt~~LD~~~~~~l~~~l~~  516 (607)
T 3bk7_A          498 PSAYLDVEQRLAVSRAIRH  516 (607)
T ss_dssp             TTTTCCHHHHHHHHHHHHH
T ss_pred             CccCCCHHHHHHHHHHHHH
Confidence            5555555567777776653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.73  E-value=1.7e-18  Score=162.29  Aligned_cols=59  Identities=17%  Similarity=0.340  Sum_probs=54.1

Q ss_pred             CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ..++++++|+++.|++.     .|++++|+|.+||++||+||||||||||+|+|+|+++   |++|.
T Consensus       284 ~~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~  342 (538)
T 1yqt_A          284 RETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGK  342 (538)
T ss_dssp             CCEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCC
T ss_pred             CCeEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeE
Confidence            34589999999999763     5889999999999999999999999999999999999   99997

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.72  E-value=2.4e-18  Score=161.22  Aligned_cols=56  Identities=25%  Similarity=0.314  Sum_probs=48.2

Q ss_pred             EEE-eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        78 i~~-~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      .++ +||+|+|++..   .+++++| +|.+||++||+||||||||||+|+|+|+++   |++|.
T Consensus        21 ~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~   77 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNA---FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCG   77 (538)
T ss_dssp             ---CCCEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTT
T ss_pred             hhHhcCcEEEECCcc---ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCc
Confidence            455 68999998641   2688999 999999999999999999999999999999   99997

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.65  E-value=8.1e-17  Score=159.01  Aligned_cols=65  Identities=20%  Similarity=0.298  Sum_probs=57.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      .++|+++|+++.|++..  ..+|+|+||+|.+|+++||+||||||||||+|+|+|+++   |++|. .+++
T Consensus       669 ~~mL~v~nLs~~Y~g~~--~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~  734 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTS--KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHE  734 (986)
T ss_dssp             SEEEEEEEEEECCTTCS--SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECT
T ss_pred             CceEEEEeeEEEeCCCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcC
Confidence            45899999999997521  127899999999999999999999999999999999999   99997 6654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.61  E-value=1.5e-16  Score=152.46  Aligned_cols=41  Identities=24%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHH---------------------HHHHHHhcccCCCCc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKA  139 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl---------------------k~L~gll~~~~p~~G  139 (229)
                      +|+||||+|++||++||+||||||||||+                     +++.|+..   |+.|
T Consensus        33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~   94 (670)
T 3ux8_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVD   94 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCS
T ss_pred             ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCcc
Confidence            79999999999999999999999999998                     88888888   7743

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.61  E-value=9.9e-18  Score=139.13  Aligned_cols=44  Identities=25%  Similarity=0.269  Sum_probs=38.1

Q ss_pred             EEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        85 ~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      |.|++..    +|+++    ++|++++|+||||||||||+++|+|+ +   |++|.
T Consensus         8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~   51 (208)
T 3b85_A            8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQ   51 (208)
T ss_dssp             CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTS
T ss_pred             CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCe
Confidence            3555543    78885    89999999999999999999999999 9   99995

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.8e-16  Score=149.07  Aligned_cols=132  Identities=14%  Similarity=0.180  Sum_probs=84.5

Q ss_pred             eeeeEEcCccccccccccceeeeecCC-----cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcC
Q 027060           81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRG  155 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i~~G-----e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~  155 (229)
                      .++++.|++..   .++++++|++.+|     |++||+||||||||||+|+|+|+++   |++|..+.+.         +
T Consensus       350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~~~---------~  414 (608)
T 3j16_B          350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIPKL---------N  414 (608)
T ss_dssp             SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCCSC---------C
T ss_pred             cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCccCC---------c
Confidence            56778887532   2688999999998     8899999999999999999999999   9998522111         1


Q ss_pred             CCcccCcc---hhhhHHHHHHcc---------------------ccc--cCCCCCCCCCCchhhhhhccCCccEEEecCC
Q 027060          156 APWTFNPL---LLLNCLKNLRNQ---------------------GSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  209 (229)
Q Consensus       156 ~~~~~~~~---~~~tv~e~l~~~---------------------~~~--~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~  209 (229)
                      +.+.+|..   ...++.+++...                     ...  .....+.++.+++..+.++..++++|++|||
T Consensus       415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEP  494 (608)
T 3j16_B          415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEP  494 (608)
T ss_dssp             EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred             EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            11111111   113444444321                     101  1113344556666666666666777777777


Q ss_pred             eeeecccCHHHHHHHHhh
Q 027060          210 YLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       210 ~LlLDEP~~~~l~~~l~~  227 (229)
                      +..||...+..+.+++..
T Consensus       495 T~gLD~~~~~~i~~ll~~  512 (608)
T 3j16_B          495 SAYLDSEQRIICSKVIRR  512 (608)
T ss_dssp             TTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            777776667777776653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.60  E-value=3.8e-16  Score=154.25  Aligned_cols=49  Identities=22%  Similarity=0.268  Sum_probs=45.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .|...|+++.|++..    +|+++||+|.+|++++|+||||||||||+|+|+|
T Consensus       435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            566679999998765    8999999999999999999999999999999996

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.59  E-value=1e-16  Score=131.97  Aligned_cols=122  Identities=30%  Similarity=0.505  Sum_probs=84.3

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHH-HH------hhcCCCcccCcchhhhHHHHH
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKE-AH------ARRGAPWTFNPLLLLNCLKNL  172 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~-~~------~~~~~~~~~~~~~~~tv~e~l  172 (229)
                      .++|++++|+||||||||||+++|+|++.   |.   .|. .++|..... ..      .+.+++..++...+...+..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l   95 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHAL   95 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHH
Confidence            57899999999999999999999999998   64   454 566653211 11      123566666666555666777


Q ss_pred             HccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060          173 RNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  228 (229)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~  228 (229)
                      ..+..+..+.++.+..........+....++++.|++++++|||.|..+.+.+|.+
T Consensus        96 ~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~  151 (208)
T 3c8u_A           96 KHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVS  151 (208)
T ss_dssp             HHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEE
T ss_pred             hcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEE
Confidence            66655555666666554433333333334899999999999999988777766654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.59  E-value=7.4e-16  Score=146.16  Aligned_cols=139  Identities=15%  Similarity=0.169  Sum_probs=82.3

Q ss_pred             eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceE------------ecCCCHHH
Q 027060           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQDPKE  149 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~------------~~g~~~~~  149 (229)
                      +++++|+...   ..+++++ .+.+||++||+||||||||||+|+|+|+++   |++|..            +.|.+...
T Consensus        82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~  154 (608)
T 3j16_B           82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN  154 (608)
T ss_dssp             TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred             CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence            5678887542   2455555 689999999999999999999999999999   999963            23333221


Q ss_pred             HH-----hhcCC---CcccCcc------hhhhHHHHHH------------------cccccc--CCCCCCCCCCchhhhh
Q 027060          150 AH-----ARRGA---PWTFNPL------LLLNCLKNLR------------------NQGSVY--APSFDHGVGDPVEDDI  195 (229)
Q Consensus       150 ~~-----~~~~~---~~~~~~~------~~~tv~e~l~------------------~~~~~~--~~~~~~~~~~~~~~~l  195 (229)
                      ..     .....   ++..+..      ...++.+++.                  +.....  ...++.++.+++..+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAr  234 (608)
T 3j16_B          155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGM  234 (608)
T ss_dssp             HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHH
T ss_pred             hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHH
Confidence            10     01111   0110000      0012222221                  111111  1234455666666666


Q ss_pred             hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++..++++|++|||+..||......+.+++..
T Consensus       235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~  266 (608)
T 3j16_B          235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS  266 (608)
T ss_dssp             HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHG
T ss_pred             HHHhCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence            66667777777777777777677777777654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.57  E-value=3.6e-17  Score=143.57  Aligned_cols=131  Identities=20%  Similarity=0.261  Sum_probs=82.1

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeee-----------------------ecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~-----------------------i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ...|++++|++.|+.      +++++++.                       +.+|+++||+||||||||||+++|+|++
T Consensus        41 ~~~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           41 GEQIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             TCCCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            346999999999963      34444443                       8999999999999999999999999999


Q ss_pred             cccCCCCc---e-EecCCC---HHHHHhhcC------CCcccCcchhhhHHHHHHcccc-ccCCCCCCCCCCchhhhhhc
Q 027060          132 NKIWPQKA---S-SFDSQD---PKEAHARRG------APWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV  197 (229)
Q Consensus       132 ~~~~p~~G---~-~~~g~~---~~~~~~~~~------~~~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~  197 (229)
                      +   |..|   . .+.-..   ........+      .+..++...+...++.+..+.. ...+.++.++.+++..+.++
T Consensus       115 ~---~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al  191 (312)
T 3aez_A          115 A---RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQV  191 (312)
T ss_dssp             H---TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEE
T ss_pred             c---ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHh
Confidence            9   8765   2 221110   111122222      1212222223444555542222 33456777888777666666


Q ss_pred             cCCccEEEecCCeeeec
Q 027060          198 GLQHKVVIVDGNYLFLD  214 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLD  214 (229)
                      ...++|||+|++++++|
T Consensus       192 ~~~p~ilIlDep~~~~d  208 (312)
T 3aez_A          192 VRHPDILILEGLNVLQT  208 (312)
T ss_dssp             ECSCSEEEEECTTTTCC
T ss_pred             ccCCCEEEECCccccCC
Confidence            66677777777777765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.54  E-value=2.3e-15  Score=140.99  Aligned_cols=52  Identities=19%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             eeeeEEcCccccccccccceeeee-cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           81 RCMDEVYDALAQRLLPTSALASNV-NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i-~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ++.+.+|+...     |+-..+.+ ++||++||+||||||||||+|+|+|+++   |++|.
T Consensus         3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~   55 (538)
T 3ozx_A            3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGD   55 (538)
T ss_dssp             CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTC
T ss_pred             CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCc
Confidence            45788998753     33444554 4999999999999999999999999999   99995

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.7e-17  Score=152.83  Aligned_cols=82  Identities=11%  Similarity=0.011  Sum_probs=61.9

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e--EecCCCHHHHH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S--SFDSQDPKEAH  151 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~--~~~g~~~~~~~  151 (229)
                      .++++++||++.|+          +++|++++|++++|+||||||||||+|+|+|++.   |++| .  .++| +.    
T Consensus       116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg-~~----  177 (460)
T 2npi_A          116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINL-DP----  177 (460)
T ss_dssp             CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEEC-CT----
T ss_pred             cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcC-Cc----
Confidence            34677888887774          6889999999999999999999999999999999   9999 4  5666 22    


Q ss_pred             hhcCCCcccCcc---h---hhhHHHHHHccc
Q 027060          152 ARRGAPWTFNPL---L---LLNCLKNLRNQG  176 (229)
Q Consensus       152 ~~~~~~~~~~~~---~---~~tv~e~l~~~~  176 (229)
                       +.++.+.+|..   .   .+++.+|+ ++.
T Consensus       178 -~~~i~~vpq~~~l~~~~~~~tv~eni-~~~  206 (460)
T 2npi_A          178 -QQPIFTVPGCISATPISDILDAQLPT-WGQ  206 (460)
T ss_dssp             -TSCSSSCSSCCEEEECCSCCCTTCTT-CSC
T ss_pred             -cCCeeeeccchhhcccccccchhhhh-ccc
Confidence             23444444443   1   25777777 643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.50  E-value=4.7e-15  Score=118.64  Aligned_cols=101  Identities=14%  Similarity=0.029  Sum_probs=60.7

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHH------------HHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcchh
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAA------------EVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLLL  165 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk------------~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~  165 (229)
                      |+||++++||+++|+||||||||||+|            .+.|++.   ++.|. .+.+.......              
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~---~~~~~~~~~~~~~~~~~--------------   63 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMS---DDENDQTVTGAAFDVLH--------------   63 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHC---SSTTCGGGHHHHHHHHH--------------
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhc---CcccchhhHHHHHHHHH--------------
Confidence            689999999999999999999999999            6666666   55543 22211000000              


Q ss_pred             hhHHHHHHccccc--c-CCCCCCCCCCchhhhhhccCCccEEEecCCeeeeccc
Q 027060          166 LNCLKNLRNQGSV--Y-APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  216 (229)
Q Consensus       166 ~tv~e~l~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP  216 (229)
                      ......+..+...  . ....+.+..+++..+.++...++++++|+|+-.||+.
T Consensus        64 ~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~  117 (171)
T 4gp7_A           64 YIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER  117 (171)
T ss_dssp             HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred             HHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence            0011111111111  0 0111234456666667777778888888888888876

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.50  E-value=1.4e-16  Score=126.88  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA  156 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~  156 (229)
                      ++.+++++.|++..    +++++||+|++|++++|+||||||||||+|+|+|++    |++|. .+.|.++........+
T Consensus         8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~~~~~~~~~   79 (158)
T 1htw_A            8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLVEEYNIAGK   79 (158)
T ss_dssp             ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCEEEEEETTE
T ss_pred             cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeeeeeccCCCc
Confidence            33456788887654    789999999999999999999999999999999987    46786 7778765321111122


Q ss_pred             -CcccCcchhhhHHHHHHc
Q 027060          157 -PWTFNPLLLLNCLKNLRN  174 (229)
Q Consensus       157 -~~~~~~~~~~tv~e~l~~  174 (229)
                       ++.++.+ .+++.+++.+
T Consensus        80 ~~q~~~l~-~ltv~e~l~~   97 (158)
T 1htw_A           80 MIYHFDLY-RLADPEELEF   97 (158)
T ss_dssp             EEEEEECT-TCSCTTHHHH
T ss_pred             ceeccccc-cCCcHHHHHH
Confidence             3333333 4788888854

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.49  E-value=6.6e-16  Score=134.95  Aligned_cols=131  Identities=19%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeee-------------------cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ  137 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i-------------------~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~  137 (229)
                      +|++++|++.|+.      +++++++.+                   .+|+++||+|+||||||||+++|+|++.. .|+
T Consensus        37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~  109 (308)
T 1sq5_A           37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE  109 (308)
T ss_dssp             TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred             ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence            5899999999942      678999988                   89999999999999999999999998741 146


Q ss_pred             Cce-Ee---cCCCHH-HHHhhcCCCcccCcchhhhHHHHHHcccc-------ccCCCCCCCCCCchhhhhhccCCccEEE
Q 027060          138 KAS-SF---DSQDPK-EAHARRGAPWTFNPLLLLNCLKNLRNQGS-------VYAPSFDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       138 ~G~-~~---~g~~~~-~~~~~~~~~~~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      +|. .+   +|.... ......++.+.+..+..+++.+++.+...       +..|.++...+++..........++++|
T Consensus       110 ~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivI  189 (308)
T 1sq5_A          110 HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILI  189 (308)
T ss_dssp             CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEE
T ss_pred             CCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEE
Confidence            775 66   665421 22333454444444445677777665322       3345666666665543333334578999


Q ss_pred             ecCCeeeec
Q 027060          206 VDGNYLFLD  214 (229)
Q Consensus       206 ~d~~~LlLD  214 (229)
                      +|+++++.+
T Consensus       190 lEG~~l~~~  198 (308)
T 1sq5_A          190 LEGLNVLQS  198 (308)
T ss_dssp             EECTTTTCC
T ss_pred             ECchhhCCC
Confidence            999999887

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.45  E-value=6.1e-15  Score=121.21  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=26.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|  .+|++|++++|+||||||||||+|+|+|+++
T Consensus        11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            6677  7899999999999999999999999999985

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.43  E-value=3.6e-14  Score=135.87  Aligned_cols=33  Identities=30%  Similarity=0.508  Sum_probs=31.2

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      +|+||||+|++||+++|+||||||||||+++|.
T Consensus       337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            699999999999999999999999999998764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.43  E-value=6.6e-14  Score=122.23  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=59.0

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---------HHhhcCCCcccCc----
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---------AHARRGAPWTFNP----  162 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---------~~~~~~~~~~~~~----  162 (229)
                      +++++|++.+|++++|+||||||||||+++|+|+++   |++|. .+.|.+...         ...+.++++.+|.    
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~  166 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA  166 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence            357899999999999999999999999999999999   99996 788876321         1123456555553    


Q ss_pred             chhhhHHHHHHcc
Q 027060          163 LLLLNCLKNLRNQ  175 (229)
Q Consensus       163 ~~~~tv~e~l~~~  175 (229)
                      .+..++.+++.++
T Consensus       167 ~~~~~v~e~l~~~  179 (302)
T 3b9q_A          167 KAATVLSKAVKRG  179 (302)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            3447899999764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.42  E-value=3.2e-15  Score=131.68  Aligned_cols=141  Identities=23%  Similarity=0.316  Sum_probs=100.5

Q ss_pred             eeEEcCccccccccccceeeeecCCc------EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce----EecCCC--HHH-
Q 027060           83 MDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----SFDSQD--PKE-  149 (229)
Q Consensus        83 ls~~y~~~~~~~~~l~~isl~i~~Ge------~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~----~~~g~~--~~~-  149 (229)
                      +++.|++..    .+++++..+..+.      ++||+||||||||||+++|.+++.. .|++|.    ..+|..  ... 
T Consensus        66 l~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~~v~~i~~D~f~~~~~~l  140 (321)
T 3tqc_A           66 LSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHPNVEVITTDGFLYSNAKL  140 (321)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCCCEEEEEGGGGBCCHHHH
T ss_pred             HHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCeEEEEeecccccchhhh
Confidence            455566654    6778888887776      9999999999999999999999861 123442    233321  111 


Q ss_pred             ----HHhhcCCCcccCcchhhhHHHHHHccc-cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecc------cCH
Q 027060          150 ----AHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVW  218 (229)
Q Consensus       150 ----~~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE------P~~  218 (229)
                          ...+.|.+..++...+...++.+..+. .+..|.|++..+++..........++++|+|+++++.|+      +.|
T Consensus       141 ~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~  220 (321)
T 3tqc_A          141 EKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQ  220 (321)
T ss_dssp             HHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCC
T ss_pred             hhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchh
Confidence                123456677777777788899998887 677888999888876554455567899999999999988      234


Q ss_pred             HHHHHHHhhh
Q 027060          219 KDVSSMFDEK  228 (229)
Q Consensus       219 ~~l~~~l~~~  228 (229)
                      ..+.+++|.+
T Consensus       221 ~~l~~~~D~~  230 (321)
T 3tqc_A          221 VFVSDFFDFS  230 (321)
T ss_dssp             CCGGGGCSEE
T ss_pred             hhhhhhcCeE
Confidence            4455665554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.40  E-value=1.3e-13  Score=116.21  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=26.8

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|+++||++++|+++||+||||||||||+++|+|++.
T Consensus        14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.37  E-value=7.7e-15  Score=133.28  Aligned_cols=49  Identities=14%  Similarity=0.184  Sum_probs=43.5

Q ss_pred             cccceeeeecCCc--------------------EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        96 ~l~~isl~i~~Ge--------------------~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      +|++|+|+|++|+                    ++||+||||||||||+|+|+|+++   |++|. .++|.+.
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~  107 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV  107 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC---
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeec
Confidence            7899999999999                    999999999999999999999999   99997 6666543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.36  E-value=1.3e-14  Score=128.15  Aligned_cols=48  Identities=21%  Similarity=0.356  Sum_probs=44.6

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      ++++++|.+++|++++|+||||||||||+++|+|+++   |++|. .++|.+
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~  208 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTE  208 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSC
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCee
Confidence            6889999999999999999999999999999999999   99997 777753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.36  E-value=3.2e-13  Score=120.54  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=58.3

Q ss_pred             cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---------HHhhcCCCcccCc----c
Q 027060           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---------AHARRGAPWTFNP----L  163 (229)
Q Consensus        98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---------~~~~~~~~~~~~~----~  163 (229)
                      ..++|++.+|++++|+||||||||||+++|+|+++   |++|. .+.|.+...         ...+.++++.+|.    .
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~  224 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK  224 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence            46899999999999999999999999999999999   99896 788876421         1123456555543    3


Q ss_pred             hhhhHHHHHHcc
Q 027060          164 LLLNCLKNLRNQ  175 (229)
Q Consensus       164 ~~~tv~e~l~~~  175 (229)
                      +..++.+++.++
T Consensus       225 p~~tv~e~l~~~  236 (359)
T 2og2_A          225 AATVLSKAVKRG  236 (359)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHH
Confidence            447899999764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.33  E-value=1.6e-13  Score=125.45  Aligned_cols=141  Identities=14%  Similarity=0.140  Sum_probs=92.0

Q ss_pred             CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC---HHHH
Q 027060           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD---PKEA  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~---~~~~  150 (229)
                      ++++++++++.|+ +..    +|+++ |+|.+|++++|+||||||||||+++|+|+.+   |+.|. .+.|++   +...
T Consensus       130 ~~l~~~~v~~~~~tg~~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~  201 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVR----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF  201 (438)
T ss_dssp             CTTTSCCCCSBCCCSCH----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred             CceEEeccceecCCCce----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence            4688999999997 333    89999 9999999999999999999999999999999   99997 788883   3321


Q ss_pred             --------HhhcCCCcccCc----chhhhHHHHHHccccccCCCCCCC---CCCchhhhhhccCCccE--EEecCC-eee
Q 027060          151 --------HARRGAPWTFNP----LLLLNCLKNLRNQGSVYAPSFDHG---VGDPVEDDILVGLQHKV--VIVDGN-YLF  212 (229)
Q Consensus       151 --------~~~~~~~~~~~~----~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~rv--Li~d~~-~Ll  212 (229)
                              ..+..+.+.+|.    ...+++.+|+.+....+.. ....   ..+. ...++.++ +|+  .+.+|+ .-.
T Consensus       202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-~~~~v~~~ld~-l~~lS~g~-qrvslAl~~p~~t~g  278 (438)
T 2dpy_A          202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDS-LTRYAMAQ-REIALAIGEPPATKG  278 (438)
T ss_dssp             HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEEC-HHHHHHHH-HHHHHHTTCCCCSSS
T ss_pred             HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHh-HHHHHHHH-HHHHHHhCCCccccc
Confidence                    122333344432    2337888888765432211 0000   0000 12233332 232  233444 677


Q ss_pred             ecccCHHHHHHHHhh
Q 027060          213 LDGGVWKDVSSMFDE  227 (229)
Q Consensus       213 LDEP~~~~l~~~l~~  227 (229)
                      ||......+.+++..
T Consensus       279 lD~~~~~~l~~ll~r  293 (438)
T 2dpy_A          279 YPPSVFAKLPALVER  293 (438)
T ss_dssp             CCTTHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            888888888877754

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.32  E-value=5.4e-13  Score=120.05  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=34.2

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++++|++.+| +++|+|+||||||||+++|.+++.
T Consensus        50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999 999999999999999999999875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.31  E-value=4.5e-13  Score=119.09  Aligned_cols=65  Identities=14%  Similarity=0.237  Sum_probs=57.7

Q ss_pred             CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH
Q 027060           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK  148 (229)
Q Consensus        76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~  148 (229)
                      ++++++++++.|+ +..    +++++ |+|.+|+++||+|+||||||||+++|+|+..   |+.|. .+.|++..
T Consensus        44 ~~i~~~~l~~~~~tg~~----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~~~  110 (347)
T 2obl_A           44 DPLLRQVIDQPFILGVR----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGERGR  110 (347)
T ss_dssp             CSTTCCCCCSEECCSCH----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHH
T ss_pred             CCeeecccceecCCCCE----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEecccHH
Confidence            4688999999997 433    89999 9999999999999999999999999999999   99997 77787643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.30  E-value=8.7e-14  Score=132.04  Aligned_cols=92  Identities=10%  Similarity=0.073  Sum_probs=47.5

Q ss_pred             eEEEeeeeEEcCccccccccccce----------eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDS  144 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~i----------sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g  144 (229)
                      .++++++++.|+....++  ++.+          +++++.   +||+|+||||||||+++|+|++.   | ++|. .++|
T Consensus        10 ~i~~~~l~~~~~~~~r~l--l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g   81 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPC--IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP   81 (608)
T ss_dssp             ----------CHHHHHHH--HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred             hhhhhhhhHHHHHHHHHH--HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence            588999999997643221  2222          355554   99999999999999999999987   8 7887 7777


Q ss_pred             CCHH--------HHHhhcCC-CcccCcchhhhHHHHHHccc
Q 027060          145 QDPK--------EAHARRGA-PWTFNPLLLLNCLKNLRNQG  176 (229)
Q Consensus       145 ~~~~--------~~~~~~~~-~~~~~~~~~~tv~e~l~~~~  176 (229)
                      .++.        ..+..+++ ++.+.....+++.+|+.+..
T Consensus        82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~  122 (608)
T 3szr_A           82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ  122 (608)
T ss_dssp             EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred             EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence            6531        11122333 22233345588999987753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.30  E-value=1.7e-12  Score=126.88  Aligned_cols=48  Identities=21%  Similarity=0.313  Sum_probs=42.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHH-HHHHh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAE-VVRRI  131 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~-L~gll  131 (229)
                      ..+|+++++++     .    .|+||||+|++|+++||+|+||||||||+++ |.|++
T Consensus       500 ~~~L~v~~l~~-----~----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          500 AGWLELNGVTR-----N----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             SCEEEEEEEEE-----T----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             CceEEEEeeee-----c----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            45799999975     1    5889999999999999999999999999997 78776

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.29  E-value=3.9e-13  Score=125.30  Aligned_cols=66  Identities=9%  Similarity=0.145  Sum_probs=54.3

Q ss_pred             CCeEEEeeeeEEcCccccccccccceee-eecCCcEEEEEcCCCCcHHHHHHH--HHHHhcccCCCCce-EecCCCH
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl-~i~~Ge~v~IiGpNGsGKSTLlk~--L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      ..+++.+++.+.+++..    +|++++| .|++|++++|+||||||||||+++  ++|+++   |++|. ++.|++.
T Consensus        10 ~~~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~   79 (525)
T 1tf7_A           10 NNNSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEET   79 (525)
T ss_dssp             ----CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSC
T ss_pred             CCCccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence            34577777876665544    8999999 999999999999999999999999  789998   89997 8888764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.28  E-value=1.1e-13  Score=119.08  Aligned_cols=67  Identities=16%  Similarity=0.121  Sum_probs=36.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcch---hhhHHHHHHccccc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLL---LLNCLKNLRNQGSV  178 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~  178 (229)
                      .++|+||||||||||+|+|+|+..   |++|. .++|.++.....+..+.+.+|...   .+|+.|++.++...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~   74 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI   74 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhc
Confidence            489999999999999999999999   99997 777765422112223334444332   37888888776543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.27  E-value=5.6e-13  Score=114.01  Aligned_cols=58  Identities=21%  Similarity=0.202  Sum_probs=47.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-Cce-EecCCCH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KAS-SFDSQDP  147 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-~G~-~~~g~~~  147 (229)
                      +++++++++.    .    +|++++  +.+|++++|+||||||||||+++|+|+++   |+ +|. .+.|.++
T Consensus         5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i   64 (261)
T 2eyu_A            5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI   64 (261)
T ss_dssp             -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC
T ss_pred             CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc
Confidence            3556677532    2    788998  89999999999999999999999999998   87 886 6666553

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.25  E-value=2.3e-13  Score=118.94  Aligned_cols=50  Identities=16%  Similarity=0.319  Sum_probs=46.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .|+++||++.|+ ..    +|+++||+|++|++++|+||||||||||+++|+|++
T Consensus       101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            488899999997 33    799999999999999999999999999999999987

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.23  E-value=1.1e-11  Score=122.01  Aligned_cols=44  Identities=27%  Similarity=0.380  Sum_probs=39.1

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      +.|++++++.     .    .|+||||+|++|+++||+|+||||||||+++|+
T Consensus       628 ~~L~v~~l~~-----~----~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          628 RWLEVVGARE-----H----NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             CEEEEEEECS-----S----SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             eEEEEecCcc-----c----ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            5799999862     1    589999999999999999999999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.23  E-value=5.3e-12  Score=103.20  Aligned_cols=109  Identities=22%  Similarity=0.261  Sum_probs=58.7

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceE-----ec-CC--CHHHHHhhcCC--CcccCcchhhhHHHHHH
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----FD-SQ--DPKEAHARRGA--PWTFNPLLLLNCLKNLR  173 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~-----~~-g~--~~~~~~~~~~~--~~~~~~~~~~tv~e~l~  173 (229)
                      .++|+++||+|+||||||||+++|+|++.   |.-+..     +. ..  .... .....+  +..++...+...++.+.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~~i~~v~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~   78 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG---ERVALLPMDHYYKDLGHLPLEE-RLRVNYDHPDAFDLALYLEHAQALL   78 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG---GGEEEEEGGGCBCCCTTSCHHH-HHHSCTTSGGGBCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecCccccCcccccHHH-hcCCCCCChhhhhHHHHHHHHHHHH
Confidence            56899999999999999999999999987   421211     11 01  1111 111111  11111112233444444


Q ss_pred             ccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccC
Q 027060          174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV  217 (229)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~  217 (229)
                      .......+.++...+++... ......+++++.||+++++|||.
T Consensus        79 ~~~~~~~~~~~~s~g~~~~~-~~~~~~~~~li~~~~ll~~de~~  121 (211)
T 3asz_A           79 RGLPVEMPVYDFRAYTRSPR-RTPVRPAPVVILEGILVLYPKEL  121 (211)
T ss_dssp             TTCCEEECCEETTTTEECSS-CEEECCCSEEEEESTTTTSSHHH
T ss_pred             cCCCcCCCcccCcccCCCCC-eEEeCCCcEEEEeehhhccCHHH
Confidence            44433334444433333211 11223478999999999998863

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.22  E-value=3.2e-12  Score=112.79  Aligned_cols=118  Identities=13%  Similarity=0.064  Sum_probs=77.7

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH---------HHHhhcCCCcccCc---chhhhHH
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---------EAHARRGAPWTFNP---LLLLNCL  169 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---------~~~~~~~~~~~~~~---~~~~tv~  169 (229)
                      ..++|++++|+||||||||||+++|+|++.   |++|. .+.|.++.         ....+.++++.++.   .+..++.
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~  201 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY  201 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence            447899999999999999999999999999   99996 77776531         12345676555543   3458899


Q ss_pred             HHHHccccccCC--CCC----CCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHH
Q 027060          170 KNLRNQGSVYAP--SFD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  225 (229)
Q Consensus       170 e~l~~~~~~~~~--~~~----~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l  225 (229)
                      +|+.++......  ..+    .........+++.  ..+++..++++++||.+...++.+.+
T Consensus       202 e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~--i~ral~~de~llvLDa~t~~~~~~~~  261 (328)
T 3e70_C          202 DAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKK--IARVTKPNLVIFVGDALAGNAIVEQA  261 (328)
T ss_dssp             HHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHH--HHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred             HHHHHHHhccchhhHHhhccchhHHHHHHHHHHH--HHHHhcCCCCEEEEecHHHHHHHHHH
Confidence            999765321110  001    1112233333332  35667789999999998765555543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.21  E-value=8.2e-13  Score=115.07  Aligned_cols=53  Identities=17%  Similarity=0.233  Sum_probs=22.4

Q ss_pred             eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH-hcccCCCCceEecCCC
Q 027060           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQD  146 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl-l~~~~p~~G~~~~g~~  146 (229)
                      .||++.|++..    ++++++|+|      +|+|+||+|||||+++|.|. +.   |++|..+.|.+
T Consensus         2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~   55 (301)
T 2qnr_A            2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEK   55 (301)
T ss_dssp             --------------------CEEE------EEEEETTSSHHHHHHHHHC------------------
T ss_pred             CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcc
Confidence            57899998765    899999988      99999999999999999997 76   78885445544

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.21  E-value=1e-11  Score=114.60  Aligned_cols=48  Identities=27%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      +|+++||+|++ ++++|+||||||||||+++|+|+++   |++|. .++|+++
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~   67 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTTE   67 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTTS
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEEc
Confidence            78999999999 9999999999999999999999999   99997 8888764

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.21  E-value=1.7e-12  Score=129.44  Aligned_cols=52  Identities=19%  Similarity=0.249  Sum_probs=41.7

Q ss_pred             CeEEEee-----eeEEc-CccccccccccceeeeecC-------CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        76 ~~i~~~~-----ls~~y-~~~~~~~~~l~~isl~i~~-------Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++|++++     |++.| ++..    +++|++|++.+       |++++|+||||||||||||+| |++.
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             ceEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            4699999     99999 4433    89999999987       999999999999999999999 9886

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.18  E-value=1.3e-11  Score=114.16  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---------HHhhcCCCcccCcc---
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---------AHARRGAPWTFNPL---  163 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---------~~~~~~~~~~~~~~---  163 (229)
                      -+++||++.+|++++|+|+||||||||+++|+|++.   +++|. .+.|.+...         ...+.++++.++..   
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~  359 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD  359 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence            358999999999999999999999999999999999   89896 666554311         11345666666543   


Q ss_pred             hhhhHHHHHHccc
Q 027060          164 LLLNCLKNLRNQG  176 (229)
Q Consensus       164 ~~~tv~e~l~~~~  176 (229)
                      ...++.+++.++.
T Consensus       360 p~~tV~e~l~~a~  372 (503)
T 2yhs_A          360 SASVIFDAIQAAK  372 (503)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4578999998753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.16  E-value=5.5e-13  Score=118.01  Aligned_cols=65  Identities=23%  Similarity=0.274  Sum_probs=57.7

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      .+|+++++++.|+...    ++++++|++.+|++++|+|+||||||||+++|+|++.   |++|. .+.+.++
T Consensus        28 ~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~d~   93 (337)
T 2qm8_A           28 TLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAVDP   93 (337)
T ss_dssp             HHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEECG
T ss_pred             HHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEEcC
Confidence            3588899999997654    7899999999999999999999999999999999999   98886 6777655

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.15  E-value=1.2e-11  Score=102.67  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=25.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .|+||||+|++|++++|+||||||||||+++|+|++
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            588999999999999999999999999999999976

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.14  E-value=5.6e-12  Score=105.09  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=40.8

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCce-EecCCCHHHHHhhcCCCcccCcch
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQDPKEAHARRGAPWTFNPLL  164 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~g~~~~~~~~~~~~~~~~~~~~  164 (229)
                      +-.-..++|++++|+||||||||||+++|+|+++   |  ..|. .+.+.++.. ..+.++.+.|+...
T Consensus         8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~   72 (219)
T 1s96_A            8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHD   72 (219)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCT-TCCBTTTBEECCHH
T ss_pred             cccccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCc-ccccCceEEECCHH
Confidence            4455688999999999999999999999999987   6  4564 555654322 12345666676653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.14  E-value=3.9e-11  Score=104.77  Aligned_cols=67  Identities=19%  Similarity=0.150  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------H---HHhhcCCCcccCcc---hhhhHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------E---AHARRGAPWTFNPL---LLLNCLKNL  172 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------~---~~~~~~~~~~~~~~---~~~tv~e~l  172 (229)
                      +|++++|+||||||||||+++|+|++.   |++|. .+.|.++.      .   ...+.++++.+|..   +..++.+++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v  177 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV  177 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence            699999999999999999999999999   99996 78777631      1   11244566666543   447888888


Q ss_pred             Hcc
Q 027060          173 RNQ  175 (229)
Q Consensus       173 ~~~  175 (229)
                      .+.
T Consensus       178 ~~~  180 (304)
T 1rj9_A          178 QAM  180 (304)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.12  E-value=2.1e-12  Score=117.48  Aligned_cols=51  Identities=16%  Similarity=0.057  Sum_probs=40.2

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      .+|+++||++.|++..    ++++++|+|      +|+|+||||||||+++|+|...   +..|
T Consensus        10 ~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~   60 (418)
T 2qag_C           10 GYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPE   60 (418)
T ss_dssp             -----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCC
T ss_pred             CcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCC
Confidence            4699999999998765    899999998      9999999999999999999876   5444

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.11  E-value=8.2e-12  Score=111.32  Aligned_cols=55  Identities=22%  Similarity=0.186  Sum_probs=41.2

Q ss_pred             eeeEEcCccccccccccceee-------eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-CceE
Q 027060           82 CMDEVYDALAQRLLPTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASS  141 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl-------~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-~G~~  141 (229)
                      .++.+|-..  ....|+++.+       .+.+|++++|+||||||||||+++|+|+++   ++ +|..
T Consensus        93 ~~~iR~~~~--~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i  155 (356)
T 3jvv_A           93 GAVFRTIPS--KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHI  155 (356)
T ss_dssp             EEEEEEECC--SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEE
T ss_pred             EEEEEECCC--CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEE
Confidence            444454332  2235667665       678899999999999999999999999998   87 4543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.09  E-value=1.2e-11  Score=109.92  Aligned_cols=76  Identities=32%  Similarity=0.627  Sum_probs=61.7

Q ss_pred             HhhcCCCcccCcchhhhHHHHHHcc-----------------------------ccccCCCCCCCCCCchhhhhhccCCc
Q 027060          151 HARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPVEDDILVGLQH  201 (229)
Q Consensus       151 ~~~~~~~~~~~~~~~~tv~e~l~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~  201 (229)
                      ..++|.|..|+...+...++.|..+                             ..+..|.|++..+++......+....
T Consensus       181 ~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~~~~~~v~~~~  260 (359)
T 2ga8_A          181 HKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFT  260 (359)
T ss_dssp             HTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEEEEEEEECTTC
T ss_pred             hccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCCCCceEecCCC
Confidence            4567788888888777777777665                             34567889988888887777777778


Q ss_pred             cEEEecCCeeeecccCHHHHHHHHh
Q 027060          202 KVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       202 rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      +++|+|+.+++++++.|..+++++|
T Consensus       261 ~iVIvEGi~LL~e~~~w~~l~~l~D  285 (359)
T 2ga8_A          261 RIVILEGLYLLYDQENWKKIYKTLA  285 (359)
T ss_dssp             CEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred             CEEEEEeehhhccccchhhhhhccc
Confidence            9999999999999888999999998

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.08  E-value=6.3e-12  Score=112.13  Aligned_cols=64  Identities=22%  Similarity=0.335  Sum_probs=51.8

Q ss_pred             EEeeeeEE---cCccccccc-------cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        79 ~~~~ls~~---y~~~~~~~~-------~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      +++++++.   |++....++       ++++++|.|++|++++|+||||||||||+++|+|+++   |++|. .++|.
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~  211 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV  211 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence            45677777   754211222       3489999999999999999999999999999999999   99997 77764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.08  E-value=1.2e-11  Score=101.72  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=28.4

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -|++|++++|+||||||||||+++|+|++.
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            688999999999999999999999999776

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.06  E-value=3.3e-12  Score=103.11  Aligned_cols=24  Identities=38%  Similarity=0.747  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|+||||||||||+++|+|++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999985

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.05  E-value=3.3e-11  Score=116.97  Aligned_cols=70  Identities=20%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCCCcccCcchhhhHHHHHHc
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRN  174 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~  174 (229)
                      .+++|++|+   |++++|+||||||||||||+|+|+...  ++.|..+...     ...  ++..++.+..+++.+|+..
T Consensus       567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~--~~~G~~vpa~-----~~~--i~~v~~i~~~~~~~d~l~~  634 (765)
T 1ewq_A          567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL--AQVGSFVPAE-----EAH--LPLFDGIYTRIGASDDLAG  634 (765)
T ss_dssp             CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH--HTTTCCBSSS-----EEE--ECCCSEEEEECCC------
T ss_pred             eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh--cccCceeehh-----ccc--eeeHHHhhccCCHHHHHHh
Confidence            378899998   999999999999999999999998630  4666533211     112  2333344444677787765


Q ss_pred             cc
Q 027060          175 QG  176 (229)
Q Consensus       175 ~~  176 (229)
                      +.
T Consensus       635 g~  636 (765)
T 1ewq_A          635 GK  636 (765)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.04  E-value=1e-10  Score=115.30  Aligned_cols=29  Identities=24%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl  124 (229)
                      .|+||||+|++|++++|+|+||||||||+
T Consensus       599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             cccccceEEcCCcEEEEEccCCCChhhhH
Confidence            68999999999999999999999999997

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.03  E-value=2.4e-11  Score=98.58  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=35.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh-----cccCCCCce
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS  140 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll-----~~~~p~~G~  140 (229)
                      +|+++|+++.|+. .    ++++  |.+.+|++++|+|+||||||||++.|+|..     .   |+.|.
T Consensus         3 ~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~   61 (210)
T 1pui_A            3 NLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGR   61 (210)
T ss_dssp             --------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC---------------
T ss_pred             chhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCcc
Confidence            5899999999973 2    6767  899999999999999999999999999977     5   66664

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.01  E-value=4.4e-10  Score=96.67  Aligned_cols=41  Identities=12%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +|+++++.+.+|++++|+|+||||||||++.|+|.+.   +.+|
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G   64 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMG   64 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSC
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcC
Confidence            7899999999999999999999999999999999998   8877

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.99  E-value=1.3e-10  Score=96.49  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHH-HHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~-gll~  132 (229)
                      ..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            467999999999999999999999999999999 9983

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.98  E-value=4.5e-10  Score=98.30  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ++++++.+| +++|+|+||||||||+++|..++
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            567888888 99999999999999999999765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.98  E-value=6e-11  Score=100.84  Aligned_cols=53  Identities=19%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             CeEEEeee-eEEc-CccccccccccceeeeecC---CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        76 ~~i~~~~l-s~~y-~~~~~~~~~l~~isl~i~~---Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++|+++|+ ++.| ++..    +|+++||+|.+   |++++|+|++||||||+.++|++.+.
T Consensus        16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            47999999 9999 5443    89999999999   99999999999999999999999775

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.96  E-value=8.1e-11  Score=96.46  Aligned_cols=46  Identities=15%  Similarity=0.308  Sum_probs=39.4

Q ss_pred             cccceee-eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (229)
Q Consensus        96 ~l~~isl-~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g  144 (229)
                      .|+++.. .+++|++++|+||||||||||++.|++...   +.+|. .+.+
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~   58 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVT   58 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEE
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEE
Confidence            6788887 899999999999999999999999999887   66664 4444

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.92  E-value=1.7e-10  Score=103.24  Aligned_cols=45  Identities=24%  Similarity=0.280  Sum_probs=36.9

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-Cce-EecCCC
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KAS-SFDSQD  146 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-~G~-~~~g~~  146 (229)
                      |++++  +.+|++++|+||||||||||+++|+|+++   |+ +|. .+.+.+
T Consensus       128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e~~  174 (372)
T 2ewv_A          128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDP  174 (372)
T ss_dssp             HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEESS
T ss_pred             HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEeccc
Confidence            44443  78999999999999999999999999998   87 786 454443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.92  E-value=6e-10  Score=90.12  Aligned_cols=32  Identities=25%  Similarity=0.543  Sum_probs=26.6

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |+++.+|++++|+||||||||||+++|+|+++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            56788999999999999999999999999863

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.91  E-value=1.2e-10  Score=105.96  Aligned_cols=49  Identities=24%  Similarity=0.308  Sum_probs=39.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcE--EEEEcCCCCcHHHHHHHHHHHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~--v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+++.+ ++.|++.     .|+++||+|.+|++  ++|+|+||||||||+++|+|+.
T Consensus        16 ~l~~~~-~~~y~~~-----~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           16 TVPLAG-HVGFDSL-----PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             -CCCCC-CC-CC-------CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             eEEEee-EEEECCe-----ecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            466777 8899763     28899999999999  9999999999999999999974

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.91  E-value=3.6e-10  Score=110.21  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=33.9

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|++|+ ++|++++|+||||||||||||+|+|+..
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~  632 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL  632 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence            78999999 9999999999999999999999999853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.87  E-value=2.5e-10  Score=106.26  Aligned_cols=132  Identities=13%  Similarity=0.061  Sum_probs=79.7

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc--eEecCCCHH-HHHhh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDPK-EAHAR  153 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G--~~~~g~~~~-~~~~~  153 (229)
                      .+++++++..|++.. .  +|   +..|.+|++++|+|+||||||||+++++|+..   +.++  .++.+++.. ....+
T Consensus       257 ~~~~~~l~~g~~~ld-~--vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~~vi~~~~ee~~~~l~~~  327 (525)
T 1tf7_A          257 RSSNVRVSSGVVRLD-E--MC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC---ANKERAILFAYEESRAQLLRN  327 (525)
T ss_dssp             CCCCCEECCSCHHHH-H--HT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEESSSCHHHHHHH
T ss_pred             ccccceeecChHHHH-H--Hh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCCCEEEEEEeCCHHHHHHH
Confidence            356666665554311 0  22   45899999999999999999999999999998   7643  245555432 21111


Q ss_pred             -cCCCcccCcchhhhHHHHHHccccc----cCCCCCCCCCCchhhhhhccCCccEEEecCCeeeeccc-----CHHHHHH
Q 027060          154 -RGAPWTFNPLLLLNCLKNLRNQGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSS  223 (229)
Q Consensus       154 -~~~~~~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP-----~~~~l~~  223 (229)
                       ..+..        .+.+....+...    ....++.+..++...+.....++++|++| ++-.||..     .+..+.+
T Consensus       328 ~~~~g~--------~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~  398 (525)
T 1tf7_A          328 AYSWGM--------DFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG  398 (525)
T ss_dssp             HHTTSC--------CHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred             HHHcCC--------CHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence             11111        112212221111    11123445556666666667788899999 88888887     6767666


Q ss_pred             HHh
Q 027060          224 MFD  226 (229)
Q Consensus       224 ~l~  226 (229)
                      ++.
T Consensus       399 ll~  401 (525)
T 1tf7_A          399 VTG  401 (525)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.85  E-value=2.3e-10  Score=104.06  Aligned_cols=61  Identities=16%  Similarity=0.177  Sum_probs=48.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .++++++.+.|+...    +|+++ + ..+|++++|+|||||||||||++|+|+++   |.+|. .+.+.+
T Consensus       143 ~~~l~~Lg~~~~~~~----~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~  204 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHD----NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDP  204 (418)
T ss_dssp             CCCGGGSCCCHHHHH----HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESS
T ss_pred             CCCHHHcCCCHHHHH----HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEeccc
Confidence            456677776665443    67777 5 37899999999999999999999999999   88885 555544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.83  E-value=2.3e-09  Score=85.82  Aligned_cols=67  Identities=25%  Similarity=0.286  Sum_probs=44.5

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh-cCCCcccCcc-hhhhHHHHHHc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR-RGAPWTFNPL-LLLNCLKNLRN  174 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~-~~~~~~~~~~-~~~tv~e~l~~  174 (229)
                      .+++|++++|+|+||||||||+++|++.     +..|. .++|.++...... ..+.+.++.. ...++.+++.+
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   74 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAAD   74 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHH
Confidence            4779999999999999999999999995     35675 7777654322111 1123333322 23677777754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.83  E-value=1.4e-10  Score=97.27  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=40.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      .|+++|+...|+.           ++++.+ ++++|+||||||||||+++|+|++.   |++|. .++|.++
T Consensus         9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~~   65 (227)
T 1qhl_A            9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTTE   65 (227)
T ss_dssp             EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC-------
T ss_pred             EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEEc
Confidence            5888888765532           345555 8999999999999999999999999   99996 7777664

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.83  E-value=2.7e-10  Score=112.39  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+++|++|++.+|++++|+||||||||||||+|+++.
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~  697 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT  697 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence            3789999999999999999999999999999998764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.83  E-value=3.8e-10  Score=97.84  Aligned_cols=109  Identities=22%  Similarity=0.333  Sum_probs=68.0

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-----ceE--ecCC--CHH--HH----------HhhcCCCcccCc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----ASS--FDSQ--DPK--EA----------HARRGAPWTFNP  162 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-----G~~--~~g~--~~~--~~----------~~~~~~~~~~~~  162 (229)
                      -.++.++||+|++|||||||++.|.+++.   +..     +..  .++.  +..  ..          ....+.+..++.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~  104 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDM  104 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHH
Confidence            34788999999999999999999999997   531     112  2221  111  11          011234555555


Q ss_pred             chhhhHHHHHHcc------ccccCCCCCCCC----CCchhhh--hhccCCccEEEecCCeeeecccC
Q 027060          163 LLLLNCLKNLRNQ------GSVYAPSFDHGV----GDPVEDD--ILVGLQHKVVIVDGNYLFLDGGV  217 (229)
Q Consensus       163 ~~~~tv~e~l~~~------~~~~~~~~~~~~----~~~~~~~--l~~~~~~rvLi~d~~~LlLDEP~  217 (229)
                      ..+...++.+..+      .....+.|+...    +++...+  ..+  .++|||+|+.++++|+..
T Consensus       105 ~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          105 KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence            5556666666655      234445565444    6765543  333  789999999999999753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.82  E-value=4.4e-09  Score=89.80  Aligned_cols=30  Identities=37%  Similarity=0.517  Sum_probs=27.8

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.+|++++|+||||||||||++.|++.+.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            477999999999999999999999999776

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.80  E-value=7.7e-09  Score=82.25  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      +++++++.+| +++|+|+||||||||+++|.+++.   +..|.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~   56 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAK   56 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCccc
Confidence            5888999998 999999999999999999999987   66554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.79  E-value=8.2e-11  Score=103.44  Aligned_cols=143  Identities=18%  Similarity=0.147  Sum_probs=81.9

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCC-------cEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCce-EecCCCH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQDP  147 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~G-------e~v~IiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~g~~~  147 (229)
                      .++.++++..|+...    +++++++.|.+|       +.++|+||||+|||||+++|++.+... .+.+|. ...+.++
T Consensus        18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l   93 (334)
T 1in4_A           18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM   93 (334)
T ss_dssp             TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH
T ss_pred             HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHH
Confidence            356678888887654    788999999876       899999999999999999999998200 055564 3333333


Q ss_pred             HHHHh---hcCCCcccCcchh-hhHHHHHHccccccCCC------------------CCCCCCCchhhhhhccCCccEEE
Q 027060          148 KEAHA---RRGAPWTFNPLLL-LNCLKNLRNQGSVYAPS------------------FDHGVGDPVEDDILVGLQHKVVI  205 (229)
Q Consensus       148 ~~~~~---~~~~~~~~~~~~~-~tv~e~l~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~rvLi  205 (229)
                      .....   ...+.+.++...+ .++.+++......+...                  +...........++.+...|+-+
T Consensus        94 ~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l  173 (334)
T 1in4_A           94 AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGI  173 (334)
T ss_dssp             HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSE
T ss_pred             HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCc
Confidence            22211   2234444444333 24566553221111000                  00000011112344445556522


Q ss_pred             ecCCeeeecccCHHHHHHHHhh
Q 027060          206 VDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       206 ~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                          ..-||.++..++.+++..
T Consensus       174 ----~~~Ld~~~~~~l~~iL~~  191 (334)
T 1in4_A          174 ----ILELDFYTVKELKEIIKR  191 (334)
T ss_dssp             ----EEECCCCCHHHHHHHHHH
T ss_pred             ----eeeCCCCCHHHHHHHHHH
Confidence                277899998888888764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.79  E-value=1.2e-09  Score=108.07  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=32.5

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .+++|++|++.+|++++|+||||||||||||+|++
T Consensus       650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred             eecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            47889999999999999999999999999999944

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.76  E-value=4.9e-10  Score=99.42  Aligned_cols=48  Identities=23%  Similarity=0.418  Sum_probs=39.5

Q ss_pred             cccce-eeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCC----ce--EecCCC
Q 027060           96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----AS--SFDSQD  146 (229)
Q Consensus        96 ~l~~i-sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~----G~--~~~g~~  146 (229)
                      .|+.+ .+.|++|++++|+||||||||||++.|++..  +   |+.    |.  ++++++
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSS
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCC
Confidence            45555 6899999999999999999999999999998  4   555    43  677765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.74  E-value=2.7e-09  Score=94.77  Aligned_cols=39  Identities=18%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             ccceeeeecC--CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC
Q 027060           97 TSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK  138 (229)
Q Consensus        97 l~~isl~i~~--Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~  138 (229)
                      .+.|++.|.+  |++++|+|+||||||||+++|+|+++   |++
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~  198 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTS  198 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEE
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCc
Confidence            5679999999  99999999999999999999999999   888

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.74  E-value=7.3e-09  Score=80.96  Aligned_cols=32  Identities=25%  Similarity=0.179  Sum_probs=29.1

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++++     +|+.++|+||||+|||||+++|++.+.
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45555     899999999999999999999999998

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.74  E-value=2.2e-09  Score=85.54  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=32.5

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +|.+.+|+.++|+||||+|||||+++|++.+.   +..|
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g   67 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG   67 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence            56778899999999999999999999999997   6666

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.73  E-value=1.6e-09  Score=100.84  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=43.2

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      +++++++.+.+|+.++|+||||||||||+++|+|+++   |+.|. .+.|.
T Consensus       249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~  296 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDT  296 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESS
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCc
Confidence            5778999999999999999999999999999999999   99997 77665

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.67  E-value=1.1e-08  Score=82.62  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=29.2

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      ++|.+|++++|+||||||||||+++|++++.   |+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence            4678999999999999999999999999986   6544

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.66  E-value=5.9e-09  Score=84.64  Aligned_cols=48  Identities=17%  Similarity=0.117  Sum_probs=36.5

Q ss_pred             eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|++..++...    +.+..++...+|++++|+|+||||||||+++|++.+.
T Consensus         3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A            3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45666665544    6678888899999999999999999999999999985

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.66  E-value=1e-08  Score=83.52  Aligned_cols=28  Identities=39%  Similarity=0.515  Sum_probs=24.0

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++|++++|+||||||||||+++|+|+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5799999999999999999999999874

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.64  E-value=8.6e-09  Score=82.58  Aligned_cols=62  Identities=24%  Similarity=0.245  Sum_probs=38.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC-CcccCcchhhhHHHHHHcc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ  175 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~-~~~~~~~~~~tv~e~l~~~  175 (229)
                      |++++|+||||||||||+++|++      +.+|. .++|.++... ...+. +.........++.+++.+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~   65 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDL   65 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHH
Confidence            68999999999999999999987      35674 7766443221 11222 2211112235677776543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.60  E-value=8.5e-09  Score=89.47  Aligned_cols=43  Identities=21%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee---cCCCH
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQDP  147 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~---~g~~~  147 (229)
                      |++..|++++|+||||||||||+++|+|++.   |++|. .+   +|+++
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~  210 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHT  210 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------C
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCc
Confidence            5667899999999999999999999999999   99997 66   66543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=2.7e-08  Score=80.65  Aligned_cols=37  Identities=35%  Similarity=0.382  Sum_probs=25.8

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++|+||++.+|++++|+|++||||||+.+.|++.+.
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            7899999999999999999999999999999998775

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.57  E-value=7.3e-08  Score=78.29  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=36.2

Q ss_pred             cccceee-eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus        96 ~l~~isl-~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      .|+++.. .+++|++++|+|+||||||||++.|++  .   +..+. ++...
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~   54 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTE   54 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESS
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECC
Confidence            5666665 689999999999999999999999999  4   44555 55544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.56  E-value=2.6e-08  Score=80.98  Aligned_cols=26  Identities=38%  Similarity=0.613  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |++++|+||||||||||+++|+|+++
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc
Confidence            78999999999999999999999985

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.56  E-value=5.5e-08  Score=86.65  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++++++++.+| +++|+||||||||||+++|.++
T Consensus        16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~   49 (359)
T 2o5v_A           16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLA   49 (359)
T ss_dssp             TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence            577999999999 9999999999999999999983

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.50  E-value=3.2e-08  Score=84.71  Aligned_cols=44  Identities=34%  Similarity=0.394  Sum_probs=38.6

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      +++++++.+++|  ++|+||||||||||+++|+|.+.   +  +. .+.|.+
T Consensus        35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~   79 (274)
T 2x8a_A           35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPE   79 (274)
T ss_dssp             HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTT
T ss_pred             HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHH
Confidence            688999999999  99999999999999999999887   5  54 677754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.49  E-value=6.8e-08  Score=77.17  Aligned_cols=27  Identities=15%  Similarity=0.411  Sum_probs=25.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|++++|+||||||||||+++|.++++
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            689999999999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.48  E-value=4.5e-08  Score=85.01  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=32.4

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee---cCCCH
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQDP  147 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~---~g~~~  147 (229)
                      +++..|++++|+||||||||||+|+|+ ++.   |..|. .+   +|++.
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~  205 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHT  205 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------C
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCc
Confidence            456689999999999999999999999 998   99996 66   66543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.48  E-value=7.5e-08  Score=83.39  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP  147 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~  147 (229)
                      +.++++++.|+...      ++++|+  +|++++|+|+||+||||+++.|++.+.   +.+|. .+.+.+.
T Consensus        77 ~~~~~l~~~~~~~~------~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~  136 (295)
T 1ls1_A           77 TVYEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADT  136 (295)
T ss_dssp             HHHHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCS
T ss_pred             HHHHHHHHHHCCCC------ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCc
Confidence            44567788886531      478888  899999999999999999999999998   77775 6666553

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.47  E-value=1.5e-08  Score=88.54  Aligned_cols=42  Identities=19%  Similarity=0.209  Sum_probs=27.0

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee---cCCC
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQD  146 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~---~g~~  146 (229)
                      +++.+|++++|+|+||+|||||+|+|+|++.   +..|. .+   .|+.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~  213 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKH  213 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcc
Confidence            6788999999999999999999999999998   89896 54   5543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.46  E-value=1e-07  Score=77.25  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=25.1

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+...+|++++|+|+||||||||+++|++.+
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3566789999999999999999999999976

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.43  E-value=1.3e-08  Score=85.31  Aligned_cols=48  Identities=27%  Similarity=0.390  Sum_probs=40.0

Q ss_pred             EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++++.+.|+...    +++++++.+++|  ++|+||||+|||||+++|++.+.
T Consensus        27 ~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           27 ELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             HHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence            3456666675543    788999999999  99999999999999999999875

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.43  E-value=1.5e-07  Score=85.17  Aligned_cols=45  Identities=18%  Similarity=0.387  Sum_probs=37.3

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |+++|+ +.|++..         .+++.+|++++|+||||||||||+++|.+++.
T Consensus         7 l~~~~~-~~~~~~~---------~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A            7 LELSNF-KSYRGVT---------KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EEEESC-SSCCSEE---------EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEeCE-EEECCce---------eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            778888 6775421         24567899999999999999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.42  E-value=1.6e-08  Score=86.18  Aligned_cols=48  Identities=27%  Similarity=0.390  Sum_probs=40.2

Q ss_pred             EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++++.+.|+...    +++++++.+++|  ++|+||||+|||||+++|++.+.
T Consensus        51 ~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           51 ELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             HHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence            3456666676543    788999999999  99999999999999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.39  E-value=7e-08  Score=77.25  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=29.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCC
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQD  146 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~  146 (229)
                      ++++|+|+||||||||+++|+|++.   |.   .|. .++|.+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~   42 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHG   42 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcc
Confidence            5899999999999999999999999   87   786 777765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.38  E-value=1e-07  Score=85.40  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=34.6

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++++++.+++|++++|+||||||||||+++|++.+.
T Consensus       158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            6889999999999999999999999999999999654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.37  E-value=8e-08  Score=80.34  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH---HHhcccCCCCce
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS  140 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~---gll~~~~p~~G~  140 (229)
                      ++++++|+|+||||||||+++|+   |+..   ++.|.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~   60 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGH   60 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHH
Confidence            47999999999999999999999   8777   88885

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.36  E-value=2.3e-07  Score=75.87  Aligned_cols=28  Identities=29%  Similarity=0.513  Sum_probs=26.5

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++|++++|+||||||||||++.|++.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            5899999999999999999999999886

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.36  E-value=1.4e-07  Score=76.61  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=33.8

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~  145 (229)
                      ...+|++++|+|+||||||||+++|.+++.   +.+|. .+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~~~~   58 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCVFHM   58 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEEG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEEecc
Confidence            467899999999999999999999999998   77775 44443

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.34  E-value=3e-07  Score=81.81  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=31.6

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++++++++.+| +++|+||||||||||+.+|+..+.
T Consensus        13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al~   48 (365)
T 3qf7_A           13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFALF   48 (365)
T ss_dssp             TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            456888999998 889999999999999999997653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.34  E-value=3.5e-07  Score=75.37  Aligned_cols=41  Identities=12%  Similarity=0.244  Sum_probs=33.6

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCC-----CCce-EecCCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWP-----QKAS-SFDSQD  146 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p-----~~G~-~~~g~~  146 (229)
                      -|++|++++|+||||||||||++.|++.  ++   +     ..|. ++.+.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcCCCCCeEEEEECCC
Confidence            4789999999999999999999999994  43   3     3455 677665

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.33  E-value=1.2e-07  Score=80.04  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=30.4

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHH---HHhcccCCCCce
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS  140 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~---gll~~~~p~~G~  140 (229)
                      .+|++++|+|||||||||++++|+   |+..   +++|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~   60 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGA   60 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCc
Confidence            789999999999999999999999   7777   88886

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.33  E-value=2.2e-07  Score=81.39  Aligned_cols=46  Identities=22%  Similarity=0.183  Sum_probs=40.4

Q ss_pred             cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .+++|.+.+|++++|+|+||+||||++..|++.+.   +.+|. .+.+.+
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D  142 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAAD  142 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCC
Confidence            58899999999999999999999999999999998   77775 555554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.29  E-value=2.6e-08  Score=87.81  Aligned_cols=56  Identities=23%  Similarity=0.229  Sum_probs=47.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +++.+++.+.|+...    +++++++.+.+|.+++|+|+||+|||||++.|++.+.   +.++
T Consensus        30 ~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~   85 (341)
T 2p67_A           30 LVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGL   85 (341)
T ss_dssp             HHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTC
T ss_pred             HhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCC
Confidence            466677777776654    7889999999999999999999999999999999987   5555

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.27  E-value=3.8e-07  Score=85.53  Aligned_cols=42  Identities=29%  Similarity=0.272  Sum_probs=36.7

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc--e-EecCCCH
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--S-SFDSQDP  147 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G--~-~~~g~~~  147 (229)
                      .+.+|++++|+|+||||||||+++|++.+.   +.+|  . .++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECCcHH
Confidence            578999999999999999999999999999   8887  4 4777543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.26  E-value=5.5e-07  Score=70.92  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=25.0

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+|++++|+|+|||||||++++|++.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            468999999999999999999999975

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.25  E-value=2.1e-07  Score=77.25  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=27.5

Q ss_pred             eeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       100 isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -+....+|++++|+|+||||||||+++|+++
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3456679999999999999999999999885

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.25  E-value=1.6e-07  Score=83.55  Aligned_cols=46  Identities=24%  Similarity=0.194  Sum_probs=32.4

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec-CC
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQ  145 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~-g~  145 (229)
                      ++++++. .+|++++|+|+||+|||||+++|+|++..  +..|. .+. |.
T Consensus       206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~  253 (358)
T 2rcn_A          206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGL  253 (358)
T ss_dssp             HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC--------
T ss_pred             HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCC
Confidence            4566664 47999999999999999999999997631  46675 443 44

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.25  E-value=1.5e-06  Score=75.22  Aligned_cols=32  Identities=28%  Similarity=0.256  Sum_probs=29.9

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      .+|++++|+|+||+||||+++.|++.+.   +..|
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G  134 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH  134 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC
Confidence            4799999999999999999999999998   7778

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.23  E-value=4.4e-07  Score=79.06  Aligned_cols=45  Identities=18%  Similarity=0.278  Sum_probs=37.5

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .+++...+|++++|+|+|||||||+++.|++.+.   +.+|. .+.+.+
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D  141 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAAD  141 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccc
Confidence            3566678999999999999999999999999998   77774 554444

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.22  E-value=6.3e-07  Score=70.24  Aligned_cols=27  Identities=41%  Similarity=0.646  Sum_probs=24.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .|++++|+|+||||||||+++|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            468899999999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.22  E-value=3.1e-07  Score=80.18  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh--------cccCCCCce-EecCC
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI--------NKIWPQKAS-SFDSQ  145 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll--------~~~~p~~G~-~~~g~  145 (229)
                      ++++|+|+||||||||+|+|.|+.        .   ++.|. .++|.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~---~d~G~i~idg~   48 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE---NEFGEVSVDDQ   48 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC---SSCCSCCEEEE
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE---ecCcccCccHH
Confidence            589999999999999999999986        5   78885 66654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.21  E-value=2.7e-07  Score=83.67  Aligned_cols=35  Identities=37%  Similarity=0.443  Sum_probs=32.6

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -++++|+++.|++++|+|+||||||||+++|++..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            35899999999999999999999999999999973

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.20  E-value=8.7e-07  Score=72.53  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=26.8

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |+...+|++++|+||||||||||++.|.+.++
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34455899999999999999999999999865

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.18  E-value=8.9e-07  Score=79.69  Aligned_cols=40  Identities=25%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHH------------HhcccCCCCce-EecCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKAS-SFDSQ  145 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~g------------ll~~~~p~~G~-~~~g~  145 (229)
                      .+..|+++||+|+||+|||||+++|+|            .+.   |+.|. .+.|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~~   68 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPDE   68 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECCH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCCc
Confidence            567899999999999999999999999            344   77886 66654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.13  E-value=7.3e-07  Score=80.14  Aligned_cols=53  Identities=21%  Similarity=0.237  Sum_probs=46.5

Q ss_pred             eEEEeeeeEEcCcccccccccc--------------ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~--------------~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.++||+..|+...   ..++              |+.+.|.+|+.++|+|++|+|||||++.|++.+.
T Consensus       133 ri~Fe~ltp~yP~er---~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          133 KILFENLTPLHANSR---LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             SCCTTTSCEESCCSB---CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCc---cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            378899999998643   2566              8999999999999999999999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.12  E-value=2.1e-06  Score=66.79  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=25.7

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +..+++.+| +.+|+|||||||||++.+|.-.+
T Consensus        16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            444555544 99999999999999999998655

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.07  E-value=1.4e-06  Score=70.67  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=28.8

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ++--.+.+|.+++|+|++|||||||++.|.+.+
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            444577899999999999999999999999975

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.06  E-value=4.7e-06  Score=72.61  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH-HhcccCCCCce-EecCCC
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKAS-SFDSQD  146 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g-ll~~~~p~~G~-~~~g~~  146 (229)
                      .+.|.||||+|||||+++|++ ++.   +..|. .++|.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~   74 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQ   74 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC-------
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEeccee
Confidence            389999999999999999999 667   78886 666654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.04  E-value=2.3e-06  Score=68.39  Aligned_cols=24  Identities=38%  Similarity=0.422  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++|+|+||||||||++.++|...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            689999999999999999999765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.03  E-value=1.9e-06  Score=70.45  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      +.+++|+|++||||||++++|++.+....++.|.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~   38 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA   38 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence            5689999999999999999999987311166675

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.03  E-value=4e-07  Score=85.14  Aligned_cols=55  Identities=24%  Similarity=0.358  Sum_probs=45.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      +-++++.+.|....    ++.++++++ +|++++|+||||+|||||+++|++.+.   +..|.
T Consensus        84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~  138 (543)
T 3m6a_A           84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVR  138 (543)
T ss_dssp             SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEE
T ss_pred             ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEE
Confidence            33566777775543    677888888 899999999999999999999999998   76665

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.01  E-value=4.3e-06  Score=69.52  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=27.6

Q ss_pred             cccceeeeec---CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~---~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -|.++++.+.   +|.+++|.|++||||||+++.|...+.
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3566666665   999999999999999999999999998

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.99  E-value=1.7e-06  Score=81.73  Aligned_cols=58  Identities=22%  Similarity=0.317  Sum_probs=47.6

Q ss_pred             eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCC
Q 027060           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQ  145 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~  145 (229)
                      ++++..|+...    +++++++.+..|+.++|+||||+|||||+++|++++.   +.. |. .+.+.
T Consensus        38 ~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~   97 (604)
T 3k1j_A           38 KLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPN   97 (604)
T ss_dssp             SHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECC
T ss_pred             cccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCC
Confidence            45555677654    7889999999999999999999999999999999998   776 44 44443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.96  E-value=4e-06  Score=66.28  Aligned_cols=28  Identities=29%  Similarity=0.306  Sum_probs=25.8

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|++++|+|++||||||++++|.+.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3689999999999999999999999886

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.90  E-value=6.3e-06  Score=67.78  Aligned_cols=48  Identities=15%  Similarity=0.330  Sum_probs=34.3

Q ss_pred             cccce-eeeecCCcEEEEEcCCCCcHHHHHHHH-HHHhcccCCCCce-EecCCC
Q 027060           96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEV-VRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        96 ~l~~i-sl~i~~Ge~v~IiGpNGsGKSTLlk~L-~gll~~~~p~~G~-~~~g~~  146 (229)
                      .|+.+ .--+++|++++|+|+||+|||||+..+ .+..+   ...+. ++....
T Consensus        11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~   61 (247)
T 2dr3_A           11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE   61 (247)
T ss_dssp             THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred             hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence            45555 567899999999999999999996544 55555   44444 555543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.90  E-value=5.2e-06  Score=73.37  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=28.9

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ..+.+++|+|++|||||||++.|+|.+.   +.+|.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~  104 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHK  104 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCe
Confidence            3578999999999999999999999987   66663

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.88  E-value=3.5e-06  Score=78.11  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++++++++.+| +.+|+|+||||||||+.+|..++
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll   84 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL   84 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence            466889999999 99999999999999999998873

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.87  E-value=6.3e-06  Score=74.31  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHH--HHhcccCCCC----c-e-EecCCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQK----A-S-SFDSQD  146 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~--gll~~~~p~~----G-~-~~~g~~  146 (229)
                      -|++|++++|+||||||||||++.|+  ++++   ++.    | . ++++++
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSS
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccCCCCCcEEEEeCCC
Confidence            58899999999999999999999554  4444   422    2 4 677764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.85  E-value=1.9e-06  Score=75.31  Aligned_cols=51  Identities=25%  Similarity=0.444  Sum_probs=41.5

Q ss_pred             eeeEEcCccccccccccceeeeecCCcE--EEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           82 CMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~--v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +++..|+...    +++.++..|..|++  +.|.||+|+||||+++++++.+.   +..+
T Consensus        23 ~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~   75 (340)
T 1sxj_C           23 TLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNY   75 (340)
T ss_dssp             SGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSH
T ss_pred             cHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCc
Confidence            3444555543    67788899999998  99999999999999999999987   5544

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.84  E-value=1.3e-05  Score=65.41  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=26.4

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.++++.+ .+.+|+|||||||||++.+|.-.+.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            44555555 4999999999999999999976664

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.83  E-value=9.4e-06  Score=64.96  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+||||||||++.|+|..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999999974

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.82  E-value=1e-05  Score=64.50  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=26.8

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ++|+...+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888999999999999999999999999886

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.82  E-value=6e-06  Score=67.21  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +.+.+|.+++|+|++||||||+.+.|.+.+.   |..|
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g   54 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR   54 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence            5577899999999999999999999999987   6777

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.81  E-value=8.5e-06  Score=65.75  Aligned_cols=21  Identities=48%  Similarity=0.705  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +++|+|+|||||||+.++|++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999988

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.81  E-value=1e-05  Score=65.41  Aligned_cols=30  Identities=27%  Similarity=0.434  Sum_probs=26.5

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...+|.+++|+||+|||||||.+.|...++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            456899999999999999999999998764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.81  E-value=1.2e-05  Score=70.47  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=23.7

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +..+++.+ .+.+|+||||||||||+.+|..
T Consensus        16 ~~~i~f~~-~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEcCCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            34455555 4889999999999999998754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.80  E-value=2e-06  Score=79.69  Aligned_cols=47  Identities=26%  Similarity=0.373  Sum_probs=37.9

Q ss_pred             EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++++...|.+..    +++++++.+++|  +.|+||||+|||||+++|++...
T Consensus        43 l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           43 LKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             HHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence            344544554433    678999999999  99999999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.78  E-value=1.1e-05  Score=64.83  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +++|+|+|||||||++++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999999

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.74  E-value=1.5e-05  Score=63.26  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      .+...+|.+++|+|++||||||+.+.|+..+.   ..++
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~---~~~~   42 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ---KEGY   42 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCC
Confidence            34556899999999999999999999999987   5554

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.74  E-value=1.8e-05  Score=71.82  Aligned_cols=55  Identities=20%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      +++++.|+...      ++++|+  ++++++|+|+||+||||++..|++.+.   +.++. .+.+.+
T Consensus        80 ~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D  135 (425)
T 2ffh_A           80 EALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAAD  135 (425)
T ss_dssp             HHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECC
T ss_pred             HHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeecc
Confidence            45777786532      477777  899999999999999999999999998   77664 554444

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.72  E-value=1.2e-05  Score=69.59  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=43.7

Q ss_pred             EeeeeEEcCccccccccccc-eeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060           80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus        80 ~~~ls~~y~~~~~~~~~l~~-isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .+++.+.|++..      ++ ++++++ |.+++++|+||+||||++..|++.+.   +.++. .+.+.+
T Consensus        77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D  135 (297)
T 1j8m_F           77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGAD  135 (297)
T ss_dssp             HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred             HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence            355667776532      36 788876 99999999999999999999999998   76664 444443

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.71  E-value=2e-05  Score=65.90  Aligned_cols=27  Identities=26%  Similarity=0.592  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .--+++|.|+.||||||+.+.|...+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345799999999999999999988654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.66  E-value=1.9e-05  Score=61.86  Aligned_cols=26  Identities=38%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +|..++|+|++|+|||||++.|++..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.65  E-value=2.7e-05  Score=62.64  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+++|+|++||||||+.+.|++.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999998764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.65  E-value=2e-05  Score=69.46  Aligned_cols=45  Identities=13%  Similarity=0.171  Sum_probs=31.4

Q ss_pred             eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +++.+.|+... ...+|++++++++   .++|+|++|||||||++.|+|
T Consensus        12 ~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           12 QRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             TTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHT
T ss_pred             HHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhC
Confidence            34555555321 1126889999998   999999999999999999999

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.61  E-value=5e-06  Score=73.77  Aligned_cols=45  Identities=18%  Similarity=0.150  Sum_probs=35.3

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+.+.++.+.|+.+.    ++++++|.|      +|+|++|+|||||++.|.+..
T Consensus        17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred             eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence            488899998887654    678888876      999999999999999997753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.60  E-value=4.1e-05  Score=63.33  Aligned_cols=29  Identities=24%  Similarity=0.405  Sum_probs=25.4

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -.+|.+++|+|++||||||+.++|++.+.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45789999999999999999999998653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.60  E-value=7.5e-05  Score=66.00  Aligned_cols=40  Identities=20%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e-EecCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQ  145 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~g~  145 (229)
                      -+++|+++.|.|+||+|||||+..++....   ...+ . +++..
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E   98 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAE   98 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESS
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECC
Confidence            577999999999999999999888887655   3444 3 55543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.60  E-value=3.5e-05  Score=60.84  Aligned_cols=28  Identities=39%  Similarity=0.684  Sum_probs=24.0

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|.+++|+|++||||||+.+.|+..+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3678999999999999999999986543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.58  E-value=3.6e-05  Score=68.31  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--EecCCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQD  146 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~g~~  146 (229)
                      -+++|+++.|.||||||||||+..++....   +..|.  ++++..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~   99 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEH   99 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccc
Confidence            477999999999999999999999999887   66663  666654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.56  E-value=2.2e-05  Score=67.74  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ++.+++|+|++|+|||||++.|.|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            45589999999999999999999963

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.54  E-value=4.4e-05  Score=60.70  Aligned_cols=33  Identities=21%  Similarity=0.104  Sum_probs=20.7

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +++++++..+.. .++|+|++|+|||||++.+.+
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            567888887766 789999999999999999998

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.50  E-value=5.3e-05  Score=63.19  Aligned_cols=34  Identities=29%  Similarity=0.513  Sum_probs=24.9

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++++++.++.|  +.|.||+|+|||||++.|++.+.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            34555555555  88999999999999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.49  E-value=6.9e-05  Score=58.02  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|+|++||||||+.+.|+..+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            789999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.48  E-value=4.6e-05  Score=59.02  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|++|+|||||++.++|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999854

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.45  E-value=7.6e-05  Score=59.58  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -.+++|+|++|||||||++.|.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            35899999999999999999999876

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.44  E-value=1.6e-05  Score=63.81  Aligned_cols=42  Identities=21%  Similarity=0.195  Sum_probs=29.4

Q ss_pred             eEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           84 DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        84 s~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      ++.|++..   .+++++++..++. .++|+|++|+|||||++.+.+
T Consensus         6 ~~~~~~~~---~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSGFS---SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             -------C---HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHH---HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            34555542   1678888888776 579999999999999999976

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.41  E-value=5.7e-05  Score=63.30  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ....+.++.|+|++||||||+.+.|...+.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            566789999999999999999999999764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.40  E-value=8.5e-05  Score=65.86  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=26.4

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +++..+++.+ .+.+|+|+|||||||++..|.=
T Consensus        16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            3456666666 4999999999999999999974

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.38  E-value=8.1e-05  Score=58.33  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|++|+|||||++.|++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999984

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.37  E-value=0.00013  Score=57.08  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.++.|+|++||||||+.+.|...+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999999998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.34  E-value=0.00014  Score=57.15  Aligned_cols=26  Identities=23%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |.++.|.|++||||||+.+.|...+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999998765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.34  E-value=9.1e-05  Score=66.65  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.9

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .+..+..++|+|+||+|||||++.|+|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4567889999999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.33  E-value=0.00013  Score=57.58  Aligned_cols=28  Identities=21%  Similarity=0.475  Sum_probs=24.6

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+.++.|+|++||||||+.+.|...+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4678999999999999999999987654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.33  E-value=0.00014  Score=57.89  Aligned_cols=24  Identities=38%  Similarity=0.708  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|+|++||||||+.+.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.33  E-value=0.00013  Score=59.20  Aligned_cols=24  Identities=42%  Similarity=0.601  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .+.+++|.|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999987

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.30  E-value=0.00013  Score=56.20  Aligned_cols=20  Identities=35%  Similarity=0.670  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEV  127 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L  127 (229)
                      .+++|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999999

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.28  E-value=0.00015  Score=60.87  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|+||+|||||||.+.|+..+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            689999999999999999998764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.28  E-value=0.00016  Score=60.51  Aligned_cols=27  Identities=30%  Similarity=0.609  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..-+++|.||+||||||+.+.|+..+.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345899999999999999999997664

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.28  E-value=0.00014  Score=57.03  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.|+|++||||||+.+.|+..+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.28  E-value=9.4e-05  Score=58.27  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999853

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.25  E-value=7.8e-05  Score=60.01  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|.|++||||||+++.|...+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999886

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.24  E-value=0.00019  Score=57.20  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=24.2

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+|.+++|.|+.||||||+.+.|...+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999998865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.24  E-value=0.00015  Score=57.02  Aligned_cols=28  Identities=32%  Similarity=0.506  Sum_probs=24.5

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+.++.|+|++||||||+.+.|+..+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4678899999999999999999987653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.21  E-value=0.00018  Score=70.39  Aligned_cols=40  Identities=28%  Similarity=0.361  Sum_probs=33.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLl  124 (229)
                      ..|+|++..    ..     -|+||+++|+.|.+++|.|.+|||||||.
T Consensus        14 ~~I~i~gar----~h-----NLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           14 GFVQVRGAR----QH-----NLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             TEEEEEEEC----ST-----TCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             CeEEEeecc----cc-----CCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            357777663    11     48899999999999999999999999998

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.21  E-value=0.00024  Score=56.74  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.+++|.|+.||||||+.+.|...+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            477899999999999999999999776

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.20  E-value=0.00025  Score=56.07  Aligned_cols=28  Identities=29%  Similarity=0.568  Sum_probs=24.8

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++.+++|+|+.||||||+.+.|+..+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678999999999999999999987654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.19  E-value=0.00021  Score=56.85  Aligned_cols=24  Identities=42%  Similarity=0.576  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ..+++|+|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.17  E-value=0.00027  Score=55.57  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999988664

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.17  E-value=0.00019  Score=59.15  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++|+|++|+|||||++.|+|...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc
Confidence            589999999999999999999654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.16  E-value=0.0002  Score=68.36  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=27.1

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.+.++..++|+|++|+|||||++.|++...
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~   34 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG   34 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence            45678899999999999999999999998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.16  E-value=0.00023  Score=55.39  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++.|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999987

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.16  E-value=0.00022  Score=61.25  Aligned_cols=31  Identities=29%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.+.++..+.|.||+|+|||||++.|++.+.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4567889999999999999999999999764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.15  E-value=0.00028  Score=55.49  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.+++|+|++||||||+.+.|+..+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999987553

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.15  E-value=0.00029  Score=56.55  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|.+++|.|+.||||||+.+.|...+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999987653

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.14  E-value=0.00027  Score=56.22  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++|+|++|||||||+..|...+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4799999999999999999999875

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.13  E-value=0.00013  Score=66.46  Aligned_cols=42  Identities=14%  Similarity=0.324  Sum_probs=36.7

Q ss_pred             ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus        95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      ..|+++..-+.+|+++.|.|++|+|||||+..|++...   +..|
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g  232 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN  232 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC
Confidence            36788887899999999999999999999999999876   5445

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.13  E-value=0.00029  Score=56.26  Aligned_cols=24  Identities=38%  Similarity=0.667  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|.|++||||||+.+.|+..+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            899999999999999999999764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.12  E-value=0.00013  Score=57.89  Aligned_cols=30  Identities=27%  Similarity=0.505  Sum_probs=25.7

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+..+.+++|+|+.||||||+.+.|+..+.
T Consensus         8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A            8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345678999999999999999999988654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.11  E-value=0.00033  Score=56.21  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=25.2

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+|.+++|.|+.||||||+.+.|...+.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999998654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.10  E-value=0.00024  Score=55.63  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.++.|.|++||||||+.+.|...+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            567899999999999999999987654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.10  E-value=0.00028  Score=56.90  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.|+||+|||||||++.|....+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999987653

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.09  E-value=0.00038  Score=61.81  Aligned_cols=32  Identities=28%  Similarity=0.239  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      .+..++|+|++|||||||++.|.+...   ...+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~   65 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSR   65 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCE
Confidence            567899999999999999999999876   55553

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.06  E-value=0.00024  Score=59.91  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|++|||||||++.|+|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999964

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.04  E-value=0.00034  Score=59.89  Aligned_cols=28  Identities=29%  Similarity=0.527  Sum_probs=24.4

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ...+.++.|+||+||||||+.+.|...+
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3457899999999999999999998755

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.04  E-value=0.00046  Score=56.06  Aligned_cols=27  Identities=41%  Similarity=0.596  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.+++|+|+.||||||+.+.|+..+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            577899999999999999999988664

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.04  E-value=0.00037  Score=54.73  Aligned_cols=24  Identities=42%  Similarity=0.560  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.|.|++||||||+.+.|...+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998775

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.02  E-value=0.00025  Score=65.20  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=30.5

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++++++.+++|  +.|+||+|+|||||++.|++...
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence            466778888877  88999999999999999999765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.00  E-value=0.0003  Score=63.71  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+||+|||||++.|+|..
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            79999999999999999999974

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.00  E-value=0.00037  Score=69.00  Aligned_cols=29  Identities=31%  Similarity=0.455  Sum_probs=27.7

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl  124 (229)
                      -|+||+++|+++++++|.|.+|||||||.
T Consensus        33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            48899999999999999999999999996

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.98  E-value=0.00057  Score=54.64  Aligned_cols=27  Identities=41%  Similarity=0.636  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.+++|+|+.||||||+.+.|+..+.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            567899999999999999999988654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.95  E-value=0.0003  Score=62.39  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             CcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHI-VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~-v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |-. ++|+|++|||||||++.|+|...
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence            444 99999999999999999998653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.95  E-value=0.00039  Score=63.21  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      ++.+++++|+||+||||++..|+..+.   +.++.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~k  127 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYK  127 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCe
Confidence            588999999999999999999999998   66553

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.94  E-value=0.0005  Score=56.22  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=23.1

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++.+++|+|+.||||||+.+.|+..+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3567899999999999999999987553

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.93  E-value=0.00034  Score=69.12  Aligned_cols=29  Identities=28%  Similarity=0.476  Sum_probs=27.8

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl  124 (229)
                      -|+||+++|+++++++|.|.+|||||||.
T Consensus        13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           13 NLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            58899999999999999999999999997

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.00057  Score=53.68  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .-.++|+|+.|+|||||++.|.+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3479999999999999999999854

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.90  E-value=0.00064  Score=57.75  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=26.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      ..+.|.||+|+|||||++.|++.+.   ...+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~---~~~~   76 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF---DTEE   76 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH---SCGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc---CCCc
Confidence            5899999999999999999999987   6555

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.89  E-value=0.00055  Score=55.71  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.++.|+|++||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999988664

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.89  E-value=0.00039  Score=57.29  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=23.2

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .+..|+.++|+||+||||||++.++..
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            456799999999999999999887754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.89  E-value=0.00065  Score=53.28  Aligned_cols=26  Identities=38%  Similarity=0.641  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+++|.|+.||||||+.+.|+..+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999987653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.88  E-value=0.00064  Score=54.86  Aligned_cols=24  Identities=38%  Similarity=0.638  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|.|+.||||||+.+.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999977554

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.88  E-value=0.00067  Score=53.36  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|.|+.||||||+.+.|...+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998763

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.87  E-value=0.00053  Score=63.60  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=28.3

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .+.+++.++..+.|+|.+||||||+++.|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            4678889999999999999999999999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.85  E-value=0.00072  Score=53.99  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=23.1

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ....+++|.|+.||||||+.+.|+..+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            345689999999999999999998654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.85  E-value=0.00058  Score=53.70  Aligned_cols=25  Identities=32%  Similarity=0.562  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++|+|+.||||||+.+.|+..+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999988654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.85  E-value=0.00061  Score=52.79  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++|.|+.||||||+.+.|...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999988654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.84  E-value=0.0007  Score=51.46  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998853

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.83  E-value=0.00083  Score=52.04  Aligned_cols=25  Identities=36%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++++|.|+.||||||+.+.|+..+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999988664

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.83  E-value=0.00083  Score=51.81  Aligned_cols=24  Identities=33%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|.|+.||||||+.+.|...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999988654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.82  E-value=0.00078  Score=50.91  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998853

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.80  E-value=0.00073  Score=50.96  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.80  E-value=0.00081  Score=50.83  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.80  E-value=0.00096  Score=58.12  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             CCc--EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge--~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.  .+.|.||+|+|||||++.+.+.+.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            456  899999999999999999999987

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.80  E-value=0.00076  Score=54.46  Aligned_cols=24  Identities=38%  Similarity=0.573  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|+|+.||||||+.+.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999976543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.78  E-value=0.00084  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998743

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.78  E-value=0.00057  Score=58.12  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|++|+|||||++.|+|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999853

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.78  E-value=0.00078  Score=56.53  Aligned_cols=27  Identities=30%  Similarity=0.523  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.++.|+|++||||||+.+.|...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.78  E-value=0.00098  Score=53.86  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+..+.|.||+|+|||||++.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999998775

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.77  E-value=0.00088  Score=50.99  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998854

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.77  E-value=0.00089  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999875

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.76  E-value=0.0011  Score=58.81  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      |..++|+|.+|+|||||++.|++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            45799999999999999999999

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.76  E-value=0.00076  Score=58.47  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=25.4

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+..+.|.||+|+|||||++.+++.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4577899999999999999999999886

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.75  E-value=0.0009  Score=51.51  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998853

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.75  E-value=0.00091  Score=51.50  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.74  E-value=0.00094  Score=50.66  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.73  E-value=0.00095  Score=50.69  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.73  E-value=0.0011  Score=55.17  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=23.9

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++-+++|.|+.||||||+.+.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.73  E-value=0.0008  Score=51.23  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999873

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.72  E-value=0.00098  Score=51.25  Aligned_cols=22  Identities=41%  Similarity=0.454  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.72  E-value=0.00089  Score=50.95  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            48999999999999999998743

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.72  E-value=0.00058  Score=58.62  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++-++||.|++||||||+.+.|...+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999988653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.71  E-value=0.00075  Score=51.75  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            58999999999999999998743

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.71  E-value=0.00098  Score=58.44  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=26.7

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -+++|+++.|.|++|+|||||+..|+...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999998863

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.71  E-value=0.00092  Score=51.41  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999885

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.68  E-value=0.0011  Score=51.86  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++|+|+.|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            589999999999999999998643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.68  E-value=0.0011  Score=53.87  Aligned_cols=27  Identities=33%  Similarity=0.486  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.++.|+|+.||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            466899999999999999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.67  E-value=0.0011  Score=50.30  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.67  E-value=0.0011  Score=51.75  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|+.|+|||||++.|.+-
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999986

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.67  E-value=0.0013  Score=55.75  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++..+.|.||+|+|||||++.|++...
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            567899999999999999999999764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.66  E-value=0.0011  Score=52.03  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998843

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.66  E-value=0.00085  Score=51.21  Aligned_cols=22  Identities=45%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999999753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.66  E-value=0.0012  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.|.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998743

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.66  E-value=0.0011  Score=51.43  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.65  E-value=0.0012  Score=53.97  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|.|++||||||+.+.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999987553

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.64  E-value=0.00061  Score=51.90  Aligned_cols=22  Identities=45%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            5899999999999999999764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.63  E-value=0.00061  Score=53.42  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|++|+|||||++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346999999999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.63  E-value=0.00084  Score=52.40  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            479999999999999999998853

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.62  E-value=0.00084  Score=52.66  Aligned_cols=25  Identities=28%  Similarity=0.427  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .--.++|+|+.|+|||||++.|.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457999999999999999999874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.61  E-value=0.0013  Score=53.06  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ..++||+|..||||||+.+.|...+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.61  E-value=0.0014  Score=49.89  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346999999999999999999773

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.60  E-value=0.0013  Score=49.82  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.60  E-value=0.0013  Score=50.81  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            358999999999999999998743

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.60  E-value=0.0013  Score=50.40  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998854

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.59  E-value=0.0013  Score=50.55  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.58  E-value=0.0014  Score=51.32  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|..|+|||||++.|.+-.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            68999999999999999998753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.58  E-value=0.0014  Score=53.98  Aligned_cols=32  Identities=22%  Similarity=0.490  Sum_probs=26.6

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +-.+.+..++.|+||.||||+|..+.|+..+.
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34456778999999999999999999988664

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.58  E-value=0.0014  Score=51.60  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|++|+|||||++.+.+-
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999877664

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.58  E-value=0.0016  Score=51.87  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=23.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+.|.||+|+|||||++.|+..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999886

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.58  E-value=0.0014  Score=50.50  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998743

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.57  E-value=0.00081  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.|.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.55  E-value=0.0019  Score=49.79  Aligned_cols=28  Identities=32%  Similarity=0.521  Sum_probs=24.1

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+..+.|.||.|+|||||++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999998774

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.55  E-value=0.0013  Score=50.58  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.54  E-value=0.0016  Score=50.27  Aligned_cols=22  Identities=41%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999885

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.54  E-value=0.0013  Score=54.57  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=22.8

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+|.++.|.|+.||||||+++.|...+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999988775

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.54  E-value=0.00097  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47999999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.53  E-value=0.002  Score=52.91  Aligned_cols=27  Identities=37%  Similarity=0.523  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.++.|+|+.||||||+.+.|+..+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999987654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.53  E-value=0.0013  Score=58.59  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|++|+|||||++.|++..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999974

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.52  E-value=0.0015  Score=52.80  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++|.|+.||||||+.+.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999987553

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.52  E-value=0.0016  Score=51.56  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998854

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.52  E-value=0.00058  Score=54.70  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|.||+|+|||||++.++..+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999998775

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.52  E-value=0.0014  Score=55.80  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      ...+++|.|+.||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999984

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.52  E-value=0.0015  Score=52.82  Aligned_cols=26  Identities=38%  Similarity=0.595  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.+++|+|+.||||||+.+.|+..+.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46799999999999999999988653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.51  E-value=0.00095  Score=58.66  Aligned_cols=26  Identities=35%  Similarity=0.373  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ..-.++|+|+||+|||||++.|+|..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998854

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.51  E-value=0.0015  Score=50.73  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.51  E-value=0.0016  Score=52.28  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|+.|+|||||++.|.+..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999999865

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.51  E-value=0.0016  Score=50.43  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.50  E-value=0.0012  Score=56.81  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +++|+|.+|+|||||++.|.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.50  E-value=0.0015  Score=51.00  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999885

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.50  E-value=0.0016  Score=50.90  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999999843

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.50  E-value=0.0016  Score=51.33  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998743

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.49  E-value=0.0012  Score=55.52  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|..|||||||++.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999963

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.48  E-value=0.0017  Score=50.85  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998854

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.48  E-value=0.0017  Score=56.33  Aligned_cols=29  Identities=17%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            57899999999999999999999998764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.48  E-value=0.002  Score=52.83  Aligned_cols=28  Identities=39%  Similarity=0.510  Sum_probs=25.2

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|.++.|.|+.||||||+++.|...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999998776

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.47  E-value=0.0018  Score=50.05  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.46  E-value=0.0017  Score=51.19  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.46  E-value=0.0018  Score=51.38  Aligned_cols=22  Identities=45%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|.+|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5999999999999999999874

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.46  E-value=0.0017  Score=50.97  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            36999999999999999999884

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.44  E-value=0.0014  Score=56.49  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -+++|+|..|+|||||++.|.|.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            47999999999999999999985

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.44  E-value=0.0022  Score=49.44  Aligned_cols=24  Identities=17%  Similarity=0.069  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            346999999999999999999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.44  E-value=0.001  Score=57.32  Aligned_cols=35  Identities=20%  Similarity=0.434  Sum_probs=26.4

Q ss_pred             cceeeeecCC--cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           98 SALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        98 ~~isl~i~~G--e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.+...+..|  ..+.|.||+|+|||||++.|++.+.
T Consensus        47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3444444444  3389999999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.43  E-value=0.0017  Score=52.20  Aligned_cols=26  Identities=31%  Similarity=0.532  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      --+++|+|+.|+|||||++.|++...
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34799999999999999999988754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.43  E-value=0.0018  Score=50.14  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999853

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.43  E-value=0.0022  Score=53.80  Aligned_cols=29  Identities=38%  Similarity=0.576  Sum_probs=25.5

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +..+.-+.|.||+|+|||||++.|+..+.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45677799999999999999999998765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.42  E-value=0.0011  Score=51.41  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +.-.++|+|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            455799999999999999999874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.42  E-value=0.0018  Score=51.42  Aligned_cols=26  Identities=27%  Similarity=0.221  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34469999999999999999999854

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.42  E-value=0.0018  Score=50.88  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            58999999999999999999865

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.41  E-value=0.0022  Score=53.54  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.++.|.|++||||||+++.|...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999998775

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.41  E-value=0.0019  Score=56.81  Aligned_cols=25  Identities=32%  Similarity=0.721  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999998764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.41  E-value=0.0015  Score=54.36  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|+.|+|||||++.|.|..
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            469999999999999999998853

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.41  E-value=0.0021  Score=50.35  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.40  E-value=0.0021  Score=50.53  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998743

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.38  E-value=0.0021  Score=50.47  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998853

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.38  E-value=0.0022  Score=50.07  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998853

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.37  E-value=0.0017  Score=54.57  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|.+|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999853

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.36  E-value=0.0022  Score=50.30  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998743

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.36  E-value=0.0019  Score=54.73  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++.|+|++||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999873

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.36  E-value=0.0023  Score=52.45  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.++.|-|+.||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999998875

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.36  E-value=0.002  Score=51.67  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999988743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.34  E-value=0.0019  Score=55.48  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +..+.|.||+|+|||||++.|+..+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            46789999999999999999999885

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.34  E-value=0.0023  Score=50.41  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346999999999999999999885

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.34  E-value=0.0023  Score=50.65  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            34568999999999999999998743

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.33  E-value=0.0024  Score=58.52  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=30.4

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++.+ +.+.+|+.++|+|++|+|||||++.|.....
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            44444 6777999999999999999999999988765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.32  E-value=0.003  Score=54.99  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .+++..+.+ .|.-++|+|++|+|||||...|.+
T Consensus       134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            677887888 688999999999999999999887

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.32  E-value=0.0022  Score=50.93  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998843

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.31  E-value=0.0024  Score=50.71  Aligned_cols=25  Identities=32%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .-.++|+|+.|+|||||++.+.+-.
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            4468999999999999999998743

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.31  E-value=0.0018  Score=54.86  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|..|||||||++.|+|..
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999854

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.31  E-value=0.0018  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|+.|+|||||++.+.+-
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999874

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.31  E-value=0.0017  Score=50.60  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4457999999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.31  E-value=0.002  Score=50.94  Aligned_cols=23  Identities=13%  Similarity=0.197  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.30  E-value=0.0036  Score=51.16  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=27.3

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++..-+.+ .|..+.|+||+|+|||||...|+..
T Consensus        24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            455655555 4788999999999999999888764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.29  E-value=0.0025  Score=52.47  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.+++|.|..||||||+++.|...++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.29  E-value=0.0011  Score=52.67  Aligned_cols=22  Identities=45%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|++|+|||||++.+.+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.28  E-value=0.0031  Score=51.91  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=26.1

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|.++.|.|+.||||||+++.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999999999887

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.27  E-value=0.0027  Score=49.86  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            36899999999999999988874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.27  E-value=0.0025  Score=49.20  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+..+.|.||.|+|||||++.++..+.
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999998875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.26  E-value=0.0024  Score=51.26  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999999853

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.26  E-value=0.0025  Score=50.85  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=23.7

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ++.|.-...-.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             --CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            34333333347999999999999999999884

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.26  E-value=0.0021  Score=50.27  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345699999999999999999985

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.24  E-value=0.0028  Score=50.63  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998743

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.23  E-value=0.002  Score=54.95  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|..|+|||||++.|+|.
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCC
Confidence            37999999999999999999985

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.23  E-value=0.0031  Score=51.37  Aligned_cols=24  Identities=42%  Similarity=0.707  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.|+||+||||+|..+.|+..+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            688999999999999999988664

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.23  E-value=0.0036  Score=51.56  Aligned_cols=28  Identities=39%  Similarity=0.557  Sum_probs=24.0

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ....-+.|.||+|+|||||++.|+..+.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3455688999999999999999999765

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.21  E-value=0.002  Score=55.78  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=31.6

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a   93 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS   93 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5677776689999999999999999999988876543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.20  E-value=0.001  Score=55.49  Aligned_cols=32  Identities=38%  Similarity=0.593  Sum_probs=25.5

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.+....|  +.|.||+|+|||||++.|+....
T Consensus        38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence            344444555  78999999999999999999764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.20  E-value=0.001  Score=53.50  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .-.++|+|..|+|||||++.|.+..
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4479999999999999999998853

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.20  E-value=0.0024  Score=57.42  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +.-....++.|+|++||||||+.+.|+..+
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            344567899999999999999999987543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.20  E-value=0.0021  Score=51.13  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.19  E-value=0.0019  Score=50.22  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.19  E-value=0.0036  Score=51.78  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=25.7

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|.++.|.|+.||||||+.+.|...+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4789999999999999999999998776

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.18  E-value=0.003  Score=55.16  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++.|+||+|||||||.+.|+..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4799999999999999999998654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.17  E-value=0.0029  Score=50.22  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999884

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.16  E-value=0.0017  Score=54.75  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|.+|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998663

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.14  E-value=0.002  Score=50.57  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|..|+|||||++.+.+-
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999874

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.13  E-value=0.0029  Score=57.31  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +..+.|.||+|+|||||+++|++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.13  E-value=0.0026  Score=50.92  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.0033  Score=49.33  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.13  E-value=0.0015  Score=51.21  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.13  E-value=0.0031  Score=50.85  Aligned_cols=26  Identities=19%  Similarity=0.410  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      --+++|+|..|+|||||++.++....
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            35789999999999999999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.13  E-value=0.0019  Score=50.05  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=9.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.12  E-value=0.0023  Score=52.03  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+.|+|||||++.+.+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346999999999999999999874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.12  E-value=0.002  Score=50.86  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.11  E-value=0.0031  Score=54.30  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=25.5

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -+++|+++.|.|++|+|||||+..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999988864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.08  E-value=0.0026  Score=50.27  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|..|+|||||++.+.+..
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            469999999999999999888743

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.08  E-value=0.0028  Score=49.99  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3446999999999999999998754

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.05  E-value=0.0044  Score=50.47  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=22.9

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      =+++|+++.|.|++|+|||||+--++
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999999999986554

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.04  E-value=0.0027  Score=51.03  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.04  E-value=0.0038  Score=49.69  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            5899999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.03  E-value=0.0039  Score=54.85  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.++.|+||.|||||||...|+..+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            456899999999999999999987553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.03  E-value=0.0028  Score=57.49  Aligned_cols=31  Identities=39%  Similarity=0.564  Sum_probs=26.0

Q ss_pred             eeecCC--cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          102 SNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       102 l~i~~G--e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |.+.++  .+++|+|++|+||||++..|++.+.
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444434  5899999999999999999999876

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.02  E-value=0.0027  Score=53.52  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|..|+|||||++.|.|..
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            479999999999999999999853

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.01  E-value=0.0043  Score=54.13  Aligned_cols=26  Identities=27%  Similarity=0.661  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.+++|+||+|||||||...|+..+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            45899999999999999999987543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.98  E-value=0.0041  Score=49.60  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999998863

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.97  E-value=0.0033  Score=52.58  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.++|+|..|+|||||++.|.|..
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999999854

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.95  E-value=0.0021  Score=53.68  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=24.2

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++.+|+|.|+.||||||+.+.|...+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4678999999999999999999987653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.0047  Score=49.88  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998853

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.92  E-value=0.0036  Score=50.91  Aligned_cols=22  Identities=45%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|.+|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5999999999999999999863

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.92  E-value=0.0049  Score=49.66  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            346999999999999999999874

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.91  E-value=0.0056  Score=49.74  Aligned_cols=26  Identities=35%  Similarity=0.667  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |.+|+|=|.-||||||+++.|...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999998875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.89  E-value=0.0037  Score=52.50  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++++|..|+|||||++.|.|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.88  E-value=0.0037  Score=52.74  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ..++|+|.+|+|||||++.|.|..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            589999999999999999999854

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.85  E-value=0.0039  Score=54.78  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .|+.+.--+.+|+++.|.|++|+|||||+..|+....
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a   71 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL   71 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4666666789999999999999999999999888765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.85  E-value=0.005  Score=49.01  Aligned_cols=23  Identities=13%  Similarity=0.056  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999874

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.81  E-value=0.0019  Score=50.93  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=4.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36999999999999999998875

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.81  E-value=0.0067  Score=53.58  Aligned_cols=29  Identities=31%  Similarity=0.558  Sum_probs=26.2

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|.++.|.|++|+|||||...++....
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~   88 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ   88 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999988887654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.81  E-value=0.0063  Score=53.38  Aligned_cols=27  Identities=37%  Similarity=0.537  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..-+++|+|+.|+|||||++.|++.+.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.80  E-value=0.0059  Score=55.57  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.+++++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999887

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.78  E-value=0.0068  Score=51.28  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+..+.|.||+|+|||||.+.|+..+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999998774

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.78  E-value=0.006  Score=48.07  Aligned_cols=24  Identities=33%  Similarity=0.632  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|.||.|+|||||++.++..+.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~   63 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLF   63 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            389999999999999999988753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.75  E-value=0.0017  Score=52.00  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.|.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998853

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.75  E-value=0.007  Score=52.68  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+++|+||+|||||||...|+..+.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC
Confidence            45799999999999999999987653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.72  E-value=0.0052  Score=53.20  Aligned_cols=28  Identities=32%  Similarity=0.426  Sum_probs=24.8

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+..+.|.||+|+|||||++.+...+.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999998774

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.71  E-value=0.0044  Score=60.17  Aligned_cols=30  Identities=23%  Similarity=0.261  Sum_probs=26.0

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+..|+.+.|+||+||||||++.++.+...
T Consensus       105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~  134 (773)
T 2xau_A          105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDE  134 (773)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            356789999999999999999999977655

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.71  E-value=0.0059  Score=48.14  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            445699999999999999999865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.70  E-value=0.0031  Score=57.25  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|.+|+|||||++.|+|.
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            47999999999999999999884

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.67  E-value=0.0071  Score=48.15  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCcHHHHH-HHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLA-AEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLl-k~L~gll  131 (229)
                      +|.++.|.|+.|+||||++ +++....
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4889999999999999997 5555443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.66  E-value=0.0078  Score=50.06  Aligned_cols=26  Identities=35%  Similarity=0.459  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...+||+|+.||||||+.+.|+..+.
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999987654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.65  E-value=0.0083  Score=51.17  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ....+.|.||+|+|||+|.+.|+..+.
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345678889999999999999999775

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.58  E-value=0.009  Score=51.66  Aligned_cols=27  Identities=41%  Similarity=0.491  Sum_probs=24.0

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+..-+.|.||.|+|||||++.++..+
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            355678999999999999999999976

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.58  E-value=0.0082  Score=45.52  Aligned_cols=28  Identities=29%  Similarity=0.243  Sum_probs=23.8

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+.-+.|.||+|+|||++.+.|.....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            3456689999999999999999988654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.57  E-value=0.0045  Score=48.27  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            445699999999999999999854

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.55  E-value=0.011  Score=47.28  Aligned_cols=32  Identities=25%  Similarity=0.163  Sum_probs=25.0

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      ++..-+.+ .|.-+.|.|++|+|||||...|..
T Consensus         7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            7 WHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            44444444 488899999999999999987765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.48  E-value=0.0057  Score=49.15  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHH-HHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAE-VVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~-L~gll  131 (229)
                      .++|+|..|+|||||++. +.|..
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            589999999999999998 66653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.47  E-value=0.0091  Score=53.74  Aligned_cols=25  Identities=32%  Similarity=0.682  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            4789999999999999999987664

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.46  E-value=0.0094  Score=50.12  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.-+.|.||+|+|||||++.|+..+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999875

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.45  E-value=0.0062  Score=55.07  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=31.7

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .|+.+.--+.+|+++.|.|++|+|||||+..|+....
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4666665689999999999999999999998888664

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.43  E-value=0.01  Score=51.46  Aligned_cols=27  Identities=30%  Similarity=0.564  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|..+.|.||.|+|||||++.++..+.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            467899999999999999999999886

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.39  E-value=0.0095  Score=48.92  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++.-.+.|.||+|+||||+..+|+..+.
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            66666799999999999999999999875

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.34  E-value=0.0086  Score=51.03  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+-.++|+|.+|+|||||++.|.|..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            34479999999999999999999854

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.33  E-value=0.01  Score=51.92  Aligned_cols=27  Identities=37%  Similarity=0.575  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.-+.|.||+|+||||+.+.|+..+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            355689999999999999999998764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.33  E-value=0.007  Score=54.20  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|.+++|||||++.|++.-
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999998753

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.32  E-value=0.012  Score=53.02  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=29.7

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |.=+.|.+|+..+|+|+.|+|||||+..|+....
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~  200 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA  200 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence            4557789999999999999999999998888653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.28  E-value=0.013  Score=50.96  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+..+.|.||.|+|||||++.+...+.
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~   70 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999998763

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.25  E-value=0.007  Score=55.32  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ..|-.++|+|+.|+|||||++.|++..
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            356679999999999999999999964

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.25  E-value=0.014  Score=51.16  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ....-+.|.||+|+|||||++.|+..+.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            3566799999999999999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.24  E-value=0.0082  Score=51.54  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +-.++|+|+.|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999998764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.24  E-value=0.0068  Score=55.08  Aligned_cols=33  Identities=42%  Similarity=0.702  Sum_probs=26.3

Q ss_pred             eeeeecCCcE--EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          100 LASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       100 isl~i~~Ge~--v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.-.|..|.+  +.|.||+|+|||||.++|+....
T Consensus        41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3344444554  89999999999999999999876

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.23  E-value=0.0032  Score=49.94  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            346999999999999999888753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.22  E-value=0.012  Score=49.16  Aligned_cols=27  Identities=41%  Similarity=0.553  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ....+.|.||.|+|||||.+.|+....
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            445688999999999999999998764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.22  E-value=0.015  Score=50.04  Aligned_cols=27  Identities=44%  Similarity=0.567  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +..-+.|.||+|+|||+|++.|+....
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            455689999999999999999998765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.08  E-value=0.016  Score=49.79  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.-+.|.||.|+|||+|+++|+..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999988653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.07  E-value=0.0068  Score=54.65  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|.+|+|||||++.|+|.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999884

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.06  E-value=0.012  Score=51.53  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=24.6

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -+.+|.++.|.||.|+|||||...++..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            5677888999999999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.019  Score=52.06  Aligned_cols=30  Identities=33%  Similarity=0.527  Sum_probs=25.3

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.+..=+.|.||+|+|||+|.+.|++.+.
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            344555689999999999999999999875

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=94.99  E-value=0.013  Score=51.72  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ++..++++|.+|+|||||++.|.+.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4668999999999999999999997

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.97  E-value=0.015  Score=50.88  Aligned_cols=27  Identities=44%  Similarity=0.567  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +..-+.|.||.|+|||||.+.|+..+.
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            445588999999999999999999775

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.95  E-value=0.016  Score=54.93  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.++.|+|.+||||||+.+.|...+.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~   77 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLV   77 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            577899999999999999999998773

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.95  E-value=0.015  Score=49.86  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|.||+|+|||||++.|+....
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.02  Score=51.93  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=25.9

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+++..-+.|.||+|+|||+|.++|++...
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            455666789999999999999999999875

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.90  E-value=0.016  Score=51.33  Aligned_cols=30  Identities=30%  Similarity=0.499  Sum_probs=25.7

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+++|.++.|.|++|+|||||+..++....
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~   99 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQ   99 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence            467999999999999999999987766543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.021  Score=51.90  Aligned_cols=30  Identities=40%  Similarity=0.566  Sum_probs=25.9

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.+..=+.|.||+|+|||+|.++|++...
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            355666789999999999999999999875

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.89  E-value=0.016  Score=50.73  Aligned_cols=26  Identities=31%  Similarity=0.631  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...+.|.||+|+|||||.+.|+..+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999998774

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.88  E-value=0.017  Score=53.45  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+..+++|+|++|+|||||+..|+..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999997765

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.86  E-value=0.016  Score=52.71  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.|.||+|+||||+.+.|+..+.
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcC
Confidence            488999999999999999999886

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=94.86  E-value=0.0073  Score=52.87  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -.++|+|..|+|||||++.|.|.
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~   54 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGR   54 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTS
T ss_pred             CeEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999985

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.86  E-value=0.019  Score=52.26  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...++.++|.+||||||+.+.|+..+.
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999987654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.85  E-value=0.019  Score=53.92  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .|.++.|.|.+||||||+.+.|...+.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            467899999999999999999998775

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.82  E-value=0.013  Score=50.39  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=27.1

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+...+..|.-+.|.||+|+|||+|++.|+..+.
T Consensus        38 ~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           38 RLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             HHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3333344567899999999999999999999765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=94.82  E-value=0.012  Score=54.98  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .--+|+|+|..|+|||||++.|.|.-
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999999853

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.81  E-value=0.02  Score=48.76  Aligned_cols=25  Identities=24%  Similarity=0.219  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .|..+.|.|+.|+|||||++.+...
T Consensus        30 ~~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           30 NYPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEECCCcCCHHHHHHHHHHH
Confidence            3689999999999999999998764

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.76  E-value=0.018  Score=53.36  Aligned_cols=28  Identities=7%  Similarity=0.084  Sum_probs=26.0

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..|.++.|+|.+||||||+-+.|+..+.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	5e-14
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	5e-09
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	8e-08
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	9e-08
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	9e-07
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	6e-06
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	2e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	9e-05
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	2e-04
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	3e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	4e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	4e-04
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.001
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	0.001
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.001
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	0.001
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.002
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.002
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	0.002
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	0.003
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.003
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	0.003
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	0.004
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.004
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.004
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	0.004
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	0.004
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	0.004

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 67.4 bits (164), Expect = 5e-14
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD----------PKEAHARRGAPW 158
           I+ +AG    GKST A  +   +++    +     + D           +    ++G P 
Sbjct: 82  IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPE 141

Query: 159 TFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217
           +++   L+  + +L++   +V AP + H + D + D     +Q  ++I++G  +   G  
Sbjct: 142 SYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMD 201

Query: 218 WKD------VSSMFDEKW 229
           +        VS   D   
Sbjct: 202 YPHDPHHVFVSDFVDFSI 219

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 17/151 (11%), Positives = 43/151 (28%), Gaps = 28/151 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINK--------------IWPQKASSFDSQDPKEA 150
            KH I+ + G  GAG ST+     +   +               + +     +      A
Sbjct: 2   KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAA 61

Query: 151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ------- 200
                + +++       L    +     G     ++ H   +     +  G         
Sbjct: 62  GDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFD 121

Query: 201 --HKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
               ++  +G +  +      +++ + D K 
Sbjct: 122 SDSHLLFYEGLHGAVVNS-EVNIAGLADLKI 151

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 48.6 bits (114), Expect = 8e-08
 Identities = 21/157 (13%), Positives = 50/157 (31%), Gaps = 16/157 (10%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57

Query: 143 DSQDPKEAHARR----------GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192
                 E   R                    L     + L+    +  P +DH   D   
Sbjct: 58  MDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDH-ETDTHS 116

Query: 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
              +      +++++G +L            ++ +  
Sbjct: 117 KRTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCP 153

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (116), Expect = 9e-08
 Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 30/155 (19%)

Query: 82  CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS- 140
            +D   + L + +       +       +  +GP G+GKS  + ++   + + +  + S 
Sbjct: 4   VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSI 61

Query: 141 -SFDSQD---PKEAHA-------------RRGAPWTFNPLLLLNCLKNLRNQGS------ 177
                 D     E                 RG P T +  LL   L  + N         
Sbjct: 62  GYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDT 121

Query: 178 ----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208
                Y  S   G GD       + L   + I++G
Sbjct: 122 VVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 156

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 9e-07
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 21/137 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS------SFDSQ-----DPKEAHARRGA- 156
           ++G++G   +GKS++ A++V+ + +             S DS        ++A A +G  
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 63

Query: 157 ----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
               P  F+  L+L  LK +    +V  P +D       E+ + V     VV+ +G   F
Sbjct: 64  NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PADVVLFEGILAF 122

Query: 213 LDGGVWKDVSSMFDEKW 229
                 ++V  +F  K 
Sbjct: 123 YS----QEVRDLFQMKL 135

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (103), Expect = 6e-06
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        + 
Sbjct: 24  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79

Query: 133 KIWPQKASSFDSQDPKEAHARRGAPWT 159
           +   + A                   T
Sbjct: 80  REGLKVAVIAVDPSSPVTGGSILGDKT 106

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   + 
Sbjct: 21  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76

Query: 133 KIWPQKASS 141
               + A  
Sbjct: 77  AAGHKVAVL 85

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 9e-05
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           HI  L G  G+GKS +A+EV  +++  +
Sbjct: 7   HIYVLMGVSGSGKSAVASEVAHQLHAAF 34

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132
           K +  + GP G GKST    +  +++
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLD 27

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           K I+   G PG+GKST A E + +    +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFY 30

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
             ++ L G   AGKS +   +   + + W
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVLPEPW 31

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 13/121 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNC 168
           +V + G PG G +T +   +  + K           +         G+            
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRK-----------EGVNYKMVSFGSVMFEVAKEEN-- 49

Query: 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228
           L + R+Q     P     +       I    +   V VD +        +      +   
Sbjct: 50  LVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLN 109

Query: 229 W 229
            
Sbjct: 110 E 110

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           ++  A   G GK+TL  +++  +  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCA 28

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 11/102 (10%), Positives = 20/102 (19%), Gaps = 5/102 (4%)

Query: 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLL 165
            K +  + G   +GKS L  ++    N       +    ++                   
Sbjct: 7   AKTVA-ILGGESSGKSVLVNKLAAVFNTTS----AWEYGREFVFEKLGGDEQAMQYSDYP 61

Query: 166 LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207
              L + R        S      D                  
Sbjct: 62  QMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAH 103

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
            ++ + G P  GK+ ++ ++ R +N I
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFI 29

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           I  + G PG GKST+ A+V   ++ 
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDN 27

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 82  CMDEVYDALAQRLL-PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133
                 +ALA+  L    + A   +V  I G  G  G GK+TLA   V+R+++
Sbjct: 20  VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ L+G PG+GKST+A  +     
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPG 29

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +  + G   +GK+TL  + V    +
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVR 27

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154
           I+ L GP GAGKSTL    + R+  +   K S  F  Q  +   A +
Sbjct: 27  ILHLVGPNGAGKSTL----LARMAGMTSGKGSIQFAGQPLEAWSATK 69

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
            + L G   +GK  +A  +   +N+
Sbjct: 8   TIFLTGYMNSGKDAIARALQVTLNQ 32

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           +V + G PG+GK T  A +VR   
Sbjct: 8   VVFVLGGPGSGKGTQCANIVRDFG 31

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           ++ + GP GAGK TL   +   + 
Sbjct: 5   VITIDGPSGAGKGTLCKAMAEALQ 28

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNC 168
            V L G  GAGK+T++  +   +            + D             F+P    + 
Sbjct: 21  TVWLTGLSGAGKTTVSMALEEYLVCHGIP----CYTLDGDNIRQGLNKNLGFSP---EDR 73

Query: 169 LKNLRNQGSVYAPSFDHGV 187
            +N+R    V     D G+
Sbjct: 74  EENVRRIAEVAKLFADAGL 92

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           +H+  L GPPG GK+TL  +    +  
Sbjct: 2   RHV-FLTGPPGVGKTTLIHKASEVLKS 27

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 89  ALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
              ++      L      K  +V L G  GAGK+TL   +++ I      K+ ++
Sbjct: 16  RFGKKF--AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY 68

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           S   V  I  + G PGAGK T   ++V+  +
Sbjct: 4   SPDQVSVIF-VLGGPGAGKGTQCEKLVKDYS 33

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 10/52 (19%), Positives = 17/52 (32%)

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
            +  + L   L         V       L G PG+GK++L + +        
Sbjct: 9   KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV 60

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIW 135
           + + G PG GK+++A  +   ++   
Sbjct: 8   ILITGTPGTGKTSMAEMIAAELDGFQ 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.96
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.95
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.94
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.93
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.92
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.92
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.91
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.9
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.9
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.84
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.83
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.99
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.89
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.47
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.25
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.06
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.02
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.0
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.97
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.91
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.91
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.81
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.72
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.71
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.71
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.69
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.67
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.62
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.59
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.58
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.54
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.52
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.51
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.47
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.46
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.46
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.44
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.41
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.37
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.32
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.31
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.28
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.28
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.24
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.22
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.2
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.2
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.19
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.18
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.15
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.14
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.13
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.13
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.12
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.1
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.09
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.08
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.08
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.08
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.07
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.06
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.06
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.06
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.06
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.05
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.03
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.03
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.01
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.0
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.99
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.99
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.98
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.97
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.94
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.92
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.91
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.89
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.88
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.86
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.86
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.85
d1okkd2	207	GTPase domain of the signal recognition particle r	96.85
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.84
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.83
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.81
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.8
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.79
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.78
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.76
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.72
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.71
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.71
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.67
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.64
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.64
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.64
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.64
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.62
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.59
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.58
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.58
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.57
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.56
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.55
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.52
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.52
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.51
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.5
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.5
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.49
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.46
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.46
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.42
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.41
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.4
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.36
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.36
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.35
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.35
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.35
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.33
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.3
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.29
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.29
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.28
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.28
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.28
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.28
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.25
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.23
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.21
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.21
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.15
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.12
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.11
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.1
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.09
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.07
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.06
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.04
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.02
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.01
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.99
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.98
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.97
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.9
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.88
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.87
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.86
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.83
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.79
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.75
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.72
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.69
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.69
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.64
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.57
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.56
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.54
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.51
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.47
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.46
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.45
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.4
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.4
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.39
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.38
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.32
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.25
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.23
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.15
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.12
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.09
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.08
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.02
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.88
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.84
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.82
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.75
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.7
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.47
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.44
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.36
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.25
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.17
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.11
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.04
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.01
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.78
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	93.73
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.48
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.23
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.96
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.85
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.85
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.78
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.71
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.65
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.64
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.61
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.46
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.44
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.26
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.1
d1g2912	240	Maltose transport protein MalK, N-terminal domain	91.92
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	91.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.69
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.67
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.55
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.32
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.18
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.17
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.06
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.05
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.92
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.7
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.7
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	90.55
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	90.17
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.07
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.97
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	89.88
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	89.62
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.18
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.13
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	88.9
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.75
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	88.6
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	88.47
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.25
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.09
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	88.07
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	87.97
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	87.87
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.21
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	86.89
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	86.29
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	85.91
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.71
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	84.78
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	84.56
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	84.24
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.73
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	82.06
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	81.75
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	81.67
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.87
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	80.75
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.73

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=9.1e-30  Score=213.66  Aligned_cols=146  Identities=14%  Similarity=0.212  Sum_probs=105.9

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hh
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HA  152 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~  152 (229)
                      |..|+++||+|+|++..    +|+||||+|++||+++|+||||||||||+|+|+|+++   |++|. .++|+++... ..
T Consensus         4 M~~I~v~nlsk~yg~~~----al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~   76 (239)
T d1v43a3           4 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   76 (239)
T ss_dssp             CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             cCeEEEEEEEEEECCEE----EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCcc
Confidence            44599999999999876    9999999999999999999999999999999999999   99997 8999865321 12


Q ss_pred             hcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCcc
Q 027060          153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHK  202 (229)
Q Consensus       153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~r  202 (229)
                      ++.+++.||.+.   .+||.||+.++...+.                           ..++.++.+|+..+.++..+++
T Consensus        77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~  156 (239)
T d1v43a3          77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD  156 (239)
T ss_dssp             GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred             cceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCC
Confidence            334555555543   4899999998765432                           1223455555555555555566


Q ss_pred             EEEecCCeeeecccCHHHHHHHHhh
Q 027060          203 VVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       203 vLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|++|||+..||...+.++++++..
T Consensus       157 iLllDEPts~LD~~~~~~i~~ll~~  181 (239)
T d1v43a3         157 VLLMDEPLSNLDAKLRVAMRAEIKK  181 (239)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             ceeecCCcccCCHHHHHHHHHHHHH
Confidence            6666666666666567777777654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.9e-29  Score=210.88  Aligned_cols=142  Identities=15%  Similarity=0.222  Sum_probs=81.5

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG  155 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~  155 (229)
                      |+++||+|+|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|. .++|+++... ..++.
T Consensus         1 Iev~nv~k~yg~~~----~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~   73 (232)
T d2awna2           1 VQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG   73 (232)
T ss_dssp             EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred             CEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhce
Confidence            68999999999875    8999999999999999999999999999999999999   99997 9999876432 22344


Q ss_pred             CCcccCcc---hhhhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEecCCeee
Q 027060          156 APWTFNPL---LLLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIVDGNYLF  212 (229)
Q Consensus       156 ~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~Ll  212 (229)
                      +++.||.+   +.+|++||+.++.........               ....++....++.|+++|+     |+.+|++++
T Consensus        74 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill  153 (232)
T d2awna2          74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL  153 (232)
T ss_dssp             EEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEE
T ss_pred             eeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            55555554   458999999987654421110               1233444555666666665     566666666


Q ss_pred             eccc-------CHHHHHHHHh
Q 027060          213 LDGG-------VWKDVSSMFD  226 (229)
Q Consensus       213 LDEP-------~~~~l~~~l~  226 (229)
                      ||||       ...++++++.
T Consensus       154 lDEPts~LD~~~~~~i~~~l~  174 (232)
T d2awna2         154 LDEPLSNLDAALRVQMRIEIS  174 (232)
T ss_dssp             EESTTTTSCHHHHHHHHHHHH
T ss_pred             EcCCCCCCCHHHHHHHHHHHH
Confidence            6666       4666666554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.95  E-value=3.5e-29  Score=210.65  Aligned_cols=145  Identities=21%  Similarity=0.219  Sum_probs=107.8

Q ss_pred             CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH----HHH
Q 027060           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP----KEA  150 (229)
Q Consensus        76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~----~~~  150 (229)
                      .+|+++||+|+|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|. .++|+++    ...
T Consensus         5 ~~Lev~~l~k~yg~~~----al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~   77 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             eEEEEeeEEEEECCEE----EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccccccccHHH
Confidence            4899999999999876    8999999999999999999999999999999999999   99997 8999864    233


Q ss_pred             HhhcCCCcccCc---chhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCC
Q 027060          151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQ  200 (229)
Q Consensus       151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~  200 (229)
                      ..+.++.+++|.   ++.+|+.||+.++...+..                           .++.++.+++..+.++..+
T Consensus        78 ~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~  157 (240)
T d1ji0a_          78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR  157 (240)
T ss_dssp             HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence            456676555554   4458999999876543211                           1223444455555555555


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|||+..||...+.++++++..
T Consensus       158 P~lLllDEPt~gLD~~~~~~i~~~i~~  184 (240)
T d1ji0a_         158 PKLLMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             CCEeeecCCCcCCCHHHHHHHHHHHHH
Confidence            555666666666665567888877764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.95  E-value=1.2e-29  Score=213.13  Aligned_cols=146  Identities=12%  Similarity=0.172  Sum_probs=103.6

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---  150 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---  150 (229)
                      |+.|+++||+|.|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|. .++|+++...   
T Consensus         1 M~~i~v~nl~k~yg~~~----al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~   73 (240)
T d1g2912           1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (240)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCcEEEEeEEEEECCEE----EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence            56799999999999865    8999999999999999999999999999999999999   99997 8999764221   


Q ss_pred             ----HhhcCCCcccCcc---hhhhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----
Q 027060          151 ----HARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----  203 (229)
Q Consensus       151 ----~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----  203 (229)
                          .+++.+++.||.+   +.+||.||+.++...+.....               ....++.+..++.|+++|+     
T Consensus        74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAra  153 (240)
T d1g2912          74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA  153 (240)
T ss_dssp             EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             hhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence                1234455555554   458999999987554421100               1223344444555555444     


Q ss_pred             EEecCCeeeeccc-------CHHHHHHHHhh
Q 027060          204 VIVDGNYLFLDGG-------VWKDVSSMFDE  227 (229)
Q Consensus       204 Li~d~~~LlLDEP-------~~~~l~~~l~~  227 (229)
                      |+.+|++++||||       .+..+++++..
T Consensus       154 L~~~P~iLllDEPt~~LD~~~~~~i~~~l~~  184 (240)
T d1g2912         154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKK  184 (240)
T ss_dssp             HHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred             HhcCCCEEEecCCCcccCHHHHHHHHHHHHH
Confidence            5555555555555       56777776643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.6e-29  Score=210.20  Aligned_cols=148  Identities=21%  Similarity=0.240  Sum_probs=103.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H-
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E-  149 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~-  149 (229)
                      +|+++||+|.|+.....+.+|+||||+|++||++||+||||||||||+++|+|+++   |++|. .++|+++.     . 
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL   77 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhhh
Confidence            58999999999876555668999999999999999999999999999999999999   99997 89998631     1 


Q ss_pred             --HHhhcCC-CcccCcchhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccC
Q 027060          150 --AHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGL  199 (229)
Q Consensus       150 --~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~  199 (229)
                        .++.+++ ++.+..++.+||+||+.++......                           .++.++.+|+..+.++..
T Consensus        78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~  157 (240)
T d3dhwc1          78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS  157 (240)
T ss_dssp             HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred             hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc
Confidence              1223443 3333334458999999987543321                           112233444444444444


Q ss_pred             CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++++|++|||+..||...+.++++++..
T Consensus       158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~  185 (240)
T d3dhwc1         158 NPKVLLCDEATSALDPATTRSILELLKD  185 (240)
T ss_dssp             CCSEEEEESGGGSSCHHHHHHHHHHHHH
T ss_pred             CCCeEEeccccccCCHHHhhHHHHHHHH
Confidence            4455555555555555467777777654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.95  E-value=3.6e-29  Score=208.73  Aligned_cols=143  Identities=16%  Similarity=0.235  Sum_probs=99.4

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~  154 (229)
                      +|+++||+|+|++.     +|+||||+|++||++||+||||||||||+|+|+|+++   |++|. .++|+++... ..++
T Consensus         1 mi~v~nlsk~y~~~-----aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r   72 (229)
T d3d31a2           1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (229)
T ss_dssp             CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEeCCE-----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHh
Confidence            58999999999863     7999999999999999999999999999999999999   99997 8999875321 1233


Q ss_pred             CCCcccCc---chhhhHHHHHHccccccCC------------------------CCCCCCCCchhhhhhccCCccEEEec
Q 027060          155 GAPWTFNP---LLLLNCLKNLRNQGSVYAP------------------------SFDHGVGDPVEDDILVGLQHKVVIVD  207 (229)
Q Consensus       155 ~~~~~~~~---~~~~tv~e~l~~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~~rvLi~d  207 (229)
                      .+++.||.   ++.+||.||+.++...+..                        .++.++.+|+..+.++..++++|++|
T Consensus        73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllD  152 (229)
T d3d31a2          73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD  152 (229)
T ss_dssp             TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred             cceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeec
Confidence            45555554   4458999999987543321                        11223334444444444444444444


Q ss_pred             CCeeeecccCHHHHHHHHhh
Q 027060          208 GNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       208 ~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +|+..||.....++++++..
T Consensus       153 EPts~LD~~~~~~i~~~l~~  172 (229)
T d3d31a2         153 EPLSALDPRTQENAREMLSV  172 (229)
T ss_dssp             SSSTTSCHHHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHHHHH
Confidence            44444444456777776643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=4.1e-29  Score=209.88  Aligned_cols=148  Identities=15%  Similarity=0.206  Sum_probs=104.7

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----  149 (229)
                      |..|+++||+|.|++.  .+.+|+||||+|++||++||+||||||||||+++|+|+++   |++|. .++|+++..    
T Consensus         1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~   75 (242)
T d1oxxk2           1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (242)
T ss_dssp             CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CCEEEEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCchh
Confidence            4569999999999643  2348999999999999999999999999999999999999   99997 889986421    


Q ss_pred             --HHhhcCCCcccCcc---hhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhc
Q 027060          150 --AHARRGAPWTFNPL---LLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILV  197 (229)
Q Consensus       150 --~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~  197 (229)
                        ...++.+++.||.+   +.+||+||+.++...+..                           .++.++.+|+..+.++
T Consensus        76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL  155 (242)
T d1oxxk2          76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL  155 (242)
T ss_dssp             SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred             hcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHH
Confidence              12234556666654   348999999998654321                           1122344444444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++|+|+..||.....++++++..
T Consensus       156 ~~~P~llllDEPt~~LD~~~~~~i~~~i~~  185 (242)
T d1oxxk2         156 VKDPSLLLLDEPFSNLDARMRDSARALVKE  185 (242)
T ss_dssp             TTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred             hhcccceeecCCccCCCHHHHHHHHHHHHH
Confidence            445555555555555555567777777654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.3e-28  Score=208.72  Aligned_cols=95  Identities=19%  Similarity=0.297  Sum_probs=80.5

Q ss_pred             CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----H
Q 027060           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----E  149 (229)
Q Consensus        75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~  149 (229)
                      |.+|+++||+|+|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|. .++|+++.    .
T Consensus         2 M~iL~v~nlsk~yg~~~----aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~   74 (254)
T d1g6ha_           2 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   74 (254)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             cceEEEEEEEEEECCeE----EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhHH
Confidence            66899999999999876    8999999999999999999999999999999999999   99997 89998642    2


Q ss_pred             HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060          150 AHARRGAPWTFNPL---LLLNCLKNLRNQG  176 (229)
Q Consensus       150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~~  176 (229)
                      ...+.++.+.||.+   +.+|+.||+.++.
T Consensus        75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~  104 (254)
T d1g6ha_          75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGE  104 (254)
T ss_dssp             HHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred             HHHHhcCCccCCccccCCCCeeeeeeeehh
Confidence            23455666666654   3489999998864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.5e-28  Score=205.32  Aligned_cols=148  Identities=16%  Similarity=0.250  Sum_probs=104.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~  150 (229)
                      +|+++||+|.|+.....+.+|+||||+|++||++||+||||||||||+++|+|+++   |++|. .++|+++.     ..
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhhc
Confidence            58999999999876556678999999999999999999999999999999999999   99997 89997531     11


Q ss_pred             --HhhcCCCcccCc---chhhhHHHHHHccccccCC-CCC------------------CCCCCchhhhhhccCCccE---
Q 027060          151 --HARRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-SFD------------------HGVGDPVEDDILVGLQHKV---  203 (229)
Q Consensus       151 --~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-~~~------------------~~~~~~~~~~l~~~~~~rv---  203 (229)
                        .++..+++.||.   .+.+||.||+.++..+... .++                  ....++.+..++.|+++||   
T Consensus        78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIA  157 (230)
T d1l2ta_          78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA  157 (230)
T ss_dssp             HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHH
Confidence              112234444444   4458999999986543211 111                  1122334455666665555   


Q ss_pred             --EEecCCeeeeccc-------CHHHHHHHHhh
Q 027060          204 --VIVDGNYLFLDGG-------VWKDVSSMFDE  227 (229)
Q Consensus       204 --Li~d~~~LlLDEP-------~~~~l~~~l~~  227 (229)
                        |+.+|++|+||||       ++.++.+++..
T Consensus       158 raL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~  190 (230)
T d1l2ta_         158 RALANNPPIILADQPTGALDSKTGEKIMQLLKK  190 (230)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             hhhhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence              6666666666666       46677766653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=5e-28  Score=203.30  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=111.2

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HHHh
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EAHA  152 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~~~  152 (229)
                      |+++||+|+|+++.    +|+|+||+|.+||++||+||||||||||+|+|+|+++   |++|. .++|+++.    ..+.
T Consensus         3 I~v~nl~k~yg~~~----vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~~   75 (238)
T d1vpla_           3 VVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVRK   75 (238)
T ss_dssp             EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHHT
T ss_pred             EEEEeEEEEECCEE----EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHHHh
Confidence            88999999999876    9999999999999999999999999999999999999   99997 89998642    2233


Q ss_pred             hcCC-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEE
Q 027060          153 RRGA-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVV  204 (229)
Q Consensus       153 ~~~~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvL  204 (229)
                      ..++ ++.+..+..+++.||+.+...++.                           ..++.++.+++..++++..++++|
T Consensus        76 ~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~il  155 (238)
T d1vpla_          76 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA  155 (238)
T ss_dssp             TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             hEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3333 444444556899999976533221                           123456666777777777777888


Q ss_pred             EecCCeeeecccCHHHHHHHHhh
Q 027060          205 IVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       205 i~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ++|||+..||...++++.+++..
T Consensus       156 lLDEPt~gLD~~~~~~i~~~i~~  178 (238)
T d1vpla_         156 ILDEPTSGLDVLNAREVRKILKQ  178 (238)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHH
T ss_pred             EecCCCCCCCHHHHHHHHHHHHH
Confidence            88888888887788888888764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=2e-27  Score=201.69  Aligned_cols=144  Identities=15%  Similarity=0.185  Sum_probs=99.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-------
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-------  148 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-------  148 (229)
                      .|+++||+|+|++..    +|+||||+|++||++||+||||||||||+++|+|+++   |++|. .++|+++.       
T Consensus         2 ~Lev~nl~k~yg~~~----al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~   74 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG   74 (258)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred             eEEEEEEEEEECCEE----EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccch
Confidence            599999999998875    8999999999999999999999999999999999999   99997 88887531       


Q ss_pred             -----------HHHhhcCC-CcccCcchhhhHHHHHHccccccCCC-----------------CCCCCCCchhhhhhccC
Q 027060          149 -----------EAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPS-----------------FDHGVGDPVEDDILVGL  199 (229)
Q Consensus       149 -----------~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~  199 (229)
                                 ..++++++ ++.+..++.+|+.+|+.++.......                 ......++.+..++.|+
T Consensus        75 ~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~  154 (258)
T d1b0ua_          75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ  154 (258)
T ss_dssp             SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred             hcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHH
Confidence                       12233443 33333344589999998753211000                 00001123344455555


Q ss_pred             CccE-----EEecCCeeeeccc-------CHHHHHHHHhh
Q 027060          200 QHKV-----VIVDGNYLFLDGG-------VWKDVSSMFDE  227 (229)
Q Consensus       200 ~~rv-----Li~d~~~LlLDEP-------~~~~l~~~l~~  227 (229)
                      ++|+     |+.+|++++||||       ...++++++.+
T Consensus       155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~  194 (258)
T d1b0ua_         155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ  194 (258)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhh
Confidence            5444     5556666666666       47777777654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=4e-27  Score=192.93  Aligned_cols=143  Identities=17%  Similarity=0.222  Sum_probs=102.6

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG  155 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~  155 (229)
                      .|+++||++.|+. .    +|+||||+|++|+++||+||||||||||+++|+|+++   |++|. .++|+++...+.+.+
T Consensus         2 ~lev~~ls~~y~~-~----vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred             eEEEEEEEEEeCC-e----EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcEE
Confidence            4899999999964 3    7999999999999999999999999999999999999   99997 899988765444433


Q ss_pred             C-CcccCcchhhhHHHHHHccccccCC------------------------CCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060          156 A-PWTFNPLLLLNCLKNLRNQGSVYAP------------------------SFDHGVGDPVEDDILVGLQHKVVIVDGNY  210 (229)
Q Consensus       156 ~-~~~~~~~~~~tv~e~l~~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~~rvLi~d~~~  210 (229)
                      + ++....+..+++.+++.+...++..                        .++.++.+++..+.++..+++++++|||+
T Consensus        74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt  153 (200)
T d1sgwa_          74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  153 (200)
T ss_dssp             EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            2 3333333446777777654322211                        12334445555555556666667777777


Q ss_pred             eeecccCHHHHHHHHhh
Q 027060          211 LFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       211 LlLDEP~~~~l~~~l~~  227 (229)
                      ..||+..+.++.+.+..
T Consensus       154 ~gLD~~~~~~i~~~l~~  170 (200)
T d1sgwa_         154 VAIDEDSKHKVLKSILE  170 (200)
T ss_dssp             TTSCTTTHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            77776678777766654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.92  E-value=6.7e-27  Score=196.81  Aligned_cols=145  Identities=19%  Similarity=0.179  Sum_probs=105.2

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---Hh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---HA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---~~  152 (229)
                      ||+++||+|+|++..   .+|+||||+|++||++||+||||||||||+++|+|+++   |++|. .++|.++...   ..
T Consensus         1 mle~knvsf~Y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   74 (242)
T d1mv5a_           1 MLSARHVDFAYDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW   74 (242)
T ss_dssp             CEEEEEEEECSSSSS---CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred             CEEEEEEEEECCCCC---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHHHH
Confidence            589999999997642   27999999999999999999999999999999999999   99997 9999865432   12


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccC---------------------------------CCCCCCCCCchhhhhhc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      +..+.+++|.+.+  .|+.+|+.++.....                                 ..++.++.+++..++++
T Consensus        75 r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal  154 (242)
T d1mv5a_          75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF  154 (242)
T ss_dssp             TTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred             HhheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            3345566665543  689999876532110                                 01233445555556666


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++|+++..||..+.+.+.+.+..
T Consensus       155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~  184 (242)
T d1mv5a_         155 LRNPKILMLDEATASLDSESESMVQKALDS  184 (242)
T ss_dssp             HHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             hcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence            666666666666666666677777777654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.3e-26  Score=190.72  Aligned_cols=145  Identities=19%  Similarity=0.158  Sum_probs=100.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~  150 (229)
                      .|+++||+++|++.. ...+|+||||+|++||++||+||||||||||+++|+|+++   |++|. .++|.++.     ..
T Consensus        11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHH
T ss_pred             eEEEEEEEEECCCCC-CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchhhhHHH
Confidence            499999999997642 3448999999999999999999999999999999999999   99997 89998653     23


Q ss_pred             HhhcCC-CcccCcchhhhHHHHHHccccccC---------------------------------CCCCCCCCCchhhhhh
Q 027060          151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------------PSFDHGVGDPVEDDIL  196 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~  196 (229)
                      +.++++ ++.++.+ ..|+.+|+.++.....                                 ..++.++.+++..+++
T Consensus        87 r~~i~~v~Q~~~lf-~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa  165 (251)
T d1jj7a_          87 HRQVAAVGQEPQVF-GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA  165 (251)
T ss_dssp             HHHEEEECSSCCCC-SSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred             HHHhhhcccccccc-CcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeec
Confidence            334443 3333322 2699999998632110                                 0122334444444455


Q ss_pred             ccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060          197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  226 (229)
Q Consensus       197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~  226 (229)
                      +..++++|++|+++..||..+..++.+++.
T Consensus       166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~  195 (251)
T d1jj7a_         166 LIRKPCVLILDDATSALDANSQLQVEQLLY  195 (251)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             cccCCcEEEecCcCcccChhhHHHHHHHHH
Confidence            555555555555555555556777777764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.6e-25  Score=186.85  Aligned_cols=144  Identities=16%  Similarity=0.151  Sum_probs=104.6

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----HHHH
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-----KEAH  151 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-----~~~~  151 (229)
                      |+++||+++|++..  ..+|+||||+|++||++||+|+||||||||+++|+|+++   |++|. .++|.++     ...+
T Consensus         2 I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr   76 (241)
T d2pmka1           2 ITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWLR   76 (241)
T ss_dssp             EEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHH
T ss_pred             eEEEEEEEEeCCCC--cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CCCCEEEECCEEecccchhhhh
Confidence            78999999996532  127899999999999999999999999999999999999   99997 8999864     2334


Q ss_pred             hhcCC-CcccCcchhhhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060          152 ARRGA-PWTFNPLLLLNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG  198 (229)
Q Consensus       152 ~~~~~-~~~~~~~~~~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~  198 (229)
                      ..+++ ++.+.. ...|+++|+.++....                                ...++.++.+++..++++.
T Consensus        77 ~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~  155 (241)
T d2pmka1          77 RQVGVVLQDNVL-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV  155 (241)
T ss_dssp             HHEEEECSSCCC-TTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred             ceEEEEeccccc-CCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhh
Confidence            44443 333322 2379999998763211                                0123344556666666666


Q ss_pred             CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++++|++|+++..||..+.+.+.+.+..
T Consensus       156 ~~p~ililDEpts~LD~~~~~~i~~~l~~  184 (241)
T d2pmka1         156 NNPKILIFDEATSALDYESEHVIMRNMHK  184 (241)
T ss_dssp             TCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             cccchhhhhCCccccCHHHHHHHHHHHHH
Confidence            66777777777777777678877777654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.90  E-value=1.7e-25  Score=189.36  Aligned_cols=143  Identities=15%  Similarity=0.130  Sum_probs=99.4

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----HH
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----AH  151 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~~  151 (229)
                      |+++||+++|++...  .+|+||||+|++||++||+|+||||||||+++|+|+++   |++|. .++|.++..     .+
T Consensus        17 I~~~nvsf~Y~~~~~--~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr   91 (255)
T d2hyda1          17 IDIDHVSFQYNDNEA--PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSLR   91 (255)
T ss_dssp             EEEEEEEECSCSSSC--CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHHH
T ss_pred             EEEEEEEEEeCCCCC--cceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCHHHhh
Confidence            999999999976432  37899999999999999999999999999999999999   99997 899986532     33


Q ss_pred             hhcCCCcccCcch--hhhHHHHHHccccccC--------------------C------------CCCCCCCCchhhhhhc
Q 027060          152 ARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------P------------SFDHGVGDPVEDDILV  197 (229)
Q Consensus       152 ~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------~------------~~~~~~~~~~~~~l~~  197 (229)
                      ..++  +++|.+.  ..|+++|+.++.....                    +            .++.++.+|+..++++
T Consensus        92 ~~i~--~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal  169 (255)
T d2hyda1          92 NQIG--LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  169 (255)
T ss_dssp             HTEE--EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             heee--eeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence            3344  4444433  3799999988643210                    0            1122333444444444


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++|+++..||..+...+.+.+..
T Consensus       170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~  199 (255)
T d2hyda1         170 LNNPPILILDEATSALDLESESIIQEALDV  199 (255)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            445555555555555555567777777653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.90  E-value=1.4e-24  Score=183.56  Aligned_cols=146  Identities=18%  Similarity=0.195  Sum_probs=101.0

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA  152 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~  152 (229)
                      -|+++||+++|++..  ..+|+||||+|++||++||+||||||||||+++|+|+++   |++|. .++|.++..   ...
T Consensus        13 ~I~~~nvsf~Y~~~~--~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   87 (253)
T d3b60a1          13 DLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL   87 (253)
T ss_dssp             CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred             EEEEEEEEEEeCCCC--CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhhhhh
Confidence            399999999998643  237999999999999999999999999999999999999   99997 899976422   222


Q ss_pred             hcCCCcccCcchh--hhHHHHHHccccccC---------------------------------CCCCCCCCCchhhhhhc
Q 027060          153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------------------------PSFDHGVGDPVEDDILV  197 (229)
Q Consensus       153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~~  197 (229)
                      +..+.+.+|.+.+  .++.+|+.++.....                                 ..++.++.+|+..++++
T Consensus        88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal  167 (253)
T d3b60a1          88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL  167 (253)
T ss_dssp             HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred             hheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence            2334445554433  678888877532110                                 01223344555555555


Q ss_pred             cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      ..++++|++|+++..||..+.+.+.+.+..
T Consensus       168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~  197 (253)
T d3b60a1         168 LRDSPILILDEATSALDTESERAIQAALDE  197 (253)
T ss_dssp             HHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             hcCCCEEEeccccccCCHHHHHHHHHHHHH
Confidence            555555666666666665567777777653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=1.3e-24  Score=181.88  Aligned_cols=140  Identities=15%  Similarity=0.206  Sum_probs=96.8

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR  154 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~  154 (229)
                      .|++ ++.|+|++..    +  ||||++. +|+++|+||||||||||+|+|+|+++   |++|. .++|.++... ..++
T Consensus         2 ~l~v-~~~k~~g~~~----~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r   70 (240)
T d2onka1           2 FLKV-RAEKRLGNFR----L--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR   70 (240)
T ss_dssp             CEEE-EEEEEETTEE----E--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred             EEEE-EEEEEECCEE----E--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHc
Confidence            3777 6789999864    4  8999996 68999999999999999999999999   99997 8999865331 2234


Q ss_pred             CCCcccCcc---hhhhHHHHHHccccccCC------------CCC-CCCCCchhhhhhccCCccE-----EEecCCeeee
Q 027060          155 GAPWTFNPL---LLLNCLKNLRNQGSVYAP------------SFD-HGVGDPVEDDILVGLQHKV-----VIVDGNYLFL  213 (229)
Q Consensus       155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~~------------~~~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlL  213 (229)
                      ++++.||.+   +.+||.||+.++......            .+. ....++.+..++.|+++||     |+.+|++++|
T Consensus        71 ~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illl  150 (240)
T d2onka1          71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL  150 (240)
T ss_dssp             CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred             CceeeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEe
Confidence            566666554   448999999997542210            000 1233444555555555555     6666666666


Q ss_pred             ccc-------CHHHHHHHHhh
Q 027060          214 DGG-------VWKDVSSMFDE  227 (229)
Q Consensus       214 DEP-------~~~~l~~~l~~  227 (229)
                      |||       .+..+++++..
T Consensus       151 DEPts~LD~~~~~~i~~~i~~  171 (240)
T d2onka1         151 DEPLSAVDLKTKGVLMEELRF  171 (240)
T ss_dssp             ESTTSSCCHHHHHHHHHHHHH
T ss_pred             cCccccCCHHHHHHHHHHHHH
Confidence            666       45666666643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.8e-22  Score=165.28  Aligned_cols=139  Identities=21%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A  150 (229)
Q Consensus        77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~  150 (229)
                      +|+++||+++|        +|++|||+|++||++||+||||||||||+++|+|+ .   |++|. .++|+++..     .
T Consensus         3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~---~~~G~I~~~g~~i~~~~~~~~   70 (231)
T d1l7vc_           3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T---SGKGSIQFAGQPLEAWSATKL   70 (231)
T ss_dssp             EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-C---CCSSEEEESSSBGGGSCHHHH
T ss_pred             EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-C---CCceEEEECCEECCcCCHHHH
Confidence            69999998665        58899999999999999999999999999999996 4   67886 899986432     2


Q ss_pred             HhhcCC-CcccCcchhhhHHHHHHccccccC----------------------CCCCCCCCCchhhhhhccC-------C
Q 027060          151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYA----------------------PSFDHGVGDPVEDDILVGL-------Q  200 (229)
Q Consensus       151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~-------~  200 (229)
                      ....++ .+........++.+++.++.....                      ..++.++.+++..+.++..       .
T Consensus        71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~  150 (231)
T d1l7vc_          71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA  150 (231)
T ss_dssp             HHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred             HhhceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCC
Confidence            222222 333222233556666654322110                      1122334444444444322       3


Q ss_pred             ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          201 HKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +++|++|||+..||.-....+.+++..
T Consensus       151 p~llllDEPt~gLD~~~~~~i~~~i~~  177 (231)
T d1l7vc_         151 GQLLLLDEPMNSLDVAQQSALDKILSA  177 (231)
T ss_dssp             CCEEEESSCSTTCCHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            356666666666665456777776654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2.7e-22  Score=171.86  Aligned_cols=80  Identities=10%  Similarity=0.111  Sum_probs=60.1

Q ss_pred             EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA  156 (229)
Q Consensus        78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~  156 (229)
                      |.+++++  |.+..    +|+||||+|++||++||+||||||||||+++|+|+++   |++|. .++|+          +
T Consensus        39 i~~~~~~--~~g~p----vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~----------i   99 (281)
T d1r0wa_          39 VSFSHLC--LVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSGR----------V   99 (281)
T ss_dssp             -CHHHHH--HTTCE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCSC----------E
T ss_pred             EEEEEcC--CCCCe----EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECCE----------E
Confidence            4555554  34433    8999999999999999999999999999999999999   99997 77763          2


Q ss_pred             CcccCcch--hhhHHHHHHccc
Q 027060          157 PWTFNPLL--LLNCLKNLRNQG  176 (229)
Q Consensus       157 ~~~~~~~~--~~tv~e~l~~~~  176 (229)
                      .+.+|...  ..|+.+|+.++.
T Consensus       100 ~~v~Q~~~l~~~tv~eni~~~~  121 (281)
T d1r0wa_         100 SFCSQFSWIMPGTIKENIIFGV  121 (281)
T ss_dssp             EEECSSCCCCSEEHHHHHTTTS
T ss_pred             EEEeccccccCceeeccccccc
Confidence            22223222  157888887653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.99  E-value=2.5e-12  Score=99.98  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD  146 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~  146 (229)
                      .++|+||||||||||+++|+|.+.   +..|. ...+.+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~---~~~g~~~~~~~~   37 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVR   37 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG---GGEEEEEEEEEC
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCC---CCcceEEECCcc
Confidence            589999999999999999999999   88875 555443

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.1e-10  Score=99.96  Aligned_cols=122  Identities=21%  Similarity=0.271  Sum_probs=83.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCce-EecCCC--HHHH-----HhhcCCCcccCcchhhhHHHHHHccc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKAS-SFDSQD--PKEA-----HARRGAPWTFNPLLLLNCLKNLRNQG  176 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~--p~~G~-~~~g~~--~~~~-----~~~~~~~~~~~~~~~~tv~e~l~~~~  176 (229)
                      --+|||.|++|||||||.+.|..++....  +.-.. ..+|.-  -...     ..+.|.|..++...+...+..+..+.
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D~~~L~~~L~~lk~g~  159 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGV  159 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTC
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHHhcCCccCCchHhhhHHHHHHHHHHHHcCC
Confidence            35899999999999999999999885211  11111 334431  1111     22445666677666777777777664


Q ss_pred             -cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHH------HHHHHhhh
Q 027060          177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD------VSSMFDEK  228 (229)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~------l~~~l~~~  228 (229)
                       .+..|.|++...+...........+.|+|+|+.+++.|++.|..      +.+++|.+
T Consensus       160 ~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~  218 (308)
T d1sq5a_         160 PNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFS  218 (308)
T ss_dssp             SCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEE
T ss_pred             CcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhhee
Confidence             46778999888888776666667789999999999988764433      66776654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=2.6e-08  Score=84.00  Aligned_cols=109  Identities=24%  Similarity=0.336  Sum_probs=72.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccc---CCCCce-EecCC--CHH------H------HHhhcCCCcccCcchhhhHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINKI---WPQKAS-SFDSQ--DPK------E------AHARRGAPWTFNPLLLLNCL  169 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~~---~p~~G~-~~~g~--~~~------~------~~~~~~~~~~~~~~~~~tv~  169 (229)
                      -++||.|+.|||||||.+.|.-.+...   ...-.. .+|+.  ...      .      ....+|+|..|+...+..++
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~ll~~~l  107 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVL  107 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHHHHHHHH
Confidence            489999999999999998886554200   011122 45553  111      1      12236889999988888888


Q ss_pred             HHHHccc------cccCCCCCCCC----CCchhhhhhccCCccEEEecCCeeeeccc
Q 027060          170 KNLRNQG------SVYAPSFDHGV----GDPVEDDILVGLQHKVVIVDGNYLFLDGG  216 (229)
Q Consensus       170 e~l~~~~------~~~~~~~~~~~----~~~~~~~l~~~~~~rvLi~d~~~LlLDEP  216 (229)
                      +.|.-+.      .+..|.||+..    +++......+..+++|+|+|+++++..+.
T Consensus       108 ~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p~  164 (286)
T d1odfa_         108 NTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  164 (286)
T ss_dssp             HHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             HHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccch
Confidence            8887653      36678888654    55655445566778999999999998664

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.7e-06  Score=68.50  Aligned_cols=115  Identities=23%  Similarity=0.414  Sum_probs=58.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcccC-CCCc--e-Ee--cCC----CHHHH-HhhcCC-Cc----ccCcchhhhHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKA--S-SF--DSQ----DPKEA-HARRGA-PW----TFNPLLLLNCLKN  171 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~~~-p~~G--~-~~--~g~----~~~~~-~~~~~~-~~----~~~~~~~~tv~e~  171 (229)
                      -+|||.|+.|||||||.+.|...+.... +..+  . .+  ++.    ..... ....+. .+    .++...+......
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   82 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKE   82 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccCCcHHHHHHHHHhhhhh
Confidence            3799999999999999999988774210 1111  1 22  221    11111 111121 11    1222222344444


Q ss_pred             HHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          172 LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       172 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      +..+.....+.++.....+...... .....++++++.+++.+.    .+.+++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiveg~~~l~~~----~l~~~~D~  133 (213)
T d1uj2a_          83 ITEGKTVQIPVYDFVSHSRKEETVT-VYPADVVLFEGILAFYSQ----EVRDLFQM  133 (213)
T ss_dssp             HHTTCCEEEEEEETTTTEEEEEEEE-ECCCSEEEEECTTTTSSH----HHHHHCSE
T ss_pred             hhcCCcccccccccccccccCceEE-ecccceEEecchhhhccH----HHHhhhhe
Confidence            5555555455555544444322222 245677888887777654    45555444

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.97  E-value=5.1e-07  Score=75.96  Aligned_cols=116  Identities=11%  Similarity=0.121  Sum_probs=61.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc--eEecCCC-----HH-------HH--HhhcCC----CcccCcchhhh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQD-----PK-------EA--HARRGA----PWTFNPLLLLN  167 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G--~~~~g~~-----~~-------~~--~~~~~~----~~~~~~~~~~t  167 (229)
                      -+|||.|++||||||+.+.|...+.   ...-  ..+.+.+     ..       ..  ..+..+    +..++...+..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~---~~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL~~   81 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFR---REGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER   81 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH---HHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHh---hcCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCcccccHHHHHH
Confidence            3899999999999999999988875   2211  1332221     10       00  111122    22333334466


Q ss_pred             HHHHHHccccccCCCCCCCCCCchhhhh---------hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          168 CLKNLRNQGSVYAPSFDHGVGDPVEDDI---------LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       168 v~e~l~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .+..+..+.....+.|++..++......         .+.....+|+.|+-+.++..+.+ .+++++|.
T Consensus        82 ~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~-~ir~~~Dl  149 (288)
T d1a7ja_          82 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEV-NIAGLADL  149 (288)
T ss_dssp             HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSC-BCGGGCSE
T ss_pred             HHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchh-hhHhhcCe
Confidence            7777778888888888876554432111         12456789999998877643221 24444443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=1.9e-07  Score=71.75  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=29.3

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.+.++++.+| +++|+|+|||||||+|.+|.-.+.
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            45667777765 999999999999999999987664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=2.8e-06  Score=63.86  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999998775

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.81  E-value=5.5e-06  Score=64.00  Aligned_cols=26  Identities=38%  Similarity=0.562  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |.++.|+||+|||||||++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999987654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.72  E-value=1.1e-05  Score=60.78  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=25.6

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|.+|.|+|++||||||+.+.|+-.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4799999999999999999999998774

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.72  E-value=9.2e-06  Score=61.62  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++|+|.+|||||||++.|...+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999998888776

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.1e-05  Score=60.74  Aligned_cols=28  Identities=39%  Similarity=0.617  Sum_probs=25.4

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+.++.|+|++||||||+.+.|+..+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678999999999999999999999775

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.71  E-value=8.4e-06  Score=61.48  Aligned_cols=26  Identities=38%  Similarity=0.529  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .|.++.|.|++||||||+.+.|...+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999997654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=8.7e-06  Score=61.37  Aligned_cols=24  Identities=42%  Similarity=0.661  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|.||+|+|||||++.++..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            588999999999999999999886

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.67  E-value=1.2e-05  Score=66.47  Aligned_cols=29  Identities=21%  Similarity=0.460  Sum_probs=23.0

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +++.++ +.+|+|||||||||+|.+|.-++
T Consensus        20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EeCCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence            444443 89999999999999999996543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.62  E-value=1.5e-05  Score=60.08  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..|+|+|+.|||||||.+.|+..+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999998764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.59  E-value=2.1e-05  Score=59.21  Aligned_cols=28  Identities=21%  Similarity=0.464  Sum_probs=24.8

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++|-.+.|.|++||||||+.+.|+-.+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4678899999999999999999988654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.58  E-value=2.3e-05  Score=58.77  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+|.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999999875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.54  E-value=2.1e-05  Score=60.27  Aligned_cols=25  Identities=28%  Similarity=0.583  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+|||.|++|||||||.+.|.-.+.
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4799999999999999999998776

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.52  E-value=2.9e-05  Score=58.55  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|+|.|++||||||+++.|...+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999998886

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=3e-05  Score=66.26  Aligned_cols=27  Identities=22%  Similarity=0.496  Sum_probs=22.7

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      +++..+.+.+|+|+|||||||++.+|.
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            334556699999999999999999985

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.47  E-value=3.2e-05  Score=57.58  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .++.|.|++||||||+.+.|+..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.3e-05  Score=56.77  Aligned_cols=24  Identities=42%  Similarity=0.700  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|+||+||||||+.+.|+-.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            578899999999999999998765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.46  E-value=3.2e-05  Score=57.01  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++.|.|++|||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.3e-05  Score=60.04  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.+|.|+|++||||||+.+.|+-.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999998775

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4.2e-05  Score=60.61  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .|.++.|+||+|+|||||++.|.-..+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            488999999999999999999887643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.37  E-value=4.8e-05  Score=56.81  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|+|++||||||+.+.|+-.+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            477999999999999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.32  E-value=6.3e-05  Score=59.55  Aligned_cols=24  Identities=42%  Similarity=0.650  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|+|+.|||||||++.|...+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            789999999999999999987553

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.31  E-value=6.9e-05  Score=57.73  Aligned_cols=28  Identities=36%  Similarity=0.494  Sum_probs=24.3

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++|-.+.|+||.||||||+.+.|+-.+.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688899999999999999999996553

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=4.7e-05  Score=61.42  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|...+++|++|+|||||++.|.+-..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence            689999999999999999999987554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.28  E-value=7.8e-05  Score=57.53  Aligned_cols=27  Identities=37%  Similarity=0.597  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +..+|.|+||.||||||+.+.|+-.+.
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            456899999999999999999987654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=5.7e-05  Score=58.38  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .|+|+|+.|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999984

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=8.6e-05  Score=57.45  Aligned_cols=28  Identities=29%  Similarity=0.508  Sum_probs=24.1

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++-.++.|+||.||||||+.+.|+..+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456899999999999999999998664

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.20  E-value=7.6e-05  Score=57.80  Aligned_cols=29  Identities=28%  Similarity=0.563  Sum_probs=25.5

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.++.++.|+||+||||||+.+.|+..+.
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999999988654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.20  E-value=9.5e-05  Score=55.88  Aligned_cols=24  Identities=42%  Similarity=0.560  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999999886

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=9.4e-05  Score=57.17  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |.|+||+|||||||++.|....+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            68999999999999999987653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00011  Score=53.95  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|++|+|||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999884

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=9.2e-05  Score=55.06  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      |-.++|+|+.|+|||||++.|+|.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.14  E-value=0.00013  Score=55.11  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.|+|++||||||+.+.|+..+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999998775

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00013  Score=56.67  Aligned_cols=23  Identities=48%  Similarity=0.716  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.|+||+|||||||++.|....+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999987654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.13  E-value=0.00012  Score=58.75  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ....+.|.||+|||||||.+.|++.+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            445688999999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.12  E-value=0.00013  Score=53.52  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.10  E-value=0.00014  Score=53.71  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|.+|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.09  E-value=0.00016  Score=54.72  Aligned_cols=24  Identities=42%  Similarity=0.551  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|+||.||||||+.+.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999988764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00017  Score=54.92  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +.+|+++.|.||+|+|||||+-.++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999998887654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00017  Score=55.54  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ..+.|+||+|+|||||++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999988654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.08  E-value=8.8e-05  Score=56.32  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -|+|+|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999884

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00017  Score=55.49  Aligned_cols=24  Identities=42%  Similarity=0.656  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.|+||.||||||..+.|+-.+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            789999999999999999988664

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.00014  Score=55.46  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +=.|||+|..|+|||||++.|+|.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            446899999999999999999874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.00012  Score=55.24  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .|+|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00016  Score=55.93  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .|+|+|+.|||||||++.|.+-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.06  E-value=0.00011  Score=56.57  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -++.|+||.||||||+.+.|+--+.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3588999999999999999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00013  Score=55.05  Aligned_cols=22  Identities=32%  Similarity=0.661  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +|+|+|..|+|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.03  E-value=0.00019  Score=55.33  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -++.++|.+|||||||.+.|+..+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999998765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00019  Score=54.97  Aligned_cols=27  Identities=37%  Similarity=0.385  Sum_probs=22.6

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .-+..+++.++|++||||||+.+.+..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999987643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.01  E-value=0.00019  Score=54.27  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|+|++||||||+.+.|+-.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            366899999999999999998765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.0002  Score=53.89  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.|+|+.||||||+.+.|+..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56889999999999999998775

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00016  Score=54.93  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +|+|+|..|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.99  E-value=0.00022  Score=54.41  Aligned_cols=24  Identities=42%  Similarity=0.613  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.|+||.||||||+.+.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999998775

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00023  Score=55.36  Aligned_cols=24  Identities=33%  Similarity=0.736  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|+|.||+||||||+.+.|+.-+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999998775

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.98  E-value=7.1e-05  Score=57.24  Aligned_cols=21  Identities=52%  Similarity=0.684  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 027060          110 VGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      |||+|+.++|||||++.|+|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999774

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.97  E-value=0.0001  Score=55.39  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +.-.++|+|++|+|||||++.|.+-
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3346899999999999999999774

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00028  Score=56.97  Aligned_cols=30  Identities=23%  Similarity=0.336  Sum_probs=23.4

Q ss_pred             eeeecC-CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          101 ASNVNV-KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       101 sl~i~~-Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ++.+.+ +.++.|.|||.+||||+||.++-.
T Consensus        34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          34 PLNLSPQRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             EEEECSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEECCCceEEEEeccCchhhHHHHHHHHHH
Confidence            344433 467899999999999999998654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.92  E-value=5.9e-05  Score=61.04  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|...+++|++|+|||||++.|.+-..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH
Confidence            688999999999999999999988654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.91  E-value=0.00021  Score=54.91  Aligned_cols=22  Identities=45%  Similarity=0.661  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      -++||.|+.||||||+.+.|.-
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00031  Score=54.84  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.+|+|-|+.||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999998775

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00025  Score=53.92  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|+||.||||||..+.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999987654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.00034  Score=55.75  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=25.4

Q ss_pred             eeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       100 isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++.-.+..+++++||+|+||||.+--|+..+.
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344455677999999999999998876766554

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.00034  Score=53.19  Aligned_cols=24  Identities=46%  Similarity=0.739  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|+||.||||||+.+.|+.-+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999988764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.86  E-value=0.00017  Score=55.44  Aligned_cols=27  Identities=26%  Similarity=0.289  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.-+|+|-|+.||||||+++.|...+.
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999987664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00011  Score=55.90  Aligned_cols=21  Identities=57%  Similarity=0.831  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 027060          110 VGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      |||+|..++|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00036  Score=55.05  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.6

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++|-+|+|-|+.||||||+.+.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999998775

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.85  E-value=0.00038  Score=55.21  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.+++++||+|+||||.+--|+..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999887877665

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.84  E-value=0.00034  Score=54.61  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+++|-||.||||||+.+.|+.-+.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3688999999999999999999775

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.83  E-value=0.00034  Score=56.05  Aligned_cols=29  Identities=28%  Similarity=0.347  Sum_probs=23.3

Q ss_pred             eeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ++.+. ++++.|.|||.+||||+||.+.-.
T Consensus        30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          30 DLEMA-HELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEES-SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEeC-CcEEEEECCCccccchhhhhhHHH
Confidence            44554 468999999999999999987654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.81  E-value=0.00038  Score=53.85  Aligned_cols=27  Identities=22%  Similarity=0.518  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.-.+.|+||.||||||+.+.|+--+.
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHC
Confidence            455789999999999999999998654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00041  Score=55.15  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++-.+..+++++||+|+||||.+--|+..+.
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3334456899999999999999887877665

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.79  E-value=0.00025  Score=52.93  Aligned_cols=31  Identities=23%  Similarity=0.192  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcc-cCCCCc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINK-IWPQKA  139 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~-~~p~~G  139 (229)
                      .++|+|+.|+|||||++.|.+.... ..|+.|
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~   35 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLG   35 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCcccceEe
Confidence            5889999999999999999874321 235555

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00043  Score=52.71  Aligned_cols=24  Identities=46%  Similarity=0.725  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|+||.||||||+.+.|+-.+.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            577999999999999999988664

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0004  Score=58.73  Aligned_cols=28  Identities=32%  Similarity=0.433  Sum_probs=24.7

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.-++||.|++|+|||||+..|...+.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            4577899999999999999999987664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.0004  Score=53.86  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -|+|+|+.|+|||||++.|.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.71  E-value=0.00019  Score=60.64  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      +..+.-+.|.|+.|||||||++.|.+.++   ++.=
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~---~~~r  195 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEER  195 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSC---TTCC
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhcc---cccc
Confidence            34455589999999999999999999887   6543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.71  E-value=0.00038  Score=52.18  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ++.-.++|+|.+|||||||++.|.+-
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34456999999999999999999874

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.70  E-value=0.00014  Score=53.87  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|..++|||||++.|+|.-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999964

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00014  Score=54.73  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .-.|+|+|..++|||||++.|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345999999999999999999774

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00066  Score=53.97  Aligned_cols=25  Identities=40%  Similarity=0.611  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+.|.||+|+||||++++|+..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00063  Score=53.66  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+|.+|+|-|+-||||||+.+.|.-.+.
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3799999999999999999999998776

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.64  E-value=0.00056  Score=51.05  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988763

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.64  E-value=0.00054  Score=54.04  Aligned_cols=24  Identities=42%  Similarity=0.675  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|.||+|+||||++++|+..+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            378999999999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.62  E-value=0.00068  Score=53.63  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...++.++||||+||||.+--|+..+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456889999999999999888877665

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.00064  Score=51.06  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|+.|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            388999999999999999876

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.58  E-value=0.00054  Score=53.48  Aligned_cols=21  Identities=48%  Similarity=0.675  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~  128 (229)
                      -++||.|..||||||+.+++.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999774

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00027  Score=55.73  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.+|+|-|+-||||||+++.|...+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999988764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.57  E-value=0.00076  Score=53.13  Aligned_cols=29  Identities=31%  Similarity=0.376  Sum_probs=25.3

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .-.+|.++-|.|.+|||||||.+.|.-.+
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34688999999999999999999998655

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.00066  Score=53.68  Aligned_cols=24  Identities=50%  Similarity=0.750  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|.||+|+||||+.++|+..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            378999999999999999999887

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.55  E-value=0.00047  Score=52.57  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 027060          110 VGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      |+|+|...+|||||++.|++.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.00071  Score=53.59  Aligned_cols=24  Identities=42%  Similarity=0.681  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.+.||.|+||||+.++|++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            367999999999999999999875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.00075  Score=50.66  Aligned_cols=22  Identities=14%  Similarity=0.234  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++++|..|+|||||++.+.+-
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3899999999999999988764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.0006  Score=53.26  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=23.4

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +++|.++.|.|++|||||||.-.++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            77999999999999999999977654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00074  Score=53.04  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +.|.||+|+||||++++|+..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00072  Score=50.52  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00078  Score=50.83  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.49  E-value=0.00051  Score=55.82  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|.+|+|||||++.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999953

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00081  Score=52.61  Aligned_cols=21  Identities=48%  Similarity=0.650  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      ++||.|..||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            799999999999999998753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.46  E-value=0.00084  Score=55.96  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.-+.++||+|||||.|.|.|+..+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            345667999999999999999999875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.00095  Score=49.74  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987775

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.41  E-value=0.0009  Score=53.10  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -+|||+|...+|||||++.|++..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            469999999999999999998864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.40  E-value=0.00095  Score=51.43  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|+|-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998775

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.36  E-value=0.001  Score=56.00  Aligned_cols=27  Identities=33%  Similarity=0.457  Sum_probs=23.5

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+.-++||.|+.|+|||||+..|...+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.36  E-value=0.00096  Score=50.58  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=26.8

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...+|.+++|-|+=|||||||.|.++.-+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            457899999999999999999999988764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.35  E-value=0.001  Score=52.76  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +...+++++||+|+||||.+--|+..+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999877776665

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00099  Score=49.65  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++++|.+|+|||||++.+.+-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0011  Score=49.90  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|++|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4889999999999999987764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0011  Score=51.99  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=24.4

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      |++|.++.|.|++|||||||.-.++..
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999999888753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=49.67  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999998766

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.30  E-value=0.0017  Score=51.22  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...+.|.||.|+||||+++.|+..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            35789999999999999999999886

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.29  E-value=0.0012  Score=51.17  Aligned_cols=25  Identities=16%  Similarity=0.407  Sum_probs=22.2

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      +++|+++.|.|++|+|||||+.-++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999985443

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.29  E-value=0.0011  Score=52.28  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=22.9

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +++|.++.|.|++|||||||.--++-
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            67999999999999999999876543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0016  Score=53.02  Aligned_cols=27  Identities=33%  Similarity=0.594  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...-+.|.||+|||||+|.+.|+..+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            345678999999999999999999875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0011  Score=49.34  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999876

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.28  E-value=0.0011  Score=52.36  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.++.|.||.|+|||||++.++....
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            567899999999999999998877654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.28  E-value=0.0013  Score=49.97  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998876

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.25  E-value=0.0013  Score=51.85  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=25.3

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +++|.++.|.|++|+|||||+.-++-...
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            77999999999999999999977766543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0014  Score=48.91  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988774

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0012  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0013  Score=49.38  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998863

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0014  Score=48.86  Aligned_cols=21  Identities=38%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998876

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.21  E-value=0.0013  Score=52.96  Aligned_cols=25  Identities=44%  Similarity=0.648  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .-+.|.||.|||||+|.+.|+....
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccc
Confidence            3478999999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.21  E-value=0.0013  Score=51.15  Aligned_cols=28  Identities=18%  Similarity=0.392  Sum_probs=24.7

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +++|+++.|.|++|+|||||+--++--.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998776533

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0012  Score=49.34  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998775

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0015  Score=48.75  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998876

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0015  Score=48.59  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999888764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0015  Score=49.60  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|+.|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            388999999999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.15  E-value=0.0013  Score=49.29  Aligned_cols=22  Identities=32%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      -.++|+|+.|+|||||++.|.+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999998866

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.12  E-value=0.0017  Score=48.03  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998876

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0017  Score=48.69  Aligned_cols=21  Identities=43%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|++|+|||||++.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999987765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0016  Score=50.98  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.|.||+|+||||+.++|+..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67899999999999999988765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.10  E-value=0.0011  Score=53.42  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=29.0

Q ss_pred             cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .|+++..=+.+|+++.|.|++|+|||||+.-|+--
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            46666555889999999999999999998888753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0018  Score=48.85  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988873

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0017  Score=48.94  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .+.|+|.+|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999888764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0016  Score=53.97  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |.=+.|.+|+..+|+|+.|+|||||+..|+....
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            5668899999999999999999999999988553

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0016  Score=48.78  Aligned_cols=23  Identities=43%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++|+|..|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999987743

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0025  Score=48.39  Aligned_cols=31  Identities=29%  Similarity=0.274  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      .+.|+|..|+|||||++.+. ......|+-|.
T Consensus         4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG~   34 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKGI   34 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHHSCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHh-cCCCCCCeeee
Confidence            58899999999999999994 34334477773

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0012  Score=56.98  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .|+|+|..|+|||||++.|.|.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0018  Score=49.67  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            3899999999999999988763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0019  Score=48.44  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999988763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0021  Score=47.97  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999987764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.002  Score=48.45  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998775

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0019  Score=52.57  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=24.7

Q ss_pred             ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +....-+.|.||+|+|||+|.+.|++.+.
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            44455688999999999999999999875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.97  E-value=0.0021  Score=51.93  Aligned_cols=24  Identities=46%  Similarity=0.643  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.|.||.|+|||+|.+.|+..+.
T Consensus        44 giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCChhHHHHHHHHHcC
Confidence            478999999999999999999765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.0021  Score=50.18  Aligned_cols=23  Identities=35%  Similarity=0.676  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.|.||.|+||||++++|+..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67999999999999999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.93  E-value=0.0031  Score=47.36  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      .+.|+|..|+|||||++-+.....   |+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~---~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHE---AGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHS---CCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCC---CCccE
Confidence            489999999999999999877666   77774

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0024  Score=47.72  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5799999999999999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0025  Score=47.62  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|+.|+|||||++-+.+-
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999988863

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0024  Score=48.33  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999887763

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.0019  Score=50.99  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.|.||+|+||||+.+.++..+.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhhc
Confidence            67999999999999999998763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.87  E-value=0.0015  Score=51.99  Aligned_cols=24  Identities=46%  Similarity=0.653  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ++.|.||.|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456679999999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.86  E-value=0.0014  Score=49.54  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +--.++|+|+.|+|||||++.+.+
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            344588999999999999998755

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.002  Score=48.39  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+.|+|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            58899999999999999988743

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.79  E-value=0.0027  Score=52.31  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .+-.+||||.+-+|||||++.|++-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC
Confidence            3456999999999999999999985

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0029  Score=47.17  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999997765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0031  Score=47.15  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .+.|+|..|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998876

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.72  E-value=0.0017  Score=54.20  Aligned_cols=25  Identities=28%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .-+.|+|+.|+|||||+|.|.++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            3579999999999999999999985

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0033  Score=46.73  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.0039  Score=50.34  Aligned_cols=24  Identities=38%  Similarity=0.606  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -+.|.||+|+|||+|.+.++....
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eeEEecCCCCCchHHHHHHHHHhC
Confidence            478999999999999999999764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.69  E-value=0.0033  Score=46.94  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .+.|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0019  Score=48.45  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=9.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987665

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0035  Score=47.59  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999988765

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.57  E-value=0.0044  Score=52.76  Aligned_cols=31  Identities=32%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             eeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      -.++++..+.|.||.|+|||||.+.|++.+.
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3567888999999999999999999999886

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0041  Score=47.08  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++++|..|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999987764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.54  E-value=0.0037  Score=49.26  Aligned_cols=22  Identities=27%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++||.|.-||||||..++|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0018  Score=48.58  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999997755

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.47  E-value=0.004  Score=47.07  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .++|+|..|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999987665

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.46  E-value=0.0038  Score=49.04  Aligned_cols=30  Identities=23%  Similarity=0.221  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      -.+.|+|.+|+|||||++-+....  ..|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~--~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILH--VVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH--CCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC--cCCCCC
Confidence            368999999999999999874322  227777

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.45  E-value=0.0028  Score=47.44  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      -.+.|+|++|+|||||++.+.+
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.40  E-value=0.0042  Score=54.34  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      =+.++||+|||||-|.|.|++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999885

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0057  Score=49.78  Aligned_cols=41  Identities=24%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e-EecCCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQD  146 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~g~~  146 (229)
                      =|+.|.++-|.||+|+|||||+-.++....   ...+ . +++.+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q---~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEEcccc
Confidence            467899999999999999999877777665   3334 3 666653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.39  E-value=0.0061  Score=46.78  Aligned_cols=31  Identities=29%  Similarity=0.321  Sum_probs=23.9

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      ++.--+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            44444555 68889999999999999986553

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.38  E-value=0.0051  Score=52.94  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=24.8

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.-++.|.||.||||||++..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            3567899999999999999999999775

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0046  Score=47.07  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999877653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.32  E-value=0.0031  Score=52.14  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .|||+|.+-+|||||++.|+|.-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999998864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.0079  Score=45.18  Aligned_cols=31  Identities=23%  Similarity=0.160  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (229)
                      .+.|+|..|+|||||++.+..-.....|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            4789999999999999998765443346666

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0056  Score=48.90  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=23.3

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+|+++.|.|+.|+|||||+-.|+--+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            369999999999999999998776643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.15  E-value=0.0047  Score=47.32  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +||+|.-.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998854

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.12  E-value=0.0068  Score=49.28  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -.+||||-.-+|||||++.|++.-
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCC
Confidence            468999999999999999999753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.09  E-value=0.0088  Score=48.85  Aligned_cols=41  Identities=20%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--EecCCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQD  146 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~g~~  146 (229)
                      -++.|.++-|.||+|+|||||+-.++....   ...|.  +++.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q---~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHh---cCCCEEEEEECCc
Confidence            577999999999999999999866666555   44553  667664

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0062  Score=47.76  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++|=|.-||||||+++.|.-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4789999999999999999998764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.004  Score=51.13  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -+|+|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            479999999999999999999854

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.88  E-value=0.0092  Score=48.66  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=32.6

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e-EecCCC
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQD  146 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~g~~  146 (229)
                      =|+.|.++-|.|++|||||||+-.++....   ...| . +++.+.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq---k~g~~v~yiDtE~   95 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEH   95 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHH---hCCCEEEEEECCc
Confidence            457899999999999999999988888766   4445 3 666653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.84  E-value=0.0085  Score=46.59  Aligned_cols=21  Identities=38%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 027060          110 VGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      +||+|.-++|||||+..|...
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            899999999999999999654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0096  Score=49.47  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .-.+.++||+|+|||.|.+.|+..+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc
Confidence            33688999999999999999999875

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.75  E-value=0.0087  Score=49.06  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=28.2

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      |.=+.+.+|+.++|+|+.|+|||||+..|+.-
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            55688999999999999999999998777665

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.70  E-value=0.013  Score=44.73  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .|.-+.|.|++|+|||||.-.+..
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            478899999999999999865543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.47  E-value=0.0078  Score=49.26  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++++|.-.||||||++.|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999953

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.0089  Score=47.12  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ++.|.|.=|||||||++-|...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6889999999999999988663

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.36  E-value=0.0099  Score=48.44  Aligned_cols=22  Identities=36%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      -++|+|+.|+|||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            3799999999999999999654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.014  Score=45.21  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..+.|.||+|+||||+.+.++..+.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcc
Confidence            3588999999999999999998774

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.17  E-value=0.019  Score=43.59  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=22.6

Q ss_pred             ccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus        97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      ++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           6 LHGVLVDV-YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            33433333 58889999999999999885543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.17  E-value=0.0092  Score=48.52  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .++++|.-.||||||++.|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999953

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.015  Score=45.81  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.|.||+|+||||+.++++..+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Confidence            467889999999999999998775

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.04  E-value=0.013  Score=48.02  Aligned_cols=21  Identities=29%  Similarity=0.446  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 027060          109 IVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      -++|+|+.|||||||+..|.-
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            379999999999999999853

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.01  E-value=0.017  Score=44.62  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +||+|.-.+|||||++.|.+.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            7999999999999999998864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.78  E-value=0.019  Score=46.50  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ..+++|.|.-|.|||||.+.+..-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999998764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.73  E-value=0.014  Score=44.92  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      -+||+|.-.+|||||+..|+|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48999999999999999998744

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.48  E-value=0.024  Score=47.32  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..++| ++.+.||+|+|||.|.+.|++.+.
T Consensus       120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         120 RYASG-MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence            33443 566689999999999999999874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.02  Score=48.59  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHH-HHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEV-VRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L-~gll~  132 (229)
                      .-+.|+|++|||||++++.| ..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~   76 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLL   76 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHh
Confidence            35899999999999999754 44444

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.033  Score=43.12  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .-+.|+|++|.|||+++.-|+..+.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH
Confidence            3578999999999999999988664

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.85  E-value=0.024  Score=46.33  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=28.8

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |.=+.|.+|+.++|+|+.|+|||+|+..+.-...
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~   92 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQ   92 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred             eccccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence            5668899999999999999999999987655444

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.033  Score=45.22  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .-+.|||+.|+|||++++-++..+.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH
Confidence            3578999999999999999988654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.78  E-value=0.033  Score=47.15  Aligned_cols=23  Identities=30%  Similarity=0.710  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.++||+|+|||-|.|.|+.++.
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eeeeCCCCccHHHHHHHHHhhcc
Confidence            67889999999999999998864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.71  E-value=0.03  Score=43.60  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +.|.||.|+|||-|+.+++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999988764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.65  E-value=0.077  Score=37.86  Aligned_cols=41  Identities=7%  Similarity=0.110  Sum_probs=31.2

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCc--e-EecCCCHH
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA--S-SFDSQDPK  148 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G--~-~~~g~~~~  148 (229)
                      ++|-.+.+-|-+|||||||.+.|.-.+.   - .+|  . .++|.++.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~---q~~G~R~vtll~~~ni~   48 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL---QFGGGRYYKIFEHNNKT   48 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT---TSCSCCCEEECCCTTCH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH---HhcCCcceEEecCCCHH
Confidence            4688899999999999999999977665   4 344  2 56776543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.64  E-value=0.0097  Score=47.53  Aligned_cols=33  Identities=15%  Similarity=0.099  Sum_probs=19.9

Q ss_pred             CCCCCCCCCchhhhhhccCCccEEEecCCeeee
Q 027060          181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  213 (229)
Q Consensus       181 ~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlL  213 (229)
                      ..++.++.+|+..+.++..++++|++|||+..|
T Consensus       129 ~~LSGGqkQRvaiAraL~~~P~illlDEPts~L  161 (232)
T d2awna2         129 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL  161 (232)
T ss_dssp             -----------CHHHHHHTCCSEEEEESTTTTS
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence            356789999999999999999999999998654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.61  E-value=0.036  Score=45.91  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       107 Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .-.+.++||+|+|||.|.+.|+..+
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHh
Confidence            3367899999999999999999987

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.46  E-value=0.061  Score=44.93  Aligned_cols=29  Identities=24%  Similarity=0.225  Sum_probs=24.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (229)
                      +|.|=|+-|+||||+++.|...+.   ...+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~---~~~~v   36 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS---GGSPT   36 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG---CSSCE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc---cCCCe
Confidence            578899999999999999999876   54444

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.44  E-value=0.025  Score=46.39  Aligned_cols=31  Identities=13%  Similarity=0.159  Sum_probs=26.7

Q ss_pred             ceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus        99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      |.-+.+.+|+.++|+|+.|+|||||+.-+..
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            5668899999999999999999999865543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.26  E-value=0.0066  Score=48.50  Aligned_cols=32  Identities=13%  Similarity=0.072  Sum_probs=28.2

Q ss_pred             CCCCCCCCchhhhhhccCCccEEEecCCeeee
Q 027060          182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  213 (229)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlL  213 (229)
                      ..+.++.+|+..+.++..++++|++|||+..|
T Consensus       145 ~LSGGqkQRvaIAraL~~~P~lLllDEPTs~L  176 (230)
T d1l2ta_         145 QLSGGQQQRVAIARALANNPPIILADQPTGAL  176 (230)
T ss_dssp             GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred             hCCHHHHHHHHHHhhhhcCCCEEEecCCcccc
Confidence            46778899999999999999999999998654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.10  E-value=0.037  Score=43.20  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 027060          110 VGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +||+|.-++|||||+..|..
T Consensus         6 i~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHH
Confidence            89999999999999998854

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=91.92  E-value=0.0073  Score=48.54  Aligned_cols=32  Identities=16%  Similarity=0.112  Sum_probs=28.2

Q ss_pred             CCCCCCCCchhhhhhccCCccEEEecCCeeee
Q 027060          182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  213 (229)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlL  213 (229)
                      .++.++.+|+..+.++..++++|++|+|+..|
T Consensus       139 ~LSGGqkQRv~IAraL~~~P~iLllDEPt~~L  170 (240)
T d1g2912         139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL  170 (240)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTS
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEecCCCccc
Confidence            46778999999999999999999999998654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.80  E-value=0.0093  Score=47.89  Aligned_cols=30  Identities=17%  Similarity=0.355  Sum_probs=24.5

Q ss_pred             CCchhhhhhccCCccE-----EEecCCeeeecccC
Q 027060          188 GDPVEDDILVGLQHKV-----VIVDGNYLFLDGGV  217 (229)
Q Consensus       188 ~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP~  217 (229)
                      .++.+..++.|+++|+     |+.+|++++||||+
T Consensus       130 ~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt  164 (239)
T d1v43a3         130 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  164 (239)
T ss_dssp             TTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hcCChhhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence            4555666778888777     99999999999995

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.69  E-value=0.061  Score=42.14  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      ++++|.-.+|||||+..|+...
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            7999999999999999997654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.67  E-value=0.01  Score=47.34  Aligned_cols=39  Identities=18%  Similarity=0.170  Sum_probs=28.3

Q ss_pred             CCchhhhhhccCCccE-----EEecCCeeeecccC----HHHHHHHHh
Q 027060          188 GDPVEDDILVGLQHKV-----VIVDGNYLFLDGGV----WKDVSSMFD  226 (229)
Q Consensus       188 ~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP~----~~~l~~~l~  226 (229)
                      .++....++.|+++|+     |+.+|++|+||||+    ...-.++++
T Consensus       121 ~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~  168 (229)
T d3d31a2         121 LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE  168 (229)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHH
T ss_pred             HhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHH
Confidence            4555667777887777     99999999999995    444444443

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.55  E-value=0.041  Score=45.96  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .|.|=|+-|+||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            588999999999999999986554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.32  E-value=0.044  Score=38.18  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=20.2

Q ss_pred             ecCCcEEEEEcCCCCcHHHHH-HHHHHH
Q 027060          104 VNVKHIVGLAGPPGAGKSTLA-AEVVRR  130 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKSTLl-k~L~gl  130 (229)
                      +++|+.+.|.+|.|||||+.+ ..+...
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~   31 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAE   31 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHH
Confidence            468999999999999999544 343333

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.18  E-value=0.037  Score=44.26  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLA-AEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLl-k~L~gll  131 (229)
                      -+.|+|+.||||||.+ ..+.-++
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHH
Confidence            4679999999999754 4444443

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.17  E-value=0.047  Score=45.64  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.|=|+=||||||+++.|...+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            588999999999999999998775

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.06  E-value=0.01  Score=47.67  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=24.8

Q ss_pred             CCchhhhhhccCCccE-----EEecCCeeeecccCH
Q 027060          188 GDPVEDDILVGLQHKV-----VIVDGNYLFLDGGVW  218 (229)
Q Consensus       188 ~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP~~  218 (229)
                      .++.+..++.|+++|+     |+.+|++++||||+.
T Consensus       134 ~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~  169 (242)
T d1oxxk2         134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFS  169 (242)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred             hhCChhhCCHHHHhHHHHHhHHhhcccceeecCCcc
Confidence            3555666777887777     999999999999964

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.05  E-value=0.081  Score=42.69  Aligned_cols=30  Identities=20%  Similarity=0.451  Sum_probs=26.0

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ..++--++.|.||.++|||||+++|..++.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            345667899999999999999999999874

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.92  E-value=0.045  Score=44.21  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHHh
Q 027060          109 IVGLAGPPGAGKSTLA-AEVVRRI  131 (229)
Q Consensus       109 ~v~IiGpNGsGKSTLl-k~L~gll  131 (229)
                      .+.|.|+.||||||.+ ..++-++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHH
Confidence            3678899999999765 4444444

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.70  E-value=0.081  Score=41.14  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=27.0

Q ss_pred             eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+++--++.|.||.++|||++...|..++.
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            357788999999999999999999999886

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.70  E-value=0.086  Score=44.31  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVV  128 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~  128 (229)
                      .+.++.|.|+.|+||||++..+.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHH
Confidence            36799999999999999885443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=90.55  E-value=0.0095  Score=47.83  Aligned_cols=29  Identities=17%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CchhhhhhccCCccE-----EEecCCeeeecccC
Q 027060          189 DPVEDDILVGLQHKV-----VIVDGNYLFLDGGV  217 (229)
Q Consensus       189 ~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP~  217 (229)
                      ++.+..++.|+++||     |+.+|++|+||||+
T Consensus       135 ~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt  168 (240)
T d3dhwc1         135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT  168 (240)
T ss_dssp             SSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGG
T ss_pred             hCChhhCCHHHHHHHHHhhhhccCCCeEEecccc
Confidence            444455666777766     99999999999995

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.17  E-value=0.013  Score=47.12  Aligned_cols=32  Identities=13%  Similarity=0.151  Sum_probs=28.0

Q ss_pred             CCCCCCCCchhhhhhccCCccEEEecCCeeee
Q 027060          182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  213 (229)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlL  213 (229)
                      ..+.++.+++..+.++..++++|++|+|+..|
T Consensus       126 ~LSGG~kQRvaiAral~~~P~illlDEPts~L  157 (240)
T d2onka1         126 RLSGGERQRVALARALVIQPRLLLLDEPLSAV  157 (240)
T ss_dssp             GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred             hCCHHHHHHHHHHHHHhccCCceEecCccccC
Confidence            45678899999999999999999999998654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.07  E-value=0.092  Score=43.54  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             eeeec-CCcEEEEEcCCCCcHHHHH
Q 027060          101 ASNVN-VKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus       101 sl~i~-~Ge~v~IiGpNGsGKSTLl  124 (229)
                      |.++. .|++..+.|.+|+|||||-
T Consensus         7 san~~~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1           7 SANVGKEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred             ccccCCCCCEEEEEccCCCCccccc
Confidence            34444 5899999999999999975

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.97  E-value=0.077  Score=43.89  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             eeee-cCCcEEEEEcCCCCcHHHHH
Q 027060          101 ASNV-NVKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus       101 sl~i-~~Ge~v~IiGpNGsGKSTLl  124 (229)
                      |.++ +.|++..+.|.+|+|||||-
T Consensus         7 san~~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1           7 SANVGEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECTTSCEEEEECSTTSSHHHHH
T ss_pred             ccccCCCCCEEEEEccCCCCcccce
Confidence            4444 36899999999999999976

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.93  E-value=0.084  Score=42.38  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      .+-.++|+|-+-+|||||++.|.|.-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            44569999999999999999999843

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=89.88  E-value=0.013  Score=46.90  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=24.3

Q ss_pred             hhhhccCCccE-----EEecCCeeeecccC----HHHHHHHHh
Q 027060          193 DDILVGLQHKV-----VIVDGNYLFLDGGV----WKDVSSMFD  226 (229)
Q Consensus       193 ~~l~~~~~~rv-----Li~d~~~LlLDEP~----~~~l~~~l~  226 (229)
                      ..++.|+++|+     |+.+|++|+||||+    .....++++
T Consensus       138 ~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~  180 (240)
T d1ji0a_         138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE  180 (240)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHH
Confidence            34556666666     99999999999995    455555544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.62  E-value=0.09  Score=41.62  Aligned_cols=21  Identities=29%  Similarity=0.422  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 027060          110 VGLAGPPGAGKSTLAAEVVRR  130 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gl  130 (229)
                      ++|+|.-++|||||+..|+-.
T Consensus         9 i~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            799999999999999888654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.18  E-value=0.075  Score=42.34  Aligned_cols=29  Identities=34%  Similarity=0.413  Sum_probs=21.9

Q ss_pred             ecCCcEEEEEcCCCCcHHH--HHHHHHHHhc
Q 027060          104 VNVKHIVGLAGPPGAGKST--LAAEVVRRIN  132 (229)
Q Consensus       104 i~~Ge~v~IiGpNGsGKST--Llk~L~gll~  132 (229)
                      +.+|+.+.|.+|.|||||+  |..++...+.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~   36 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK   36 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4589999999999999996  3355554443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.13  E-value=0.14  Score=39.17  Aligned_cols=27  Identities=7%  Similarity=-0.006  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+--+.|.||+|+||||+.+.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            355788999999999999999998774

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.90  E-value=0.081  Score=44.28  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 027060          110 VGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~g  129 (229)
                      +||+|.-|+|||||+..|.-
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999964

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.75  E-value=0.11  Score=43.07  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=17.8

Q ss_pred             CCcEEEEEcCCCCcHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLl  124 (229)
                      .|++..+-|-+|+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999997

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.60  E-value=0.021  Score=46.20  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=28.0

Q ss_pred             CCCCCCCCchhhhhhccCCccEEEecCCeeee
Q 027060          182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  213 (229)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlL  213 (229)
                      ..+.++.+++..+.++...+++|++|+|+..|
T Consensus       149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gL  180 (258)
T d1b0ua_         149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSAL  180 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred             cccHHHHHHHHHHHHHhcCCCEEEeccccccC
Confidence            46788999999999999999999999997643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.47  E-value=0.086  Score=41.85  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 027060          110 VGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~g  129 (229)
                      ++|+|.-++|||||+..|.-
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHH
Confidence            89999999999999998854

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.25  E-value=0.11  Score=44.10  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 027060          110 VGLAGPPGAGKSTLAAEVVRRI  131 (229)
Q Consensus       110 v~IiGpNGsGKSTLlk~L~gll  131 (229)
                      +.|||++|.|||+++.-|+..+
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999998777644

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.09  E-value=0.12  Score=36.36  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=16.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAE  126 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~  126 (229)
                      ..++..|.+|.|||||+++-.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~   27 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPA   27 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHH
Confidence            345677899999999997643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.07  E-value=0.024  Score=45.65  Aligned_cols=46  Identities=17%  Similarity=0.114  Sum_probs=33.6

Q ss_pred             CCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060          182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  227 (229)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~  227 (229)
                      .++.++.+++..+.++..++++|++|+|+..||.-...++.+++..
T Consensus       150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~  195 (254)
T d1g6ha_         150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE  195 (254)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHH
Confidence            4556667777777777777777777777777777778888887754

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.97  E-value=0.17  Score=46.29  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=24.9

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.+.+.|.|.+|||||+-.|.|...+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999988664

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=87.87  E-value=0.18  Score=45.96  Aligned_cols=28  Identities=21%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.+.|.|.|.+|||||+-.|.|...+.
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999877653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.21  E-value=0.16  Score=40.19  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...-|.|.|+.|+||+++.+.|...-.
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            345689999999999999999987554

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.89  E-value=0.22  Score=45.54  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=24.7

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.+.|.|.|.+|||||+-.|.|...+.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999988763

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.29  E-value=0.036  Score=42.86  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             hhhhhccCCccE-----EEecCCeeeecccCH
Q 027060          192 EDDILVGLQHKV-----VIVDGNYLFLDGGVW  218 (229)
Q Consensus       192 ~~~l~~~~~~rv-----Li~d~~~LlLDEP~~  218 (229)
                      ...++.|+++|+     ++.+|++++||||+.
T Consensus       123 ~~~LSgG~~qrv~ia~al~~~~~llllDEPt~  154 (200)
T d1sgwa_         123 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVV  154 (200)
T ss_dssp             GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred             cCcCCCcHHHHHHHHHHHhcCCCEEEEcCccc
Confidence            345666776666     889999999999963

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=85.91  E-value=0.25  Score=45.79  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.+.|.|.|.+|||||+-.|.|...+.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999988764

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.71  E-value=0.32  Score=35.04  Aligned_cols=25  Identities=32%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCcHHH-HHHHHHHHh
Q 027060          107 KHIVGLAGPPGAGKST-LAAEVVRRI  131 (229)
Q Consensus       107 Ge~v~IiGpNGsGKST-Llk~L~gll  131 (229)
                      |.+..|+||=.||||| |++.+....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            6788899999999999 777776654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=84.78  E-value=0.26  Score=45.55  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=24.6

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      .+.+.+.|.|.+|||||.-.|.|...+.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999888764

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=84.56  E-value=0.33  Score=44.40  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=25.0

Q ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      ...+.+.|.|.+|||||+-.|.|...+.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=84.24  E-value=0.047  Score=43.43  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             hhhhhccCCccE-----EEecCCeeeecccC
Q 027060          192 EDDILVGLQHKV-----VIVDGNYLFLDGGV  217 (229)
Q Consensus       192 ~~~l~~~~~~rv-----Li~d~~~LlLDEP~  217 (229)
                      ...++.|+++|+     |+.+|++++||||+
T Consensus       131 ~~~lSgG~~qrv~iA~al~~~p~illLDEPt  161 (238)
T d1vpla_         131 VSTYSKGMVRKLLIARALMVNPRLAILDEPT  161 (238)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence            344555666665     99999999999995

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.73  E-value=0.37  Score=35.88  Aligned_cols=25  Identities=12%  Similarity=0.212  Sum_probs=22.2

Q ss_pred             cEEEEEcCC-CCcHHHHHHHHHHHhc
Q 027060          108 HIVGLAGPP-GAGKSTLAAEVVRRIN  132 (229)
Q Consensus       108 e~v~IiGpN-GsGKSTLlk~L~gll~  132 (229)
                      .++-|.|-+ |+||||+.-.|+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            468899997 9999999999999886

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=82.06  E-value=0.054  Score=43.14  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=18.7

Q ss_pred             hhccCCccE-----EEecCCeeeecccC
Q 027060          195 ILVGLQHKV-----VIVDGNYLFLDGGV  217 (229)
Q Consensus       195 l~~~~~~rv-----Li~d~~~LlLDEP~  217 (229)
                      ++.|+++||     |+.+|++++||||+
T Consensus       140 LSGGqkQRv~iARal~~~p~ililDEpt  167 (242)
T d1mv5a_         140 ISGGQRQRLAIARAFLRNPKILMLDEAT  167 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            556666655     88999999999996

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=0.054  Score=43.39  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=19.0

Q ss_pred             hhhccCCccE-----EEecCCeeeecccC
Q 027060          194 DILVGLQHKV-----VIVDGNYLFLDGGV  217 (229)
Q Consensus       194 ~l~~~~~~rv-----Li~d~~~LlLDEP~  217 (229)
                      .++.|+++||     |+.+|++++||||+
T Consensus       151 ~LSGGqkQRvaiARal~~~p~ililDEpT  179 (251)
T d1jj7a_         151 QLSGGQRQAVALARALIRKPCVLILDDAT  179 (251)
T ss_dssp             SSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             cCChhHceEEEEeeccccCCcEEEecCcC
Confidence            3555666555     99999999999995

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.67  E-value=0.22  Score=38.52  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~g  129 (229)
                      .|+-+.|++|.|+|||+..-+..-
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHHH
Confidence            577888999999999986654443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.87  E-value=0.25  Score=37.21  Aligned_cols=19  Identities=42%  Similarity=0.405  Sum_probs=15.9

Q ss_pred             CCcEEEEEcCCCCcHHHHH
Q 027060          106 VKHIVGLAGPPGAGKSTLA  124 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLl  124 (229)
                      .|.-+.|.+|.|||||+..
T Consensus        39 ~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHH
Confidence            5667889999999999863

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=80.75  E-value=0.64  Score=34.49  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      |+.+|+|.|-|  ||||.-.+|..++.
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~   25 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILS   25 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHH
Confidence            56799999998  69999999999997

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.73  E-value=0.49  Score=33.70  Aligned_cols=27  Identities=37%  Similarity=0.363  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (229)
Q Consensus       106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~  132 (229)
                      +|.+..|+||=.|||||-|=.......
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~   27 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQ   27 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHH
Confidence            588999999999999996655444443