Citrus Sinensis ID: 027072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEKK
Secondary Structure (PSIPRED)
cccccccccEEEEccEEEEHHHHccccccccccHHHHHHHHHHHHHccccccEEEEccHHHHHHHccccHHHHHHHHcccccccccEEEEEEEcccccccccccccEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccEEEEHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHcccHHHHHHHcccccccccEEEEEEEcccccccccccccEEEEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgksaaddkilsyndvvlrrsdldilsgpyflndRIIEFYFSYLSSClvsqdillvppsIAFWilncpdatylkefieplklpekklvifpvndnddmslaeggshWSLIVYErngnvfvhhdsnhRMNKIKARKLFSAVVGfmgdstsasngkyldcvdspqqtngydcGVYVIAIARAICCWyessehkdaegMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEKK
Flexible Loop (DISEMBL)
mgksaaddkilsyndvvlrrsdLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEKK
Low Complexity Region (SEG)
MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEKK
Disordered region (IsUnstruct)
*********ILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIK******
Disordered Region (DISOPRED)
******D*****YNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLME**
Disordered Region (DISEMBL)
MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEKK
Disordered Region (DISPRO)
*****ADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLME**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9LSS7	226	NEDD8-specific protease 1	yes	no	0.973	0.982	0.559	2e-70
Q5FVJ8	217	Sentrin-specific protease	yes	no	0.903	0.949	0.349	7e-29
Q9D2Z4	221	Sentrin-specific protease	yes	no	0.903	0.932	0.349	8e-29
Q96LD8	212	Sentrin-specific protease	yes	no	0.903	0.971	0.331	5e-28
Q54XR2	243	Probable sentrin-specific	yes	no	0.758	0.711	0.331	2e-22
O42980	420	NEDD8-specific protease 1	yes	no	0.714	0.388	0.268	3e-09
O13612	415	NEDD8-specific protease 2	no	no	0.877	0.481	0.223	5e-08
Q02724	621	Ubiquitin-like-specific p	yes	no	0.679	0.249	0.233	1e-05
Q91ZX6	588	Sentrin-specific protease	no	no	0.723	0.280	0.215	4e-05
Q94F30	489	Ubiquitin-like-specific p	no	no	0.298	0.139	0.3	7e-05

>sp|Q9LSS7|RUBP1_ARATH NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 165/227 (72%), Gaps = 5/227 (2%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MG ++ DDKILSY DVVLRRSDLDIL+GP FLNDR+IEFY S+LS+   S  I L+PPSI
Sbjct: 1   MGNTSDDDKILSYEDVVLRRSDLDILNGPIFLNDRVIEFYLSFLSTVHSSTTISLIPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI NCPD  YLK+F++PL L +K L+I PVNDN ++ +AEGG HWSL+VY +  N FV
Sbjct: 61  AFWISNCPDTEYLKDFMKPLNLRDKDLLILPVNDNSNVEVAEGGLHWSLLVYYKEANTFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   +N+  A++LF AV  F+    S  +  Y +C D+PQQ NGYDCGV+++A AR 
Sbjct: 121 HHDSYMGVNRWSAKQLFKAVSPFV----SNGDASYKECTDTPQQKNGYDCGVFLLATARV 176

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           IC W+ S   K+ + +WF+ VKE V   +V+ +R+EIL LIK LM +
Sbjct: 177 ICEWFSSGGMKNRDELWFANVKETVPD-LVNHLREEILALIKKLMSE 222

Processes the pre-form of the ubiquitin-like protein NEDD8/RUB1. Has the capacity to discriminate between NEDD8/RUB1 and ubiquitin. Has no SUMO protease activity.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

>sp|Q5FVJ8|SENP8_RAT Sentrin-specific protease 8 OS=Rattus norvegicus GN=Senp8 PE=2 SV=1

 Score =  127 bits (318), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 20/226 (8%)

Query: 7   DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCL---VSQDILLVPPSIAFW 63
           D  +LSY D +LR+SD+ +L  P +LND II F F Y +S      S  +  + P +  +
Sbjct: 2   DPVVLSYMDSLLRQSDVSLLDPPNWLNDHIIGFAFEYFASSQFHDCSDHVCFISPEVTQF 61

Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           I        +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+D
Sbjct: 62  IKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119

Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
           S+ R N I A+++   +  F+G     S G  L  V+  +P Q N YDCG+YVI    A+
Sbjct: 120 SHSRSNSIHAKQVAEKLKAFLG-----SKGDKLVFVEEKAPAQQNSYDCGMYVICNTEAL 174

Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           C   ++   +  E        + +T T +++ R E   LI  L +K
Sbjct: 175 C---QNLFRRQPESPL-----QLLTPTYITKKRGEWKDLIARLAKK 212

Protease that catalyzes two essential functions in the NEDD8 pathway: processing of full-length NEDD8 to its mature form and deconjugation of NEDD8 from targeted proteins such as cullins or p53.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9D2Z4|SENP8_MOUSE Sentrin-specific protease 8 OS=Mus musculus GN=Senp8 PE=1 SV=2

 Score =  127 bits (318), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 20/226 (8%)

Query: 7   DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCL---VSQDILLVPPSIAFW 63
           D  +LSY D +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +
Sbjct: 2   DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVCFISPEVTQF 61

Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           I        +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+D
Sbjct: 62  IKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119

Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
           S+ R N I A+++   +  F+G     S G  L  V+  +P Q N YDCG+YVI    A+
Sbjct: 120 SHSRSNSIHAKQVAEKLKAFLG-----SKGDKLVFVEEKAPAQENSYDCGMYVICNTEAL 174

Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           C   +S   +  E        + +T T +++ R E   LI  L +K
Sbjct: 175 C---QSLFRRQPESPL-----QLLTPTYITKKRGEWKDLIARLAKK 212

Protease that catalyzes two essential functions in the NEDD8 pathway: processing of full-length NEDD8 to its mature form and deconjugation of NEDD8 from targeted proteins such as cullins or p53.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q96LD8|SENP8_HUMAN Sentrin-specific protease 8 OS=Homo sapiens GN=SENP8 PE=1 SV=1

 Score =  124 bits (311), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 20/226 (8%)

Query: 7   DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
           D  +LSY D +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +
Sbjct: 2   DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQF 61

Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           I    +   +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+D
Sbjct: 62  IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119

Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
           S+ R N + A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI    A+
Sbjct: 120 SHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEAL 174

Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           C   ++   +  E +      + +T   +++ R E   LI  L +K
Sbjct: 175 C---QNFFRQQTESLL-----QLLTPAYITKKRGEWKDLITTLAKK 212

Protease that catalyzes two essential functions in the NEDD8 pathway: processing of full-length NEDD8 to its mature form and deconjugation of NEDD8 from targeted proteins such as cullins or p53.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q54XR2|SENP8_DICDI Probable sentrin-specific protease 8 OS=Dictyostelium discoideum GN=senp8 PE=3 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 14/187 (7%)

Query: 6   ADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYL------SSCLVSQDILLVPPS 59
           +D  I+SYND  + +SD++IL    +LND II FY  +L      +   +   +LL+ PS
Sbjct: 2   SDPLIVSYNDSAIYQSDINILKSNQWLNDSIISFYLEWLKDGGEDNKNKIPNQVLLLSPS 61

Query: 60  IAFWILNCPDATYLKE----FIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERN 115
           + F    C      +E    F +PL L  K+++ FP+ +N D ++  GG+HWSL+++ ++
Sbjct: 62  VVFC---CSFVESEQEIQLMFEQPLSLKTKEVIFFPLTNNRDPNVIGGGTHWSLLIFIKS 118

Query: 116 GNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGK-YLDCVDSPQQTNGYDCGVYV 174
            N F+++DS +  N   A  + S     +      +N K +L    +PQQ NGYDCG+YV
Sbjct: 119 LNKFIYYDSINSFNSSDAIFIISKFKFLLSSPPPKTNLKEFLINQKTPQQQNGYDCGLYV 178

Query: 175 IAIARAI 181
           ++I   +
Sbjct: 179 LSIIEEL 185

Protease that catalyzes two essential functions in the nedd8 pathway: processing of full-length nedd8 to its mature form and deconjugation of nedd8 from targeted proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|O42980|NEP1_SCHPO NEDD8-specific protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nep1 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 12/175 (6%)

Query: 10  ILSYNDVVLRRSDLDILSGPYFLNDRIIEF------YFSYLSSCLVSQDILLVPPSIAFW 63
           +L   DV  ++ D+D L  P +  D  I++      +  + S    + +ILL+ PS+ F 
Sbjct: 7   VLELFDVCFKQEDVDSLKKPNWFTDVSIDYVDELIEHLWFPSYPNQANEILLLRPSLVFL 66

Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           +     +    +   P KL   K +  P+ND D  +   GGSHWSL+V         ++D
Sbjct: 67  LAEAAISPEELKVALPKKLMNCKYLFMPINDLDKHAAGSGGSHWSLMVASIPDGQCYYYD 126

Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIA 178
           S         R   + V        +      ++C+   QQ NGYDCG +V A  
Sbjct: 127 SLSNGKTKDCRSALARVSDLFKKKFT------IECMPVQQQRNGYDCGAHVCAFT 175

Protease that catalyzes two essential functions in the NEDD8 pathway: processing of full-length NEDD8 to its mature form and deconjugation of NEDD8 from targeted proteins such as the pcu1, pcu2 and pcu4 cullins and other proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|O13612|NEP2_SCHPO NEDD8-specific protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nep2 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 24/224 (10%)

Query: 11  LSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV-------SQDILLVPPSIAFW 63
           L Y +V LR++D+D     Y++ D  I+F++  +   ++       SQ I L+ P++ F+
Sbjct: 71  LEYFEVSLRKNDVDHFRPGYWILDTNIDFFYEIMLRQVLLKRPKEESQQIYLLRPAMVFF 130

Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           +   P+   ++  + P    +   +  P+ND ++  + E GSHWSL+V      +  ++D
Sbjct: 131 LAQAPNPLEIESALPPAMF-DASFIFLPINDTNECGI-ESGSHWSLLVVSVEKGLGWYYD 188

Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICC 183
           S    N          +   +       + K      +PQQ N  DCG++V    R +  
Sbjct: 189 SMSNGNTNDCNLAIKNLGILLKKEFRVRHMK------TPQQINDCDCGLHVCENTRILM- 241

Query: 184 WYESSEHKDAEGMWFSFVKEQVTSTVVS--QMRKEILQLIKGLM 225
                 ++  +  +   V   +  +VV   ++RK ++++I  L+
Sbjct: 242 ------YRLLQKPYVPKVDMNLDHSVVDSVRLRKALMEVITSLL 279

Protease that catalyzes two essential functions in the NEDD8 pathway: processing of full-length NEDD8 to its mature form and deconjugation of NEDD8 from targeted proteins such as the pcu1, pcu2 and pcu4 cullins and other proteins (By similarity). Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 25/180 (13%)

Query: 4   SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF- 62
           S  + ++++ +++ +   D   L+   +LND IIEF+  Y+            P ++AF 
Sbjct: 421 SRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS--------TPNTVAFN 472

Query: 63  --WILNCPDATY--LKEFIEPLKLPEKKL--VIFPVNDNDDMSLAEGGSHWSLIVYERNG 116
             +  N  +  Y  ++ +++  K    KL  +  P+N N         SHW+L + +   
Sbjct: 473 SFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQ--------SHWALGIIDLKK 524

Query: 117 NVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV--DSPQQTNGYDCGVYV 174
               + DS        +  + + +  ++ + +  + G+  D +  D PQQ NGYDCG+YV
Sbjct: 525 KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYV 584

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SMT3 to its mature form and deconjugation of SMT3 from targeted proteins. Has an essential role in the G2/M phase of the cell cycle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 25/190 (13%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           +G    D+ + S   + + R D+  L   ++LND +I FY + L      Q    +    
Sbjct: 379 LGHGPPDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERSKKQGYPALHAFS 438

Query: 61  AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
            F+        Y  +K + + + L E++LV+ P++            HWSL+V +     
Sbjct: 439 TFFYPKLKSGGYQAVKRWTKGVNLFEQELVLVPIHRK---------VHWSLVVMDLRKKC 489

Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
             + DS  +    K  ++   ++ ++ D +       L+ +          + PQQ NG 
Sbjct: 490 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNTDLNLLEWTHYSMKPHEIPQQLNGS 545

Query: 169 DCGVYVIAIA 178
           DCG++    A
Sbjct: 546 DCGMFTCKYA 555

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway (By similarity). Isoform 3 activates transcription.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 12/80 (15%)

Query: 104 GSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDC----- 158
           G HW+L V     +  ++ DS + ++ +    + +A+  +MGD  +  +GK +D      
Sbjct: 378 GVHWTLAVINNRESKLLYLDSLNGVDPM----ILNALAKYMGDEANEKSGKKIDANSWDM 433

Query: 159 ---VDSPQQTNGYDCGVYVI 175
               D PQQ NGYDCG++++
Sbjct: 434 EFVEDLPQQKNGYDCGMFML 453

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
147777994	294	hypothetical protein VITISV_012458 [Viti	0.969	0.751	0.696	8e-87
297746197	222	unnamed protein product [Vitis vinifera]	0.969	0.995	0.691	1e-86
357472439	236	Sentrin-specific protease [Medicago trun	0.995	0.961	0.671	3e-84
255582971	228	sentrin/sumo-specific protease, senp8, p	1.0	1.0	0.662	1e-83
449463679	236	PREDICTED: NEDD8-specific protease 1-lik	1.0	0.966	0.637	1e-82
358248786	228	uncharacterized protein LOC100800268 [Gl	0.995	0.995	0.656	6e-81
388519455	192	unknown [Medicago truncatula]	0.842	1.0	0.687	2e-72
297793575	226	Ulp1 protease family protein [Arabidopsi	0.973	0.982	0.563	5e-69
15238636	226	NEDD8-specific protease 1 [Arabidopsis t	0.973	0.982	0.559	1e-68
297788229	226	Ulp1 protease family protein [Arabidopsi	0.973	0.982	0.555	2e-67

>gi|147777994|emb|CAN67573.1| hypothetical protein VITISV_012458 [Vitis vinifera]

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 156/224 (69%), Positives = 182/224 (81%), Gaps = 3/224 (1%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MGKS ADD ILSYNDVVLRRSDLDILSGP FLNDR+IEFYFSYL+SC  S DI LVPPSI
Sbjct: 73  MGKSWADDMILSYNDVVLRRSDLDILSGPRFLNDRLIEFYFSYLTSCYPSPDISLVPPSI 132

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI+NCPD   L++FIEPLKL EKKLVIFP+N+NDD+  AEGG+HWSL+ +E N NVFV
Sbjct: 133 AFWIMNCPDTGSLRDFIEPLKLSEKKLVIFPINNNDDVEQAEGGTHWSLLAFEENANVFV 192

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   +N+  ARKL+ AVVGFMG+S S S  +YL+C DSPQQ N YDCG+YV A A+A
Sbjct: 193 HHDSCGGLNEAHARKLYKAVVGFMGNSNS-SRAQYLECKDSPQQANCYDCGLYVAATAKA 251

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGL 224
           ICCWY S +    EG+WFS VKEQVTS+VV+ +R E+L LI+ L
Sbjct: 252 ICCWYGSGQ--PGEGLWFSVVKEQVTSSVVADLRSEMLGLIRNL 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746197|emb|CBI16253.3| unnamed protein product [Vitis vinifera]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/224 (69%), Positives = 183/224 (81%), Gaps = 3/224 (1%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MGKS ADD ILSYNDVVLRRSDLDILSGP+FLNDR+IEFYFSYL+SC  S DI LVPPSI
Sbjct: 1   MGKSWADDMILSYNDVVLRRSDLDILSGPHFLNDRLIEFYFSYLTSCYPSPDISLVPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI+NCPD   L++FIEPLKL EKKLVIFP+N+NDD+  AEGG+HWSL+ +E N NVFV
Sbjct: 61  AFWIMNCPDTGSLRDFIEPLKLSEKKLVIFPINNNDDVEQAEGGTHWSLLAFEENANVFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   +N+  ARKL+ AVVGFMG+S S S  +YL+C DSPQQ N YDCG+YV A A+A
Sbjct: 121 HHDSCGGLNEAHARKLYKAVVGFMGNSNS-SRAQYLECKDSPQQANCYDCGLYVAATAKA 179

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGL 224
           ICCWY S +    EG+WFS VKEQ+TS+VV+ +R E+L LI+ L
Sbjct: 180 ICCWYGSGQ--PGEGLWFSVVKEQLTSSVVADLRSEMLGLIRNL 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472439|ref|XP_003606504.1| Sentrin-specific protease [Medicago truncatula] gi|355507559|gb|AES88701.1| Sentrin-specific protease [Medicago truncatula]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 153/228 (67%), Positives = 179/228 (78%), Gaps = 1/228 (0%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MGKS ADDKILSYNDVVLRRSDL ILSGPYFLNDRIIEF+ SYLSS   SQDILLVPPSI
Sbjct: 1   MGKSEADDKILSYNDVVLRRSDLGILSGPYFLNDRIIEFHLSYLSSSHPSQDILLVPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI+ CP    LK+F++PL L +KKLV+FP+N+NDD++++EGGSHWSL+ Y RN NVFV
Sbjct: 61  AFWIIQCPVVEALKDFLDPLHLSDKKLVLFPINNNDDVNISEGGSHWSLLAYYRNANVFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   MN   A+KL+ AVVG+MG S S S   YL+  DSP+Q NGYDCG+YV AIAR 
Sbjct: 121 HHDSCRSMNATPAKKLYKAVVGYMGLSESGSKAGYLEWTDSPRQANGYDCGLYVTAIARV 180

Query: 181 ICCWY-ESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           IC WY  SS+  DA  +WFS VKEQVT + V+ MR EIL LI+ LM +
Sbjct: 181 ICEWYVNSSKKTDANDLWFSVVKEQVTPSAVACMRSEILALIRDLMAR 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582971|ref|XP_002532255.1| sentrin/sumo-specific protease, senp8, putative [Ricinus communis] gi|223528043|gb|EEF30121.1| sentrin/sumo-specific protease, senp8, putative [Ricinus communis]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/228 (66%), Positives = 182/228 (79%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MGKS AD+KILSYNDVVLRRSDLDIL+GPYFLNDRIIEFYFSYLSS   S+DI+L+ PS+
Sbjct: 1   MGKSGADEKILSYNDVVLRRSDLDILNGPYFLNDRIIEFYFSYLSSSHPSEDIILLSPSV 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI NC D   LK+F+EPLKLP+KKLV+FPVN+N+D++LAEGGSHWSL+VYER+ NVFV
Sbjct: 61  AFWISNCLDTESLKDFLEPLKLPDKKLVMFPVNNNEDVNLAEGGSHWSLLVYERSCNVFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS    NK  A +L+ AV  ++G S + ++ KY+D  DSPQQ NGYDCG+YV AIA A
Sbjct: 121 HHDSYSGTNKRHALQLYKAVARYIGTSDATAHAKYMDLNDSPQQVNGYDCGLYVTAIAGA 180

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEKK 228
           IC W ES + K+ + +WFS VKEQVT   V+ MR EIL LI+ LM  K
Sbjct: 181 ICYWNESCDRKERDCLWFSVVKEQVTPAAVAAMRTEILSLIRSLMVSK 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463679|ref|XP_004149559.1| PREDICTED: NEDD8-specific protease 1-like [Cucumis sativus] gi|449533234|ref|XP_004173581.1| PREDICTED: NEDD8-specific protease 1-like [Cucumis sativus]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/229 (63%), Positives = 177/229 (77%), Gaps = 1/229 (0%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MGKS  D+KILSYNDVVLR+SDL+ILSGPYFLNDRIIEFYFSYLS+   S  ILL PPSI
Sbjct: 1   MGKSEGDEKILSYNDVVLRKSDLEILSGPYFLNDRIIEFYFSYLSTTHPSNGILLSPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFW++NCPD   L  F+EPL LP KKLVIFPVNDN D+S  EGG+HWSL+ + R  N+FV
Sbjct: 61  AFWMMNCPDVESLNSFLEPLNLPHKKLVIFPVNDNIDVSKPEGGNHWSLLAFYREANIFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGD-STSASNGKYLDCVDSPQQTNGYDCGVYVIAIAR 179
           HHDSN  MNK  A++L++AV  FM D S S  N  Y++CV+SPQQ NGYDCGVYV AIAR
Sbjct: 121 HHDSNKGMNKYAAKRLYNAVARFMNDGSISTLNPSYVECVESPQQVNGYDCGVYVTAIAR 180

Query: 180 AICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEKK 228
           +IC WYE     + +G+WFS V E+++ ++V+ MR+EIL LI+ LM  K
Sbjct: 181 SICKWYEERREVEKDGLWFSAVVEEISPSLVANMRREILGLIRSLMAVK 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248786|ref|NP_001239684.1| uncharacterized protein LOC100800268 [Glycine max] gi|255647402|gb|ACU24166.1| unknown [Glycine max]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 149/227 (65%), Positives = 175/227 (77%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           M KS AD+KILSYNDVVLRRSDL ILSGPYFLNDRIIEFYFSYLSSC  SQDILLVPPSI
Sbjct: 1   MRKSKADEKILSYNDVVLRRSDLHILSGPYFLNDRIIEFYFSYLSSCHPSQDILLVPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI+ CP A  L +FIEPL LP+K LVIFPVNDNDD+  AEGGSHWSL+ Y RN N+FV
Sbjct: 61  AFWIIQCPVAEALGDFIEPLHLPDKTLVIFPVNDNDDVDRAEGGSHWSLLAYYRNANLFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   MN   A++L+  + G+MG S SAS   +L+C +SP Q NGYDCG+Y  AIAR 
Sbjct: 121 HHDSCRSMNAAPAKQLYKGIAGYMGSSGSASEASFLECTNSPMQDNGYDCGLYATAIARV 180

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           IC W+ + ++ D   +WFS VKEQV+ + V+ MR EIL LI+ LM +
Sbjct: 181 ICNWHVNHKNADTNDLWFSAVKEQVSPSAVASMRGEILALIRDLMAR 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519455|gb|AFK47789.1| unknown [Medicago truncatula]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 154/192 (80%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MGKS ADDKILSYNDVVLRRSDL ILSGPYFLNDRIIEF+ SYLSS   SQDILLVPPSI
Sbjct: 1   MGKSEADDKILSYNDVVLRRSDLGILSGPYFLNDRIIEFHLSYLSSSHPSQDILLVPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI+ CP    LK+F++PL L +KKLV+FP+N+NDD++++EGGSHWSL+ Y RN NVFV
Sbjct: 61  AFWIIQCPVVEALKDFLDPLHLSDKKLVLFPINNNDDVNISEGGSHWSLLAYYRNANVFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   MN   A+KL+ AVVG+MG S S S   YL+  DSP+Q NGYDCG+YV AIAR 
Sbjct: 121 HHDSCRSMNATPAKKLYKAVVGYMGLSESGSKAGYLEWTDSPRQANGYDCGLYVTAIARV 180

Query: 181 ICCWYESSEHKD 192
           IC WY +S  K+
Sbjct: 181 ICEWYVNSSKKN 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793575|ref|XP_002864672.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297310507|gb|EFH40931.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 166/227 (73%), Gaps = 5/227 (2%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MG ++ DDKILSY DVVLRRSDLDIL+GP FLNDR+IEFY S+LS+   S  I L+PPSI
Sbjct: 1   MGNTSGDDKILSYEDVVLRRSDLDILNGPNFLNDRVIEFYLSFLSTVHSSPTISLIPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI NCPD  YLK+F++PL L +K L+IFPVNDN ++ +AEGG HWSL+VY +  N FV
Sbjct: 61  AFWISNCPDTEYLKDFVKPLNLRDKDLLIFPVNDNTNVEVAEGGLHWSLLVYYKEANTFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   +NK  A+ LF AV  F+    S  +  Y +C D+PQQ NGYDCGV+++AIAR 
Sbjct: 121 HHDSFMGVNKWSAKDLFKAVSPFV----SNGDASYKECTDTPQQKNGYDCGVFLLAIARV 176

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           IC W+ +   K+ + +WF+ VKE +   +V+ +R+EIL LIK LM +
Sbjct: 177 ICEWFSAGGMKNRDELWFTNVKETLPD-LVNHLREEILGLIKRLMSE 222

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238636|ref|NP_200827.1| NEDD8-specific protease 1 [Arabidopsis thaliana] gi|75180397|sp|Q9LSS7.1|RUBP1_ARATH RecName: Full=NEDD8-specific protease 1; AltName: Full=Deneddylase-1 gi|8885570|dbj|BAA97500.1| unnamed protein product [Arabidopsis thaliana] gi|45752770|gb|AAS76283.1| At5g60190 [Arabidopsis thaliana] gi|62320278|dbj|BAD94571.1| hypothetical protein [Arabidopsis thaliana] gi|332009908|gb|AED97291.1| NEDD8-specific protease 1 [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 165/227 (72%), Gaps = 5/227 (2%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MG ++ DDKILSY DVVLRRSDLDIL+GP FLNDR+IEFY S+LS+   S  I L+PPSI
Sbjct: 1   MGNTSDDDKILSYEDVVLRRSDLDILNGPIFLNDRVIEFYLSFLSTVHSSTTISLIPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI NCPD  YLK+F++PL L +K L+I PVNDN ++ +AEGG HWSL+VY +  N FV
Sbjct: 61  AFWISNCPDTEYLKDFMKPLNLRDKDLLILPVNDNSNVEVAEGGLHWSLLVYYKEANTFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   +N+  A++LF AV  F+    S  +  Y +C D+PQQ NGYDCGV+++A AR 
Sbjct: 121 HHDSYMGVNRWSAKQLFKAVSPFV----SNGDASYKECTDTPQQKNGYDCGVFLLATARV 176

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           IC W+ S   K+ + +WF+ VKE V   +V+ +R+EIL LIK LM +
Sbjct: 177 ICEWFSSGGMKNRDELWFANVKETVPD-LVNHLREEILALIKKLMSE 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297788229|ref|XP_002862257.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297307574|gb|EFH38515.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/227 (55%), Positives = 165/227 (72%), Gaps = 5/227 (2%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           MG ++ D KILSY DVVLRRSDLDIL+GP FLNDR+IEFY S+LS+   S  I L+PPSI
Sbjct: 1   MGNTSGDVKILSYEDVVLRRSDLDILNGPNFLNDRVIEFYLSFLSTVHSSPTISLIPPSI 60

Query: 61  AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
           AFWI NCPD  +LK+F++PL L +K L+IFPVNDN ++ +AEGG HWSL+VY +  N FV
Sbjct: 61  AFWISNCPDTEHLKDFVKPLNLRDKDLLIFPVNDNTNVEVAEGGLHWSLLVYYKEANTFV 120

Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
           HHDS   +NK  A+ L+ AV  F+    S  +  Y +C D+PQQ NGYDCGV+++AIAR 
Sbjct: 121 HHDSFMGVNKWSAKDLYKAVSPFV----SNGDASYKECTDTPQQKNGYDCGVFLLAIARV 176

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           IC W+ +   K+ + +WF+ VKE V   +V+ +R+EIL LIK LM +
Sbjct: 177 ICEWFSAGGMKNRDELWFTNVKETVPD-LVNHLREEILGLIKRLMSE 222

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2144020	226	AT5G60190 [Arabidopsis thalian	0.973	0.982	0.559	3.2e-65
ZFIN|ZDB-GENE-060929-1186	212	zgc:153043 "zgc:153043" [Danio	0.912	0.981	0.352	1e-29
MGI|MGI:1918849	221	Senp8 "SUMO/sentrin specific p	0.903	0.932	0.349	2.4e-28
RGD|1309955	217	Senp8 "SUMO/sentrin specific p	0.741	0.778	0.386	2.4e-28
UNIPROTKB|I3L5H4	227	SENP8 "Uncharacterized protein	0.912	0.916	0.342	3.9e-28
UNIPROTKB|E2RNH6	212	SENP8 "Uncharacterized protein	0.741	0.797	0.375	6.4e-28
UNIPROTKB|Q96LD8	212	SENP8 "Sentrin-specific protea	0.741	0.797	0.370	1.7e-27
UNIPROTKB|E1BKK7	220	LOC782385 "Uncharacterized pro	0.763	0.790	0.344	1.1e-25
UNIPROTKB|E1BLI3	228	LOC782385 "Uncharacterized pro	0.763	0.763	0.338	2.9e-25
DICTYBASE|DDB_G0278795	243	senp8 "sentrin-specific protea	0.925	0.868	0.306	1.1e-23

TAIR|locus:2144020 AT5G60190 [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 127/227 (55%), Positives = 165/227 (72%)

Query:     1 MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
             MG ++ DDKILSY DVVLRRSDLDIL+GP FLNDR+IEFY S+LS+   S  I L+PPSI
Sbjct:     1 MGNTSDDDKILSYEDVVLRRSDLDILNGPIFLNDRVIEFYLSFLSTVHSSTTISLIPPSI 60

Query:    61 AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
             AFWI NCPD  YLK+F++PL L +K L+I PVNDN ++ +AEGG HWSL+VY +  N FV
Sbjct:    61 AFWISNCPDTEYLKDFMKPLNLRDKDLLILPVNDNSNVEVAEGGLHWSLLVYYKEANTFV 120

Query:   121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
             HHDS   +N+  A++LF AV  F+    S  +  Y +C D+PQQ NGYDCGV+++A AR 
Sbjct:   121 HHDSYMGVNRWSAKQLFKAVSPFV----SNGDASYKECTDTPQQKNGYDCGVFLLATARV 176

Query:   181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
             IC W+ S   K+ + +WF+ VKE V   +V+ +R+EIL LIK LM +
Sbjct:   177 ICEWFSSGGMKNRDELWFANVKETVPD-LVNHLREEILALIKKLMSE 222

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0019784 "NEDD8-specific protease activity" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

ZFIN|ZDB-GENE-060929-1186 zgc:153043 "zgc:153043" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 79/224 (35%), Positives = 126/224 (56%)

Query:     7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSS-CL--VSQDILLVPPSIAFW 63
             D  +LSY D +LRRSD+ +L+GP++LND++I F F Y ++ C   +S  I  + P +A +
Sbjct:     2 DPVVLSYQDSLLRRSDVALLNGPHWLNDQVIGFAFEYFTTECFKSLSDKICFISPEVAQF 61

Query:    64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
             I        L  F+EPL L  ++ V   VNDN + +   GGSHWSL++Y R+ + F H+D
Sbjct:    62 IKYASCHEELAIFLEPLSLASRRWVFLAVNDNSNQTA--GGSHWSLLLYRRDTSQFAHYD 119

Query:   124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICC 183
             S    N + AR++ + +  F+G   + +   +++    P Q N YDCG+YVI  A A+C 
Sbjct:   120 SQSGSNSLHARRIAAKLEAFLG---AGAKVPFVE-EQCPSQQNSYDCGMYVICNAEALC- 174

Query:   184 WYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
               ES +    EG + S     +T T ++  R +   LI+ L ++
Sbjct:   175 --ESIK---TEG-FPSLPTPIITPTYITHKRTDWYSLIQRLAKE 212

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1918849 Senp8 "SUMO/sentrin specific peptidase 8" [Mus musculus (taxid:10090)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 79/226 (34%), Positives = 120/226 (53%)

Query:     7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
             D  +LSY D +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +
Sbjct:     2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVCFISPEVTQF 61

Query:    64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
             I        +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+D
Sbjct:    62 IKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119

Query:   124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
             S+ R N I A+++   +  F+G     S G  L  V+  +P Q N YDCG+YVI    A+
Sbjct:   120 SHSRSNSIHAKQVAEKLKAFLG-----SKGDKLVFVEEKAPAQENSYDCGMYVICNTEAL 174

Query:   182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
             C   +S   +  E        + +T T +++ R E   LI  L +K
Sbjct:   175 C---QSLFRRQPESPL-----QLLTPTYITKKRGEWKDLIARLAKK 212

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019784 "NEDD8-specific protease activity" evidence=ISO

RGD|1309955 Senp8 "SUMO/sentrin specific peptidase family member 8" [Rattus norvegicus (taxid:10116)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 70/181 (38%), Positives = 102/181 (56%)

Query:     7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
             D  +LSY D +LR+SD+ +L  P +LND II F F Y +S      S  +  + P +  +
Sbjct:     2 DPVVLSYMDSLLRQSDVSLLDPPNWLNDHIIGFAFEYFASSQFHDCSDHVCFISPEVTQF 61

Query:    64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
             I        +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+D
Sbjct:    62 IKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119

Query:   124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
             S+ R N I A+++   +  F+G     S G  L  V+  +P Q N YDCG+YVI    A+
Sbjct:   120 SHSRSNSIHAKQVAEKLKAFLG-----SKGDKLVFVEEKAPAQQNSYDCGMYVICNTEAL 174

Query:   182 C 182
             C
Sbjct:   175 C 175

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|I3L5H4 SENP8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 78/228 (34%), Positives = 121/228 (53%)

Query:     2 GKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPP 58
             G+   D  +LSY D +LR+SD+ +L  P +LND II F F Y ++      S  I  + P
Sbjct:     5 GQYKMDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHICFISP 64

Query:    59 SIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
              +  +I    +   +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N 
Sbjct:    65 EVTQFIKCTGNPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNS 122

Query:   119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIA 176
             F H+DS+ R N + A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI 
Sbjct:   123 FFHYDSHSRSNSVHAKQVAEKLEDFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVIC 177

Query:   177 IARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGL 224
                A+C   +S   +  E +      + +T T +++ R E   LI  L
Sbjct:   178 NTEALC---QSLFRQQPESLL-----QLLTPTYITKKRSEWKDLIARL 217

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E2RNH6 SENP8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 68/181 (37%), Positives = 103/181 (56%)

Query:     7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
             D  +LSY D +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +
Sbjct:     2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVCFISPEVTQF 61

Query:    64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
             I    + T +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+D
Sbjct:    62 IKCTSNQTEIAMFLEPLDLPNKRVVFLAINDNSNE--AAGGTHWSLLVYIQDKNSFFHYD 119

Query:   124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
             S+ R N + A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI    A+
Sbjct:   120 SHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEAL 174

Query:   182 C 182
             C
Sbjct:   175 C 175

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q96LD8 SENP8 "Sentrin-specific protease 8" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 67/181 (37%), Positives = 102/181 (56%)

Query:     7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
             D  +LSY D +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +
Sbjct:     2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQF 61

Query:    64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
             I    +   +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+D
Sbjct:    62 IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119

Query:   124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
             S+ R N + A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI    A+
Sbjct:   120 SHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEAL 174

Query:   182 C 182
             C
Sbjct:   175 C 175

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|E1BKK7 LOC782385 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 64/186 (34%), Positives = 101/186 (54%)

Query:     2 GKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPP 58
             G+   D  +LSY D +LR+SD+ +L  P +LND +I F F Y ++      S  +  + P
Sbjct:     5 GQYKMDPVVLSYMDSLLRQSDVSLLDPPSWLNDHVIGFAFEYFANSQFHDCSDHVCFISP 64

Query:    59 SIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
              +  +I    +   +  F+EPL LP K+++   +NDN + +   GG+HWSL+VY ++ N 
Sbjct:    65 EVTQFIKCTGNPAEIAMFLEPLDLPNKRVIFLAINDNSNHTA--GGTHWSLLVYLQDKNG 122

Query:   119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIA 176
             F H+DS    N   A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI 
Sbjct:   123 FFHYDSYGSSNSFHAKQVAEKLEAFLG-----RKGNKLAFVEEKAPAQQNSYDCGMYVIC 177

Query:   177 IARAIC 182
                A+C
Sbjct:   178 NTEALC 183

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E1BLI3 LOC782385 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 63/186 (33%), Positives = 101/186 (54%)

Query:     2 GKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPP 58
             G+   D  +LSY D +L++SD+ +L  P +LND +I F F Y ++      S  +  + P
Sbjct:     5 GQYKMDPVVLSYMDSLLQQSDVSLLDPPSWLNDHVIGFAFEYFANSQFHDCSDHVCFISP 64

Query:    59 SIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
              +  +I    +   +  F+EPL LP K+++   +NDN + +   GG+HWSL+VY ++ N 
Sbjct:    65 EVTQFIKCTGNPAEIAMFLEPLDLPNKRVIFLAINDNSNHTA--GGTHWSLLVYLQDKNG 122

Query:   119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIA 176
             F H+DS    N   A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI 
Sbjct:   123 FFHYDSYGSSNSFHAKQVAEKLEAFLG-----RKGNKLAFVEEKAPAQQNSYDCGMYVIC 177

Query:   177 IARAIC 182
                A+C
Sbjct:   178 NTEALC 183

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

DICTYBASE|DDB_G0278795 senp8 "sentrin-specific protease 8" [Dictyostelium discoideum (taxid:44689)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 68/222 (30%), Positives = 119/222 (53%)

Query:     6 ADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYL------SSCLVSQDILLVPPS 59
             +D  I+SYND  + +SD++IL    +LND II FY  +L      +   +   +LL+ PS
Sbjct:     2 SDPLIVSYNDSAIYQSDINILKSNQWLNDSIISFYLEWLKDGGEDNKNKIPNQVLLLSPS 61

Query:    60 IAFWILNCPDATYLK-EFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
             + F          ++  F +PL L  K+++ FP+ +N D ++  GG+HWSL+++ ++ N 
Sbjct:    62 VVFCCSFVESEQEIQLMFEQPLSLKTKEVIFFPLTNNRDPNVIGGGTHWSLLIFIKSLNK 121

Query:   119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGK-YLDCVDSPQQTNGYDCGVYVIAI 177
             F+++DS +  N   A  + S     +      +N K +L    +PQQ NGYDCG+YV++I
Sbjct:   122 FIYYDSINSFNSSDAIFIISKFKFLLSSPPPKTNLKEFLINQKTPQQQNGYDCGLYVLSI 181

Query:   178 ARAIC-CWYESSEHKDAEGMWFSFVKEQVTSTVVSQMR-KEI 217
                +     + +E+   E    S+ K+ + S   +++  KEI
Sbjct:   182 IEELLKLIIKENENNKGEENKISY-KDLLLSEFTNELLFKEI 222

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5FVJ8	SENP8_RAT	3, ., 4, ., 2, 2, ., 6, 8	0.3495	0.9035	0.9493	yes	no
Q9LSS7	RUBP1_ARATH	3, ., 4, ., 2, 2, ., 6, 8	0.5594	0.9736	0.9823	yes	no
Q96LD8	SENP8_HUMAN	3, ., 4, ., 2, 2, ., 6, 8	0.3318	0.9035	0.9716	yes	no
Q9D2Z4	SENP8_MOUSE	3, ., 4, ., 2, 2, ., 6, 8	0.3495	0.9035	0.9321	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.691
3rd Layer	3.4.22.68	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	3e-10
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	2e-06
PLN03189	490	PLN03189, PLN03189, Protease specific for SMALL UB	5e-04

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 26/168 (15%)

Query: 22  DLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF--WILNCPDATY---LKEF 76
           D   L    +LND II+FY   LS   +S++         F  +            ++ +
Sbjct: 387 DFKRLRNGDWLNDTIIDFYMKLLSK--ISKNTSKREQVHLFNTFFYTKLSRRGYSGVRRW 444

Query: 77  IEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKL 136
            +   +  KK +  P+N +          HW L + +      ++ DS    +      +
Sbjct: 445 TKKTDIFSKKYIFIPINIS---------YHWFLAIIDNPKKNILYFDSLANTH----DPV 491

Query: 137 FSAVVGFMGDSTSASNGK-----YLDCVDSPQQTNGYDCGVYVIAIAR 179
              +  ++ D     + K        C   PQQ NG DCGV+V    R
Sbjct: 492 LEFLRSYLLDEYKIQHDKDPQIKMKHC-KVPQQRNGSDCGVFVCMFIR 538

Length = 578

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 19/109 (17%)

Query: 82  LPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVV 141
           L +  ++  P+N          G HW L++           DS   ++    +K    + 
Sbjct: 80  LFDVDIIYIPIN--------WDGKHWVLLIINLPKKTITILDSLISLHTEAVKKRIRPID 131

Query: 142 GFM-----------GDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIAR 179
             +            D    +  +       PQQ N  DCG YV+    
Sbjct: 132 NMLPYLMSEALKKEQDDPDLTPFEIKRLTKVPQQPNSGDCGPYVLKFIE 180

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 16/80 (20%)

Query: 106 HWSLIVYERNGNVFVHHDSNHRMNKIKAR--KLFSAVVGFMGDSTSASNGKYLDCV---- 159
           HW+L V  +    F + DS      +K R  K+  A+  +  D     + K +D      
Sbjct: 381 HWTLAVINKKDQKFQYLDS------LKGRDPKILDALAKYYVDEVKDKSEKDIDVSSWEQ 434

Query: 160 ----DSPQQTNGYDCGVYVI 175
               D P+Q NGYDCG+++I
Sbjct: 435 EFVEDLPEQKNGYDCGMFMI 454

Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	100.0
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	100.0
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	100.0
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	100.0
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.97
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	99.28
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	97.87
PRK11836	403	deubiquitinase; Provisional	97.87
PRK14848	317	deubiquitinase SseL; Provisional	97.83
PF00770	183	Peptidase_C5: Adenovirus endoprotease; InterPro: I	97.01
PF03421	177	YopJ: YopJ Serine/Threonine acetyltransferase; Int	94.78
PRK15371	287	effector protein YopJ; Provisional	92.45
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	85.88

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=100.00  E-value=9.3e-48  Score=303.72  Aligned_cols=210  Identities=34%  Similarity=0.615  Sum_probs=185.5

Q ss_pred             CCCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhh-hccC-CCeeeeChhhhHHHhcCCChHHHHHhhccCC
Q 027072            4 SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSS-CLVS-QDILLVPPSIAFWILNCPDATYLKEFIEPLK   81 (228)
Q Consensus         4 ~~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~-~~~~-~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~   81 (228)
                      |..++.+++|.|++|+.+|+++|+++.|+||.+|+||.+||.+ .+++ .+.+|+.|+.+|++++++++++++.++.+.+
T Consensus         5 s~~~pv~Lsy~dv~Lr~sDVdlL~~p~wlnD~~I~F~~e~l~~~~~~s~~~~~ll~P~~t~~l~~~~~~~e~~~~~~pl~   84 (223)
T KOG3246|consen    5 SLSDPVVLSYFDVSLRQSDVDLLQPPEWLNDRLIDFYYEYLEHRRSRSEPDLHLLRPSLTFFLRHAPNPEEIAMVLDPLD   84 (223)
T ss_pred             ccCCceEEEeeehhhhhhhhhhcCCCchhhhhHHHHHHHHHHHhhcccCcchhccCHHHHHHHHhCCCcHHHHHhcChhh
Confidence            4455679999999999999999999999999999999999997 4442 3468999999999999999999999999999


Q ss_pred             CCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCC
Q 027072           82 LPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDS  161 (228)
Q Consensus        82 ~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~  161 (228)
                      +.++++||+|||+|++.++++||+||+|+|++.++++++||||+.+.|...++++++.++.+++..    ...+. ...|
T Consensus        85 l~~k~~iflpiNDn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n~nt~~a~~l~~kl~~ll~~~----~~~~~-~~~~  159 (223)
T KOG3246|consen   85 LNDKDFIFLPINDNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSNGNTKDAKSLMKKLRALLKKK----FAKRV-ECKC  159 (223)
T ss_pred             cCCCceEEEEecCCCcccccCCCcceEEEEEEeeCCcEEEeecccCCCcHHHHHHHHHHHHHHhhh----hhhcc-cccC
Confidence            999999999999999999999999999999999999999999999999999999999999999732    22222 4789


Q ss_pred             CCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhhh
Q 027072          162 PQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLME  226 (228)
Q Consensus       162 pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~~  226 (228)
                      |||.||+|||+|||++++.+++++..+..+..        .....++.|+++|++|.++|..|..
T Consensus       160 ~qQqNgyDCG~hV~~~t~~l~~~~~~~~~~~~--------~~~~~~~~i~~lr~~l~~LI~slg~  216 (223)
T KOG3246|consen  160 LQQQNGYDCGLHVCCNTRVLAERLLRCPYATS--------SQLLVVDLIKALREELLDLIQSLGS  216 (223)
T ss_pred             hhhhcCCchhHHHHHHHHHHHHHHhccccccc--------cchhhHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999988654331        1345688999999999999999984

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-39  Score=286.05  Aligned_cols=194  Identities=21%  Similarity=0.260  Sum_probs=161.7

Q ss_pred             CCCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhccCC----CeeeeChhhhHHHhcCC--ChHHHHHhh
Q 027072            4 SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQ----DILLVPPSIAFWILNCP--DATYLKEFI   77 (228)
Q Consensus         4 ~~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~~~----~i~~~~p~~~~~~~~~~--~~~~~~~~~   77 (228)
                      ....+.++..+++.||.+|+.+|.+++||||+||+|||++|.+..+..    .++++   ++||+.++.  +++.|++|+
T Consensus       306 ~~~~~~~~~~~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~yp~~h~F---nTFFy~kL~~~gy~~VkRWT  382 (511)
T KOG0778|consen  306 RNSTEILVTHFNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSKYPKVHAF---NTFFYTKLVGRGYAGVKRWT  382 (511)
T ss_pred             CCcccceehhccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCCCceEEEE---echhhhhhhhcchHHHHhHh
Confidence            455677788888999999999999999999999999999999987643    25554   567887764  478999999


Q ss_pred             ccCCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCc----CCCCCC
Q 027072           78 EPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDS----TSASNG  153 (228)
Q Consensus        78 ~~~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~----~~~~~~  153 (228)
                      ++++++++++||+|||.         +.||+|+|||.++++|.|||||++.....+..|+++|.......    .+-.+|
T Consensus       383 k~v~if~~d~i~vPIH~---------~vHW~l~vid~r~k~i~y~DS~~~~~nr~~~aL~~Yl~~E~~~k~~~~~d~s~w  453 (511)
T KOG0778|consen  383 KKVDIFDKDIIFVPIHL---------GVHWCLAVIDLREKTIEYYDSLGGGPNRICDALAKYLQDESRDKSKKDFDVSGW  453 (511)
T ss_pred             hccCccccceeEeeeec---------CceEEEEEEEcccceEEEeeccCCCCcchHHHHHHHHHHHHhhhhcCCCCccch
Confidence            99999999999999998         89999999999999999999999764455688888887765221    123567


Q ss_pred             eeecCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhh
Q 027072          154 KYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLM  225 (228)
Q Consensus       154 ~~v~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~  225 (228)
                      ......++|||.||+|||+|+|+|++++.+..+                -.+|++++-.||+.|...|...+
T Consensus       454 ~~~~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~~p----------------~~ftq~dmp~fR~~m~~eI~~~~  509 (511)
T KOG0778|consen  454 TIEFVQNIPQQRNGSDCGMFVCKYADYISRDVP----------------LTFTQQDMPYFRKKMAKEILHLK  509 (511)
T ss_pred             hhhhhhccccccCCCccceEEeeechhhccCCC----------------cccChhhhHHHHHHHHHHHHhhh
Confidence            765567899999999999999999999998432                36678999999999999998754

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=100.00  E-value=4.5e-37  Score=270.41  Aligned_cols=191  Identities=19%  Similarity=0.250  Sum_probs=149.1

Q ss_pred             CCceEEEC--CeEEehhhhhccCCCCccChHHHHHHHHHHhhhcc---C--CCeeeeChhhhHHHhcCC------ChHHH
Q 027072            7 DDKILSYN--DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---S--QDILLVPPSIAFWILNCP------DATYL   73 (228)
Q Consensus         7 ~~~v~~~~--~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~---~--~~i~~~~p~~~~~~~~~~------~~~~~   73 (228)
                      .+.+++..  ++.||.+|+.+|.+++||||.|||||+.+|.+...   .  ..+++++   +||+.++.      +++.+
T Consensus       277 ~~vlvs~~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~h~FN---TFFytkL~~~~~~ygY~~V  353 (490)
T PLN03189        277 RKVLVTHENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKCHFFN---TFFYKKLVSGKSGYDYKAV  353 (490)
T ss_pred             cceeeecCCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccceEEEe---hHHHHHHhhcCCcCChHHH
Confidence            34555443  78999999999999999999999999999986432   1  3566664   45655442      36789


Q ss_pred             HHhhcc----CCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCc--
Q 027072           74 KEFIEP----LKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDS--  147 (228)
Q Consensus        74 ~~~~~~----~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~--  147 (228)
                      ++|+++    +.++++++||||||.         +.||+|+||+.+.++|.|||||++.+...++.+..++.......  
T Consensus       354 rRWTk~kKigv~Lfs~D~IFIPIh~---------n~HWsLaVId~k~k~I~yyDSLgg~~~~vL~~L~rYL~~E~kdK~g  424 (490)
T PLN03189        354 RRWTTQKKLGYHLIDCDKIFVPIHQ---------EIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSE  424 (490)
T ss_pred             HHHhhhcccccccccCceEEeeeec---------CCeeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcC
Confidence            999864    358899999999997         69999999999999999999999988776666666665443221  


Q ss_pred             --CCCCCCeeecCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhh
Q 027072          148 --TSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLM  225 (228)
Q Consensus       148 --~~~~~~~~v~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~  225 (228)
                        .....|.......+|||.||+|||||||+||+++.++..                -.++++.|..+|++|...|..+.
T Consensus       425 ~d~D~s~W~~~~~~~vPQQ~NG~DCGVFVL~yAE~~SrG~~----------------LtFSQeDMp~fRrRma~EIl~~r  488 (490)
T PLN03189        425 KDIDVSSWEQEFVEDLPEQKNGYDCGMFMIKYIDFYSRGLG----------------LCFGQEHMPYFRLRTAKEILRLK  488 (490)
T ss_pred             CCcchhcceeccCCCCCCCCCCCCHHHHHHHHHHHHcCCCC----------------CCcChhhhHHHHHHHHHHHHHhh
Confidence              112456553346899999999999999999999987432                24789999999999999998763

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.5e-35  Score=255.55  Aligned_cols=183  Identities=23%  Similarity=0.328  Sum_probs=144.3

Q ss_pred             CCeEEehhhhhccCCCCccChHHHHHHHHHHhhhcc----CCCeeeeChhhhHHHhcCC--ChHHHHHhhccCCCCCCcE
Q 027072           14 NDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV----SQDILLVPPSIAFWILNCP--DATYLKEFIEPLKLPEKKL   87 (228)
Q Consensus        14 ~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~----~~~i~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   87 (228)
                      .++.|+.+|+.+|.+++||||.||+|||++|.+..+    .++++++   ++||+..+.  .++.|++|+++++++++++
T Consensus       379 ~~i~IT~~D~~~L~~~~wLNDtIIdFy~k~ls~~sk~~s~~~~vh~F---nTFFYT~LsrrGy~gVrrW~kk~dif~~k~  455 (578)
T COG5160         379 SSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKNTSKREQVHLF---NTFFYTKLSRRGYSGVRRWTKKTDIFSKKY  455 (578)
T ss_pred             CcceeehHhhhhhccccchhhHHHHHHHHHHHHhccCcccccceEEe---ehhhHHHHHHHHhHHHHHHHhccCccccce
Confidence            489999999999999999999999999999976554    3567776   467777664  3678999999999999999


Q ss_pred             EEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhc-CcCCCCCCeeecCCCCCCCCC
Q 027072           88 VIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMG-DSTSASNGKYLDCVDSPQQTN  166 (228)
Q Consensus        88 I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~~v~~~~~pqQ~n  166 (228)
                      ||+|||.         ..||+|+|+|.+.+.|.|||||++.....++.+.+++..... ..+......... -+||||.|
T Consensus       456 I~iPIni---------~~HW~l~II~~~~~~i~~~DSLan~~~~v~~~L~~Y~ldE~k~~~~k~~~~~~~~-~~vPqQ~N  525 (578)
T COG5160         456 IFIPINI---------SYHWFLAIIDNPKKNILYFDSLANTHDPVLEFLRSYLLDEYKIQHDKDPQIKMKH-CKVPQQRN  525 (578)
T ss_pred             EEEEecc---------cceEEEEEeecCcceeEEecccccCcHHHHHHHHHHHHHHHhcccCCchhhhhhc-CCCCCCCC
Confidence            9999998         799999999999999999999998775444444444332211 111112233333 78999999


Q ss_pred             CCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhh
Q 027072          167 GYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLM  225 (228)
Q Consensus       167 ~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~  225 (228)
                      |+|||||||+++++++.+.+                ..++.+++.++|+.|.+.|..++
T Consensus       526 g~DCGV~vc~~~~~~~~~~p----------------~~f~~nd~~r~Rk~m~h~i~~~q  568 (578)
T COG5160         526 GSDCGVFVCMFIRYFLENPP----------------EQFSKNDRPRARKNMAHTIKDLQ  568 (578)
T ss_pred             CCccceEEEEeeeecccCCh----------------hhcCccchHHHHHHHHHHHHHHH
Confidence            99999999999999888432                34557778899999999887654

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.97  E-value=2.5e-29  Score=205.74  Aligned_cols=176  Identities=22%  Similarity=0.290  Sum_probs=119.9

Q ss_pred             CccChHHHHHHHHHHhhh-----ccCCCeeeeChhhhHHHh-cCC------------------ChHHHHHhhccC---CC
Q 027072           30 YFLNDRIIEFYFSYLSSC-----LVSQDILLVPPSIAFWIL-NCP------------------DATYLKEFIEPL---KL   82 (228)
Q Consensus        30 ~wLnD~iI~~~~~~L~~~-----~~~~~i~~~~p~~~~~~~-~~~------------------~~~~~~~~~~~~---~~   82 (228)
                      +||||.|||+|+++|.+.     ...+++.+++|.....+. ...                  ....+.+|.++.   .+
T Consensus         1 ~wLnd~iId~y~~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (216)
T PF02902_consen    1 EWLNDSIIDFYLEYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNL   80 (216)
T ss_dssp             --EEHHHHHHHHHHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTG
T ss_pred             CcCCHHHHHHHHHHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccc
Confidence            699999999999999832     335789999887544443 000                  123345566655   78


Q ss_pred             CCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCH-----HHHHHHHHHHHHhhcC----cCCCCCC
Q 027072           83 PEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNK-----IKARKLFSAVVGFMGD----STSASNG  153 (228)
Q Consensus        83 ~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~-----~~~~~i~~~l~~~l~~----~~~~~~~  153 (228)
                      +++++|++|||.        +++||+|+||+.+.+++++||||++.+.     .....+...+......    .....++
T Consensus        81 ~~~~~i~iPin~--------~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  152 (216)
T PF02902_consen   81 FDKDYIFIPINI--------NNNHWVLLVIDLPKKRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKKKEGRDPDKSPF  152 (216)
T ss_dssp             GGSSEEEEEEEE--------TTTEEEEEEEETTTTEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHHHHSSCT-TTTC
T ss_pred             cccCEEEEEEec--------hhhccceeEEcccccEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccee
Confidence            899999999998        3899999999999999999999998876     2223333333332211    1113466


Q ss_pred             eeecCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhh
Q 027072          154 KYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLM  225 (228)
Q Consensus       154 ~~v~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~  225 (228)
                      ..+.+..+|||+|++|||+|||+||++++.+.....            ...++++.+..+|+++...+.+..
T Consensus       153 ~~~~~~~~pqQ~n~~dCGv~vl~~~~~~~~~~~~~~------------~~~l~~~~i~~~r~~~a~~~~e~~  212 (216)
T PF02902_consen  153 KIVRPPNVPQQPNGYDCGVYVLKFMECLLEGPSFDF------------SQELTEEDIKNFRKKLAVDLYEEL  212 (216)
T ss_dssp             EEEEECTS-SSSSSSCHHHHHHHHHHHHHCTHHSTG------------CCSBTGHHHHHHHHHHHH------
T ss_pred             eecccccccCCCCCCCcHHHHHHHHHHHHhCCCCcc------------cccCCHHHHHHHHHHHHhhccccc
Confidence            666667999999999999999999999999754411            011789999999999998877654

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=4.7e-12  Score=117.58  Aligned_cols=194  Identities=21%  Similarity=0.271  Sum_probs=124.2

Q ss_pred             CeEEehhhhhccCCCCccChHHHHHHHHHHhhhc-c----CCCeeeeChhhhHHHhcCC--------C------hHHHHH
Q 027072           15 DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCL-V----SQDILLVPPSIAFWILNCP--------D------ATYLKE   75 (228)
Q Consensus        15 ~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~-~----~~~i~~~~p~~~~~~~~~~--------~------~~~~~~   75 (228)
                      .+.++.+|+.+|..+..|||.+++||+.++...- +    +++.+++   .++++....        +      ...+++
T Consensus       352 ~~~v~~~Dl~cl~~~e~L~d~i~dfyl~~i~~~~l~~~~~s~~~h~f---~tffyk~l~~~~~~~~~d~~~~~~~~~~~~  428 (595)
T KOG0779|consen  352 SHQVNNNDLVCLEEGEFLNDTIKDFYLEYIRQYLLSQKELSNDRHIF---STFFYKRLCRKLRQKSNDQIQDNRAVRLRT  428 (595)
T ss_pred             ccceeccchhhccccchhhhhhhhhhhHHHHHhhhcccccCcchhhh---hhHHHhhhhhhhhhhhhhhhhccccCceee
Confidence            4478999999999999999999999999998632 2    2444544   345544321        1      124567


Q ss_pred             hhccCCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCC------eEEEEeCCCCCCH-HHHHHHHHHHHHhhcCcC
Q 027072           76 FIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGN------VFVHHDSNHRMNK-IKARKLFSAVVGFMGDST  148 (228)
Q Consensus        76 ~~~~~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~------~i~~~DSl~~~~~-~~~~~i~~~l~~~l~~~~  148 (228)
                      |.+..+++.+++|++|+|.         ..||.+.+++....      ....++++.-... .....+...++.......
T Consensus       429 ~~~~~d~~~k~yi~~P~~E---------~~hw~laiic~p~~e~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (595)
T KOG0779|consen  429 WTRHFDLFNKDYVFVPTHE---------RFHWKLAIICNPDLETETPRPRLELLILKLSADFPIVENILDFMKVASIYNN  499 (595)
T ss_pred             eeeccccccceeEEecCch---------HhhhhccccccCccccCccccchhhhhhccccccchhhhhhhhhhhcccccC
Confidence            8888899999999999998         69999999998642      3344444432211 111222222222111000


Q ss_pred             ------------C-CCCC--eeecCCCCCCCCCCCccHHHHHHHHHHHHHHhhcc----cCcccccchhhhhccccChHH
Q 027072          149 ------------S-ASNG--KYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESS----EHKDAEGMWFSFVKEQVTSTV  209 (228)
Q Consensus       149 ------------~-~~~~--~~v~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  209 (228)
                                  . +.+.  .+.+-...|||.|.+|||+|++.|++.+.......    .....+..|       +.+..
T Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~s~~v~~p~q~n~~dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~~-------~~~~~  572 (595)
T KOG0779|consen  500 ELIVTEDLELEEELPRRLPRGKSETVREPQQNNDVDCGSFVLEFVERFIEDAPERFNIEDEGTINLEW-------FPPKE  572 (595)
T ss_pred             cccccccccccccccccCcccccccccccCccCcccchhhHHHHHHHhhhChhhhccccccccccccc-------CCchH
Confidence                        0 0000  00111123999999999999999999999875441    111111113       45778


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 027072          210 VSQMRKEILQLIKGLMEK  227 (228)
Q Consensus       210 i~~~R~~i~~~i~~l~~~  227 (228)
                      +.++|..+.+++..|.+.
T Consensus       573 ~~~~r~~~r~~~~~l~~~  590 (595)
T KOG0779|consen  573 ILKFRDEIRNLGRKLFTS  590 (595)
T ss_pred             Hhhhhhhhhccccccccc
Confidence            899999999999998765

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.87  E-value=4.6e-05  Score=66.13  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             CCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHH---------------------H------H
Q 027072           81 KLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKI---------------------K------A  133 (228)
Q Consensus        81 ~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~---------------------~------~  133 (228)
                      .-.+++++.+|++-         .+||..+|+|.+++.+.+|||-|.....                     .      .
T Consensus       227 k~~~~RyvmFgfcY---------~~Hwkc~IfDk~~~~v~FydSgG~~P~efhhy~nfyFysfs~gfn~n~~~~s~l~n~  297 (423)
T PF03290_consen  227 KNSKKRYVMFGFCY---------MSHWKCCIFDKEKKIVYFYDSGGNIPEEFHHYKNFYFYSFSDGFNRNNKSTSNLDNE  297 (423)
T ss_pred             hhccccEEEeeeee---------hhcceEEEEeccccEEEEEcCCCCCHHHcCcCCceEEEEccCccccCCCcccccccc
Confidence            34778999999998         6999999999999999999999863110                     0      0


Q ss_pred             HHHHHHHHHhhcCcCCCCCCeeecCCCCCCCCCCCccHHHHHHHHHHHHHHhhc
Q 027072          134 RKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYES  187 (228)
Q Consensus       134 ~~i~~~l~~~l~~~~~~~~~~~v~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~  187 (228)
                      ..=++.|.+++....   +.+.--...--.|-...+||+|++.||.......+.
T Consensus       298 n~dIDVLfrfF~d~f---~~~~gciNvevnQl~eseCGMF~~iFm~~c~~~ppk  348 (423)
T PF03290_consen  298 NCDIDVLFRFFEDSF---GVKYGCINVEVNQLLESECGMFISIFMILCTLTPPK  348 (423)
T ss_pred             cCchHHHHHHHHhhc---ccceeEEEhhhhhhcccccchHHHHHHHHHHccCch
Confidence            011234444444321   112211112367999999999999999887775554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

>PRK11836 deubiquitinase; Provisional

Probab=97.87  E-value=0.00029  Score=59.22  Aligned_cols=143  Identities=20%  Similarity=0.277  Sum_probs=85.5

Q ss_pred             CCCccChHHHHHHHHHHhhhcc----CCCeeeeChhhhHHHhcCCChHHHHHhhccCCCCCCcEEEEeeecCCCcCcCCC
Q 027072           28 GPYFLNDRIIEFYFSYLSSCLV----SQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEG  103 (228)
Q Consensus        28 ~~~wLnD~iI~~~~~~L~~~~~----~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iPin~n~~~~~~~~  103 (228)
                      +.+.|+..=|+.|..-+....+    +.-+.++.|.+.  ..+++  ..+..-++.-+.+-++.-+||||.         
T Consensus       162 ~nRmltsDEia~~~q~~~~~~~n~~VNyPiGLi~P~t~--~~~L~--~~L~E~i~~~~~~~k~~elFpINt---------  228 (403)
T PRK11836        162 KNRQLTTDEIACYLQKIAANAKNTQVNYPTGLYVPYST--RTHLE--DALNENIKSDPSWPKEVQLFPINT---------  228 (403)
T ss_pred             ccccccHHHHHHHhcccccCCccceecCCceeeecCcc--cchhH--HHHHHhhhcCCCCcccceEEEecC---------
Confidence            4566777778887766665443    223445555421  11121  233333444467788899999996         


Q ss_pred             CceeEEEEEEc--------CCCeEEEEeCCCCC--CH-HHHHHHHHHHHH-hhcCcC--------CCCCCeeecCCCCCC
Q 027072          104 GSHWSLIVYER--------NGNVFVHHDSNHRM--NK-IKARKLFSAVVG-FMGDST--------SASNGKYLDCVDSPQ  163 (228)
Q Consensus       104 ~~HW~Llvv~~--------~~~~i~~~DSl~~~--~~-~~~~~i~~~l~~-~l~~~~--------~~~~~~~v~~~~~pq  163 (228)
                      |+||.|+++..        +..+..+|.|+..-  +. ...+.+.+.+.. ++|+-.        ...+..|++ .+ -|
T Consensus       229 g~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~l~~d~~~t~q~ii~a~~~~~~~~~~~~~ik~~~~e~ei~fie-~d-LQ  306 (403)
T PRK11836        229 GGHWILVSLQKIVNEKNNTQQIKCVIFNSLRALGHDKENSLKRVINSFNSELMGEMSNNNIKVHLTEPEIIFLH-AD-LQ  306 (403)
T ss_pred             CCcEEEEEeHHhhhcccccceeEEEEEecHhhhccchhhHHHHHHHhhhhhhhhhcchhhhcccccCCceEEEe-ch-hh
Confidence            89999999864        24578889998753  21 234455554432 333211        123455554 33 45


Q ss_pred             CCCCCccHHHHHHHHHHHHHHh
Q 027072          164 QTNGYDCGVYVIAIARAICCWY  185 (228)
Q Consensus       164 Q~n~~DCGvfvl~~~~~l~~~~  185 (228)
                      |.=...||.|||+.+..++.+.
T Consensus       307 q~vpngCGlFv~~a~Qe~i~q~  328 (403)
T PRK11836        307 QYLSQSCGAFVCMAAQEVIEQR  328 (403)
T ss_pred             hcCCCccceehHHHHHHHHHHh
Confidence            5556789999999999777754

>PRK14848 deubiquitinase SseL; Provisional

Probab=97.83  E-value=0.00021  Score=58.87  Aligned_cols=138  Identities=17%  Similarity=0.212  Sum_probs=79.0

Q ss_pred             CCCccChHHHHHHHHHHhhhcc----CCCeeeeChhhhHHHhcCCChHHHHHhhccCCCCCCcEEEEeeecCCCcCcCCC
Q 027072           28 GPYFLNDRIIEFYFSYLSSCLV----SQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEG  103 (228)
Q Consensus        28 ~~~wLnD~iI~~~~~~L~~~~~----~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iPin~n~~~~~~~~  103 (228)
                      +.+.|+..=|+.+..-+....+    +.-+.++.|.+.  ..+++  ..+..-++.  -+.+..-+||||.         
T Consensus       133 ~~Rmlt~DEi~~~~q~~~~~~~~~~VNyP~GL~~P~s~--~~~L~--~~L~E~i~~--s~~~~nevF~INt---------  197 (317)
T PRK14848        133 GARMLSSDELAAATQGLVQESPLLSVNYPIGLIHPTTK--ENILS--TQLLEKIAQ--SGLSHNEVFLINT---------  197 (317)
T ss_pred             ccccccHHHHHHHhhccccCCccceecCCceeeecCcc--chhHH--HHHHhhhhh--cCCCcceEEEecC---------
Confidence            4577888888888776665443    223445555421  11121  122111221  1233344699996         


Q ss_pred             CceeEEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCCCCCCCCCccHHHHHHHHHHH
Q 027072          104 GSHWSLIVYER--NGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAI  181 (228)
Q Consensus       104 ~~HW~Llvv~~--~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~pqQ~n~~DCGvfvl~~~~~l  181 (228)
                      |+||.|+++..  ...+..+|.|+..-+....+.+.+. ....+.. ...+..|++ .+ -||.=...||.|||.+++.+
T Consensus       198 g~HWil~~~~Ki~~kiKC~iFNs~~~l~eNs~~~ii~~-ak~ag~~-~e~di~fIe-~n-LQqnVpngCGlFv~~aIq~l  273 (317)
T PRK14848        198 GDHWLLCLFYKLAEKIKCLIFNTYYDLNENTKQEIIEA-AKIAGIS-ENEDVNFIE-TN-LQNNVPNGCGLFCYHTIQLL  273 (317)
T ss_pred             CCcEEEEEhHHhhhhceEEEeecHhhhhhhHHHHHHHH-HHhhCcc-cCCceEEee-hh-hhhhCCCcchHHHHHHHHHH
Confidence            89999999875  3457888999976544334555443 1222321 124556654 33 34444678999999999966


Q ss_pred             HHH
Q 027072          182 CCW  184 (228)
Q Consensus       182 ~~~  184 (228)
                      -..
T Consensus       274 ~~~  276 (317)
T PRK14848        274 SNA  276 (317)
T ss_pred             Hhc
Confidence            553

>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.01  E-value=0.0019  Score=50.41  Aligned_cols=94  Identities=14%  Similarity=0.270  Sum_probs=48.4

Q ss_pred             EEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHH-----HHHH-hhcCcCCCCCCeeecCCCCC
Q 027072           89 IFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFS-----AVVG-FMGDSTSASNGKYLDCVDSP  162 (228)
Q Consensus        89 ~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~-----~l~~-~l~~~~~~~~~~~v~~~~~p  162 (228)
                      --.||..   ....||.||.-+..++..++++.||+.+=++.+ ++++-+     .|++ .+.. ...+=.+.+.-...-
T Consensus        21 cAIVNT~---~retGGvHWlA~Aw~P~s~t~YmFDPfGfsd~~-L~qiY~FeYe~llrRSAL~~-~~dRCv~LvkstqtV   95 (183)
T PF00770_consen   21 CAIVNTG---GRETGGVHWLAFAWDPRSRTFYMFDPFGFSDQK-LKQIYQFEYEGLLRRSALSS-TPDRCVTLVKSTQTV   95 (183)
T ss_dssp             EEEEESS----TTT--S-EEEEEEETTTTEEEEE-TT---HHH-HHHHH----HHHHHHHHHHH--TTSEEEEEEE-EE-
T ss_pred             eEEEecC---CcccCceeEEEEEecCCcceEEEeCCCCCCHHH-HHHHHhhhHHHHHHHHhhcC-CCCceEEEEecccee
Confidence            3346652   223479999999999999999999999865432 222221     1211 1220 011223333323445


Q ss_pred             CCCCCCccHHHHHHHHHHHHHHhhc
Q 027072          163 QQTNGYDCGVYVIAIARAICCWYES  187 (228)
Q Consensus       163 qQ~n~~DCGvfvl~~~~~l~~~~~~  187 (228)
                      |=+++-.||+|.|+|+.++.++..+
T Consensus        96 Q~p~SaaCGLFC~lFL~aF~~~p~~  120 (183)
T PF00770_consen   96 QCPCSAACGLFCCLFLHAFVHYPDN  120 (183)
T ss_dssp             S-TT---HHHHHHHHHHHHHH-TTS
T ss_pred             eccCchhHHHHHHHHHHHHHhCCCC
Confidence            5568999999999999999998755

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.

>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp

Probab=94.78  E-value=1.7  Score=34.65  Aligned_cols=87  Identities=11%  Similarity=0.156  Sum_probs=51.1

Q ss_pred             cEEEEeeecCCCcCcCCCCceeEEEEEE-cC--CCeEEEEeCCCCCCHHH-HHHHHHHHHHhhcCcCCCCCCeeecCCCC
Q 027072           86 KLVIFPVNDNDDMSLAEGGSHWSLIVYE-RN--GNVFVHHDSNHRMNKIK-ARKLFSAVVGFMGDSTSASNGKYLDCVDS  161 (228)
Q Consensus        86 ~~I~iPin~n~~~~~~~~~~HW~Llvv~-~~--~~~i~~~DSl~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~v~~~~~  161 (228)
                      -..++|+..        ++.|...+=|. ..  ...++.++|-.-.+... .....+.+.......  .....+ .+...
T Consensus        72 ~R~Iv~~~~--------~~~H~~a~Dvr~~~~~k~SlI~~Epa~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~-~~ie~  140 (177)
T PF03421_consen   72 WRAIVNLGG--------DGIHHVALDVRHTPNGKPSLIVFEPASFYGMKPALAGYTKLAEEARQKL--LPNAKF-AVIEM  140 (177)
T ss_pred             eEEEEeCCC--------CCCcEEEEEEeecCCCCceEEEEccccccCCcchhhhHHHHHHHHHhcc--CCCcEE-EEEec
Confidence            345666554        36676654444 22  35799999986433211 111112222222100  134554 34678


Q ss_pred             CCCCCCCccHHHHHHHHHHHHH
Q 027072          162 PQQTNGYDCGVYVIAIARAICC  183 (228)
Q Consensus       162 pqQ~n~~DCGvfvl~~~~~l~~  183 (228)
                      .-|+..+|||+|.|.+|....+
T Consensus       141 diQkS~~dC~IFsLs~AkK~~~  162 (177)
T PF03421_consen  141 DIQKSPSDCGIFSLSLAKKMYK  162 (177)
T ss_pred             ccccCcCcchhhHHHHHHHHhh
Confidence            9999999999999999998876

causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.

>PRK15371 effector protein YopJ; Provisional

Probab=92.45  E-value=6.3  Score=33.80  Aligned_cols=79  Identities=16%  Similarity=0.264  Sum_probs=45.7

Q ss_pred             CceeEEEEEEcC--CCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCCCCCCCCCccHHHHHHHHHHH
Q 027072          104 GSHWSLIVYERN--GNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAI  181 (228)
Q Consensus       104 ~~HW~Llvv~~~--~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~pqQ~n~~DCGvfvl~~~~~l  181 (228)
                      +.|...+=+...  ...|+.++|-...+...+ .+.-.++..+... ......+ .+...--|+-.+|||+|.|.+|...
T Consensus       107 ~~H~vavDvr~~~Gk~SIIvlEPa~~~~~~~a-~l~~rl~~~le~~-~l~~~~~-avie~d~QkS~~dC~mFSL~~AkK~  183 (287)
T PRK15371        107 GIHFSVIDYKHIDGKTSLILFEPANFNSMGPA-MLAIRTKTALERE-QLPDCHF-SMVEMDIQRSSSECGIFSLALAKKL  183 (287)
T ss_pred             cceEEEEEEeccCCCeEEEEECCccccccchH-HHHHHHHHHHHhc-cCCCceE-EEEecccccCcccchhhhHHHHHHH
Confidence            567655544443  347999999865321110 0111122222110 0134444 2355789999999999999999988


Q ss_pred             HHHh
Q 027072          182 CCWY  185 (228)
Q Consensus       182 ~~~~  185 (228)
                      .+.-
T Consensus       184 ~~e~  187 (287)
T PRK15371        184 YLER  187 (287)
T ss_pred             hhhh
Confidence            7753

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=85.88  E-value=6.4  Score=39.45  Aligned_cols=77  Identities=16%  Similarity=0.289  Sum_probs=44.2

Q ss_pred             EEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCCCCCCCCC
Q 027072           89 IFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGY  168 (228)
Q Consensus        89 ~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~pqQ~n~~  168 (228)
                      |+||-..-++  .....||..++ ..+.+..++||+|+....+..+.+   +..-+..   ....+.   .+-----|-.
T Consensus        49 fmpvltgv~p--~~~sghwimli-kg~gn~y~lfdplg~~sg~~y~ni---l~~~lp~---~~~lsv---ipn~~~ln~g  116 (1439)
T PF12252_consen   49 FMPVLTGVSP--RQDSGHWIMLI-KGQGNQYYLFDPLGKTSGEGYQNI---LARQLPQ---GSTLSV---IPNGPGLNMG  116 (1439)
T ss_pred             CceeecCcCC--CCcCceeEEEE-EcCCCceEEeccccccccccHHHH---HHHhCCC---CCeeee---CCCCCCcCcc
Confidence            7888764222  22578998765 566778999999997654333333   2222331   122222   2122233556


Q ss_pred             ccHHHHHHH
Q 027072          169 DCGVYVIAI  177 (228)
Q Consensus       169 DCGvfvl~~  177 (228)
                      -||+||--.
T Consensus       117 lcgywvas~  125 (1439)
T PF12252_consen  117 LCGYWVASV  125 (1439)
T ss_pred             chhhhhhhh
Confidence            799999754

There is little literature describing the family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
2bkq_A	212	Nedd8 Protease Length = 212		2e-29
1xt9_A	212	Crystal Structure Of Den1 In Complex With Nedd8 Len		4e-29
1euv_A	221	X-Ray Structure Of The C-Terminal Ulp1 Protease Dom		4e-07
1tgz_A	226	Structure Of Human Senp2 In Complex With Sumo-1 Len		7e-06
2hkp_A	221	Sumo Protease Ulp1 With The Catalytic Cysteine Oxid		8e-06
2ckg_A	225	The Structure Of Senp1 Sumo-2 Co-Complex Suggests A		6e-05
2xre_A	230	Detection Of Cobalt In Previously Unassigned Human		8e-05
2iyc_A	226	Senp1 Native Structure Length = 226		8e-05
2xph_A	238	Crystal Structure Of Human Senp1 With The Bound Cob		9e-05
2io0_A	232	Crystal Structure Of Human Senp2 In Complex With Pr		1e-04

>pdb|2BKQ|A Chain A, Nedd8 Protease Length = 212

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 7   DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
           D  +LSY D +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +
Sbjct: 2   DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQF 61
Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           I    +   +  F+EPL LP K++V   +NDN +   A GGSHWSL+VY ++ N F H+D
Sbjct: 62  IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGSHWSLLVYLQDKNSFFHYD 119
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
           S+ R N + A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI    A+
Sbjct: 120 SHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEAL 174
Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           C   ++   +  E +      + +T   +++ R E   LI  L +K
Sbjct: 175 C---QNFFRQQTESLL-----QLLTPAYITKKRGEWKDLIATLAKK 212

>pdb|1XT9|A Chain A, Crystal Structure Of Den1 In Complex With Nedd8 Length = 212

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 7   DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
           D  +LSY D +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +
Sbjct: 2   DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQF 61
Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           I    +   +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+D
Sbjct: 62  IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
           S+ R N + A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI    A+
Sbjct: 120 SHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEAL 174
Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
           C   ++   +  E +      + +T   +++ R E   LI  L +K
Sbjct: 175 C---QNFFRQQTESLL-----QLLTPAYITKKRGEWKDLITTLAKK 212

>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 4   SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF- 62
           S  + ++++ +++ +   D   L+   +LND IIEF+  Y+            P ++AF 
Sbjct: 21  SRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS--------TPNTVAFN 72
Query: 63  --WILNCPDATY--LKEFIEPLKLPEKKL--VIFPVNDNDDMSLAEGGSHWSLIVYERNG 116
             +  N  +  Y  ++ +++  K    KL  +  P+N N         SHW+L + +   
Sbjct: 73  SFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQ--------SHWALGIIDLKK 124
Query: 117 NVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV--DSPQQTNGYDCGVYV 174
               + DS        +  + + +  ++ + +  + G+  D +  D PQQ NGYDCG+YV
Sbjct: 125 KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYV 184

>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 25/193 (12%)
Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           +G    D+ + S   + + R D+  L   ++LND +I FY + L      Q    +    
Sbjct: 17  LGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFS 76
Query: 61  AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
            F+        Y  +K + + + L E+++++ P++            HWSL+V +     
Sbjct: 77  TFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRK---------VHWSLVVIDLRKKC 127
Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
             + DS  +    K  ++   ++ ++ D +       L+ +          + PQQ NG 
Sbjct: 128 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGS 183
Query: 169 DCGVYVIAIARAI 181
           DCG++    A  I
Sbjct: 184 DCGMFTCKYADYI 196

>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 4   SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF- 62
           S  + ++++ +++ +   D   L+   +LND IIEF+  Y+            P ++AF 
Sbjct: 21  SRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS--------TPNTVAFN 72
Query: 63  --WILNCPDATY--LKEFIEPLKLPEKKL--VIFPVNDNDDMSLAEGGSHWSLIVYERNG 116
             +  N  +  Y  ++ +++  K    KL  +  P+N N         SHW+L + +   
Sbjct: 73  SFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQ--------SHWALGIIDLKK 124
Query: 117 NVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV--DSPQQTNGYDCGVYV 174
               + DS        +  + + +  ++ + +  + G+  D +  D PQQ NGYD G+YV
Sbjct: 125 KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDXGIYV 184

>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 17/187 (9%)
Query: 3   KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
           ++   D++LS    + + R D+  L+   +LND II FY + L      + +  V     
Sbjct: 18  RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 77
Query: 62  FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
           F+      A Y     + +K   KK+ +F V    D+ L     G HW L V +      
Sbjct: 78  FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 128
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS--PQQTNGYDCGVYV 174
            ++DS   +N    R L   +     D       +NG  L    S  PQQ NG DCG++ 
Sbjct: 129 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQIPQQMNGSDCGMFA 188
Query: 175 IAIARAI 181
              A  I
Sbjct: 189 CKYADCI 195

>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Query: 3   KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
           ++   D++LS    + + R D+  L+   +LND II FY + L      + +  V     
Sbjct: 22  RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 81
Query: 62  FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
           F+      A Y     + +K   KK+ +F V    D+ L     G HW L V +      
Sbjct: 82  FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 132
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
            ++DS   +N    R L   +     D       +NG  L    S   PQQ NG DCG++
Sbjct: 133 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 192
Query: 174 VIAIARAI 181
               A  I
Sbjct: 193 ACKYADCI 200

>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Query: 3   KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
           ++   D++LS    + + R D+  L+   +LND II FY + L      + +  V     
Sbjct: 18  RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 77
Query: 62  FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
           F+      A Y     + +K   KK+ +F V    D+ L     G HW L V +      
Sbjct: 78  FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 128
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
            ++DS   +N    R L   +     D       +NG  L    S   PQQ NG DCG++
Sbjct: 129 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 188
Query: 174 VIAIARAI 181
               A  I
Sbjct: 189 ACKYADCI 196

>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Query: 3   KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
           ++   D++LS    + + R D+  L+   +LND II FY + L      + +  V     
Sbjct: 30  RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 89
Query: 62  FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
           F+      A Y     + +K   KK+ +F V    D+ L     G HW L V +      
Sbjct: 90  FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 140
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
            ++DS   +N    R L   +     D       +NG  L    S   PQQ NG DCG++
Sbjct: 141 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 200
Query: 174 VIAIARAI 181
               A  I
Sbjct: 201 ACKYADCI 208

>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 78/193 (40%), Gaps = 25/193 (12%)
Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
           +G    D+ + S   + + R D+  L   ++LND +I FY + L      Q    +    
Sbjct: 23  LGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFS 82
Query: 61  AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
            F+        Y  +K + + + L E+++++ P++            HWSL+V +     
Sbjct: 83  TFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRK---------VHWSLVVIDLRKKC 133
Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
             + DS  +    K  ++   ++ ++ D +       L+ +          + PQQ NG 
Sbjct: 134 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGS 189
Query: 169 DCGVYVIAIARAI 181
           D G++    A  I
Sbjct: 190 DSGMFTCKYADYI 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	5e-46
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	2e-31
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	6e-28
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	2e-25
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	4e-22
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	1e-06
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	7e-05

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score =  151 bits (382), Expect = 5e-46
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 16/224 (7%)

Query: 7   DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQ---DILLVPPSIAFW 63
           D  +LSY D +LR+SD+ +L  P +LND II F F Y ++         +  + P +  +
Sbjct: 2   DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQF 61

Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           I    +   +  F+EPL LP K++V   +NDN +   A GGSHWSL+VY ++ N F H+D
Sbjct: 62  IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGSHWSLLVYLQDKNSFFHYD 119

Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICC 183
           S+ R N + A+++   +  F+G                P Q N YDCG+YVI    A+C 
Sbjct: 120 SHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKA---PAQQNSYDCGMYVICNTEALCQ 176

Query: 184 WYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
            +   + +         + + +T   +++ R E   LI  L +K
Sbjct: 177 NFFRQQTES--------LLQLLTPAYITKKRGEWKDLIATLAKK 212

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186

 Score =  112 bits (282), Expect = 2e-31
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 26/197 (13%)

Query: 31  FLNDRIIEFYFSYLSSCLVSQD----ILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKK 86
           +L D  +  Y   L+  L  +     +      +   + +       +            
Sbjct: 4   WLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDIPP 63

Query: 87  LVIFPVNDNDDMSLAEGGSHWSLIVYER---NGNVFVHHDSNHRMNKIKARKLFSAVVGF 143
           +V  P+N           +HWSL+V +R   +     H+DS       + R L       
Sbjct: 64  IVFLPINQP--------NAHWSLLVVDRRNKDAVAAYHYDS-MAQKDPQQRYLADMAAYH 114

Query: 144 MGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKE 203
           +G        +    +    Q++GY  G +V+     +           A G   + ++ 
Sbjct: 115 LGLD-----YQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEP 169

Query: 204 QVTSTVVSQMRKEILQL 220
                    +R  + Q 
Sbjct: 170 DRG-----LIRDRLAQA 181

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score =  104 bits (261), Expect = 6e-28
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 27/221 (12%)

Query: 3   KSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF 62
            S  + ++++ +++ +   D   L+   +LND IIEF+  Y+        +         
Sbjct: 20  ASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS-TPNTVAFNSFFYTN 78

Query: 63  WILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHH 122
                          +  ++ +   +  P+N N         SHW+L + +       + 
Sbjct: 79  LSERGYQGVRRWMKRKKTQIDKLDKIFTPINLN--------QSHWALGIIDLKKKTIGYV 130

Query: 123 DSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLD--CVDSPQQTNGYDCGVYVIAIARA 180
           DS        +  + + +  ++ + +  + G+  D   +D PQQ NGYDCG+YV      
Sbjct: 131 DSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLY 190

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLI 221
                       +      F  +         MR+ I  LI
Sbjct: 191 G-----------SADAPLDFDYKDAIR-----MRRFIAHLI 215

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 99.1 bits (246), Expect = 2e-25
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVP--P 58
                 D+ +     + + R D+  L+   +LND II FY + L      + +  V    
Sbjct: 29  FRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFN 88

Query: 59  SIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
           +  F  L       +K + + + +    +++ P++          G HW L V +     
Sbjct: 89  TFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIH---------LGVHWCLAVVDFRKKN 139

Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGD------STSASNGKYLDCVDSPQQTNGYDCGV 172
             ++DS   +N    R L   +     D       T+          + PQQ NG DCG+
Sbjct: 140 ITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGM 199

Query: 173 YVIAIARAIC 182
           +    A  I 
Sbjct: 200 FACKYADCIT 209

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 89.5 bits (221), Expect = 4e-22
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 17/190 (8%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV--SQDILLVPP 58
           +G    D+ + S   + + R D+  L   ++LND +I FY + L           L V  
Sbjct: 17  LGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFS 76

Query: 59  SIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
           +  +  L       +K + + + L E+++++ P++            HWSL+V +     
Sbjct: 77  TFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRK---------VHWSLVVIDLRKKC 127

Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDS------TSASNGKYLDCVDSPQQTNGYDCGV 172
             + DS  +        L   +                     +   + PQQ NG DCG+
Sbjct: 128 LKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGM 187

Query: 173 YVIAIARAIC 182
           +    A  I 
Sbjct: 188 FTCKYADYIS 197

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 158 CVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEI 217
           C   P+Q N  DCGVY++    +       +            +++     V+   R++I
Sbjct: 253 CPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELP------IHLEKWFPRHVIKTKREDI 306

Query: 218 LQLIKGLMEK 227
            +LI  L  +
Sbjct: 307 RELILKLHLQ 316

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 39/250 (15%), Positives = 74/250 (29%), Gaps = 51/250 (20%)

Query: 7   DDKILSY------NDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDIL---LVP 57
             K++ Y        + +   DL+ L    FLND II+FY  YL     S +++    + 
Sbjct: 18  VQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIF 77

Query: 58  PSIAFWILNCPDATY----------------LKEFIEPLKLPEKKLVIFPVNDNDDMSLA 101
            S  +  L   +                   ++ +   + +  K  +  PVN++      
Sbjct: 78  SSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNES------ 131

Query: 102 EGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGD------STSASNGKY 155
              SHW L V          ++   +    +++   S       D      ST + + + 
Sbjct: 132 ---SHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAED 188

Query: 156 LDCVDSPQQTNGYDCGVYVIAIARAICCW-----------YESSEHKDAEGMWFSFVKEQ 204
               +S        C    I I  ++              Y   E +        F K  
Sbjct: 189 SQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTN 248

Query: 205 VTSTVVSQMR 214
           +        +
Sbjct: 249 MVDLCPKVPK 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	100.0
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	100.0
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	100.0
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	100.0
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	100.0
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	100.0
4ekf_A	204	Adenain; alpha and beta protein (A+B), hydrolase;	97.38

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=100.00  E-value=3.8e-49  Score=322.51  Aligned_cols=208  Identities=35%  Similarity=0.654  Sum_probs=182.5

Q ss_pred             CCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhcc---CCCeeeeChhhhHHHhcCCChHHHHHhhccCCCC
Q 027072            7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCPDATYLKEFIEPLKLP   83 (228)
Q Consensus         7 ~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~---~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~   83 (228)
                      ++++++|+|++|+.+|+++|.+++||||++|+||+++|.+...   ..+++|++|+++|++.++++++.+++|+++++++
T Consensus         2 d~~~l~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~~~~~v~~~~~~~~l~   81 (212)
T 2bkr_A            2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLP   81 (212)
T ss_dssp             CCEEEEETTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGG
T ss_pred             CCEEEEECCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCCCHHHHHHHhcccccc
Confidence            6899999999999999999999999999999999999998652   4679999999999999888888999999999999


Q ss_pred             CCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCCCC
Q 027072           84 EKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQ  163 (228)
Q Consensus        84 ~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~pq  163 (228)
                      ++++||+|||+|++++  .+++||+|+||+.++++++|||||++.+...++.+++.++.+++.+.  .++.+.. ..+||
T Consensus        82 ~~~~i~iPIn~n~~~~--~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~--~~~~~~~-~~~Pq  156 (212)
T 2bkr_A           82 NKRVVFLAINDNSNQA--AGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKG--DKLAFVE-EKAPA  156 (212)
T ss_dssp             GCSEEEEEEECCCSSS--SBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTT--CCCCEEE-CCCCC
T ss_pred             cCCEEEEEEecCCCCC--CCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHHHHhCCcc--ccceEeE-CCCCC
Confidence            9999999999976654  57999999999999999999999999998888889999999998653  2445654 78999


Q ss_pred             CCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhhhc
Q 027072          164 QTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK  227 (228)
Q Consensus       164 Q~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~~~  227 (228)
                      |+||+|||+|||+||++++++...+..       ++ ....++++.|+++|++|+++|.+|.+|
T Consensus       157 Q~N~~DCGvfvl~~~~~l~~~~~~~~~-------~~-~~~~~~~~~i~~~R~~i~~lI~~L~~~  212 (212)
T 2bkr_A          157 QQNSYDCGMYVICNTEALCQNFFRQQT-------ES-LLQLLTPAYITKKRGEWKDLIATLAKK  212 (212)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHSCCC-------CC-HHHHCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhhhcCc-------cc-ccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999998755321       11 235778999999999999999999763

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=100.00  E-value=8.3e-40  Score=269.57  Aligned_cols=194  Identities=21%  Similarity=0.282  Sum_probs=158.3

Q ss_pred             CCCCCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhcc---CCCeeeeChhhhHHHhcCC--ChHHHHHh
Q 027072            2 GKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCP--DATYLKEF   76 (228)
Q Consensus         2 ~~~~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~---~~~i~~~~p~~~~~~~~~~--~~~~~~~~   76 (228)
                      +...++++++++.++.|+.+|+.+|.+++||||+||+||+++|.++..   .++++++++   +++.++.  +++.+++|
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s---~f~~~l~~~~~~~v~~w   94 (226)
T 1th0_A           18 GHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFST---FFYPKLKSGGYQAVKRW   94 (226)
T ss_dssp             SSSCTTCEEEEETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCT---THHHHHHHHTGGGTGGG
T ss_pred             ccCCccceeeccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhccCCcEEEEeH---HHHHHhhhcccHHHHHH
Confidence            346789999999999999999999999999999999999999987543   357888864   3443332  25678999


Q ss_pred             hccCCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCc----CCCCC
Q 027072           77 IEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDS----TSASN  152 (228)
Q Consensus        77 ~~~~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~----~~~~~  152 (228)
                      +++.+++++++||+|||.         ++||+|+||+.++++|+|||||++.+...++.+.+.+.......    ....+
T Consensus        95 ~~~~~l~~~~~i~iPin~---------~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~~~~~  165 (226)
T 1th0_A           95 TKGVNLFEQEIILVPIHR---------KVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLE  165 (226)
T ss_dssp             GTTCCGGGSSEEEEEEEE---------TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCCGGG
T ss_pred             hhcCCcccCCEEEEeEEe---------CcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence            999999999999999997         79999999999999999999999988777777777776544211    11245


Q ss_pred             Ceee--cCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHH
Q 027072          153 GKYL--DCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKG  223 (228)
Q Consensus       153 ~~~v--~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~  223 (228)
                      |++.  ....+|||.||+|||+|||+||++++++.+                ..++++.+..+|++|...|.+
T Consensus       166 w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~----------------~~f~q~dm~~~R~~~~~ei~~  222 (226)
T 1th0_A          166 WTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKP----------------ITFTQHQMPLFRKKMVWEILH  222 (226)
T ss_dssp             CEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCC----------------CCCCGGGHHHHHHHHHHHHHH
T ss_pred             ceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCC----------------CccChhhHHHHHHHHHHHHHh
Confidence            7764  246899999999999999999999988421                256788899999999988764

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=100.00  E-value=1.2e-38  Score=264.56  Aligned_cols=191  Identities=20%  Similarity=0.292  Sum_probs=155.2

Q ss_pred             CCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhccC---CCeeeeChhhhHHHhcC--CChHHHHHhhcc
Q 027072            5 AADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVS---QDILLVPPSIAFWILNC--PDATYLKEFIEP   79 (228)
Q Consensus         5 ~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~~---~~i~~~~p~~~~~~~~~--~~~~~~~~~~~~   79 (228)
                      ++++.+.+..++.|+.+|+.+|.+++||||++|+||+++|.++...   .+++++++   |++.++  .+++.+++|+++
T Consensus        33 ~~~~vl~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s---ff~~~l~~~~~~~v~~w~~~  109 (238)
T 2xph_A           33 NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT---FFFTKLKTAGYQAVKRWTKK  109 (238)
T ss_dssp             CTTCCCEEETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCT---TTTHHHHTTCHHHHTTTTTT
T ss_pred             ChhheeecCCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceeeeec---HHHHHhhhcccHHHHHHhcc
Confidence            3445555556999999999999999999999999999999876542   45676654   444333  236789999999


Q ss_pred             CCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhc----CcCCCCCCee
Q 027072           80 LKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMG----DSTSASNGKY  155 (228)
Q Consensus        80 ~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~----~~~~~~~~~~  155 (228)
                      ++++++++||+|||.         ++||+|+||+.++++++|||||++.+...++.+.+.++...+    ......+|++
T Consensus       110 ~~l~~~~~i~iPin~---------~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~~~~~w~~  180 (238)
T 2xph_A          110 VDVFSVDILLVPIHL---------GVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQL  180 (238)
T ss_dssp             CCGGGSSEEEEEEEE---------TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCCCCTTCEE
T ss_pred             CCcccCCEEEEcccC---------CCceEEEEEEcccceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCcCccccee
Confidence            999999999999997         799999999999999999999999988777777777766543    2223457776


Q ss_pred             e--cCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHH
Q 027072          156 L--DCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKG  223 (228)
Q Consensus       156 v--~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~  223 (228)
                      .  ....+|||.||+|||+|||+||++++++.+                ..++++.+..+|++|...|.+
T Consensus       181 ~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~----------------~~f~q~dm~~~R~~m~~eil~  234 (238)
T 2xph_A          181 FSKKSQEIPQQMNGSDCGMFACKYADCITKDRP----------------INFTQQHMPYFRKRMVWEILH  234 (238)
T ss_dssp             EECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCC----------------CCCCGGGHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCC----------------CCcChhhHHHHHHHHHHHHHh
Confidence            4  247899999999999999999999998421                256788899999999988865

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=100.00  E-value=1.3e-38  Score=261.51  Aligned_cols=190  Identities=21%  Similarity=0.351  Sum_probs=149.8

Q ss_pred             CCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhccCCCeeeeChhhhHHHhcCC--ChHHHHHhhc--cC
Q 027072            5 AADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCP--DATYLKEFIE--PL   80 (228)
Q Consensus         5 ~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~~~~i~~~~p~~~~~~~~~~--~~~~~~~~~~--~~   80 (228)
                      .+++.+++..++.|+.+|+.+|.+++||||+||+||+++|.+..+  +++++++   +++.++.  +++.+++|++  +.
T Consensus        22 ~~~~~l~~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~~--~~~~f~s---~f~~~l~~~~~~~v~rw~~~~~~   96 (221)
T 1euv_A           22 RENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTP--NTVAFNS---FFYTNLSERGYQGVRRWMKRKKT   96 (221)
T ss_dssp             SSCCEEEEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHST--TEEECCT---HHHHHHHHHTGGGTTTTTGGGTS
T ss_pred             CCCeeeecCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC--CeEEEEc---HHHHHhhhhccHHHHHHHHhccC
Confidence            457788999999999999999999999999999999999987653  5666653   4444332  3567788886  56


Q ss_pred             CCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCC-CHHHHHHHHHHHHHhhcCcC---CCCCCeee
Q 027072           81 KLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRM-NKIKARKLFSAVVGFMGDST---SASNGKYL  156 (228)
Q Consensus        81 ~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~-~~~~~~~i~~~l~~~l~~~~---~~~~~~~v  156 (228)
                      +++++++||+|||.|        ++||+|+|++.++++|+|||||++. +... ..+++.++.++..+.   ...+++++
T Consensus        97 ~~~~~~~i~iPin~~--------~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~-~~i~~~l~~~l~~e~~~~~~~~~~~~  167 (221)
T 1euv_A           97 QIDKLDKIFTPINLN--------QSHWALGIIDLKKKTIGYVDSLSNGPNAMS-FAILTDLQKYVMEESKHTIGEDFDLI  167 (221)
T ss_dssp             CGGGCSEEEEEEEET--------TTEEEEEEEETTTTEEEEECSSCCSCCHHH-HHHHHHHHHHHHHHTTSSSCTTCEEE
T ss_pred             CcccCCEEEEEEEcC--------CCeEEEEEEEcCCCEEEEEecCCCCCcchH-HHHHHHHHHHHHHHHHHhcCCCceEe
Confidence            899999999999983        7999999999999999999999854 4422 234455555543211   13457775


Q ss_pred             cCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhh
Q 027072          157 DCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLM  225 (228)
Q Consensus       157 ~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~  225 (228)
                      . ..+|||.||+|||+|||+||++++++.+                -.++++.+..+|++|...|.+..
T Consensus       168 ~-~~~PqQ~N~~DCGvfv~~~~~~~~~~~~----------------l~f~~~d~~~~R~~i~~~Il~~~  219 (221)
T 1euv_A          168 H-LDCPQQPNGYDCGIYVCMNTLYGSADAP----------------LDFDYKDAIRMRRFIAHLILTDA  219 (221)
T ss_dssp             E-ECCCCCSSSSTHHHHHHHHHHHHHTTCC----------------CCCCHHHHHHHHHHHHHHHHTTT
T ss_pred             e-cCCCCCCCCcCHHHHHHHHHHHHhCCCC----------------CCcCHHHHHHHHHHHHHHHHhcc
Confidence            4 7899999999999999999999988421                25678999999999999998653

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=100.00  E-value=6.3e-39  Score=256.69  Aligned_cols=173  Identities=16%  Similarity=0.190  Sum_probs=135.3

Q ss_pred             CCCccChHHHHHHHHHHhhhcc---C-CCeeeeChhhhHHHhcCCC--hHHHHHhhccCCCCCCcEEEEeeecCCCcCcC
Q 027072           28 GPYFLNDRIIEFYFSYLSSCLV---S-QDILLVPPSIAFWILNCPD--ATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA  101 (228)
Q Consensus        28 ~~~wLnD~iI~~~~~~L~~~~~---~-~~i~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~I~iPin~n~~~~~~  101 (228)
                      +++||||+||+||+++|.++..   . ..++|++|++++++...++  .+.+.+|++..++  +++||+|||.       
T Consensus         1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~-------   71 (186)
T 2oix_A            1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQ-------   71 (186)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEE-------
T ss_pred             CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeC-------
Confidence            4799999999999999998653   2 2399999998888876652  1255666665443  9999999998       


Q ss_pred             CCCceeEEEEEEcCCCeE---EEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCCCCCCCCCccHHHHHHHH
Q 027072          102 EGGSHWSLIVYERNGNVF---VHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIA  178 (228)
Q Consensus       102 ~~~~HW~Llvv~~~~~~i---~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~pqQ~n~~DCGvfvl~~~  178 (228)
                       +|+||+|+||+.+++++   +|||||++.+.. ++.+++.++.+++.+    ..++.. ..+|||.||+|||+|||+||
T Consensus        72 -~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~-~~~l~~~l~~~l~~~----~~~~~~-~~~PqQ~Ng~DCGvfv~~~~  144 (186)
T 2oix_A           72 -PNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ-QRYLADMAAYHLGLD----YQQTHE-MPIAIQSDGYSAGDHVLTGI  144 (186)
T ss_dssp             -TTTEEEEEEEECSSTTSCEEEEECCCSSCCHH-HHHHHHHHHHHTTCC----GGGCEE-ECBCCCC--CCHHHHHHHHH
T ss_pred             -CCCccEEEEEECCCCeeeeeEEEcCCCCCCHH-HHHHHHHHHHHhCCC----cccccc-CCCCCCCCCCCHHHHHHHHH
Confidence             48999999999999999   999999987765 677888898888743    223433 78999999999999999999


Q ss_pred             HHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhh
Q 027072          179 RAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLM  225 (228)
Q Consensus       179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~  225 (228)
                      ++++++...+..  .       -...+++++|+++|++|+++|.++-
T Consensus       145 ~~l~~~~~~~~~--~-------~~~~~~~~~i~~~R~~i~~lI~~~~  182 (186)
T 2oix_A          145 EVLAHRVLDGTF--D-------YAGGRDLTDIEPDRGLIRDRLAQAE  182 (186)
T ss_dssp             HHHHHHHHHTCT--T-------STTTTCBTTCCCCHHHHHHHHHCC-
T ss_pred             HHHHHHHhhcCc--c-------CCCcCCHHHHHHHHHHHHHHHHhcc
Confidence            999998765432  1       1235567788999999999999873

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=264.31  Aligned_cols=202  Identities=23%  Similarity=0.305  Sum_probs=151.1

Q ss_pred             CCCceEEE------CCeEEehhhhhccCCCCccChHHHHHHHHHHh-hhcc---CCCeeeeChhhhHHHhcCCC------
Q 027072            6 ADDKILSY------NDVVLRRSDLDILSGPYFLNDRIIEFYFSYLS-SCLV---SQDILLVPPSIAFWILNCPD------   69 (228)
Q Consensus         6 ~~~~v~~~------~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~-~~~~---~~~i~~~~p~~~~~~~~~~~------   69 (228)
                      |-..++.|      +|+.|+.+|+.+|.+++||||+||+||+++|. ++.+   ..++++++   +||+.++..      
T Consensus        17 ~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~Fn---SFFy~kL~~~~~~~~   93 (323)
T 3eay_A           17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFS---SFFYKCLTRKENNLT   93 (323)
T ss_dssp             CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECC---THHHHHHSCC-----
T ss_pred             CcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEc---hHHHHHHHhcccccc
Confidence            44555553      48999999999999999999999999999996 3333   24688775   456554431      


Q ss_pred             ------------hHHHHHhhccCCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCC---------------------
Q 027072           70 ------------ATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNG---------------------  116 (228)
Q Consensus        70 ------------~~~~~~~~~~~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~---------------------  116 (228)
                                  ++.+++|+++++++++++||||||.         +.||+|+||+.+.                     
T Consensus        94 ~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~---------~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~  164 (323)
T 3eay_A           94 EDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNE---------SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQ  164 (323)
T ss_dssp             ---CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEE---------TTEEEEEEEECTTCSSCBCC--------------
T ss_pred             cccccchhHHHHHHHHHHHHhhcccccCCEEEEecCC---------CCceEEEEEecCCccccccccccccccccccccc
Confidence                        3467899999999999999999998         6999999999863                     


Q ss_pred             -----------------------------------------CeEEEEeCCCCCC-HHHHHHHHHHHHHhhcCc------C
Q 027072          117 -----------------------------------------NVFVHHDSNHRMN-KIKARKLFSAVVGFMGDS------T  148 (228)
Q Consensus       117 -----------------------------------------~~i~~~DSl~~~~-~~~~~~i~~~l~~~l~~~------~  148 (228)
                                                               ++|.|||||++.. ....+.+.++|.......      .
T Consensus       165 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f  244 (323)
T 3eay_A          165 SQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQF  244 (323)
T ss_dssp             -----------------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCC
Confidence                                                     2599999999864 444455555554433211      1


Q ss_pred             CCCCCeeecCCCCCCCCCCCccHHHHHHHHHHHHHHhhcc-cCcccccchhhhhccccChHHHHHHHHHHHHHHHHhhhc
Q 027072          149 SASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESS-EHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK  227 (228)
Q Consensus       149 ~~~~~~~v~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~~~  227 (228)
                      ....|..+ ++.+|||.|++|||+|||+||++++++.... ......       ..-+++..|+.+|++|+++|.+|..+
T Consensus       245 ~~~~~~~~-~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~~-------~~wf~~~~i~~kR~ei~~LI~~L~~~  316 (323)
T 3eay_A          245 SKTNMVDL-CPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHL-------EKWFPRHVIKTKREDIRELILKLHLQ  316 (323)
T ss_dssp             CTTTSCEE-CCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCBC-------TTSSCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CHhHceec-cCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccccccc-------ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            12345544 4679999999999999999999999976431 111122       23457999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	1e-40
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	6e-25
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	3e-24
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	8e-24

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 1e-40
 Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 16/224 (7%)

Query: 7   DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQD---ILLVPPSIAFW 63
           D  +LSY D +LR+SD+ +L  P +LND II F F Y ++         +  + P +  +
Sbjct: 2   DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQF 61

Query: 64  ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
           I    +   +  F+EPL LP K++V   +NDN + +   GGSHWSL+VY ++ N F H+D
Sbjct: 62  IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQA--AGGSHWSLLVYLQDKNSFFHYD 119

Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICC 183
           S+ R N + A+++   +  F+G                P Q N YDCG+YVI    A+C 
Sbjct: 120 SHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKA---PAQQNSYDCGMYVICNTEALCQ 176

Query: 184 WYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
            +   +           + + +T   +++ R E   LI  L +K
Sbjct: 177 NFFRQQ--------TESLLQLLTPAYITKKRGEWKDLIATLAKK 212

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.6 bits (237), Expect = 6e-25
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 27/221 (12%)

Query: 3   KSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF 62
            S  + ++++ +++ +   D   L+   +LND IIEF+  Y+        +         
Sbjct: 20  ASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS-TPNTVAFNSFFYTN 78

Query: 63  WILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHH 122
                          +  ++ +   +  P+N N         SHW+L + +       + 
Sbjct: 79  LSERGYQGVRRWMKRKKTQIDKLDKIFTPINLN--------QSHWALGIIDLKKKTIGYV 130

Query: 123 DSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV--DSPQQTNGYDCGVYVIAIARA 180
           DS        +  + + +  ++ + +  + G+  D +  D PQQ NGYDCG+YV      
Sbjct: 131 DSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLY 190

Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLI 221
                       +      F  +         MR+ I  LI
Sbjct: 191 G-----------SADAPLDFDYKDAIR-----MRRFIAHLI 215

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 3e-24
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 17/190 (8%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVP--P 58
           +G    D+ + S   + + R D+  L   ++LND +I FY + L      Q    +    
Sbjct: 17  LGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFS 76

Query: 59  SIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
           +  +  L       +K + + + L E+++++ P++            HWSL+V +     
Sbjct: 77  TFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKV---------HWSLVVIDLRKKC 127

Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGD------STSASNGKYLDCVDSPQQTNGYDCGV 172
             + DS  +        L   +            +        +   + PQQ NG DCG+
Sbjct: 128 LKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGM 187

Query: 173 YVIAIARAIC 182
           +    A  I 
Sbjct: 188 FTCKYADYIS 197

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (230), Expect = 8e-24
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 17/190 (8%)

Query: 1   MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
                 D+ +     + + R D+  L+   +LND II FY + L      + +  V    
Sbjct: 17  FRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFN 76

Query: 61  AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
            F+      A Y  +K + + + +    +++ P++            HW L V +     
Sbjct: 77  TFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLG---------VHWCLAVVDFRKKN 127

Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGD------STSASNGKYLDCVDSPQQTNGYDCGV 172
             ++DS   +N    R L   +     D       T+          + PQQ NG D G+
Sbjct: 128 ITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGM 187

Query: 173 YVIAIARAIC 182
           +    A  I 
Sbjct: 188 FACKYADCIT 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	100.0
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	100.0
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	100.0
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	100.0
d1nlna_	203	Human adenovirus 2 proteinase, adenain {Mastadenov	96.93

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-44  Score=291.69  Aligned_cols=208  Identities=35%  Similarity=0.643  Sum_probs=177.2

Q ss_pred             CCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhc-c--CCCeeeeChhhhHHHhcCCChHHHHHhhccCCCC
Q 027072            7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCL-V--SQDILLVPPSIAFWILNCPDATYLKEFIEPLKLP   83 (228)
Q Consensus         7 ~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~-~--~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~   83 (228)
                      ++++++|+++.|+.+|+++|.+++||||++|+||+++|.+.. +  ...++|++|+.++++....+.+.+++|+++.+++
T Consensus         2 ~pi~~~~~d~~l~~~D~~~L~~~~WLND~iId~y~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (212)
T d2bkra1           2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLP   81 (212)
T ss_dssp             CCEEEEETTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGG
T ss_pred             CCEEEEEeCeeeeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhhccccCcEEEEChHHHHHHhccccHHHHHHHHhccChh
Confidence            579999999999999999999999999999999999998643 2  4579999999888887777788999999999999


Q ss_pred             CCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCCCC
Q 027072           84 EKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQ  163 (228)
Q Consensus        84 ~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~pq  163 (228)
                      ++++||+|||.+...  ..+|+||+|+|++.+.+++++|||+++.+...++.+++.+...++...  .++.+. ...+||
T Consensus        82 ~~~~ifiPIn~~~~~--~~~g~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~-~~~~p~  156 (212)
T d2bkra1          82 NKRVVFLAINDNSNQ--AAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKG--DKLAFV-EEKAPA  156 (212)
T ss_dssp             GCSEEEEEEECCCSS--SSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTT--CCCCEE-ECCCCC
T ss_pred             hccEEEEeccccccc--ccCcceeeeeeeccccceEEEecCCCcCCHHHHHHHHHHHHHHhcccc--Cceeee-ecccCC
Confidence            999999999987543  346899999999999999999999999988888888888888887532  345554 378999


Q ss_pred             CCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhhhc
Q 027072          164 QTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK  227 (228)
Q Consensus       164 Q~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~~~  227 (228)
                      |+||+|||+|||+||++++++...+..    ..    ....+++++|+++|++|+++|.+|.++
T Consensus       157 Q~N~~DCGvfv~~~~~~l~~~~~~~~~----~~----~~~~~~~~~i~~~R~~l~~lI~~L~~~  212 (212)
T d2bkra1         157 QQNSYDCGMYVICNTEALCQNFFRQQT----ES----LLQLLTPAYITKKRGEWKDLIATLAKK  212 (212)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHSCCC----CC----HHHHCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCChHHHHHHHHHHHHHhcccccc----hh----hhhcCCHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999998765321    11    224678999999999999999999875

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-38  Score=256.69  Aligned_cols=190  Identities=20%  Similarity=0.333  Sum_probs=149.8

Q ss_pred             CCCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhccCCCeeeeChhhhHHHhcCC--ChHHHHHhh--cc
Q 027072            4 SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCP--DATYLKEFI--EP   79 (228)
Q Consensus         4 ~~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~~~~i~~~~p~~~~~~~~~~--~~~~~~~~~--~~   79 (228)
                      ++++..+++..++.|+.+|+++|.+++||||.+|++|+++|.+.++  +.+++++.   ++..+.  ....+++|+  ++
T Consensus        21 ~~~~~~~~~~~~~~it~~Dl~~L~~~~WLnD~iIn~y~~~l~~~~~--~~~~~~s~---f~~~l~~~~~~~~~~w~~~~~   95 (221)
T d1euva_          21 SRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTP--NTVAFNSF---FYTNLSERGYQGVRRWMKRKK   95 (221)
T ss_dssp             CSSCCEEEEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHST--TEEECCTH---HHHHHHHHTGGGTTTTTGGGT
T ss_pred             CCCCceeeecCCcEEeHHHHhhcCCCcccCcHHHHHHHHHHHhcCC--CeEEeccH---HHHhHhhhchHHHHHHHHhcc
Confidence            4567888999999999999999999999999999999999998765  34555433   322221  245566676  45


Q ss_pred             CCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCcC---CCCCCeee
Q 027072           80 LKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDST---SASNGKYL  156 (228)
Q Consensus        80 ~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~---~~~~~~~v  156 (228)
                      .+++.+++||+|||.+        ++||+|+|++.+++++++||||++.+......+.+.+..++....   ...++++.
T Consensus        96 ~~~~~~~~i~iPin~~--------~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~  167 (221)
T d1euva_          96 TQIDKLDKIFTPINLN--------QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLI  167 (221)
T ss_dssp             SCGGGCSEEEEEEEET--------TTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEE
T ss_pred             cchhhcceeEeeEecc--------cceEEEEEeeccccceeeeccccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCCeee
Confidence            6889999999999983        899999999999999999999988765555566666666553221   23556775


Q ss_pred             cCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHH
Q 027072          157 DCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKG  223 (228)
Q Consensus       157 ~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~  223 (228)
                      . ..+|||+||+|||+|||+||++++++.+                ..+++..+.++|+.|+..|.+
T Consensus       168 ~-~~~PqQ~N~~DCGvfvl~~~~~~~~~~~----------------~~~~q~d~~~~R~~i~~~il~  217 (221)
T d1euva_         168 H-LDCPQQPNGYDCGIYVCMNTLYGSADAP----------------LDFDYKDAIRMRRFIAHLILT  217 (221)
T ss_dssp             E-ECCCCCSSSSTHHHHHHHHHHHHHTTCC----------------CCCCHHHHHHHHHHHHHHHHT
T ss_pred             e-ccCCCCCCCCChHHHHHHHHHHHhCCCC----------------CccCHHHHHHHHHHHHHHHHH
Confidence            4 7899999999999999999999988321                256788999999999998865

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-37  Score=249.31  Aligned_cols=196  Identities=19%  Similarity=0.236  Sum_probs=157.6

Q ss_pred             CCCCCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhcc---CCCeeeeChhhhHHHhcCCChHHHHHhhc
Q 027072            2 GKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCPDATYLKEFIE   78 (228)
Q Consensus         2 ~~~~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~---~~~i~~~~p~~~~~~~~~~~~~~~~~~~~   78 (228)
                      +..++++.+++..++.|+.+|+++|.+++||||.||++|+++|.++..   ...+++++|....... ..+.+.+.+|++
T Consensus        18 ~~~~~~~~~~~~~~~~it~~Dl~~L~~~~wLnd~iI~~y~~~l~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~   96 (225)
T d2iy1a1          18 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLK-TAGYQAVKRWTK   96 (225)
T ss_dssp             SSSCTTCEEEEETTEEEEHHHHHTTSTTCCCBHHHHHHHHHHHHHHTTSTTSCCEEECCTTHHHHHH-HSCGGGTGGGGT
T ss_pred             cCCCcCceeeecCCceeeHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhhccCceEEeccHHHhhhc-ccCHHHHHHHHh
Confidence            456678899999999999999999999999999999999999997665   3577888776433232 234677889999


Q ss_pred             cCCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhh----cCcCCCCCCe
Q 027072           79 PLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFM----GDSTSASNGK  154 (228)
Q Consensus        79 ~~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l----~~~~~~~~~~  154 (228)
                      +.+++++++||+|||.         ++||+|++|+++.+++++||||++.+...++.+...+....    .......+|+
T Consensus        97 ~~~~~~~~~I~iPin~---------~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  167 (225)
T d2iy1a1          97 KVDVFSVDILLVPIHL---------GVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQ  167 (225)
T ss_dssp             TCCGGGSSEEEEEEEC---------SSCEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCCCTTCE
T ss_pred             ccccccCCEEEEEEeC---------CCCEEEEEEEeccceEEEEecCCCCchHHHHHHHHHHHHHHHHhccCccCcccce
Confidence            9999999999999997         79999999999999999999999988776666665554433    2222345565


Q ss_pred             ee--cCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHH
Q 027072          155 YL--DCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKG  223 (228)
Q Consensus       155 ~v--~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~  223 (228)
                      .+  ....+|||+||+|||+|||+||++++++..                ..++++.+..+|++|...|.+
T Consensus       168 ~~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~----------------~~~~q~~~~~~R~~~~~~l~~  222 (225)
T d2iy1a1         168 LFSKKSQEIPQQMNGSDAGMFACKYADCITKDRP----------------INFTQQHMPYFRKRMVWEILH  222 (225)
T ss_dssp             EEECCTTTSCCCCSSSTHHHHHHHHHHHHHTTCC----------------CCCCGGGHHHHHHHHHHHHHT
T ss_pred             ecccccccCCCCCCCCChHHHHHHHHHHHhCCCC----------------CCcCHHHHHHHHHHHHHHHHh
Confidence            53  357899999999999999999999988421                246788899999999877754

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-37  Score=249.93  Aligned_cols=194  Identities=20%  Similarity=0.252  Sum_probs=152.8

Q ss_pred             CCCCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhcc---CCCeeeeChhhhHHHhcCCChHHHHHhhcc
Q 027072            3 KSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCPDATYLKEFIEP   79 (228)
Q Consensus         3 ~~~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~---~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~   79 (228)
                      ..+.++.+++..++.|+.+|+++|.+++||||+||+||+++|.+...   ...+++++|.....+... +++.+.+|++.
T Consensus        19 ~~~~~~~~~~~~~~~i~~~Dl~~L~~~~WLnD~iI~~y~~~l~~~~~~~~~~~~~~~~~~f~~~l~~~-~~~~~~~~~~~   97 (226)
T d1th0a_          19 HGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSG-GYQAVKRWTKG   97 (226)
T ss_dssp             SSCTTCEEEEETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHHH-TGGGTGGGGTT
T ss_pred             CCCccceeeecCCceeEHHHHHhcCCCcccccHHHHHHHHHHHHhhhhccCCceEEecHHHHHHHhhc-cHHHHHHHHhc
Confidence            34567788999999999999999999999999999999999987654   356788877643333322 36678889998


Q ss_pred             CCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhc----CcCCCCCCee
Q 027072           80 LKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMG----DSTSASNGKY  155 (228)
Q Consensus        80 ~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~----~~~~~~~~~~  155 (228)
                      .+++++++||+|||.         ++||+|+||+.+.+++++|||+++.+....+.+...+...+.    .......++.
T Consensus        98 ~~l~~~~~i~iPin~---------~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  168 (226)
T d1th0a_          98 VNLFEQEIILVPIHR---------KVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTH  168 (226)
T ss_dssp             CCGGGSSEEEEEEEE---------TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCCGGGCEE
T ss_pred             cCcccCCEEEEeEEc---------CCceEEEEEEeccceEEEeccccCCChHHHHHHHHHHHHHHHHhhCCCcCccccee
Confidence            999999999999997         699999999999999999999999887766666555544332    1111123333


Q ss_pred             --ecCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHH
Q 027072          156 --LDCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIK  222 (228)
Q Consensus       156 --v~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~  222 (228)
                        +.+..+|||+||+|||+|||+||++++++..                ..+++..+..+|++|...|.
T Consensus       169 ~~~~~~~~pqQ~N~~DCGvfvl~~~~~~~~~~~----------------~~~tq~di~~~R~~i~~el~  221 (226)
T d1th0a_         169 HSMKPHEIPQQLNGSDCGMFTCKYADYISRDKP----------------ITFTQHQMPLFRKKMVWEIL  221 (226)
T ss_dssp             EECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCC----------------CCCCGGGHHHHHHHHHHHHH
T ss_pred             eeeccCCCCCCCCCCCHHHHHHHHHHHHhCCCC----------------CCcCHHHHHHHHHHHHHHHH
Confidence              3457899999999999999999999988421                24678889999999987664

>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Human adenovirus 2 proteinase, adenain
species: Mastadenovirus H2 [TaxId: 10515]

Probab=96.93  E-value=0.0029  Score=47.24  Aligned_cols=95  Identities=16%  Similarity=0.270  Sum_probs=60.6

Q ss_pred             EEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHH-----HHHHH-hhcCcCCCCCCeeecCCCC
Q 027072           88 VIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLF-----SAVVG-FMGDSTSASNGKYLDCVDS  161 (228)
Q Consensus        88 I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~-----~~l~~-~l~~~~~~~~~~~v~~~~~  161 (228)
                      ---.||..   ....+|.||.-+..++..++++.||+++=++.+ ++++.     ..|++ .+... ..+=.+.+.-...
T Consensus        38 ~~AIVNT~---~retGG~HWlA~Aw~P~s~t~Y~FDPfGfsd~~-L~q~Y~FeY~~llkRSAL~~s-pdRCvtlvkstq~  112 (203)
T d1nlna_          38 ACAIVNTA---GRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQR-LKQVYQFEYESLLRRSAIASS-PDRCITLEKSTQS  112 (203)
T ss_dssp             EEEEEESS---CTTTCCCCEEEEEEETTTTEEEEECTTCCCHHH-HHHHHCCCCHHHHHHHHHHHC-TTSEEEEEEECEE
T ss_pred             ceeEEecC---CcccCceeeEEeEecCCcCeEEEECCCCCCHHH-HHHHhhhhHHHHHHHHhhcCC-CCceEEEEeccce
Confidence            34446653   223379999999999999999999999865433 22221     11221 22100 0122333333444


Q ss_pred             CCCCCCCccHHHHHHHHHHHHHHhhc
Q 027072          162 PQQTNGYDCGVYVIAIARAICCWYES  187 (228)
Q Consensus       162 pqQ~n~~DCGvfvl~~~~~l~~~~~~  187 (228)
                      -|=+++-.||+|-|+|+.++.++..+
T Consensus       113 VQcp~SaaCGLFC~lFL~aF~~~p~~  138 (203)
T d1nlna_         113 VQGPNSAACGLFCCMFLHAFANWPQT  138 (203)
T ss_dssp             CSCTTCCCHHHHHHHHHHHHHHCTTS
T ss_pred             ecCCCchhHHHHHHHHHHHHHhCCCC
Confidence            56668999999999999999998755