Citrus Sinensis ID: 027085

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MGNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEcccccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEccccccccccEEEEEcccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccEEEcccccccEEEEEEEEccccccccccEEEEEEEcccccccccccEEEEccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccEcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccHcccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgngcfyhvqepvshvvarpspndilEWHYvlegsngtpfaggyyygkikfppeypykppgilmitpngrfmtQKKLCLSmsdfhpeswnpmwsVSSILTGLLSFmmdtspttgsvnttTEEKQRLAKASLafncknpafrKLFPEYVEKYNEQQLAEQRvseqlspespneensrpkvekvgsgedmktidtpkearknrkqsfPTWMLLLLVSIFGIVMALPLLQL
Flexible Loop (DISEMBL)
MGNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVseqlspespneensrpkvekvgsgedmktidtpkearknrkqsfpTWMLLLLVSIFGIVMALPLLQL
Low Complexity Region (SEG)
MGNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDtspttgsvntttEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL
Disordered region (IsUnstruct)
****CFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMM*********************ASLAFNCKNPAFRKLFPEYVEKY*****************************************************FPTWMLLLLVSIFGIVMALPLL**
Disordered Region (DISOPRED)
****CFY*VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV***********************************************************WMLLLLVSIFGIVMALPLLQL
Disordered Region (DISEMBL)
MGNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQL***************************SGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL
Disordered Region (DISPRO)
**NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRV*****************************************QSFPTWMLLLLVSIFGIVMALPLLQL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9SHI7	237	Ubiquitin-conjugating enz	yes	no	0.964	0.928	0.768	5e-98
Q9FK29	243	Probable ubiquitin-conjug	no	no	0.960	0.901	0.72	1e-91
Q8N2K1	259	Ubiquitin-conjugating enz	yes	no	0.679	0.598	0.548	2e-48
Q6P073	259	Ubiquitin-conjugating enz	yes	no	0.679	0.598	0.541	8e-48
Q2TA03	259	Ubiquitin-conjugating enz	yes	no	0.679	0.598	0.541	8e-48
P33296	250	Ubiquitin-conjugating enz	yes	no	0.855	0.78	0.435	1e-43
Q6FQK7	246	Ubiquitin-conjugating enz	yes	no	0.942	0.873	0.433	2e-43
Q6BYG4	242	Ubiquitin-conjugating enz	yes	no	0.899	0.847	0.418	6e-42
Q54LP7	241	Ubiquitin-conjugating enz	yes	no	0.605	0.572	0.528	3e-41
Q6CMG6	251	Ubiquitin-conjugating enz	yes	no	0.929	0.844	0.397	1e-40

>sp|Q9SHI7|UBC34_ARATH Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1

 Score =  357 bits (915), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 169/220 (76%), Positives = 188/220 (85%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSHVVARPSPNDILEWHYVLEGS GTPFAGG+YYGKIKFPPEYPYKPPGI M TPN
Sbjct: 18  CKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTT  EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDM 188
           +SLAFNCK PAFRKLFPEYVEKYN+QQLAEQ  ++  +PESP + +++ + EK       
Sbjct: 138 SSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKG 197

Query: 189 KTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
            +    KE +KN KQ  P W++LLLVS+FG+VMALPLLQL
Sbjct: 198 DSEGGLKERKKNNKQGLPAWIILLLVSVFGVVMALPLLQL 237

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q9FK29|UBC33_ARATH Probable ubiquitin-conjugating enzyme E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1

 Score =  335 bits (860), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 162/225 (72%), Positives = 189/225 (84%), Gaps = 6/225 (2%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           +EPVSHVVARPSPNDILEWHYVLEGS GTPFAGG+YYGKIKFPPEYPYKPPGI M TPNG
Sbjct: 19  KEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPNG 78

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
           RF+TQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNT+  EKQRLAK+
Sbjct: 79  RFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKS 138

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPES-----PNEENSRPKVEK-VG 183
           SLAFNCK+  FRKLFPEYVEKY++QQ+AE+  + Q +  S     P ++N++ + EK VG
Sbjct: 139 SLAFNCKSVTFRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVG 198

Query: 184 SGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
             ++       KE R+N+K++ P W++LLLVSI G+VMALPLLQL
Sbjct: 199 LKKESIQEVGLKERRRNKKEALPGWIVLLLVSIVGVVMALPLLQL 243

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8N2K1|UB2J2_HUMAN Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/155 (54%), Positives = 117/155 (75%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct: 26  KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
           RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  
Sbjct: 86  RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQ 145

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
           SLAFN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct: 146 SLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 180

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6P073|UB2J2_MOUSE Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1

 Score =  190 bits (482), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 116/155 (74%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct: 26  KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
           RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  
Sbjct: 86  RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQ 145

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
           SL FN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct: 146 SLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNR 180

In case of infection by the murid herpesvirus 4, its association with the viral E3 ligase K3 mediates ubiquitination of host surface class I (MHC-I) H-2D(b)/H2-D1 and H-2K(b)/H2-K1 molecules before they exit the endoplasmic reticulum, leading to their degradation by the ERAD system, thus blocking the immune detection of virus-infected cells. The complex formed with the murid herpesvirus 4 protein K3 mediates ubiquitination of lysine, as well as serine and threonine residues present in the cytoplasmic tail of surface class I molecules and promotes ubiquitination of hydroxylated serine or threonine residues via ester bonds instead of the classical isopeptide linkage.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q2TA03|UB2J2_BOVIN Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1

 Score =  190 bits (482), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 116/155 (74%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct: 26  KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
           RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  
Sbjct: 86  RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQ 145

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
           SL FN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct: 146 SLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 180

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD).

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P33296|UBC6_YEAST Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 133/200 (66%), Gaps = 5/200 (2%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           V+ P  +++ARP+ ++ILEWHY++ G   TP+ GG Y+G + FP +YPYKPP I MITPN
Sbjct: 18  VENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRF    +LCLSMSD+HP++WNP WSVS+IL GLLSFM     TTGS+ T+  +K+ LA+
Sbjct: 78  GRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKTLAR 137

Query: 129 ASLAFNC-KNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEEN---SRPKVEKVGS 184
            S+++N  +N  F+ +FPE V++ N + L ++++ E  +  + +E     ++   EKV S
Sbjct: 138 NSISYNTFQNVRFKLIFPEVVQE-NVETLEKRKLDEGDAANTGDETEDPFTKAAKEKVIS 196

Query: 185 GEDMKTIDTPKEARKNRKQS 204
            E++   +    A +  +QS
Sbjct: 197 LEEILDPEDRIRAEQALRQS 216

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6FQK7|UBC6_CANGA Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UBC6 PE=3 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 139/226 (61%), Gaps = 11/226 (4%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           V+ P   ++ARP+  +ILEWHYV+ G   TP+ GG Y+G + FP +YPYKPP I MITPN
Sbjct: 18  VENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRF    +LCLSMSD+HP++WNP WSV++IL GLLSFM     TTGS+ TT +EK+ LAK
Sbjct: 78  GRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMTGDESTTGSITTTQQEKKILAK 137

Query: 129 ASLAFNCKNPA-FRKLFPEYVEK----YNEQQLAEQRVSEQLSPESPNEENSRPK---VE 180
            S+ +N  N   F+ +FPE VEK       ++  E+ +S     E P  + +R K   V+
Sbjct: 138 KSMYYNTFNSTRFKLVFPEIVEKNITELQRRKQEEKDMSMFEKKEDPLVKAAREKAIEVK 197

Query: 181 KVGSGED-MKTIDTPKEARK--NRKQSFPTWMLLLLVSIFGIVMAL 223
            + + ED ++     KE  K  N K +  + M  + V++F  ++ L
Sbjct: 198 DIVNPEDRIRAEQALKELEKQHNDKPNGSSSMFYIGVALFLFLVGL 243

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6BYG4|UBC6_DEBHA Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=UBC6 PE=3 SV=2

 Score =  170 bits (431), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 134/215 (62%), Gaps = 10/215 (4%)

Query: 12  PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRF 71
           P  +V A+P+  +ILEWHYV+ G   TPF  G Y+G ++FP EYP+KPP I MITPNGRF
Sbjct: 21  PPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITPNGRF 80

Query: 72  MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASL 131
               +LCLSMSD+HP++WNP WSV++ILTGLLSFM     TTGS+ T+   K+RLA++S 
Sbjct: 81  ACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMTGDESTTGSITTSDNVKKRLARSSK 140

Query: 132 AF-NCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDMKT 190
            + N +N  F K FP+ V + N+  +A +   EQ +  + + +  +P        E++ +
Sbjct: 141 EWNNAENQRFTKQFPDLVAQ-NKVDVAARNAREQAAATTDSTDPEKP----FDVRENIDS 195

Query: 191 IDTPKEAR---KNRKQSFPTWMLLLLVSIFGIVMA 222
           +D    AR   +    S P++ +    ++ G+V+A
Sbjct: 196 LDPEDRARLLVEQDDHSTPSFGVQRF-TLVGVVVA 229

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q54LP7|UB2J2_DICDI Ubiquitin-conjugating enzyme E2 J2 OS=Dictyostelium discoideum GN=ube2j2 PE=1 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 101/138 (73%)

Query: 17  VARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKK 76
           +A+PS ++ILEWHYV+ G   TP+ GGYY+G+I FP EYPYKPP ILM TP+GRF+   +
Sbjct: 28  IAKPSISNILEWHYVIYGPPDTPYHGGYYHGQIIFPVEYPYKPPSILMTTPSGRFVCNSR 87

Query: 77  LCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCK 136
           +C SMSDFHP++W+P WS  +I+ GL+SFM +     GS+  + E +++LA  S+AFN K
Sbjct: 88  ICTSMSDFHPDTWSPFWSNCTIILGLISFMTEDENGFGSIVKSKETRKQLASQSMAFNLK 147

Query: 137 NPAFRKLFPEYVEKYNEQ 154
           NP F KLFPE +  Y ++
Sbjct: 148 NPVFVKLFPELISDYKKK 165

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6CMG6|UBC6_KLULA Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=UBC6 PE=3 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 130/234 (55%), Gaps = 22/234 (9%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           V  P   ++A P  ++ILEWHYV+ G   TP+  G Y+G + FP +YP+ PP I MITPN
Sbjct: 18  VNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRF    +LCLSMSD+HPE+WNP WSV +IL GLLSFM     TTGSV+T+ ++K+ LAK
Sbjct: 78  GRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMTGDEQTTGSVSTSDKDKRTLAK 137

Query: 129 ASLAFNC-KNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPK--------V 179
            S  FN   N  F+ +FP+  E  N + +  +   E  S  +  EEN   K        +
Sbjct: 138 KSKHFNTYSNFKFKNMFPDLRES-NIKDIEREAALEAESKGAQQEENKAQKLATEKATSL 196

Query: 180 EKVGSGEDMKTIDTPKEARKNRKQSFPT----------WMLLLLVSIF--GIVM 221
           + +   ED   I    +A K++K                 L+L ++IF  G++M
Sbjct: 197 DDISDPEDRVRIQELIKAEKDKKDQDKNPGENSNIKSLLCLILAIAIFFVGLIM 250

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
224137760	235	predicted protein [Populus trichocarpa]	0.947	0.919	0.788	1e-98
356520176	238	PREDICTED: ubiquitin-conjugating enzyme	0.960	0.920	0.788	1e-98
359806739	238	uncharacterized protein LOC100789952 [Gl	0.960	0.920	0.792	2e-98
255586333	237	ubiquitin-conjugating enzyme E2 j2, puta	0.964	0.928	0.781	2e-98
297742924	305	unnamed protein product [Vitis vinifera]	0.951	0.711	0.828	3e-98
410994608	239	ubiquitin conjugating enzyme J2 [Camelli	0.964	0.920	0.774	6e-98
225441969	237	PREDICTED: ubiquitin-conjugating enzyme	0.956	0.919	0.824	2e-97
297850126	237	ubiquitin-conjugating enzyme 32 [Arabido	0.964	0.928	0.763	2e-96
15220062	237	ubiquitin-conjugating enzyme E2 34 [Arab	0.964	0.928	0.768	3e-96
357514351	241	Ubiquitin carrier protein E2 [Medicago t	0.964	0.912	0.758	4e-96

>gi|224137760|ref|XP_002326433.1| predicted protein [Populus trichocarpa] gi|222833755|gb|EEE72232.1| predicted protein [Populus trichocarpa]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 175/222 (78%), Positives = 194/222 (87%), Gaps = 6/222 (2%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSHVVARPSP+DILEWHYVLEGS GTPFAGGYYYGKIKFPPEYPYKPPGI+MITPN
Sbjct: 18  CKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGIIMITPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFM D SPTTGSVNTT  +K+RLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMTDNSPTTGSVNTTAADKRRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVG--SGE 186
            SLAFNCKN AFRKLFPEYVEK++++  +EQ VS Q    +P E+ SR K+EK G  S E
Sbjct: 138 DSLAFNCKNAAFRKLFPEYVEKHDQELHSEQLVSSQ----APQEDKSRAKLEKHGDSSVE 193

Query: 187 DMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
           D K +D PK+ R+NRKQ FPTWM+LLLVSIFG+VMALPLLQL
Sbjct: 194 DAKRVDAPKDERRNRKQPFPTWMMLLLVSIFGVVMALPLLQL 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520176|ref|XP_003528740.1| PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Glycine max]

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 175/222 (78%), Positives = 196/222 (88%), Gaps = 3/222 (1%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSHVVARPSP+DILEWHYVLEGS GTPFAGGYYYGKIKFPPEYPYKPPGI M TPN
Sbjct: 18  CKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTTT EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKV--GSGE 186
           +SL+FNCKN  FRK+FPEYVEKYN+QQL+EQ   E++S ++  +++SRP +EK    +GE
Sbjct: 138 SSLSFNCKNATFRKMFPEYVEKYNQQQLSEQAAPERVSSDTSPDKSSRPVLEKKLESNGE 197

Query: 187 DMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
           DM+ +D  KE RKNRK  FPTWM+LLL SIFG+VMALPLLQL
Sbjct: 198 DMRRVDGLKEVRKNRK-PFPTWMMLLLFSIFGVVMALPLLQL 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806739|ref|NP_001241297.1| uncharacterized protein LOC100789952 [Glycine max] gi|255647570|gb|ACU24248.1| unknown [Glycine max]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/222 (79%), Positives = 196/222 (88%), Gaps = 3/222 (1%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSHVVARPSP+DILEWHYVLEGS GTPFAGGYYYGKIKFPPEYPYKPPGI M TPN
Sbjct: 18  CKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTTT EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKV--GSGE 186
           +SL+FNCKN  FRK+FPEYVEKYN+QQL+EQ   E++S ++  +++SRP +EK    +GE
Sbjct: 138 SSLSFNCKNATFRKIFPEYVEKYNQQQLSEQAAPERVSLDTSPDKSSRPVLEKKLESNGE 197

Query: 187 DMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
           DMK +D  KE RKNRK  FPTWM+LLL SIFG+VMALPLLQL
Sbjct: 198 DMKRVDGLKEVRKNRK-PFPTWMMLLLFSIFGVVMALPLLQL 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586333|ref|XP_002533817.1| ubiquitin-conjugating enzyme E2 j2, putative [Ricinus communis] gi|223526254|gb|EEF28570.1| ubiquitin-conjugating enzyme E2 j2, putative [Ricinus communis]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 172/220 (78%), Positives = 191/220 (86%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPV HVVARPS  DILEWHYVLEGS GTPFAGGYYYGKIKFPP+YPY PPGI MITPN
Sbjct: 18  CKEPVPHVVARPSSRDILEWHYVLEGSEGTPFAGGYYYGKIKFPPDYPYNPPGITMITPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT  EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDM 188
           ASLAFNCKNP F+KLFPEYVEKYN+QQ +EQ +S+Q+S E+  E+ SRP +EK+ +    
Sbjct: 138 ASLAFNCKNPTFKKLFPEYVEKYNQQQQSEQIMSDQVSREASREDRSRPTLEKLDNSSGD 197

Query: 189 KTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
              DT K+AR+N KQ+FPTW++LLLVS FGIVMALPLLQL
Sbjct: 198 VKRDTLKDARRNGKQTFPTWLMLLLVSAFGIVMALPLLQL 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742924|emb|CBI35791.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 183/221 (82%), Positives = 203/221 (91%), Gaps = 4/221 (1%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           +EPVSHVVARPSPNDILEWHYVLEGS GTPFAGGYYYGKIKFPPEYPYKPPGI M TPNG
Sbjct: 87  KEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNG 146

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
           RFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSV TTT+EKQRLAKA
Sbjct: 147 RFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVTTTTKEKQRLAKA 206

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSG--ED 187
           SL+FNCKN  FRK+FPEYVEKYN QQL+EQ +SEQ SP +P++E+SR  ++KVG+   ED
Sbjct: 207 SLSFNCKNATFRKMFPEYVEKYN-QQLSEQSLSEQGSP-APSQEDSRRLLDKVGNSMRED 264

Query: 188 MKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
           +K ++TPK+ RKNR+QSFPTWML+LLVSIFGIVMALPLLQL
Sbjct: 265 LKRVETPKDTRKNRRQSFPTWMLVLLVSIFGIVMALPLLQL 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410994608|gb|AFV96170.1| ubiquitin conjugating enzyme J2 [Camellia oleifera]

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 172/222 (77%), Positives = 191/222 (86%), Gaps = 2/222 (0%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSHV ARPSP+DILEWHYVLEGS GTPFAGGYYYGKIKFPPEYP+KPPGI M TPN
Sbjct: 18  CKEPVSHVTARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPFKPPGISMTTPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSV TT  EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVTTTVAEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSG--E 186
           +SLAFNCKNP FRK+FPEYVEKY +QQL+EQ V EQ+S     +E  RP ++K G+   E
Sbjct: 138 SSLAFNCKNPTFRKMFPEYVEKYEQQQLSEQPVPEQVSTTPTQQEGHRPLLDKTGNSTQE 197

Query: 187 DMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
           D+  ++  ++ R  RKQSFPTWMLLLLVSIFG+VMALPLLQL
Sbjct: 198 DLNKVEALRDPRNRRKQSFPTWMLLLLVSIFGVVMALPLLQL 239

Source: Camellia oleifera

Species: Camellia oleifera

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441969|ref|XP_002264017.1| PREDICTED: ubiquitin-conjugating enzyme E2 34-like isoform 1 [Vitis vinifera]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 183/222 (82%), Positives = 203/222 (91%), Gaps = 4/222 (1%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSHVVARPSPNDILEWHYVLEGS GTPFAGGYYYGKIKFPPEYPYKPPGI M TPN
Sbjct: 18  CKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSV TTT+EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVTTTTKEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSG--E 186
           ASL+FNCKN  FRK+FPEYVEKYN QQL+EQ +SEQ SP +P++E+SR  ++KVG+   E
Sbjct: 138 ASLSFNCKNATFRKMFPEYVEKYN-QQLSEQSLSEQGSP-APSQEDSRRLLDKVGNSMRE 195

Query: 187 DMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
           D+K ++TPK+ RKNR+QSFPTWML+LLVSIFGIVMALPLLQL
Sbjct: 196 DLKRVETPKDTRKNRRQSFPTWMLVLLVSIFGIVMALPLLQL 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850126|ref|XP_002892944.1| ubiquitin-conjugating enzyme 32 [Arabidopsis lyrata subsp. lyrata] gi|297338786|gb|EFH69203.1| ubiquitin-conjugating enzyme 32 [Arabidopsis lyrata subsp. lyrata]

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/220 (76%), Positives = 188/220 (85%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSHVVARPSPNDILEWHYVLEGS GTPFAGG+YYGKIKFPPEYPYKPPGI M TPN
Sbjct: 18  CKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTT  EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDM 188
           +SLAFNCK PAFRKLFPEYVEKYN+QQLAEQ  ++  + ESP + +++ + EK       
Sbjct: 138 SSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQAATQVTTSESPQKSDTKVESEKTIDPTKE 197

Query: 189 KTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
            +    KE +KN+KQ  P W++LLLVS+FG+VMALPLLQL
Sbjct: 198 DSEGGLKERKKNKKQGLPAWIILLLVSVFGVVMALPLLQL 237

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220062|ref|NP_173172.1| ubiquitin-conjugating enzyme E2 34 [Arabidopsis thaliana] gi|145323930|ref|NP_001077554.1| ubiquitin-conjugating enzyme E2 34 [Arabidopsis thaliana] gi|75313457|sp|Q9SHI7.1|UBC34_ARATH RecName: Full=Ubiquitin-conjugating enzyme E2 34; AltName: Full=Ubiquitin carrier protein 34 gi|5734741|gb|AAD50006.1|AC007651_1 Similar to Ubiquitin Conjugating Enzyme [Arabidopsis thaliana] gi|21536906|gb|AAM61238.1| putative ubiquitin-conjugating enzyme [Arabidopsis thaliana] gi|27765034|gb|AAO23638.1| At1g17280 [Arabidopsis thaliana] gi|110742918|dbj|BAE99355.1| putative ubiquitin-conjugating enzyme [Arabidopsis thaliana] gi|332191446|gb|AEE29567.1| ubiquitin-conjugating enzyme E2 34 [Arabidopsis thaliana] gi|332191447|gb|AEE29568.1| ubiquitin-conjugating enzyme E2 34 [Arabidopsis thaliana]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/220 (76%), Positives = 188/220 (85%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSHVVARPSPNDILEWHYVLEGS GTPFAGG+YYGKIKFPPEYPYKPPGI M TPN
Sbjct: 18  CKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTT  EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDM 188
           +SLAFNCK PAFRKLFPEYVEKYN+QQLAEQ  ++  +PESP + +++ + EK       
Sbjct: 138 SSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKG 197

Query: 189 KTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
            +    KE +KN KQ  P W++LLLVS+FG+VMALPLLQL
Sbjct: 198 DSEGGLKERKKNNKQGLPAWIILLLVSVFGVVMALPLLQL 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514351|ref|XP_003627464.1| Ubiquitin carrier protein E2 [Medicago truncatula] gi|217075280|gb|ACJ86000.1| unknown [Medicago truncatula] gi|355521486|gb|AET01940.1| Ubiquitin carrier protein E2 [Medicago truncatula] gi|388490584|gb|AFK33358.1| unknown [Medicago truncatula]

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 170/224 (75%), Positives = 194/224 (86%), Gaps = 4/224 (1%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +EPVSH+VARPSP+DILEWHYVLEGS GTPF+GGYYYGKIKFP EYPYKPPGI M TPN
Sbjct: 18  CKEPVSHIVARPSPSDILEWHYVLEGSEGTPFSGGYYYGKIKFPQEYPYKPPGISMTTPN 77

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
           GRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTT EKQRLAK
Sbjct: 78  GRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTVEKQRLAK 137

Query: 129 ASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ-LSPESPNEENSRPKVEK---VGS 184
           +S++FNCKN  FRK+FPEYVEKYN+QQL+EQ  SEQ  S E+  +++ R  +E      +
Sbjct: 138 SSMSFNCKNATFRKMFPEYVEKYNKQQLSEQVTSEQPASSETGQDKSPRSVLENNNLEST 197

Query: 185 GEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
           GEDMK ++  K+ R+N+KQ FPTWM+LLL SIFG+VMALPLLQL
Sbjct: 198 GEDMKRVEGLKDVRRNKKQGFPTWMMLLLFSIFGVVMALPLLQL 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2020392	237	UBC34 "AT1G17280" [Arabidopsis	0.960	0.924	0.721	8e-85
TAIR|locus:2177502	243	UBC33 "AT5G50430" [Arabidopsis	0.956	0.897	0.681	7.6e-80
UNIPROTKB|E1BZ66	259	UBE2J2 "Uncharacterized protei	0.701	0.617	0.503	5.7e-43
UNIPROTKB|B1AMF0	196	UBE2J2 "Ubiquitin-conjugating	0.679	0.790	0.516	1.2e-42
UNIPROTKB|Q8N2K1	259	UBE2J2 "Ubiquitin-conjugating	0.679	0.598	0.516	1.2e-42
UNIPROTKB|J9NYP5	259	UBE2J2 "Uncharacterized protei	0.679	0.598	0.509	1.9e-42
UNIPROTKB|Q2TA03	259	UBE2J2 "Ubiquitin-conjugating	0.679	0.598	0.509	2.5e-42
UNIPROTKB|F1RJF5	259	UBE2J2 "Uncharacterized protei	0.679	0.598	0.509	2.5e-42
MGI|MGI:2153608	259	Ube2j2 "ubiquitin-conjugating	0.679	0.598	0.509	2.5e-42
RGD|1359523	259	Ube2j2 "ubiquitin-conjugating	0.679	0.598	0.509	2.5e-42

TAIR|locus:2020392 UBC34 "AT1G17280" [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 158/219 (72%), Positives = 177/219 (80%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             +EPVSHVVARPSPNDILEWHYVLEGS GTPFAGG+YYGKIKFPPEYPYKPPGI M TPNG
Sbjct:    19 KEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPNG 78

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD             EKQRLAK+
Sbjct:    79 RFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRLAKS 138

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKVGSGEDMK 189
             SLAFNCK PAFRKLFPEYVEKYN+QQLAEQ  ++  +PESP + +++ + EK        
Sbjct:   139 SLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGD 198

Query:   190 TIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
             +    KE +KN KQ  P W++LLLVS+FG+VMALPLLQL
Sbjct:   199 SEGGLKERKKNNKQGLPAWIILLLVSVFGVVMALPLLQL 237

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

TAIR|locus:2177502 UBC33 "AT5G50430" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 154/226 (68%), Positives = 181/226 (80%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             +EPVSHVVARPSPNDILEWHYVLEGS GTPFAGG+YYGKIKFPPEYPYKPPGI M TPNG
Sbjct:    19 KEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPNG 78

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF+TQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD             EKQRLAK+
Sbjct:    79 RFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKS 138

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPES-----PNEENSRPKVEK-VG 183
             SLAFNCK+  FRKLFPEYVEKY++QQ+AE+  + Q +  S     P ++N++ + EK VG
Sbjct:   139 SLAFNCKSVTFRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVG 198

Query:   184 -SGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
                E ++ +   KE R+N+K++ P W++LLLVSI G+VMALPLLQL
Sbjct:   199 LKKESIQEVGL-KERRRNKKEALPGWIVLLLVSIVGVVMALPLLQL 243

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|E1BZ66 UBE2J2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 81/161 (50%), Positives = 113/161 (70%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct:    26 KDPVPYICAEPLPSNILEWHYVVRGPETTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct:    86 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSEFAKRQLAAQ 145

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESP 170
             SLAFN K+  F +LFPE VE+  ++Q A++ ++ +  P  P
Sbjct:   146 SLAFNLKDKVFCELFPEVVEEIKQKQKAQEELNSR-PPSLP 185

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|B1AMF0 UBE2J2 "Ubiquitin-conjugating enzyme E2 J2" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 80/155 (51%), Positives = 110/155 (70%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct:    26 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct:    86 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQ 145

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
             SLAFN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct:   146 SLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 180

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q8N2K1 UBE2J2 "Ubiquitin-conjugating enzyme E2 J2" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 80/155 (51%), Positives = 110/155 (70%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct:    26 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct:    86 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQ 145

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
             SLAFN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct:   146 SLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 180

GO:0005524 "ATP binding" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|J9NYP5 UBE2J2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 79/155 (50%), Positives = 109/155 (70%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct:    26 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLVFPREFPFKPPSIYMITPNG 85

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct:    86 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQ 145

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
             SL FN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct:   146 SLTFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 180

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q2TA03 UBE2J2 "Ubiquitin-conjugating enzyme E2 J2" [Bos taurus (taxid:9913)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 79/155 (50%), Positives = 109/155 (70%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct:    26 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct:    86 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQ 145

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
             SL FN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct:   146 SLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 180

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RJF5 UBE2J2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 79/155 (50%), Positives = 109/155 (70%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct:    26 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct:    86 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQ 145

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
             SL FN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct:   146 SLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 180

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

MGI|MGI:2153608 Ube2j2 "ubiquitin-conjugating enzyme E2J 2" [Mus musculus (taxid:10090)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 79/155 (50%), Positives = 109/155 (70%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct:    26 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct:    86 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQ 145

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
             SL FN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct:   146 SLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNR 180

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

RGD|1359523 Ube2j2 "ubiquitin-conjugating enzyme E2, J2" [Rattus norvegicus (taxid:10116)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 79/155 (50%), Positives = 109/155 (70%)

Query:    10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
             ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct:    26 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 85

Query:    70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
             RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct:    86 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQ 145

Query:   130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
             SL FN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct:   146 SLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNR 180

GO:0005783 "endoplasmic reticulum" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6CMG6	UBC6_KLULA	6, ., 3, ., 2, ., 1, 9	0.3974	0.9298	0.8446	yes	no
Q6BYG4	UBC6_DEBHA	6, ., 3, ., 2, ., 1, 9	0.4186	0.8991	0.8471	yes	no
Q6FQK7	UBC6_CANGA	6, ., 3, ., 2, ., 1, 9	0.4336	0.9429	0.8739	yes	no
Q9FK29	UBC33_ARATH	6, ., 3, ., 2, ., 1, 9	0.72	0.9605	0.9012	no	no
O42646	UBC6_SCHPO	6, ., 3, ., 2, ., 1, 9	0.5068	0.6359	0.6387	yes	no
Q74Z34	UBC6_ASHGO	6, ., 3, ., 2, ., 1, 9	0.3636	0.9429	0.8884	yes	no
Q9SHI7	UBC34_ARATH	6, ., 3, ., 2, ., 1, 9	0.7681	0.9649	0.9282	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.979
3rd Layer	6.3.2	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	1e-34
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	3e-27
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	2e-26
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	2e-24
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	7e-11
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	8e-06

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  119 bits (302), Expect = 1e-34
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--P 67
           ++P S + A P   ++LEWH  + G   TP+ GG +   I+FP +YP+KPP +  +T   
Sbjct: 13  KDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIY 72

Query: 68  NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLA 127
           +       K+CLS+   H   W+P +++ ++L  L S + +  P          E  +L 
Sbjct: 73  HPNVDENGKICLSILKTH--GWSPAYTLRTVLLSLQSLLNE--PNPSD--PLNAEAAKLY 126

Query: 128 KASLAFNCKNPAFRKLFPEYV 148
           K           F+K   E+ 
Sbjct: 127 KE------NREEFKKKAREWT 141

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  101 bits (253), Expect = 3e-27
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 16/104 (15%)

Query: 11  EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 66
           +P   + A P  +++ EW   + G  GTP+ GG +   I+FP +YP+KPP +   T    
Sbjct: 12  DPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPKVKFTTKIYH 71

Query: 67  ----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
               P+G       +CL +     E+W+P  ++  +L  + S +
Sbjct: 72  PNVDPSGE------ICLDI--LKDENWSPALTIEQVLLSIQSLL 107

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 98.9 bits (247), Expect = 2e-26
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%)

Query: 9   VQEPVSHVVARPSP-NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP 67
            ++P     A P    ++LEW   + G  GTP+ GG +   I+FP +YP+KPP +  IT 
Sbjct: 10  RKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPPKVKFITK 69

Query: 68  --NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQR 125
             +    +  ++CL +     E W+P  ++ ++L  L S + + +P +       E    
Sbjct: 70  IYHPNVDSSGEICLDIL--KQEKWSPALTLETVLLSLQSLLSEPNPDSPLNADAAEL--- 124

Query: 126 LAKASLAFNCKNPAFRKLFPEYVEKYNE 153
                  +      F+K   E+ +KY E
Sbjct: 125 -------YKKNREEFKKKAREWTKKYAE 145

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 94.3 bits (235), Expect = 2e-24
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 18/144 (12%)

Query: 12  PVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGR 70
           P   + A P   +++  W   + G   TP+ GG +   ++FP +YP+KPP +   T    
Sbjct: 21  PPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80

Query: 71  FMTQK--KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP-TTGSVNTTTEEKQRLA 127
                   +CL +     + W+P++++ +IL  L S +   SP     +NT      R  
Sbjct: 81  PNVDPSGNVCLDILK---DRWSPVYTLETILLSLQSLL--LSPNPDSPLNTEAATLYRED 135

Query: 128 KASLAFNCKNPAFRKLFPEYVEKY 151
           K       +         E+V+KY
Sbjct: 136 KEEYEKKVR---------EWVKKY 150

Length = 153

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 58.2 bits (140), Expect = 7e-11
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 9/107 (8%)

Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
           +++P S+  A PS  ++  W   + G + +P+AGG ++  I FPP+YP+KPP +   T  
Sbjct: 14  LKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKI 73

Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
             PN    +   +CL   D   + W+P  +VS +L  + S + D +P
Sbjct: 74  YHPN--INSNGSICL---DILRDQWSPALTVSKVLLSISSLLTDPNP 115

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 17/97 (17%)

Query: 11  EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 66
           +P   + A P P +   +  ++EG +GTP+ GGYY  ++  P +YP +PP +  +T    
Sbjct: 17  DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYH 76

Query: 67  PN----GRFMTQKKLCLSMSDFHPESWNPMWSVSSIL 99
           PN    GR      +CL   D   + W+P   + ++L
Sbjct: 77  PNIDKLGR------ICL---DILKDKWSPALQIRTVL 104

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.98
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.94
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.94
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.89
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.76
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.62
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.46
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.1
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.36
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.02
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.97
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	96.84
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	96.08
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	93.4
smart00591	107	RWD domain in RING finger and WD repeat containing	92.34
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	91.99
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	90.59
KOG3357	167	consensus Uncharacterized conserved protein [Funct	81.12

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-48  Score=322.51  Aligned_cols=227  Identities=56%  Similarity=0.954  Sum_probs=197.4

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeEeccC
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSM   81 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~iCl~~   81 (228)
                      +++-..|+++|+++|.+.|.++|+++||.+|.||++|||+||.|+.+|.||++|||+||.|+++|||++|-.+-++||++
T Consensus        11 ~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktntRLCLSi   90 (244)
T KOG0894|consen   11 QKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTNTRLCLSI   90 (244)
T ss_pred             HHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecCceEEEec
Confidence            45566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhhhhhh
Q 027085           82 SDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRV  161 (228)
Q Consensus        82 L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~~~~~  161 (228)
                      .++|++.|+|.|++.+||.+|.++|.+..|..++++....+++.+|+.|+.|+++...|++++.|+|++|.+++.+++..
T Consensus        91 SDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN~kn~~F~~lFPE~Vee~nq~~~a~~~a  170 (244)
T KOG0894|consen   91 SDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFNLKNPKFCELFPEVVEEYNQEQLAKQAA  170 (244)
T ss_pred             cccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhhhccCChHHHHHhHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998887633


Q ss_pred             cccC-CCCC---CCCCCCCcccccc-CCCCCCCCcCCchHhhhccCC-CCchHHHHHHHHHHHHHhhhccCCC
Q 027085          162 SEQL-SPES---PNEENSRPKVEKV-GSGEDMKTIDTPKEARKNRKQ-SFPTWMLLLLVSIFGIVMALPLLQL  228 (228)
Q Consensus       162 ~~~~-~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~pl~~~  228 (228)
                      +.+. .+++   +......+..++. ..+....-..+++..+++.++ -+|.|.++.++++||++|++||++|
T Consensus       171 ~~~~t~~e~~~~p~~~~~~v~~e~~l~~~~~~~a~~~l~~~~~n~k~~gl~~~~~~~~~v~~g~a~~~~~~~~  243 (244)
T KOG0894|consen  171 AVQGTTPEANGVPAAEFALVENEEILDLGHGRGAEGGLKNLPFNSKQDGLPGWALLALLVFFGFAAALPLVQL  243 (244)
T ss_pred             cccCCCcCcccCcchhhhccCccceecCCcccccchhhccccccchhccccchhHHHHHHHHHHHHHHhhhcc
Confidence            2222 1222   2222333333333 333333344577888888888 7899999999999999999999986

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-43  Score=280.93  Aligned_cols=137  Identities=23%  Similarity=0.602  Sum_probs=129.0

Q ss_pred             cchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccC
Q 027085            4 GCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM   81 (228)
Q Consensus         4 ~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~   81 (228)
                      +--.|++++++||.+.++++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+  |+||++.|+||+|+
T Consensus         9 E~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDI   88 (148)
T KOG0417|consen    9 ELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDI   88 (148)
T ss_pred             HHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHh
Confidence            3346789999999999999999999999999999999999999999999999999999999997  67789999999999


Q ss_pred             CCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           82 SDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        82 L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      |+   +.|+|+++|..||++|++||.+|||+++ +.++.|.         +|++|++.|.++||+||++||.
T Consensus        89 Lk---~~WsPAl~i~~VllsI~sLL~~PnpddP-L~~~ia~---------~~k~d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen   89 LK---DQWSPALTISKVLLSICSLLSDPNPDDP-LVPDIAE---------LYKTDRAKYERTAREWTRKYAM  147 (148)
T ss_pred             hh---ccCChhhHHHHHHHHHHHHhcCCCCCcc-ccHHHHH---------HHHhhHHHHHHHHHHHHHHHhc
Confidence            98   8899999999999999999999999999 6677665         8999999999999999999986

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-41  Score=273.81  Aligned_cols=138  Identities=25%  Similarity=0.606  Sum_probs=129.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.|..+ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+  |+||+.+|+||+
T Consensus        12 kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCL   91 (153)
T COG5078          12 KELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCL   91 (153)
T ss_pred             HHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChh
Confidence            344567888999999999888 99999999999999999999999999999999999999999997  677899999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      ++|+   ++|+|+++|++||++|++||.+||+++| ++.++|+         +|++|+++|.+++|+++++|+.
T Consensus        92 dIL~---~~WsP~~~l~sILlsl~slL~~PN~~~P-ln~daa~---------~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          92 DILK---DRWSPVYTLETILLSLQSLLLSPNPDSP-LNTEAAT---------LYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             HHHh---CCCCccccHHHHHHHHHHHHcCCCCCCC-CChHHHH---------HHHhCHHHHHHHHHHHHHHhcc
Confidence            9998   9999999999999999999999999998 7777776         8999999999999999999975

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=7.1e-39  Score=260.59  Aligned_cols=139  Identities=22%  Similarity=0.566  Sum_probs=130.0

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      +.+.-.+++++++||.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+  |+||+.+|.||+
T Consensus         8 ~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl   87 (152)
T PTZ00390          8 EKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICL   87 (152)
T ss_pred             HHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEEC
Confidence            345667888999999999999999999999999999999999999999999999999999999996  677899999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      ++|+   +.|+|++||.+||++|+++|.+|+++++ ++.++|+         +|++|++.|.++|++|+++|+.
T Consensus        88 ~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~p-ln~~aa~---------~~~~d~~~f~~~a~~~~~~~a~  148 (152)
T PTZ00390         88 DILK---DKWSPALQIRTVLLSIQALLSAPEPDDP-LDTSVAD---------HFKNNRADAEKVAREWNQKYAK  148 (152)
T ss_pred             ccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCc-hHHHHHH---------HHHHCHHHHHHHHHHHHHHHhc
Confidence            9997   8999999999999999999999999998 6766665         8999999999999999999997

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=1.9e-38  Score=256.76  Aligned_cols=138  Identities=25%  Similarity=0.594  Sum_probs=128.7

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      +++.-.+++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  |+||+.+|.||+
T Consensus         7 ~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl   86 (147)
T PLN00172          7 QKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICL   86 (147)
T ss_pred             HHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEc
Confidence            345567889999999999999999999999999999999999999999999999999999999996  677999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                      ++|+   +.|+|+++|++||.+|+++|.+|+++++ ++.++|+         +|.+|++.|.++|++|+++|+
T Consensus        87 ~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p-~n~~aa~---------~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         87 DILR---DQWSPALTVSKVLLSISSLLTDPNPDDP-LVPEIAR---------VFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             ccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCc-hHHHHHH---------HHHHCHHHHHHHHHHHHHHhh
Confidence            9997   8999999999999999999999999997 6666665         899999999999999999997

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-38  Score=242.54  Aligned_cols=134  Identities=28%  Similarity=0.588  Sum_probs=125.4

Q ss_pred             hhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCC
Q 027085            6 FYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSD   83 (228)
Q Consensus         6 ~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~   83 (228)
                      -.++++|+.||+..|.++|+++|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+-  |+|||.+|.+|+++|+
T Consensus        14 krlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLq   93 (152)
T KOG0419|consen   14 KRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ   93 (152)
T ss_pred             HHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHh
Confidence            36799999999999999999999999999999999999999999999999999999999993  6779999999999998


Q ss_pred             CCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           84 FHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        84 ~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                         ..|+|.|++..||++||+||.+|||+.| .|.++|+         +|++|+.+|.+.+++.+++..
T Consensus        94 ---NrWsp~Ydva~ILtsiQslL~dPn~~sP-aN~eAA~---------Lf~e~~rey~rrVk~~veqsw  149 (152)
T KOG0419|consen   94 ---NRWSPTYDVASILTSIQSLLNDPNPNSP-ANSEAAR---------LFSENKREYERRVKETVEQSW  149 (152)
T ss_pred             ---cCCCCchhHHHHHHHHHHHhcCCCCCCc-ccHHHHH---------HHhhChHHHHHHHHHHHHHhh
Confidence               8999999999999999999999999998 6666664         999999999999999988754

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.7e-34  Score=223.08  Aligned_cols=135  Identities=21%  Similarity=0.482  Sum_probs=120.7

Q ss_pred             hhhCCCCCEEEeeCC-----CCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            8 HVQEPVSHVVARPSP-----NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         8 l~~~p~~gi~v~p~~-----~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ..++.+-|+++.|..     .|++.|+|.|.|+.||+||||.|.+.+.||++||+.||+++|.+|  |+|||.+|.|||+
T Consensus        16 wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLs   95 (158)
T KOG0424|consen   16 WRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLS   95 (158)
T ss_pred             HhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehh
Confidence            467788999999853     479999999999999999999999999999999999999999998  7889999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      +|+- ..+|+|+.||.+||.+|+.||.+||+.++ .+. +|        ..+|..|+..|.+++|.++++|+.
T Consensus        96 iL~e-~~~W~paitikqiL~gIqdLL~~Pn~~~p-Aq~-eA--------~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen   96 ILNE-EKDWRPAITIKQILLGIQDLLDTPNITSP-AQT-EA--------YTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             hhcc-ccCCCchhhHHHHHHHHHHHhcCCCCCCc-hhh-HH--------HHHHhhCHHHHHHHHHHHHHHhcc
Confidence            9982 13599999999999999999999999986 333 33        248999999999999999999875

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-33  Score=223.77  Aligned_cols=139  Identities=22%  Similarity=0.481  Sum_probs=123.2

Q ss_pred             hhhhhCCCCCEEEeeCC-CCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCC
Q 027085            6 FYHVQEPVSHVVARPSP-NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMS   82 (228)
Q Consensus         6 ~~l~~~p~~gi~v~p~~-~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L   82 (228)
                      -.|+++|.+|+.+...+ .|+++|.+.|+||++|+||||.|+..+.||.+||+.||+++|+|.  |+|||.+|+||++||
T Consensus        15 k~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISIL   94 (171)
T KOG0425|consen   15 KELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISIL   94 (171)
T ss_pred             HHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEee
Confidence            45789999999998755 599999999999999999999999999999999999999999994  666999999999999


Q ss_pred             CC----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           83 DF----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        83 ~~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                      .-          ..+.|.|..|+++||++|.++|.+||-++| .|-+||.         +|++++++|+++++.+|++..
T Consensus        95 H~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SP-ANVDAa~---------~~Ren~~EykkkV~r~vr~s~  164 (171)
T KOG0425|consen   95 HPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESP-ANVDAAK---------EWRENPEEYKKKVRRCVRRSQ  164 (171)
T ss_pred             cCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCc-cchHHHH---------HHhhCHHHHHHHHHHHHHHHH
Confidence            62          136999999999999999999999888886 4555543         899999999999999999866


Q ss_pred             hh
Q 027085          153 EQ  154 (228)
Q Consensus       153 ~~  154 (228)
                      +.
T Consensus       165 e~  166 (171)
T KOG0425|consen  165 EE  166 (171)
T ss_pred             Hh
Confidence            54

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=9.2e-34  Score=226.77  Aligned_cols=134  Identities=29%  Similarity=0.689  Sum_probs=118.0

Q ss_pred             ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.++++++.|+.+.+.++ |+++|+++|.||.+|||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||+
T Consensus         4 ~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl   83 (140)
T PF00179_consen    4 KELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICL   83 (140)
T ss_dssp             HHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGH
T ss_pred             HHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchh
Confidence            455678899999999999886 99999999999999999999999999999999999999999995  778999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV  148 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v  148 (228)
                      ++|+  .+.|+|+++|.+||.+|+++|.+|+++++ .+.++++         +|.+|++.|.++||+|.
T Consensus        84 ~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~-~n~~a~~---------~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   84 DILN--PESWSPSYTIESILLSIQSLLSEPNPEDP-LNEEAAE---------LYKNDREEFEKKAREWA  140 (140)
T ss_dssp             GGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTST-SSHHHHH---------HHHHCHHHHHHHHHHH-
T ss_pred             hhhh--cccCCcccccccHHHHHHHHHhCCCCCCc-chHHHHH---------HHHHCHHHHHHHHHHcC
Confidence            9987  34699999999999999999999998887 6666665         89999999999999984

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-33  Score=221.02  Aligned_cols=135  Identities=20%  Similarity=0.496  Sum_probs=122.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++...|+-...+||++.|+.||++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+||  |+||+..|.|||+
T Consensus        36 ~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLD  115 (175)
T KOG0421|consen   36 SELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLD  115 (175)
T ss_pred             HHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHH
Confidence            44455666678999999999999999999999999999999999999999999999999999998  7889999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY  151 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~  151 (228)
                      ||+   +.|+..|++++||++||+||-+||-.+| +|..+|+         ++. |.++|++...++-+++
T Consensus       116 ILk---dKWSa~YdVrTILLSiQSLLGEPNn~SP-LNaqAAe---------lW~-d~~eykk~l~~~Y~~~  172 (175)
T KOG0421|consen  116 ILK---DKWSAVYDVRTILLSIQSLLGEPNNSSP-LNAQAAE---------LWS-DQEEYKKYLEALYKEI  172 (175)
T ss_pred             HHH---HHHHHHHhHHHHHHHHHHHhCCCCCCCc-chhHHHH---------Hhc-CHHHHHHHHHHHhhcc
Confidence            998   9999999999999999999999999998 7777775         776 9999999887776653

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=1.1e-32  Score=220.99  Aligned_cols=133  Identities=27%  Similarity=0.615  Sum_probs=121.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  |++|+.+|.||++
T Consensus         6 ~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~   85 (141)
T cd00195           6 KELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLS   85 (141)
T ss_pred             HHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchh
Confidence            45556788999999999999999999999999999999999999999999999999999999984  7778999999999


Q ss_pred             CCCCCCCC-CCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 027085           81 MSDFHPES-WNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV  148 (228)
Q Consensus        81 ~L~~~~~~-W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v  148 (228)
                      +|.   .+ |+|+++|.+||.+|+++|.+|+++++ .|.++|+         +|.+|++.|.++|++|+
T Consensus        86 ~l~---~~~W~p~~~l~~il~~i~~~l~~p~~~~~-~n~~aa~---------~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          86 ILK---THGWSPAYTLRTVLLSLQSLLNEPNPSDP-LNAEAAK---------LYKENREEFKKKAREWT  141 (141)
T ss_pred             hcC---CCCcCCcCcHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHHhC
Confidence            997   55 99999999999999999999999887 6666654         89999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.98  E-value=5.5e-32  Score=217.79  Aligned_cols=138  Identities=27%  Similarity=0.619  Sum_probs=125.1

Q ss_pred             ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      .+.-.+++++++|+++.+.++ |+++|+++|.||.+|||+||.|++.|.||++||++||+|+|.|+  |++|+.+|.||+
T Consensus         5 ~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl   84 (145)
T smart00212        5 KELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICL   84 (145)
T ss_pred             HHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEeh
Confidence            345567888999999999775 99999999999999999999999999999999999999999997  788999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                      ++|.  .++|+|++++.+||.+|+++|.+|+++++ .|.+++.         +|.++++.|.++|+++++||+
T Consensus        85 ~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~-~n~eaa~---------~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       85 DILK--QEKWSPATTLETVLLSIQSLLSEPNPDSP-LNADAAT---------LYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             hhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhC
Confidence            9985  26999999999999999999999999887 5655554         899999999999999999874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.5e-32  Score=225.12  Aligned_cols=129  Identities=21%  Similarity=0.449  Sum_probs=117.3

Q ss_pred             CCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC----CCceecCCCeEeccCCCCCCCC
Q 027085           13 VSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPES   88 (228)
Q Consensus        13 ~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t----Pn~~v~~~G~iCl~~L~~~~~~   88 (228)
                      -.||.+...++|+.+..+.|.||+|||||||+|.++|.+|++|||+||+|+|.|    ||+. ..+|.||+++|+   +.
T Consensus        23 q~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVS-s~tGaICLDilk---d~   98 (200)
T KOG0418|consen   23 QAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVS-SQTGAICLDILK---DQ   98 (200)
T ss_pred             hcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCC-cccccchhhhhh---cc
Confidence            579999999999999999999999999999999999999999999999999999    6653 567999999998   99


Q ss_pred             CCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           89 WNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        89 W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      |.+++|++.+|++||++|..|+|.+|.    .|   ..|   ..|.+|++.|.+.||.|+..||...
T Consensus        99 Wa~slTlrtvLislQalL~~pEp~dPq----Da---vva---~qy~~n~~~F~~TAr~WT~~fA~~~  155 (200)
T KOG0418|consen   99 WAASLTLRTVLISLQALLCAPEPKDPQ----DA---VVA---EQYVDNYEMFYKTARYWTTEFAGGR  155 (200)
T ss_pred             cchhhhHHHHHHHHHHHHcCCCCCChH----HH---HHH---HHHhhhHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999983    12   122   2799999999999999999999873

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-30  Score=203.00  Aligned_cols=135  Identities=24%  Similarity=0.548  Sum_probs=120.0

Q ss_pred             hhhhCCCCCEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCC
Q 027085            7 YHVQEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSD   83 (228)
Q Consensus         7 ~l~~~p~~gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~   83 (228)
                      +|.+++|+||.+.| ++||.++|.+.|.||+||+|+||+|.-++.||.|||..||+++|..-  |+||+.+|+||+++|.
T Consensus        15 qLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILH   94 (165)
T KOG0426|consen   15 QLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH   94 (165)
T ss_pred             HHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEee
Confidence            56789999999998 57889999999999999999999999999999999999999999872  5669999999999996


Q ss_pred             C----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085           84 F----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY  151 (228)
Q Consensus        84 ~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~  151 (228)
                      .          ..+.|+|..+++.||+++.++|.+||-+++ .|..++         .++++|+++|.+.++..+.|.
T Consensus        95 aPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESg-ANvdA~---------~mWRe~R~ef~~i~~~lvrKt  162 (165)
T KOG0426|consen   95 APGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESG-ANVDAC---------KMWREDREEFEKIAKRLVRKT  162 (165)
T ss_pred             CCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccC-cccHHH---------HHHHHhHHHHHHHHHHHHHHh
Confidence            2          236999999999999999999999888776 454444         389999999999999998874

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-29  Score=204.81  Aligned_cols=132  Identities=20%  Similarity=0.502  Sum_probs=121.2

Q ss_pred             CCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC----CCceecCCCeEeccCCCCCCCCC
Q 027085           14 SHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESW   89 (228)
Q Consensus        14 ~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t----Pn~~v~~~G~iCl~~L~~~~~~W   89 (228)
                      .+..|...++++.++++.+.||.+||||||+|+++|.+|++||++.|+|.|.|    ||++ ..+|.|||++++   ..|
T Consensus        18 s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID-e~SGsVCLDViN---QtW   93 (189)
T KOG0416|consen   18 SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID-EASGSVCLDVIN---QTW   93 (189)
T ss_pred             cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch-hccCccHHHHHh---hhh
Confidence            56788888999999999999999999999999999999999999999999999    6665 567999999998   999


Q ss_pred             CCCcchHHHHHh-hhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhhhh
Q 027085           90 NPMWSVSSILTG-LLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQ  159 (228)
Q Consensus        90 ~p~~~i~~vL~~-i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~~~  159 (228)
                      +|.|++..|+.. |-+||..|||.+| +|.+||+         +|..+++.|++++++|++|||.+....+
T Consensus        94 Sp~yDL~NIfetfLPQLL~YPNp~DP-LN~eAAa---------l~l~~~~~Y~~~v~eY~~kYA~~~~~~~  154 (189)
T KOG0416|consen   94 SPLYDLVNIFETFLPQLLRYPNPSDP-LNGEAAA---------LYLRDPEEYEEKVKEYIKKYATPEALKE  154 (189)
T ss_pred             hHHHHHHHHHHHHhHHHhcCCCCCCC-cccHHHH---------HHhcCHHHHHHHHHHHHHHhcChhhhcc
Confidence            999999999965 8899999999999 8888886         8999999999999999999998776544

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.9e-30  Score=206.57  Aligned_cols=138  Identities=17%  Similarity=0.376  Sum_probs=126.9

Q ss_pred             hhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCCC
Q 027085            7 YHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDF   84 (228)
Q Consensus         7 ~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~~   84 (228)
                      -+-..||.||.|.++++|+++..+.|.||.||||++|+|++++.+..|||..||+-+|+|.  |+||..+|+||++.|+ 
T Consensus        21 ~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLK-   99 (223)
T KOG0423|consen   21 SLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLK-   99 (223)
T ss_pred             hcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhh-
Confidence            3556799999999999999999999999999999999999999999999999999999994  5668999999999998 


Q ss_pred             CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhh
Q 027085           85 HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLA  157 (228)
Q Consensus        85 ~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~  157 (228)
                        .+|+|.+.|++||+.|.|||..|+|++. +|.+++.         +..+++++|.++||.|++.|+.....
T Consensus       100 --kDW~p~LGirHvLltikCLLI~PnPESA-LNEeAGk---------mLLEnYdeYa~rARl~TeIHa~p~~~  160 (223)
T KOG0423|consen  100 --KDWNPSLGIRHVLLTIKCLLIEPNPESA-LNEEAGK---------MLLENYDEYARRARLYTEIHAKPKPK  160 (223)
T ss_pred             --cccCcccchhhHhhhhheeeecCChHHH-HhHHHHH---------HHHHhHHHHHHHHHHHHHhhcCCCCC
Confidence              9999999999999999999999999997 6666654         77889999999999999999987443

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.1e-29  Score=196.66  Aligned_cols=140  Identities=23%  Similarity=0.455  Sum_probs=122.3

Q ss_pred             cchhhhhCCCCCEE-EeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            4 GCFYHVQEPVSHVV-ARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         4 ~~~~l~~~p~~gi~-v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      +.-.|+++....+. +..+++|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|+|.|.  |+||++.|.||+.
T Consensus        10 EL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClP   88 (153)
T KOG0422|consen   10 ELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLP   88 (153)
T ss_pred             HHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeee
Confidence            34455666665444 4557889999999999 788999999999999999999999999999994  5668999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQL  156 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~  156 (228)
                      ++.  .++|+|+.++.+||++|..++.+|+|+.+ +..+.|+         +|.+|+..|.++|.++++||++++.
T Consensus        89 iis--~EnWkP~T~teqVlqaLi~liN~P~pe~p-lr~dlA~---------ey~~d~~kF~K~Aee~tkK~~e~rp  152 (153)
T KOG0422|consen   89 IIS--AENWKPATRTEQVLQALIALINDPEPEHP-LRIDLAE---------EYIKDPKKFVKNAEEFTKKYSEKRP  152 (153)
T ss_pred             eee--cccccCcccHHHHHHHHHHHhcCCCcccc-chhhHHH---------HHHHCHHHHHHhHHHHHHHhcCcCC
Confidence            987  49999999999999999999999999998 6666655         8999999999999999999997653

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.9e-27  Score=200.34  Aligned_cols=127  Identities=44%  Similarity=0.965  Sum_probs=120.0

Q ss_pred             hCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeEeccCCCCCCCCC
Q 027085           10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESW   89 (228)
Q Consensus        10 ~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~iCl~~L~~~~~~W   89 (228)
                      ++|...+.+.|.+||+++||++|.||.||-||||+|+.+|.||.|||++||.+..+|||++|..+.+|||+|.++|++.|
T Consensus        24 ~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~nkKiCLSISgyHPEtW  103 (314)
T KOG0428|consen   24 KDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVNKKICLSISGYHPETW  103 (314)
T ss_pred             cCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceeeCceEEEEecCCCcccc
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHhhhccc-cCCCCCCCCCCChHHHHHHHHHHHHHhccC
Q 027085           90 NPMWSVSSILTGLLSFM-MDTSPTTGSVNTTTEEKQRLAKASLAFNCK  136 (228)
Q Consensus        90 ~p~~~i~~vL~~i~~ll-~~p~p~~~~~~~~~a~~~~la~~s~~~~~~  136 (228)
                      .|+|+|++.|++|..+| ..|+-..+++.....+|+.||+.|+.|.|.
T Consensus       104 qPSWSiRTALlAlIgFmPt~p~GAlGSlDYpp~ERr~LAkkS~e~~ck  151 (314)
T KOG0428|consen  104 QPSWSIRTALLALIGFMPTKPEGALGSLDYPPEERRALAKKSQEFCCK  151 (314)
T ss_pred             CcchhHHHHHHHHHccccCCCCCccccCcCCHHHHHHHHHhhcccCcc
Confidence            99999999999999998 445666778889999999999999999887

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.5e-27  Score=189.15  Aligned_cols=129  Identities=21%  Similarity=0.434  Sum_probs=112.5

Q ss_pred             CCCCEEEe-e-CCCCce--EEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCCCC
Q 027085           12 PVSHVVAR-P-SPNDIL--EWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFH   85 (228)
Q Consensus        12 p~~gi~v~-p-~~~dl~--~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~~~   85 (228)
                      -|++++.. + +.+|+.  +++++|. |.++.|+||.|+|++.+|+.||++||+|+|+|.  |+||+.+|+|||+||.  
T Consensus        42 Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILR--  118 (184)
T KOG0420|consen   42 LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILR--  118 (184)
T ss_pred             CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHH--
Confidence            44556532 2 245544  5999999 888899999999999999999999999999994  6668999999999998  


Q ss_pred             CCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhh
Q 027085           86 PESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ  154 (228)
Q Consensus        86 ~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~  154 (228)
                       ++|+|..+|.+|+.+|+.||.+|+++|| +|.+||+         .+..|++.|...+|.+...+...
T Consensus       119 -edW~P~lnL~sIi~GL~~LF~epn~eDp-LN~eAA~---------~l~~n~e~F~~~Vr~~m~gg~v~  176 (184)
T KOG0420|consen  119 -EDWRPVLNLNSIIYGLQFLFLEPNPEDP-LNKEAAA---------VLKSNREGFENNVRRAMSGGCVG  176 (184)
T ss_pred             -hcCccccchHHHHHHHHHHhccCCCccc-ccHHHHH---------HHHhCHHHHHHHHHHHHhcCccC
Confidence             9999999999999999999999999998 8888887         88999999999999998877643

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.5e-23  Score=163.19  Aligned_cols=104  Identities=23%  Similarity=0.533  Sum_probs=97.7

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEe
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLC   78 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iC   78 (228)
                      +++...+|.+||+|+... ..||+.+|.+-+.|-+||.|+|.+|.+.+.||+.||++.|.|.|..|   |++||++|.||
T Consensus        21 qKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHIC   99 (161)
T KOG0427|consen   21 QKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHIC   99 (161)
T ss_pred             HHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEE
Confidence            566778899999999888 78899999999999999999999999999999999999999999995   78899999999


Q ss_pred             ccCCCCCCCCCCCCcchHHHHHhhhccccCC
Q 027085           79 LSMSDFHPESWNPMWSVSSILTGLLSFMMDT  109 (228)
Q Consensus        79 l~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p  109 (228)
                      |++|.   ++|+|++++.+|.++|.++|..-
T Consensus       100 L~iL~---d~WsPAmsv~SvClSIlSMLSSs  127 (161)
T KOG0427|consen  100 LDILY---DSWSPAMSVQSVCLSILSMLSSS  127 (161)
T ss_pred             EEeec---ccCCcchhhHHHHHHHHHHHccC
Confidence            99998   99999999999999999999764

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=4.2e-18  Score=143.28  Aligned_cols=139  Identities=19%  Similarity=0.290  Sum_probs=116.1

Q ss_pred             hhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCC--CCCceeecCC--Ccee-cCCCeEecc
Q 027085            6 FYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY--KPPGILMITP--NGRF-MTQKKLCLS   80 (228)
Q Consensus         6 ~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~--~pP~v~F~tP--n~~v-~~~G~iCl~   80 (228)
                      +.+.+++.+||+|.|+..|-+.|.++|++..| .|.||+|+|.|.+|++||.  .-|+|.|.++  |++| ..++.+|++
T Consensus        29 ~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~  107 (258)
T KOG0429|consen   29 VLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLN  107 (258)
T ss_pred             HHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHh
Confidence            45677899999999999999999999999887 8999999999999999995  4599999994  3333 456889997


Q ss_pred             CCCCCCCCCCC-CcchHHHHHhhhccccCCCCCCCCC-CChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhh
Q 027085           81 MSDFHPESWNP-MWSVSSILTGLLSFMMDTSPTTGSV-NTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLA  157 (228)
Q Consensus        81 ~L~~~~~~W~p-~~~i~~vL~~i~~ll~~p~p~~~~~-~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~  157 (228)
                      -.  . ..|+- ..+|++||..||.+|.+|+-..+.+ |.+|+.         +|.+++++|+++++++++....-..+
T Consensus       108 ra--f-~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~---------l~~k~r~ef~~rvqe~vk~sr~~iyD  174 (258)
T KOG0429|consen  108 RA--F-PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAV---------LYKKHRDEFRERVQECVKASRSMIYD  174 (258)
T ss_pred             hh--h-hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHH---------HHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence            42  2 45976 7889999999999999988777745 455544         89999999999999999988765444

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.8e-16  Score=155.79  Aligned_cols=108  Identities=24%  Similarity=0.464  Sum_probs=96.8

Q ss_pred             hhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC----CCceecCCCeEeccC
Q 027085            6 FYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSM   81 (228)
Q Consensus         6 ~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t----Pn~~v~~~G~iCl~~   81 (228)
                      ..|..+-+.||+|+-.++-+.-..++|.||.||||++|.|.|.|.||.+||..||.+++.+    =|+|.|.+|+||+++
T Consensus       861 ~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~  940 (1101)
T KOG0895|consen  861 KILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSL  940 (1101)
T ss_pred             HhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhh
Confidence            3566778899999999999888999999999999999999999999999999999999998    267799999999999


Q ss_pred             CCCC----CCCCCCCcchHHHHHhhhccccCCCCCC
Q 027085           82 SDFH----PESWNPMWSVSSILTGLLSFMMDTSPTT  113 (228)
Q Consensus        82 L~~~----~~~W~p~~~i~~vL~~i~~ll~~p~p~~  113 (228)
                      |+..    .+.|+|+-+|.+||.+||.|..+..|.-
T Consensus       941 l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~  976 (1101)
T KOG0895|consen  941 LNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYF  976 (1101)
T ss_pred             hccccCCCccccCcchhHHHHHHHhhhhhccccccc
Confidence            9732    3799999999999999999998766653

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.1e-13  Score=137.46  Aligned_cols=110  Identities=25%  Similarity=0.498  Sum_probs=98.0

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC-----CceecCCCe
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-----NGRFMTQKK   76 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP-----n~~v~~~G~   76 (228)
                      +.+..-+.++.++|+.+.|.+..+...+++|.||.||||++|+|.|.|.||..||..||.++++|-     |+|.|.+|+
T Consensus       288 ~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GK  367 (1101)
T KOG0895|consen  288 AKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGK  367 (1101)
T ss_pred             HHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCce
Confidence            345667889999999999999999999999999999999999999999999999999999999992     666889999


Q ss_pred             EeccCCCC-CC---CCCCCC-cchHHHHHhhhccccCCCC
Q 027085           77 LCLSMSDF-HP---ESWNPM-WSVSSILTGLLSFMMDTSP  111 (228)
Q Consensus        77 iCl~~L~~-~~---~~W~p~-~~i~~vL~~i~~ll~~p~p  111 (228)
                      ||+++|.. ..   +.|+|. .+|.++|..|+.++.+..|
T Consensus       368 VcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~P  407 (1101)
T KOG0895|consen  368 VCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEP  407 (1101)
T ss_pred             EEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCc
Confidence            99999852 22   789997 8999999999999987533

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.3e-10  Score=91.37  Aligned_cols=83  Identities=24%  Similarity=0.352  Sum_probs=65.8

Q ss_pred             ceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEeccCCCCCCCCCCCCcchHHHHHh
Q 027085           25 ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTG  101 (228)
Q Consensus        25 l~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~  101 (228)
                      +..|.++|.||+.|+||+-+|.++|.+.++||..||.|+|.|.   ++....+|.|--..+... +.|+..|+++.||..
T Consensus        38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L-~~W~~~y~~~~vl~~  116 (138)
T KOG0896|consen   38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVL-ARWQRSYSIKMVLGQ  116 (138)
T ss_pred             EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchh-hcccccchhhHHHHh
Confidence            6789999999999999999999999999999999999999994   221144444432222111 799999999999999


Q ss_pred             hhccccC
Q 027085          102 LLSFMMD  108 (228)
Q Consensus       102 i~~ll~~  108 (228)
                      ++.+|..
T Consensus       117 lr~~m~~  123 (138)
T KOG0896|consen  117 LRKEMMS  123 (138)
T ss_pred             hhHHHHH
Confidence            9976643

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=7.3e-07  Score=68.47  Aligned_cols=64  Identities=14%  Similarity=0.420  Sum_probs=55.5

Q ss_pred             EEEEEEcCCCCCCCCCceeecCCC---ceecCCCeEeccCCCCCCCCCCCCcchHHHHHhhhccccCCC
Q 027085           45 YYGKIKFPPEYPYKPPGILMITPN---GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTS  110 (228)
Q Consensus        45 f~~~i~fp~~YP~~pP~v~F~tPn---~~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~  110 (228)
                      .-+.+.|+++||+.||.++-..|+   +.+-.+|.||+.+|+  ++.|+.+|+++.++++|...+..-.
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt--~qgwssay~Ve~vi~qiaatlVkG~   79 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT--KQGWSSAYEVERVIMQIAATLVKGG   79 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc--cccccchhhHHHHHHHHHHHhhccc
Confidence            445678999999999999999985   457788999999997  5999999999999999999886643

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.02  E-value=6.6e-06  Score=65.41  Aligned_cols=68  Identities=25%  Similarity=0.590  Sum_probs=56.2

Q ss_pred             CCcEEEEEEEcCCCCCCCCCceeecCC-----CceecCCCeEeccCCCCCCCCCCCCcchHHHHHhhhccccC
Q 027085           41 AGGYYYGKIKFPPEYPYKPPGILMITP-----NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD  108 (228)
Q Consensus        41 egG~f~~~i~fp~~YP~~pP~v~F~tP-----n~~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~  108 (228)
                      .|+.|.+.|.||++||..||.|....|     -+|++.+|.+|+---....+.|.|.-.+.++|..+..+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999977753     24588999999931122238999999999999999999974

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.97  E-value=1.1e-05  Score=63.26  Aligned_cols=78  Identities=21%  Similarity=0.398  Sum_probs=55.2

Q ss_pred             CceEEEEEEEcCCCCCCCCcEE--EEEEEcCCCCCCCCCceeecC-------CCceecCCCeEeccCCCCCCCCCCC-Cc
Q 027085           24 DILEWHYVLEGSNGTPFAGGYY--YGKIKFPPEYPYKPPGILMIT-------PNGRFMTQKKLCLSMSDFHPESWNP-MW   93 (228)
Q Consensus        24 dl~~w~~~I~Gp~~TpYegG~f--~~~i~fp~~YP~~pP~v~F~t-------Pn~~v~~~G~iCl~~L~~~~~~W~p-~~   93 (228)
                      .+....++|.-    .|+|..|  -+.|-+|.+||..||.+....       ++-+|+.+|+|.+..|    ++|++ ..
T Consensus        31 ~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL----~~W~~~~s  102 (121)
T PF05743_consen   31 LLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL----QNWNPPSS  102 (121)
T ss_dssp             EEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH----HT--TTTS
T ss_pred             eEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh----ccCCCCCC
Confidence            35566666663    6888888  456779999999999986553       2337899999999998    58988 88


Q ss_pred             chHHHHHhhhccccCC
Q 027085           94 SVSSILTGLLSFMMDT  109 (228)
Q Consensus        94 ~i~~vL~~i~~ll~~p  109 (228)
                      +|.+++..+...|.+.
T Consensus       103 ~L~~lv~~l~~~F~~~  118 (121)
T PF05743_consen  103 NLVDLVQELQAVFSEE  118 (121)
T ss_dssp             -HHHHHHHHHHCCCHS
T ss_pred             CHHHHHHHHHHHHhHc
Confidence            9999999988888653

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.0025  Score=57.79  Aligned_cols=82  Identities=20%  Similarity=0.374  Sum_probs=62.9

Q ss_pred             CceEEEEEEEcCCCCCCCCcEEEE--EEEcCCCCCCCCCceeecC-C------CceecCCCeEeccCCCCCCCCCCC-Cc
Q 027085           24 DILEWHYVLEGSNGTPFAGGYYYG--KIKFPPEYPYKPPGILMIT-P------NGRFMTQKKLCLSMSDFHPESWNP-MW   93 (228)
Q Consensus        24 dl~~w~~~I~Gp~~TpYegG~f~~--~i~fp~~YP~~pP~v~F~t-P------n~~v~~~G~iCl~~L~~~~~~W~p-~~   93 (228)
                      +++...++|.    .+|.|-.|.+  .|-+.+.||+.||-+.... +      +-+|+.+|.|-|..|+    +|.+ ++
T Consensus        51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh----~W~~pss  122 (365)
T KOG2391|consen   51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH----NWDPPSS  122 (365)
T ss_pred             chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc----cCCCccc
Confidence            4566666665    5788887765  5669999999999875442 1      2468999999999994    8987 88


Q ss_pred             chHHHHHhhhccccCCCCCC
Q 027085           94 SVSSILTGLLSFMMDTSPTT  113 (228)
Q Consensus        94 ~i~~vL~~i~~ll~~p~p~~  113 (228)
                      ++..++..+...|.++.|..
T Consensus       123 dLv~Liq~l~a~f~~~pP~y  142 (365)
T KOG2391|consen  123 DLVGLIQELIAAFSEDPPVY  142 (365)
T ss_pred             hHHHHHHHHHHHhcCCCccc
Confidence            89999998888887765543

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=96.08  E-value=0.036  Score=43.58  Aligned_cols=91  Identities=15%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             CCEEEeeCCCCceEEEEEEEc---CCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeE--eccCCC-----
Q 027085           14 SHVVARPSPNDILEWHYVLEG---SNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKL--CLSMSD-----   83 (228)
Q Consensus        14 ~gi~v~p~~~dl~~w~~~I~G---p~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~i--Cl~~L~-----   83 (228)
                      .|+...-..+.-..|.+ |.|   |+| .|.+..-.+-|.+|..||..+|.+-+..|....-..|.|  |-+...     
T Consensus        12 ~g~~~E~v~eg~~~~li-i~~~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~   89 (122)
T PF14462_consen   12 RGLRWETVTEGGRRWLI-IKGYPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGR   89 (122)
T ss_pred             cCceEEEEEeCCccEEE-EeCCcCCCC-ccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCe
Confidence            35555555555556655 666   555 699999999999999999999998888874332233444  444322     


Q ss_pred             ------CCCCCCCC-CcchHHHHHhhhccc
Q 027085           84 ------FHPESWNP-MWSVSSILTGLLSFM  106 (228)
Q Consensus        84 ------~~~~~W~p-~~~i~~vL~~i~~ll  106 (228)
                            -|...|+| .-+|.+.|..|...|
T Consensus        90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L  119 (122)
T PF14462_consen   90 TWQRWSRHNNPWRPGVDDLWTHLARVEHAL  119 (122)
T ss_pred             eeeeecCCCCCCCCCCCcHHHHHHHHHHHH
Confidence                  23357888 345777776666544

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=93.40  E-value=0.096  Score=42.17  Aligned_cols=53  Identities=23%  Similarity=0.553  Sum_probs=25.5

Q ss_pred             EEEEEEcCCCCCCCCCceeecC---CCceecCCCeEeccCCCCCCCCC---CCCcchHHHH
Q 027085           45 YYGKIKFPPEYPYKPPGILMIT---PNGRFMTQKKLCLSMSDFHPESW---NPMWSVSSIL   99 (228)
Q Consensus        45 f~~~i~fp~~YP~~pP~v~F~t---Pn~~v~~~G~iCl~~L~~~~~~W---~p~~~i~~vL   99 (228)
                      |.+++.+|..||..||.|..-.   .-.-.|..|+||++. .|. .-|   .|.+.|.+.|
T Consensus        77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~-HFk-PLWakN~PkfGIaHal  135 (161)
T PF08694_consen   77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTD-HFK-PLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---T-THH-HHHHCTTTT--HHHHH
T ss_pred             EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeec-ccc-hhhhhcCCchhHHHHH
Confidence            6677889999999999986543   112257899999975 121 344   4566666654

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=92.34  E-value=0.78  Score=33.83  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             CcEEEEEEEcCCCCCCCCCceeecCC
Q 027085           42 GGYYYGKIKFPPEYPYKPPGILMITP   67 (228)
Q Consensus        42 gG~f~~~i~fp~~YP~~pP~v~F~tP   67 (228)
                      .-.+.+.+.||++||..+|.|.+.++
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEECC
Confidence            34589999999999999999887653

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=91.99  E-value=0.28  Score=36.47  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=27.4

Q ss_pred             CCceEEEEEEEc--CCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC
Q 027085           23 NDILEWHYVLEG--SNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP   67 (228)
Q Consensus        23 ~dl~~w~~~I~G--p~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP   67 (228)
                      .+...+.+.+.+  ...+.-....+.+.+.||++||..+|.|...++
T Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~   73 (113)
T PF05773_consen   27 KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP   73 (113)
T ss_dssp             SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred             CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence            334455555522  233344556899999999999999999986653

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=90.59  E-value=0.23  Score=40.87  Aligned_cols=65  Identities=28%  Similarity=0.588  Sum_probs=47.6

Q ss_pred             CcEE---EEEEEcCCCCCCCCCceeecC---C-C-ceecCC-----CeEeccCCCCCCCCCCCCcchHHHHHhhhccccC
Q 027085           42 GGYY---YGKIKFPPEYPYKPPGILMIT---P-N-GRFMTQ-----KKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD  108 (228)
Q Consensus        42 gG~f---~~~i~fp~~YP~~pP~v~F~t---P-n-~~v~~~-----G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~  108 (228)
                      +|+.   .+.|.|+.+||..+|.|.+.-   | + +|+...     ..+|+.--..  .+|.+.+++..+|..|...|.+
T Consensus        49 ~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~--~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   49 VGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW--SEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             CCccccceEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH--HHhhhccCHHHHHHHHHHHHHH
Confidence            3555   345789999999999776654   2 2 334444     6799975443  6899999999999999888743

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.12  E-value=1.2  Score=35.35  Aligned_cols=73  Identities=19%  Similarity=0.454  Sum_probs=45.7

Q ss_pred             ceEEEEEEEcCCCCCCCCc----------EEEEEEEcCCCCCCCCCceeecC---CCceecCCCeEeccCCCCCCCCC--
Q 027085           25 ILEWHYVLEGSNGTPFAGG----------YYYGKIKFPPEYPYKPPGILMIT---PNGRFMTQKKLCLSMSDFHPESW--   89 (228)
Q Consensus        25 l~~w~~~I~Gp~~TpYegG----------~f~~~i~fp~~YP~~pP~v~F~t---Pn~~v~~~G~iCl~~L~~~~~~W--   89 (228)
                      -..|.-.=..++||-|-|.          .|.+++.+|-.||..+|.|-.--   .--..+..|.||+..  ..+.-|  
T Consensus        50 d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~--hfkplwar  127 (167)
T KOG3357|consen   50 DNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTD--HFKPLWAR  127 (167)
T ss_pred             CCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeecc--ccchhhhh
Confidence            3445444456788888774          35667778999999999886432   111257789999963  112455  


Q ss_pred             -CCCcchHHHH
Q 027085           90 -NPMWSVSSIL   99 (228)
Q Consensus        90 -~p~~~i~~vL   99 (228)
                       .|.+.|.+.+
T Consensus       128 n~pkfgiaha~  138 (167)
T KOG3357|consen  128 NVPKFGIAHAM  138 (167)
T ss_pred             cCcchhHHHHH
Confidence             3445555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		9e-45
1jas_A	152	Hsubc2b Length = 152		1e-10
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		7e-10
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		7e-10
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		7e-10
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		7e-10
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		7e-10
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		7e-10
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		7e-10
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		7e-10
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		8e-10
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		8e-10
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		9e-10
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		9e-10
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		9e-10
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-09
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-09
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-09
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		2e-09
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-09
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		4e-09
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		4e-09
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		5e-09
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		5e-09
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		5e-09
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-09
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		5e-09
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		6e-09
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		6e-09
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		1e-08
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		1e-08
3jvz_A	146	E2~ubiquitin-Hect Length = 146		1e-08
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-08
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-08
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		2e-08
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-08
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		2e-07
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		2e-07
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		2e-07
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		3e-07
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		4e-07
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		5e-07
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		1e-06
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		4e-06
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		4e-06
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		4e-06
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		5e-06
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		8e-06
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		1e-05
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		1e-05
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		1e-05
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		1e-05
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		1e-05
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		2e-05
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		3e-05
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		5e-05
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		5e-05
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		6e-05
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		2e-04
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		2e-04
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		2e-04
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		2e-04
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		2e-04
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		4e-04
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		4e-04
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		5e-04
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		5e-04
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		6e-04
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		6e-04
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		6e-04
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		7e-04
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		7e-04
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		7e-04
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		7e-04
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		8e-04
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		8e-04
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		8e-04
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		9e-04

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 110/155 (70%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct: 28  KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 87
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
           RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++              K++LA  
Sbjct: 88  RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQ 147
Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
           SLAFN K+  F +LFPE VE+  ++Q A+  +S +
Sbjct: 148 SLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 182

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 6   FYHVQE-PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGIL- 63
           F  +QE P   V   PS N+I++W+ V+ G  GTPF  G +   I+F  EYP KPP +  
Sbjct: 13  FKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRF 72
Query: 64  ---MITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
              M  PN        +CL   D     W+P + VSSILT + S +
Sbjct: 73  LSKMFHPN--VYADGSICL---DILQNRWSPTYDVSSILTSIQSLL 113

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 24  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 83
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 84  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 122

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 16  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 76  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 19  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 78
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 79  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 117

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 24  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 83
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 84  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 122

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 16  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 76  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 13  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 72
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 73  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 111

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 16  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 76  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 14  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 74  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 112

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           Q+P + +   P  N+I+ W+ V+ G + TP+ GG +   ++F  +YP KPP +  ++   
Sbjct: 18  QDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF 77
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN        +CL   D     W+P++ V++ILT + S + D
Sbjct: 78  HPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 115

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 32  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 91
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 92  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 130

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P ++  A P  +D+  W   + G   +P++GG ++  I FP +YP+KPP +   T   
Sbjct: 35  KDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIY 94
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN    +Q  +CL   D   + W+P  ++S +L  + S + D
Sbjct: 95  HPN--INSQGAICL---DILKDQWSPALTISKVLLSISSLLTD 132

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 22  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 81
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 82  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 120

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 16  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W P  ++S +L  + S + D
Sbjct: 76  YHPN--INSNGSICL---DILRSQWGPALTISKVLLSICSLLCD 114

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 16  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 76  YHPN--INSNGSICL---DALRSQWSPALTISKVLLSICSLLCD 114

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 11  EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--N 68
           +P  +  A P  ++I EW   + G  G+ + GG ++  I F PEYP+KPP +   T   +
Sbjct: 63  DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH 122
Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
               +Q  +CL   D   ++W+P  ++S +L  + S + D
Sbjct: 123 CNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTD 159

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W     G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 16  ARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 76  YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +   A P  +D+  W   + G + +P+ GG ++  I FP +YP+KPP +   T   
Sbjct: 20  RDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIY 79
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN    +   +CL   D     W+P  +VS +L  + S + D
Sbjct: 80  HPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 117

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P S   A P  +D+  W   + G   +P+AGG ++  I FP +YP+KPP +   T   
Sbjct: 15  KDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIY 74
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN    +   +CL   D   + W+P  ++S +L  + S + D
Sbjct: 75  HPN--INSNGSICL---DILRDQWSPALTISKVLLSISSLLTD 112

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 16  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                     +S+ D     W+P  ++S +L  + S + D
Sbjct: 76  YHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 114

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +   A P  +D+  W   + G   +P+AGG ++  I FP +YP+KPP I   T   
Sbjct: 16  RDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIY 75
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN        +CL   D   + W+P  ++S +L  + S + D
Sbjct: 76  HPN--INANGNICL---DILKDQWSPALTLSKVLLSICSLLTD 113

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 14  ARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                     +S+ D     W+P  ++S +L  + S + D
Sbjct: 74  YHPAINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 112

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +H  A P  +D+  W   + G   + + GG ++  + FP +YP+KPP I   T   
Sbjct: 17  RDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY 76
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN    +   +CL   D     W+P  +VS +L  + S + D
Sbjct: 77  HPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 114

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 11  EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--N 68
           +P  +  A P  ++I EW   + G  G+ + GG ++  I F P+YP+KPP +   T   +
Sbjct: 18  DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYH 77
Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
               +Q  +CL   D   ++W+P  ++S +L  + S + D
Sbjct: 78  CNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTD 114

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +H  A P  +D+  W   + G   + + GG ++  + FP +YP+KPP I   T   
Sbjct: 33  RDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY 92
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN    +   +CL   D     W+P  +VS +L  + S + D
Sbjct: 93  HPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 130

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +H  A P  +D+  W   + G   + + GG ++  + FP +YP+KPP I   T   
Sbjct: 21  RDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY 80
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN    +   +CL   D     W+P  +VS +L  + S + D
Sbjct: 81  HPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 118

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 17  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 76
Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                     +S+ D     W+P  ++S +L  + S + D
Sbjct: 77  YHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 115

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 14  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                     +S+ D     W+P  ++S +L  + S + D
Sbjct: 74  YHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 112

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +   A P  +D+  W   + G   +P+ GG ++  I FP +YP+KPP +   T   
Sbjct: 18  RDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 77
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN    +   +CL   D     W+P  ++S +L  + S + D
Sbjct: 78  HPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 115

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           Q+P  +  A P  +DI  W   + G + +P+ GG ++  + FP +YP+K P +  +T   
Sbjct: 18  QDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVY 77
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN        +CL   D   + W+P  ++S +L  + S + D
Sbjct: 78  HPN--INKNGVICL---DILKDQWSPALTLSRVLLSISSLLTD 115

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 13  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 72
Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                     +S+ D     W+P   +S +L  + S + D
Sbjct: 73  YHPNINSNGSISL-DILRSQWSPALKISKVLLSICSLLCD 111

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P + V   P+ ++IL W  ++ G   TPF  G +   ++F  EYP KPP +  I+   
Sbjct: 18  EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMF 77
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            PN        +CL   D     W+P + V++ILT + S +
Sbjct: 78  HPN--VYADGSICL---DILQNRWSPTYDVAAILTSIQSLL 113

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T  
Sbjct: 32  ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 91
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
             PN    +   + L   D     W+P  ++S +L  + S + D
Sbjct: 92  YHPN--INSNGSIXL---DILRSQWSPALTISKVLLSICSLLCD 130

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P + V   P+ ++IL W  ++ G   TPF  G +   ++F  EYP KPP +  I+   
Sbjct: 21  EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMF 80
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            PN        +CL   D     W+P + V++ILT + S +
Sbjct: 81  HPN--VYADGSICL---DILQNRWSPTYDVAAILTSIQSLL 116

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +H  A P  +D+  W   + G   + + GG ++  + FP +YP+KPP I   T   
Sbjct: 21  RDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY 80
Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN       KL     D     W+P  +VS +L  + S + D
Sbjct: 81  HPNINSNGSIKL-----DILRSQWSPALTVSKVLLSICSLLCD 118

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 25/110 (22%)
Query: 16  VVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM--------IT 66
           +VA P S N+I  W  +++G   TP+A G +  K++FP +YP  PP +          I 
Sbjct: 24  IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83
Query: 67  PNGRFMTQKKLCLS----------MSDFHPESWNPMWSVSSILTGLLSFM 106
           PNG      ++C+S          M +   E W+P+ SV  IL  ++S +
Sbjct: 84  PNG------EVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML 127

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 11  EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 66
           E V  + A    ++  EW   ++G  GTP+ GG++   I  P +YPY PP I  +T    
Sbjct: 38  ENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97
Query: 67  PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
           PN    T   +CL   D     W+P  ++ + L  + + + D
Sbjct: 98  PNISSQT-GAICL---DVLKNEWSPALTIRTALLSIQALLSD 135

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 16  VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGIL----MITPNGRF 71
           V A P P++++ W+ ++ G   TP+  G +   ++F  EYP KPP +     M  PN   
Sbjct: 24  VSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN--V 81
Query: 72  MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
               ++CL   D     W P + V+SILT + S   D
Sbjct: 82  YANGEICL---DILQNRWTPTYDVASILTSIQSLFND 115

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 16  VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRF 71
           V A+    DI  W   + G  GTP+ GG++   I  PP+YPY PP +  +T    PN   
Sbjct: 65  VSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISS 124
Query: 72  MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            T   +CL   D     W+P  ++ + L  + + + D
Sbjct: 125 QT-GAICL---DILKHEWSPALTIRTALLSIQAMLAD 157

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
           D+  W   + G   T + GGY+  ++KFP +YPY PP    +T    PN        +C+
Sbjct: 33  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN--IYETGDVCI 90
Query: 80  SMSDFHP------------ESWNPMWSVSSILTGLLSFM 106
           S+   HP            E WNP  +V +IL  ++S +
Sbjct: 91  SI--LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 127

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
           D+  W   + G   T + GGY+  ++KFP +YPY PP    +T    PN        +C+
Sbjct: 36  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN--IYETGDVCI 93
Query: 80  SMSDFHP------------ESWNPMWSVSSILTGLLSFM 106
           S+   HP            E WNP  +V +IL  ++S +
Sbjct: 94  SI--LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 130

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 16  VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRF 71
           + A+P   D++EW   +EG   + + G  +   I F  EY Y PP +  IT    PN   
Sbjct: 43  ITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP 102
Query: 72  MTQKKLCLSMSDFHPESWNPMWSVSSILTGL 102
            T +  C+   D +PE WN  +++SSIL  L
Sbjct: 103 HTGQP-CIDFLD-NPEKWNTNYTLSSILLAL 131

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 16  VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT 73
           + A P  +++ +W   L+G   T +    Y   ++FP +YPYKPP +   TP  +     
Sbjct: 29  ITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ 88
Query: 74  QKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
              +CL   D   E+W   + V +IL  L S +
Sbjct: 89  SGNICL---DILKENWTASYDVRTILLSLQSLL 118

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
             EP   ++A P P +   ++ ++ G +GTP+ GG Y  ++  P +YP +PP +  +T  
Sbjct: 14  ANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
             PN   +   ++CL   D   + W+P   + ++L  + + +
Sbjct: 74  YHPNIDKLG--RICL---DILKDKWSPALQIRTVLLSIQALL 110

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
             EP   ++A P P +   ++ ++ G +GTP+ GG Y  ++  P +YP +PP +  +T  
Sbjct: 14  ANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
             PN   +   ++CL   D   + W+P   + ++L  + + +
Sbjct: 74  YHPNIDKLG--RICL---DILKDKWSPALQIRTVLLSIQALL 110

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 24/154 (15%)
Query: 15  HVVARPSPNDILEWH----------YVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM 64
           H++A   P  I  W            +L G+N TP+  G +  ++  P  YP++PP I  
Sbjct: 14  HMLATEPPPGITCWQDKDQMDDLRAQILGGAN-TPYEKGVFKLEVIIPERYPFEPPQIRF 72
Query: 65  ITP--NGRFMTQKKLCLSMSDFHPE-SWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXE 121
           +TP  +    +  ++CL +    P+ +W P  +++++LT +   M +             
Sbjct: 73  LTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP---------- 122
Query: 122 EKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ 155
           +   +A  S  F    PAF K   ++ EK+  Q+
Sbjct: 123 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 23  NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMS 82
           NDI +W  ++ G   T + GG++   + FP +YP KPP +  I+        K+  + +S
Sbjct: 31  NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCIS 90
Query: 83  DFHP------------ESWNPMWSVSSILTGLLSFMMD 108
             H             E W P+ +V +IL  ++S + D
Sbjct: 91  ILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTD 128

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           + EPV  + A P  ++   +H V+ G   +PF GG +  ++  P EYP   P +      
Sbjct: 16  LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 69
Query: 69  GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            RFMT+          ++CL   D   + W+P   + ++L  + + +
Sbjct: 70  -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 112

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           + EPV  + A P  ++   +H V+ G   +PF GG +  ++  P EYP   P +      
Sbjct: 18  LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 71
Query: 69  GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            RFMT+          ++CL   D   + W+P   + ++L  + + +
Sbjct: 72  -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 114

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           + EPV  + A P  ++   +H V+ G   +PF GG +  ++  P EYP   P +      
Sbjct: 14  LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 67
Query: 69  GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            RFMT+          ++CL   D   + W+P   + ++L  + + +
Sbjct: 68  -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 110

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           + EPV  + A P  ++   +H V+ G   +PF GG +  ++  P EYP   P +      
Sbjct: 19  LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 72
Query: 69  GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            RFMT+          ++CL   D   + W+P   + ++L  + + +
Sbjct: 73  -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 115

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           + EPV  + A P  ++   +H V+ G   +PF GG +  ++  P EYP   P +      
Sbjct: 21  LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 74
Query: 69  GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            RFMT+          ++CL   D   + W+P   + ++L  + + +
Sbjct: 75  -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 117

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 10  QEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            +P +H+     S +DI        G  GTP+ GG +   I+ P EYP+KPP +   T  
Sbjct: 16  DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV 75
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
             PN   +T   +CL   D    +W+P+ ++ S L  L + +
Sbjct: 76  YHPNISSVT-GAICL---DILRNAWSPVITLKSALISLQALL 113

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 10  QEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            +P +H+     S +DI        G  GTP+ GG +   I+ P EYP+KPP +   T  
Sbjct: 15  DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV 74
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
             PN   +T   +CL   D    +W+P+ ++ S L  L + +
Sbjct: 75  YHPNISSVT-GAICL---DILKNAWSPVITLKSALISLQALL 112

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM 81
           D++ W   + G   T + GG Y   + FP EYP +PP      P  +        +CLS+
Sbjct: 43  DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 82  SDFHPESWNPMWSVSSILTGLLSFMMD 108
            +   E W P  ++  IL G+   + D
Sbjct: 103 LN-EEEGWKPAITIKQILLGIQDLLDD 128

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 16  VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT 73
           + A P  +++ +W   + G+ GT +    Y   ++FP  YPY  P +  +TP  +    T
Sbjct: 50  ISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 109
Query: 74  QKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
           Q  + L   D   E W+ ++ V +IL  + S +
Sbjct: 110 QGNISL---DILKEKWSALYDVRTILLSIQSLL 139

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 23  NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMS 82
           ND+  W  ++ G   T + GG +   + FP +YP +PP +  IT        K   + +S
Sbjct: 45  NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCIS 104
Query: 83  DFH------------PESWNPMWSVSSILTGLLSFMMD 108
             H             E W P+ +V +I+  ++S + D
Sbjct: 105 ILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
           ++L W  ++   N  P+  G +  +I FP EYP+KPP I   T    PN     + ++CL
Sbjct: 33  NLLTWQGLIVPDN-PPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN--IDEKGQVCL 89
Query: 80  SMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPA 139
            +     E+W P      ++  L++ + D            EE    +K    F CKN  
Sbjct: 90  PV--ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE---YSKDRKKF-CKNAE 143
Query: 140 FRKLFPEYVEKYNEQQ 155
                 E+ +KY E++
Sbjct: 144 ------EFTKKYGEKR 153

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
           ++L W  ++   N  P+  G +  +I FP EYP+KPP I   T    PN     + ++CL
Sbjct: 31  NLLTWQGLIVPDN-PPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN--IDEKGQVCL 87
Query: 80  SMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPA 139
            +     E+W P      ++  L++ + D            EE  +  K      CKN  
Sbjct: 88  PV--ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF----CKNAE 141
Query: 140 FRKLFPEYVEKYNEQQ 155
                 E+ +KY E++
Sbjct: 142 ------EFTKKYGEKR 151

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 1   MGNGCFYHVQEPVSHVVARP--------SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFP 52
           MGN   Y +Q+ + + +  P         PN+I  W     G   T +A   Y  KI FP
Sbjct: 4   MGNAN-YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFP 62
Query: 53  PEYPYKPPGILMIT---PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            +YP KPP +  +     +    +   +CLS+     + +NP  S+S ++  ++S +
Sbjct: 63  DDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 116

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRF----MTQKKLCL 79
           D+ +W   + G  GT +AGG Y   +++P EYP KPP +    P G +         +CL
Sbjct: 37  DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF--PAGFYHPNVYPSGTICL 94
Query: 80  SMSDFHPESWNPMWSVSSILTGLLSFM 106
           S+ +   + W P  ++  I+ G+   +
Sbjct: 95  SILN-EDQDWRPAITLKQIVLGVQDLL 120

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRF----MTQKKLCL 79
           D+ +W   + G  GT +AGG Y   +++P EYP KPP +    P G +         +CL
Sbjct: 39  DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF--PAGFYHPNVYPSGTICL 96
Query: 80  SMSDFHPESWNPMWSVSSILTGLLSFM 106
           S+ +   + W P  ++  I+ G+   +
Sbjct: 97  SILN-EDQDWRPAITLKQIVLGVQDLL 122

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCL 79
           D+ +W  ++ G + TP+    +   I+ P  YP  PP I  +  N      K    ++CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 80  SMSDFHPESWNPMWSV 95
           ++    PE W P+W +
Sbjct: 106 NI--LKPEEWTPVWDL 119

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCL 79
           D+ +W  ++ G + TP+    +   I+ P  YP  PP I  +  N      K    ++CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 80  SMSDFHPESWNPMWSV 95
           ++    PE W P+W +
Sbjct: 106 NI--LKPEEWTPVWDL 119

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 24  DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCL 79
           D+ +W  ++ G + TP+    +   I+ P  YP  PP I  +  N      K    ++CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 80  SMSDFHPESWNPMWSV 95
           ++    PE W P+W +
Sbjct: 106 NI--LKPEEWTPVWDL 119

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 28  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
           +      +CLS+ +   + W P  ++  IL G+   +
Sbjct: 88  QVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 28  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
                  +CLS+ +   + W P  ++  IL G+   +
Sbjct: 88  NVAPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
           V +PV  + A P  +++  +   +EG   +P+  G +  ++  P +YP + P +  +T  
Sbjct: 16  VSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI 75
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
             PN   +   ++CL   D    +W+P   + ++L  + + +
Sbjct: 76  YHPNIDRLG--RICL---DVLKTNWSPALQIRTVLLSIQALL 112

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 27  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 86
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
                  +CLS+ +   + W P  ++  IL G+   +
Sbjct: 87  NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 122

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 23  NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN----GRFMTQKKLC 78
           N I +W   +EG+ GT + G  +    KF   YP+  P ++    N        +   +C
Sbjct: 51  NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC 110
Query: 79  LSMSDFHPESWNPMWSVSSILTGLLSFM 106
           LS+     E W+P  SV S+   ++S +
Sbjct: 111 LSILT---EDWSPALSVQSVCLSIISML 135

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 25  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 84
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
                  +CLS+ +   + W P  ++  IL G+   +
Sbjct: 85  NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 120

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 9   VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
           V +PV  + A P  +++  +   +EG   +P+  G +  ++  P +YP + P +  +T  
Sbjct: 18  VSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI 77
Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
             PN   +   ++CL   D    +W+P   + ++L  + + +
Sbjct: 78  YHPNIDRLG--RICL---DVLKTNWSPALQIRTVLLSIQALL 114

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 26  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 85
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
                  +CLS+ +   + W P  ++  IL G+   +
Sbjct: 86  NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 121

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 28  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
                  +CLS+ +   + W P  ++  IL G+   +
Sbjct: 88  NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 28  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
                  +CLS+ +   + W P  ++  IL G+   +
Sbjct: 88  NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 28  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
                  +CLS+ +   + W P  ++  IL G+   +
Sbjct: 88  NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17  VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
           VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP      P  + 
Sbjct: 27  VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 86
Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
                  +CLS+ +   + W P  ++  IL G+   +
Sbjct: 87  NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	7e-70
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	4e-21
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-20
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	4e-20
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	4e-20
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	1e-19
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	2e-19
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	6e-19
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	1e-18
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	1e-18
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	2e-18
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	3e-18
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	3e-18
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	3e-18
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	5e-18
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	6e-18
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	6e-18
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	8e-18
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	8e-18
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	9e-18
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	9e-18
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	1e-17
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	1e-17
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	1e-17
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	1e-17
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	2e-17
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-17
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-17
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-17
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	2e-17
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	2e-17
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	3e-17
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	4e-17
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	6e-17
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	8e-17
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	8e-17
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	2e-16
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	8e-16
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	8e-16
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	1e-15
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	1e-15
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	2e-15
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	4e-15
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	6e-15
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	6e-15
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	2e-14
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	2e-14
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	3e-14
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	8e-14
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	2e-12

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  211 bits (538), Expect = 7e-70
 Identities = 85/158 (53%), Positives = 117/158 (74%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct: 28  KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 87

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
           RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  
Sbjct: 88  RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQ 147

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSP 167
           SLAFN K+  F +LFPE VE+  ++Q A+  +S +   
Sbjct: 148 SLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQT 185

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 85.5 bits (212), Expect = 4e-21
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 29/173 (16%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
           ++    V A P P++++ W+ ++ G   TP+  G +   ++F  EYP KPP +  ++   
Sbjct: 18  EDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF 77

Query: 68  ------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTE 121
                 NG       +CL +       W P + V+SILT + S   D +P + +      
Sbjct: 78  HPNVYANGE------ICLDILQ---NRWTPTYDVASILTSIQSLFNDPNPASPANV---- 124

Query: 122 EKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEEN 174
                 +A+  F      + K   E VEK  E         +    +  +E +
Sbjct: 125 ------EAATLFKDHKSQYVKRVKETVEKSWED--DMDDDDDDDDDDDDDEAD 169

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 84.3 bits (209), Expect = 1e-20
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 16/108 (14%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
           +     + A+P   D++EW   +EG   + + G  +   I F  EY Y PP +  IT   
Sbjct: 37  ENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF 96

Query: 68  -------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                   G+       C+   D +PE WN  +++SSIL  L   + +
Sbjct: 97  HPNVDPHTGQ------PCIDFLD-NPEKWNTNYTLSSILLALQVMLSN 137

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 82.3 bits (204), Expect = 4e-20
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           Q+P + +   P  N+I+ W+ V+ G + TP+ GG +   ++F  +YP KPP +  ++   
Sbjct: 18  QDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF 77

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
            PN        +CL   D     W+P++ V++ILT + S + D
Sbjct: 78  HPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 115

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 82.0 bits (203), Expect = 4e-20
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
           + P  +      P++I  W     G   T +A   Y  KI FP  YP KPP +  +    
Sbjct: 34  KNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPP 93

Query: 68  -------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                  NG       +CLS+     + +NP  S+S ++  ++S +     
Sbjct: 94  KHTHVYSNGD------ICLSVLG---DDYNPSLSISGLILSIISMLSSAKE 135

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 81.2 bits (201), Expect = 1e-19
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 28/154 (18%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
                 + A P  +++ +W   L+G   T +    Y   ++FP +YPYKPP +   TP  
Sbjct: 23  MSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW 82

Query: 68  ------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTE 121
                 +G       +CL   D   E+W   + V +IL  L S + + +  +       +
Sbjct: 83  HPNVDQSGN------ICL---DILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAAD 133

Query: 122 EKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ 155
                             ++K+  E  +     +
Sbjct: 134 MWS-----------NQTEYKKVLHEKYKTAQSDK 156

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
             P  +      PN+I  W     G   T +A   Y  KI FP +YP KPP +  +    
Sbjct: 20  NNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPP 79

Query: 68  -------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                  NG       +CLS+     + +NP  S+S ++  ++S +     
Sbjct: 80  KHTHVYSNGD------ICLSLLG---DDYNPSLSISGLVLSIISMLSSAKE 121

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 80.2 bits (198), Expect = 6e-19
 Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 36/174 (20%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP- 67
           +EPV           D+  W   + G   T + GGY+  ++KFP +YPY PP    +T  
Sbjct: 21  EEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 80

Query: 68  -------NGRFMTQKKLCLS----------MSDFHPESWNPMWSVSSILTGLLSFMMDTS 110
                   G       +C+S            +   E WNP  +V +IL  ++S + + +
Sbjct: 81  WHPNIYETGD------VCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPN 134

Query: 111 PTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
             + +             AS+ +  K    +    EY +   +Q L  +  +E+
Sbjct: 135 TFSPAN----------VDASVMYR-KWKESKGKDREYTDIIRKQVLGTKVDAER 177

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 25/118 (21%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
             P   +VA P +  +  EW  ++ G   T F  G +   + FP +YP  PP +      
Sbjct: 17  LNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEM 76

Query: 67  ------PNGRFMTQKKLCLS----------MSDFHPESWNPMWSVSSILTGLLSFMMD 108
                 P+GR      +C+S            +   E W+P+ SV  IL  ++S + +
Sbjct: 77  FHPNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 17/110 (15%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
                 + A P  +++ +W   + G+ GT +    Y   ++FP  YPY  P +  +TP  
Sbjct: 44  MSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCY 103

Query: 68  ------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                  G       + L   D   E W+ ++ V +IL  + S + + + 
Sbjct: 104 HPNVDTQGN------ISL---DILKEKWSALYDVRTILLSIQSLLGEPNI 144

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 10  QEPVSHVVARPSP--NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP 67
            +P   +        N I +W   +EG+ GT + G  +    KF   YP+  P ++    
Sbjct: 36  NDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 95

Query: 68  NGRF----MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
           N        +   +CL       E W+P  SV S+   ++S +
Sbjct: 96  NIPVHPHVYSNGHICL---SILTEDWSPALSVQSVCLSIISML 135

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 77.3 bits (191), Expect = 3e-18
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +   A P  +D+  W   + G   +P+ GG ++  I FP +YP+KPP +   T   
Sbjct: 18  RDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 77

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            PN    +   +CL   D     W+P  ++S +L  + S + D +P
Sbjct: 78  HPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCDPNP 118

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 77.8 bits (192), Expect = 3e-18
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 25/118 (21%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP- 67
           + PV    A     ND+  W  ++ G   T + GG +   + FP +YP +PP +  IT  
Sbjct: 31  KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 90

Query: 68  -------NGRFMTQKKLCLS----------MSDFHPESWNPMWSVSSILTGLLSFMMD 108
                  NG       +C+S            +   E W P+ +V +I+  ++S + D
Sbjct: 91  WHPNVDKNGD------VCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 77.8 bits (192), Expect = 3e-18
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 25/118 (21%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
           ++    +VA P S N+I  W  +++G   TP+A G +  K++FP +YP  PP +      
Sbjct: 18  KDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI 77

Query: 67  ------PNGRFMTQKKLCLS----------MSDFHPESWNPMWSVSSILTGLLSFMMD 108
                 PNG       +C+S          M +   E W+P+ SV  IL  ++S + +
Sbjct: 78  LHPNIYPNGE------VCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE 129

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 77.0 bits (190), Expect = 5e-18
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P ++  A P  +D+  W   + G   +P++GG ++  I FP +YP+KPP +   T   
Sbjct: 35  KDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIY 94

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            PN    +Q  +CL   D   + W+P  ++S +L  + S + D +P
Sbjct: 95  HPN--INSQGAICL---DILKDQWSPALTISKVLLSISSLLTDPNP 135

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 77.1 bits (190), Expect = 6e-18
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 9   VQEPVSHVVARPSP---NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMI 65
           +  P   ++   +P    D+ +W  ++ G + TP+    +   I+ P  YP  PP I  +
Sbjct: 28  IANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFM 87

Query: 66  T-----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                  N +  T  ++CL++    PE W P+W +   +  +   + +   
Sbjct: 88  QNNILHCNVKSAT-GEICLNI--LKPEEWTPVWDLLHCVHAVWRLLREPVC 135

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 77.0 bits (190), Expect = 6e-18
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T   
Sbjct: 33  RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 92

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            PN    +   +CL   D     W+P  ++S +L  + S + D +P
Sbjct: 93  HPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCDPNP 133

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 77.5 bits (191), Expect = 8e-18
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           +   + +       +  E    + G   TP+ GG Y  +IK P  YP+ PP +  IT   
Sbjct: 22  ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            PN   +T   +CL   D   + W    ++ ++L  L + +    P
Sbjct: 82  HPNISSVT-GAICL---DILKDQWAAAMTLRTVLLSLQALLAAAEP 123

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 76.1 bits (188), Expect = 8e-18
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
            EP   ++A P P +   ++ ++ G +GTP+ GG Y  ++  P +YP +PP +  +T   
Sbjct: 15  NEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIY 74

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            PN       ++CL   D   + W+P   + ++L  + + +    P
Sbjct: 75  HPN--IDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSSPEP 115

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 76.2 bits (188), Expect = 9e-18
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
            EPV  + A P  ++   +H V+ G   +PF GG +  ++  P EYP   P +  +T   
Sbjct: 19  AEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY 78

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            PN       ++CL   D   + W+P   + ++L  + + +   +P
Sbjct: 79  HPN--VDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 119

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 77.5 bits (191), Expect = 9e-18
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
            E V  + A    ++  EW   ++G  GTP+ GG++   I  P +YPY PP I  +T   
Sbjct: 37  NENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIW 96

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            PN    T   +CL   D     W+P  ++ + L  + + + D  P
Sbjct: 97  HPNISSQTG-AICL---DVLKNEWSPALTIRTALLSIQALLSDPQP 138

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 9/106 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
            +P  +  A P  ++I EW   + G  G+ + GG ++  I F PEYP+KPP +   T   
Sbjct: 62  LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY 121

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
             N    +Q  +CL   D   ++W+P  ++S +L  + S + D +P
Sbjct: 122 HCN--INSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNP 162

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 76.1 bits (188), Expect = 1e-17
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 17/110 (15%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
            +PV  + A P  +++  +   +EG   +P+  G +  ++  P +YP + P +  +T   
Sbjct: 19  SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY 78

Query: 68  ------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                  GR      +CL   D    +W+P   + ++L  + + +   +P
Sbjct: 79  HPNIDRLGR------ICL---DVLKTNWSPALQIRTVLLSIQALLASPNP 119

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 76.1 bits (188), Expect = 1e-17
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 17/110 (15%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
            +P   +   P+  D+ +    +EG  GTP+AGG +  K+    ++P  PP    +T   
Sbjct: 27  ADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF 86

Query: 68  ------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                 NG       +C+   +     W     +  +L  +   ++  +P
Sbjct: 87  HPNVGANGE------ICV---NVLKRDWTAELGIRHVLLTIKCLLIHPNP 127

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           +   + +       +  E    + G   TP+ GG Y  +IK P  YP+ PP +  IT   
Sbjct: 25  ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            PN   +T   +CL   D   + W    ++ ++L  L + +    P
Sbjct: 85  HPNISSVT-GAICL---DILKDQWAAAMTLRTVLLSLQALLAAAEP 126

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           +  ++      +     ++  +  G NGT + GG +   +  P +YP+  P I  +    
Sbjct: 13  KLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLL 72

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMM 107
            PN    +   +CL   D   ++W P++S+ ++    L  ++
Sbjct: 73  HPNVDEAS-GSVCL---DVINQTWTPLYSLVNVFEVFLPQLL 110

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            +P +H+     S +DI        G  GTP+ GG +   I+ P EYP+KPP +   T  
Sbjct: 15  DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV 74

Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
             PN   +T   +CL   D    +W+P+ ++ S L  L + +    P
Sbjct: 75  YHPNISSVTG-AICL---DILKNAWSPVITLKSALISLQALLQSPEP 117

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 79.2 bits (195), Expect = 2e-17
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 11/172 (6%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           ++P +   A P  +D+  W   + G N +P+ GG ++  I FP +YP+KPP +   T   
Sbjct: 17  RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 76

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEE--K 123
            PN    +   + L   D     W+P  ++S +L  + S + D +P    V         
Sbjct: 77  HPN--INSNGSISL---DILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT 131

Query: 124 QRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENS 175
            R     +A                    +Q   +Q ++ Q    S   E S
Sbjct: 132 DREKYNRIAREWTQKYAMGGSAYDEAIMAQQDRIQQEIAVQNPLVSERLELS 183

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
            EP   +      + + +    + G   TP+  G +  ++  P  YP++PP I  +TP  
Sbjct: 18  TEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIY 77

Query: 68  ------NGRFMTQKKLCLSM-SDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                  GR      +CL +       +W P  +++++LT +   M + +P
Sbjct: 78  HPNIDSAGR------ICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 122

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
                         + L    +    +   + GG +  + + P  Y   PP +  +T   
Sbjct: 28  ANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW 87

Query: 67  -PNGRFMTQKKLCLSM---SDFHPESWNPMWSVSSILTGLLSFMMDT 109
            PN       ++CLS+          W P  ++  ++ GL S   D 
Sbjct: 88  HPN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL 132

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 20/115 (17%)

Query: 10  QEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM 64
           ++      A+P  +     D++ W   + G   T + GG Y   + FP EYP +PP    
Sbjct: 24  RDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRF 83

Query: 65  IT--------PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                     P+G       +CLS+ +   E W P  ++  IL G+   + D + 
Sbjct: 84  TPPLFHPNVYPSGT------VCLSILN-EEEGWKPAITIKQILLGIQDLLDDPNI 131

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 75.0 bits (185), Expect = 3e-17
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)

Query: 10  QEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM 64
           ++      A+P        D+ +W   + G  GT +AGG Y   +++P EYP KPP +  
Sbjct: 18  KDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF 77

Query: 65  IT--------PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                     P+G       +CLS+ +   + W P  ++  I+ G+   +   +P
Sbjct: 78  PAGFYHPNVYPSGT------ICLSILN-EDQDWRPAITLKQIVLGVQDLLDSPNP 125

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 10  QEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM 64
           ++     VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP    
Sbjct: 21  KDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 80

Query: 65  ITP--------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
             P        +G       +CLS+ +   + W P  ++  IL G+   + + + 
Sbjct: 81  EPPLFHPNVYPSGT------VCLSILE-EDKDWRPAITIKQILLGIQELLNEPNI 128

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 74.8 bits (184), Expect = 6e-17
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 11  EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 66
                V A+    DI  W   + G  GTP+ GG++   I  PP+YPY PP +  +T    
Sbjct: 60  STSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWH 119

Query: 67  PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
           PN    T   +CL   D     W+P  ++ + L  + + + D  P
Sbjct: 120 PNISSQT-GAICL---DILKHEWSPALTIRTALLSIQAMLADPVP 160

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 75.2 bits (185), Expect = 8e-17
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
            +P +H+     S +DI        G  GTP+ GG +   I+ P EYP+KPP +   T  
Sbjct: 16  DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV 75

Query: 67  --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
             PN   +T   +CL   D    +W+P+ ++ S L  L + +    P
Sbjct: 76  YHPNISSVTG-AICL---DILRNAWSPVITLKSALISLQALLQSPEP 118

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 75.7 bits (186), Expect = 8e-17
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 11  EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 66
              + +       +  E    + G   TP+ GG Y  +IK P  YP+ PP +  IT    
Sbjct: 75  TSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 134

Query: 67  PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
           PN   +T   +CL   D   + W    ++ ++L  L + +    P
Sbjct: 135 PNISSVT-GAICL---DILKDQWAAAMTLRTVLLSLQALLAAAEP 175

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)

Query: 10  QEPVSHVVARPSPND----ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMI 65
           +      V+    +D    +  W  ++ G   T +    Y  KI+  P+YP  PP +  +
Sbjct: 39  KGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV 98

Query: 66  TP--------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
           T         +          +S+       W   +S+  +L  L   MM 
Sbjct: 99  TKINMNGVNSSNG--VVDPRAISV----LAKWQNSYSIKVVLQELRRLMMS 143

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 71.2 bits (175), Expect = 8e-16
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 18/111 (16%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP- 67
           ++P  ++        ++L WH  L   +  P+    +  +I FPPEYP+KPP I   T  
Sbjct: 18  KKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI 76

Query: 68  -------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                  NG+      +CL +     E+W P      +L  L   +   + 
Sbjct: 77  YHPNVDENGQ------ICLPI--ISSENWKPCTKTCQVLEALNVLVNRPNI 119

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 70.4 bits (173), Expect = 8e-16
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 20/110 (18%)

Query: 11  EPVSHVVARPSPND---ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP 67
                     + +D   + +W+  + G   +      Y   I   P YP  PP +  I+ 
Sbjct: 22  FGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81

Query: 68  ---------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                     G       +           W   +++ ++L  L   M  
Sbjct: 82  INLPCVNPTTGE------VQTDFH--TLRDWKRAYTMETLLLDLRKEMAT 123

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 10  QEPVSHVVARPSPND----ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMI 65
           +      V+    +D    +  W  ++ G   T +    Y  KI+  P+YP  PP +  +
Sbjct: 49  KGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV 108

Query: 66  TP------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
           T       N          +S+       W   +S+  +L  L   MM 
Sbjct: 109 TKINMNGVNSSNGVVDPRAISVL----AKWQNSYSIKVVLQELRRLMMS 153

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP- 67
           +  + +         ++L W   L   +  P+  G +  +I FP EYP+KPP I   T  
Sbjct: 16  KCGMKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKI 74

Query: 68  -------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                   G+      +CL +     E+W P      ++  L++ + D  P
Sbjct: 75  YHPNIDEKGQ------VCLPV--ISAENWKPATKTDQVIQSLIALVNDPQP 117

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 19/103 (18%)

Query: 12  PVSHVVARPSPNDILEWHYVLEGSNGTPF--AGGYYYGKIKFPPEYPYKPPGILMITP-- 67
           P S  +     + I  W   ++    + +  AG  Y   + F  +YP++PP +  +TP  
Sbjct: 36  PHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVY 95

Query: 68  ------NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLS 104
                  G       +C  M +   + W P    S ++  +L 
Sbjct: 96  SPLVTGEGG------ICDRMVN---DFWTPDQHASDVIKLVLD 129

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 69.3 bits (170), Expect = 4e-15
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 8   HVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT- 66
           +V E VS  +       +  W   + G  GT F    Y   I     YP  PP +   T 
Sbjct: 37  NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96

Query: 67  -------PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                    GR      +  +      ++WN  +++ +IL  L   M+ 
Sbjct: 97  IEMSCVDNCGR------VIKNNLHI-LKNWNRNYTIETILISLRQEMLS 138

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 69.4 bits (170), Expect = 6e-15
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 10  QEPVSHVVARPSPNDILEWH----YVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMI 65
             P   +    SP+           V+   +   +  G     + F   YP +PP ++ +
Sbjct: 43  LPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCL 102

Query: 66  T----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                PN     +  +CL   +   E W+P   + SI+TGLL   ++ +P
Sbjct: 103 KKIFHPN--IDLKGNVCL---NILREDWSPALDLQSIITGLLFLFLEPNP 147

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 69.3 bits (170), Expect = 6e-15
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 20  PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQK 75
                + E+     G  GTP+ GG +  ++  P +YP+K P I  +     PN    +  
Sbjct: 45  TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASG- 103

Query: 76  KLCLSMSDFHPESWNPMWSVSSILTGLLSFMM 107
            +CL   D   ++W  ++ +++I    L  ++
Sbjct: 104 TVCL---DVINQTWTALYDLTNIFESFLPQLL 132

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 26/167 (15%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
           +   S     PS + + E+    +G  GTP+  G +   ++ P +YP+K P I       
Sbjct: 23  RLCNSTRKVYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRIL 81

Query: 67  -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDT----SPTTGSVNTTTE 121
            PN    +   +CL   D   ++W PM+ + +I    L  ++       P          
Sbjct: 82  HPNVDERS-GSVCL---DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQA----- 132

Query: 122 EKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPE 168
                  A L  +     F  L  E+V  +   Q A + + E   P 
Sbjct: 133 -------AHL-LHADRVGFDALLREHVSTHATPQKALESIPEAYRPH 171

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 20  PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQK 75
             P+D+L +  V+   +   +  G +    K    YP+ PP +   T    PN     + 
Sbjct: 29  SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN--IDLEG 85

Query: 76  KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            +CL   +   E W P+ +++SI+ GL    ++ +P
Sbjct: 86  NVCL---NILREDWKPVLTINSIIYGLQYLFLEPNP 118

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 67.7 bits (165), Expect = 3e-14
 Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 17/116 (14%)

Query: 11  EPVSHVVARPSPNDILEWHYVLEGSN-GTPFAGG-----------YYYGKIKFPPEYPYK 58
                       + + +WH  L+  +  +P               Y      F   +P+ 
Sbjct: 45  YKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD 104

Query: 59  PPGILMITP---NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
           PP + ++ P    G  +    LC+ +     + W+  +S+ S++  + + ++    
Sbjct: 105 PPFVRVVLPVLSGGYVLGGGALCMEL--LTKQGWSSAYSIESVIMQINATLVKGKA 158

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 66.2 bits (162), Expect = 8e-14
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 20  PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQK 75
             P+D+L +  V+   +   +  G +    K    YP+ PP +   T    PN     + 
Sbjct: 49  SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN--IDLEG 105

Query: 76  KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            + L   +   E W P+ +++SI+ GL    ++ +P
Sbjct: 106 NVAL---NILREDWKPVLTINSIIYGLQYLFLEPNP 138

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 16  VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG---RFM 72
           V  R     +     ++ G   TP+A G +   + FP +YP  PP + + T  G   RF 
Sbjct: 100 VFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159

Query: 73  ----TQKKLCLSM----SDFHPESWNP-MWSVSSILTGLLSFMMDTSP 111
                  K+CLS+         E WNP   S   +L  + S ++   P
Sbjct: 160 PNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	99.98
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	99.97
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.97
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.97
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.97
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	99.97
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.97
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.96
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.96
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.96
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.78
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.63
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.37
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.29
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	91.98
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	89.83
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	89.8
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	89.03
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	84.36
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	83.68
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	81.51
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	81.46

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=3.9e-40  Score=265.83  Aligned_cols=139  Identities=19%  Similarity=0.512  Sum_probs=129.9

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.||  |+||+.+|+||++
T Consensus         8 kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~   87 (149)
T 2r0j_A            8 KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLD   87 (149)
T ss_dssp             HHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEech
Confidence            45567788999999999999999999999999999999999999999999999999999999997  6778999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ  154 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~  154 (228)
                      +|+   ++|+|+++|.+||.+|++||.+|+++++ ++.++|+         +|++|++.|.++||+|+++||..
T Consensus        88 iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           88 ILK---DKWSPALQIRTVLLSIQALLSSPEPDDP-LDSKVAE---------HFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             GGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSC-SSCHHHH---------HHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             hcC---CCCCCCCcHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHHHHHHHccC
Confidence            998   8999999999999999999999999998 7777765         89999999999999999999863

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=5.6e-40  Score=265.45  Aligned_cols=138  Identities=22%  Similarity=0.566  Sum_probs=129.5

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.||  |+||+.+|+||++
T Consensus        11 kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~   90 (151)
T 4gpr_A           11 KELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLD   90 (151)
T ss_dssp             HHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEEcc
Confidence            45567888999999999999999999999999999999999999999999999999999999997  6779999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      +|+   ++|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||+|+++||.
T Consensus        91 iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~d~~~f~~~ar~~~~~ya~  150 (151)
T 4gpr_A           91 ILK---DQWSPALTLSRVLLSISSLLTDPNPSDP-LDPEVAN---------VLRANKKQFEDTAREWTRMYAR  150 (151)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHHHCCCTTSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccc---CCCCCCCcHHHHHHHHHHHhcCCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHHHHHHhcC
Confidence            998   8999999999999999999999999998 7777665         8999999999999999999985

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.1e-40  Score=267.81  Aligned_cols=139  Identities=19%  Similarity=0.442  Sum_probs=128.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        12 kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~   91 (154)
T 2c2v_B           12 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLD   91 (154)
T ss_dssp             HHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCH
T ss_pred             HHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEEch
Confidence            34556788999999999999999999999999999999999999999999999999999999996  6778999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ  154 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~  154 (228)
                      +|+   ++|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||+||++||..
T Consensus        92 iL~---~~W~p~~~i~~vl~~i~~ll~~pn~~~p-~n~~aa~---------~~~~d~~~f~~~ar~~~~~~a~~  152 (154)
T 2c2v_B           92 ILK---DKWSPALQIRTVLLSIQALLSAPNPDDP-LANDVAE---------QWKTNEAQAIETARAWTRLYAMN  152 (154)
T ss_dssp             HHH---TSCCTTCCHHHHHHHHHHHTTSCCCCCC---CHHHH---------HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             hcc---CCCCCCCcHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhcCC
Confidence            997   8999999999999999999999999998 7777775         89999999999999999999864

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=9e-40  Score=268.24  Aligned_cols=137  Identities=23%  Similarity=0.582  Sum_probs=128.1

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.++++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|.||++
T Consensus        28 kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~  107 (166)
T 2ayv_A           28 KELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLD  107 (166)
T ss_dssp             HHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEcc
Confidence            34556788999999999999999999999999999999999999999999999999999999996  6778999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                      +|+   ++|+|+++|.+||.+|++||.+|+++++ ++.++|+         +|++|++.|.++||+|+++||
T Consensus       108 iL~---~~WsP~~ti~~vL~sI~sll~~pn~~~P-ln~~aa~---------l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A          108 ILK---DQWSPALTISKVLLSISSLLTDPNPDDP-LVPEIAH---------LYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccc---ccCCCCCcHHHHHHHHHHHHhCCCCCch-hhHHHHH---------HHHHCHHHHHHHHHHHHHHhC
Confidence            998   8999999999999999999999999998 6776665         899999999999999999996

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-39  Score=268.50  Aligned_cols=142  Identities=25%  Similarity=0.518  Sum_probs=130.9

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        11 kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~ICl~   90 (169)
T 1ayz_A           11 RDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLD   90 (169)
T ss_dssp             HHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEeeh
Confidence            34556788999999999999999999999999999999999999999999999999999999996  6778999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLA  157 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~  157 (228)
                      +|+   +.|+|+++|.+||.+|++||.+|++++| ++.++|+         +|++|++.|.++||+||++|+.....
T Consensus        91 iL~---~~WsP~~~i~~vL~si~~ll~~Pn~~~P-~n~~aa~---------~~~~d~~~y~~~~r~~~~~~a~~~~~  154 (169)
T 1ayz_A           91 ILQ---NRWTPTYDVASILTSIQSLFNDPNPASP-ANVEAAT---------LFKDHKSQYVKRVKETVEKSWEDDMD  154 (169)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHHTCCCCSSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhc---cCCCCcCcHHHHHHHHHHHHhCCCCCcH-HHHHHHH---------HHHHCHHHHHHHHHHHHHHHcCCCcc
Confidence            997   8999999999999999999999999998 6666654         89999999999999999999986543

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.3e-40  Score=267.48  Aligned_cols=137  Identities=16%  Similarity=0.369  Sum_probs=128.1

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.++++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|+||++
T Consensus        20 kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~   99 (158)
T 1zdn_A           20 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVN   99 (158)
T ss_dssp             HHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHH
T ss_pred             HHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEehh
Confidence            34556788999999999999999999999999999999999999999999999999999999996  6778999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                      +|+   ++|+|+++|.+||.+|+++|.+|+|+++ +|.++|+         +|.+|++.|.++||+||++||
T Consensus       100 iL~---~~W~p~~~i~~vL~~i~~ll~~pn~~~p-~n~~aa~---------~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A          100 VLK---RDWTAELGIRHVLLTIKCLLIHPNPESA-LNEEAGR---------LLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             HHT---TTCCTTCCHHHHHHHHHHHHHSCCGGGC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHC
T ss_pred             hcC---CCCCCCCcHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhC
Confidence            997   8999999999999999999999999998 6766665         899999999999999999996

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-39  Score=268.28  Aligned_cols=143  Identities=22%  Similarity=0.488  Sum_probs=131.7

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.++++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|.||++
T Consensus        11 kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~   90 (169)
T 1yh2_A           11 RELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLD   90 (169)
T ss_dssp             HHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEecc
Confidence            45556788999999999999999999999999999999999999999999999999999999997  6778999999999


Q ss_pred             CCCCCC-CCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           81 MSDFHP-ESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        81 ~L~~~~-~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      +|++++ ++|+|+++|.+||.+|++||.+|+++++ ++.++|+         +|.+|++.|.++||+|+++||...
T Consensus        91 iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~y~~~~r~~~~~~a~~~  156 (169)
T 1yh2_A           91 VLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDP-LMADISS---------EFKYNKPAFLKNARQWTEKHARQK  156 (169)
T ss_dssp             GGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred             cccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcch-HhHHHHH---------HHHhhHHHHHHHHHHHHHHHcccc
Confidence            998654 7999999999999999999999999998 6766665         899999999999999999999743

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=1.1e-39  Score=263.42  Aligned_cols=138  Identities=22%  Similarity=0.569  Sum_probs=128.7

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||++
T Consensus        11 kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~   90 (150)
T 1z2u_A           11 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLD   90 (150)
T ss_dssp             HHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEeec
Confidence            44556788999999999999999999999999999999999999999999999999999999997  7889999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      +|+   ++|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||+|+++||.
T Consensus        91 iL~---~~W~p~~~i~~vl~~i~~ll~~pn~~~p-~n~~aa~---------~~~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A           91 ILR---SQWSPALTISKVLLSICSLLCDPNPDDP-LVPEIAR---------IYKTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccc---CCCCCCCCHHHHHHHHHHHhhCCCCCCc-cCHHHHH---------HHHHHHHHHHHHHHHHHHHHhC
Confidence            998   8999999999999999999999999998 6666664         8999999999999999999973

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=1.1e-39  Score=264.91  Aligned_cols=140  Identities=16%  Similarity=0.440  Sum_probs=130.2

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.++++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        12 kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~   91 (155)
T 1jat_A           12 KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLD   91 (155)
T ss_dssp             HHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCG
T ss_pred             HHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEEch
Confidence            34556788999999999999999999999999999999999999999999999999999999996  6778899999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      +|+   ++|+|+++|.+||.+|++||.+|+++++ ++.++|+         +|++|++.|.++||+|+++||...
T Consensus        92 iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~f~~~~r~~~~~~a~~~  153 (155)
T 1jat_A           92 VLK---TNWSPALQIRTVLLSIQALLASPNPNDP-LANDVAE---------DWIKNEQGAKAKAREWTKLYAKKK  153 (155)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHHHSCCTTST-TCCTTHH---------HHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred             hhc---cCCCCCCCHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhcccC
Confidence            997   8999999999999999999999999998 7777775         899999999999999999999643

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1.9e-39  Score=262.49  Aligned_cols=139  Identities=23%  Similarity=0.548  Sum_probs=128.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      .+.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        11 ~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~   90 (152)
T 2aak_A           11 RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLD   90 (152)
T ss_dssp             HHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEech
Confidence            34556788999999999999999999999999999999999999999999999999999999996  6778999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ  154 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~  154 (228)
                      +|+   ++|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||+||++|+.+
T Consensus        91 iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           91 ILQ---NQWSPIYDVAAILTSIQSLLCDPNPNSP-ANSEAAR---------MYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             GGT---TSCCTTCCHHHHHHHHHHHHTSCCTTSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             hhc---CCCCCCCcHHHHHHHHHHHHhCCCCCcc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHHccc
Confidence            997   8999999999999999999999999998 6666654         89999999999999999999864

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.8e-39  Score=266.22  Aligned_cols=138  Identities=22%  Similarity=0.590  Sum_probs=128.6

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|.||++
T Consensus        26 kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~ICl~  105 (165)
T 2c4o_A           26 KELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLD  105 (165)
T ss_dssp             HHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCeEeeh
Confidence            34556788999999999999999999999999999999999999999999999999999999997  7789999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      +|+   ++|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|.+|++.|.++||+|+++||.
T Consensus       106 iL~---~~W~P~~ti~~vL~si~~ll~~pn~~~P-~n~~aa~---------~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A          106 ILR---SQWSPALTISKVLLSICSLLCDPNPDDP-LVPEIAR---------IYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHTTC
T ss_pred             hhc---CCCCCcCcHHHHHHHHHHHHhCCCCCcc-ccHHHHH---------HHHHHHHHHHHHHHHHHHHHhC
Confidence            998   8999999999999999999999999998 6666665         8999999999999999999973

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.9e-39  Score=269.89  Aligned_cols=160  Identities=53%  Similarity=1.009  Sum_probs=133.7

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeEeccCC
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMS   82 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~iCl~~L   82 (228)
                      .+.-.+++++++||++.++++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|||++++.+|+||+++|
T Consensus        21 kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~~~~G~ICL~iL  100 (187)
T 2f4w_A           21 QDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSIT  100 (187)
T ss_dssp             HHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTSCBC----
T ss_pred             HHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCceeccCCeEeeecc
Confidence            45566788999999999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             CCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhhhhhhc
Q 027085           83 DFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVS  162 (228)
Q Consensus        83 ~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~~~~~~  162 (228)
                      ++++++|+|+++|.+||.+|++||.+|+|+.++......+++++|..+..|++....|.+.+++++++|..+.....+.+
T Consensus       101 ~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~~~~~f~~~fp~~~~~~~~~~~~~~~~~  180 (187)
T 2f4w_A          101 DFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELS  180 (187)
T ss_dssp             ------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHC----------
T ss_pred             ccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHHHhhcCchHHHhhHHHHHHHHHHHHHhhccc
Confidence            76679999999999999999999999999999888888899999999999999999999999999999988765544433

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=4.2e-39  Score=261.65  Aligned_cols=138  Identities=21%  Similarity=0.468  Sum_probs=127.5

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.++++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|.||++
T Consensus        16 kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~   95 (156)
T 2e2c_A           16 QELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLD   95 (156)
T ss_dssp             HHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEECc
Confidence            34556778899999999999999999999999999999999999999999999999999999997  6779999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ  154 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~  154 (228)
                      +|+   ++|+|+++|.+||.+|++||.+|+++++ +|.++|+         +| +|++.|.++||+||++|+..
T Consensus        96 iL~---~~W~p~~~i~~vL~si~~ll~~pn~~~p-~n~~aa~---------~~-~d~~~y~~~~~~~~~~~~~~  155 (156)
T 2e2c_A           96 ILK---ENWTASYDVRTILLSLQSLLGEPNNASP-LNAQAAD---------MW-SNQTEYKKVLHEKYKTAQSD  155 (156)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHTTSCCCSSC-SCHHHHH---------HT-TCHHHHHHHHHHHHHHHHHC
T ss_pred             ccc---ccCCCCCcHHHHHHHHHHHHhCCCCCCH-HHHHHHH---------Hh-cCHHHHHHHHHHHHHHhccC
Confidence            997   8999999999999999999999999998 6766665         88 89999999999999999863

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=9.1e-40  Score=263.61  Aligned_cols=138  Identities=22%  Similarity=0.454  Sum_probs=127.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecC-CCeEe
Q 027085            3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT-QKKLC   78 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~-~G~iC   78 (228)
                      ++.-.+++++++||++.+.++ |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |+||+. +|.||
T Consensus         8 ~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iC   87 (149)
T 1fxt_A            8 KEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAIC   87 (149)
T ss_dssp             HHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBC
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEe
Confidence            455567889999999999887 99999999999999999999999999999999999999999995  666887 99999


Q ss_pred             ccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           79 LSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        79 l~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      +++|+   ++|+|+++|.+||.+|++||.+|+++++ ++.++|+         +|++|++.|.++||+|+++||.
T Consensus        88 l~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A           88 LDILK---NAWSPVITLKSALISLQALLQSPEPNDP-QDAEVAQ---------HYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             CHHHH---TSCCTTCCHHHHHHHHHHHHHSCCSSSC-SSHHHHH---------HHHHCSSHHHHHHHHHHHHHCC
T ss_pred             CCcCC---CCCCCCCcHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhcC
Confidence            99997   8999999999999999999999999998 6766665         8999999999999999999973

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=9.1e-39  Score=261.46  Aligned_cols=141  Identities=23%  Similarity=0.457  Sum_probs=128.6

Q ss_pred             ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.+.++ |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.||  |+||+.+|+||+
T Consensus        10 kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~iCl   89 (164)
T 3h8k_A           10 AEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCI   89 (164)
T ss_dssp             HHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBBCC
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcEee
Confidence            455578889999999998765 99999999999999999999999999999999999999999996  777899999999


Q ss_pred             cCCCC----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 027085           80 SMSDF----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVE  149 (228)
Q Consensus        80 ~~L~~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~  149 (228)
                      ++|+.          +.++|+|+++|.+||.+|+++|.+|+++++ +|.++|+         +|++|++.|.++||+|++
T Consensus        90 ~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p-~n~~aa~---------~~~~~~~~f~~~~~~~~~  159 (164)
T 3h8k_A           90 SILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG-ANVDASK---------MWRDDREQFYKIAKQIVQ  159 (164)
T ss_dssp             GGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSC-SSHHHHH---------HHHHCHHHHHHHHHHHHH
T ss_pred             ecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHH
Confidence            99962          237999999999999999999999999998 6777665         899999999999999999


Q ss_pred             HHHh
Q 027085          150 KYNE  153 (228)
Q Consensus       150 k~a~  153 (228)
                      +++.
T Consensus       160 ~s~~  163 (164)
T 3h8k_A          160 KSLG  163 (164)
T ss_dssp             HHHT
T ss_pred             Hhhc
Confidence            9874

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9.3e-39  Score=261.71  Aligned_cols=141  Identities=23%  Similarity=0.507  Sum_probs=127.4

Q ss_pred             ccchhhhhCCCCCEEEeeCC-CCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSP-NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~-~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.+.+ +|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|+||+
T Consensus        11 kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl   90 (165)
T 2ucz_A           11 KELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCI   90 (165)
T ss_dssp             HHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCC
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcEee
Confidence            34456788999999999975 799999999999999999999999999999999999999999996  677899999999


Q ss_pred             cCCCC----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 027085           80 SMSDF----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVE  149 (228)
Q Consensus        80 ~~L~~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~  149 (228)
                      ++|+.          +.+.|+|+++|.+||.+|++||.+|+++++ +|.++|+         +|++|++.|.++||+||+
T Consensus        91 ~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p-~n~~aa~---------~~~~~~~~y~~~v~~~~~  160 (165)
T 2ucz_A           91 SILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESG-ANIDACI---------LWRDNRPEFERQVKLSIL  160 (165)
T ss_dssp             GGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGC-CCHHHHH---------HHHTTHHHHHHHHHHHHH
T ss_pred             hhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHHHHH
Confidence            99931          148999999999999999999999999998 6666665         899999999999999999


Q ss_pred             HHHh
Q 027085          150 KYNE  153 (228)
Q Consensus       150 k~a~  153 (228)
                      +|++
T Consensus       161 ~~~~  164 (165)
T 2ucz_A          161 KSLG  164 (165)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9875

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.2e-38  Score=267.48  Aligned_cols=138  Identities=22%  Similarity=0.553  Sum_probs=128.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        55 kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~  134 (194)
T 3bzh_A           55 KELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLD  134 (194)
T ss_dssp             HHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCceech
Confidence            34556788999999999999999999999999999999999999999999999999999999996  6778999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      +|+   ++|+|+++|.+||.+|++||.+|+|+++ ++.++|+         +|.+|++.|.++||+|+++||.
T Consensus       135 iL~---~~WsP~~ti~~vL~sI~~ll~~pnp~~P-ln~~aa~---------l~~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          135 ILK---DNWSPALTISKVLLSICSLLTDCNPADP-LVGSIAT---------QYMTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHCC
T ss_pred             hhh---ccCCCcCcHHHHHHHHHHHHhCCCCccc-hhHHHHH---------HHHHCHHHHHHHHHHHHHHhhC
Confidence            997   8999999999999999999999999998 6666665         8999999999999999999973

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=9.1e-39  Score=261.56  Aligned_cols=140  Identities=21%  Similarity=0.437  Sum_probs=127.5

Q ss_pred             ccchhhhhCCCCCEEEeeCCC-----CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCC
Q 027085            3 NGCFYHVQEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQK   75 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~-----dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G   75 (228)
                      .+.-.+++++++||++.|.++     |+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|
T Consensus        17 kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G   96 (163)
T 3rcz_B           17 EERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSG   96 (163)
T ss_dssp             HHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTS
T ss_pred             HHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCC
Confidence            355678899999999999766     99999999999999999999999999999999999999999996  67789999


Q ss_pred             eEeccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           76 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        76 ~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      .||+++|+ ..+.|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||+|+++||.
T Consensus        97 ~iCl~iL~-~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p-~n~~aa~---------~~~~d~~~y~~~~r~~~~~ya~  163 (163)
T 3rcz_B           97 TVCLSILN-EEEGWKPAITIKQILLGIQDLLDDPNIASP-AQTEAYT---------MFKKDKVEYEKRVRAQARENAP  163 (163)
T ss_dssp             BBCCGGGC-TTTTCCTTCCHHHHHHHHHHHHTSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHTCC
T ss_pred             cEeccccC-CCCCcCCcCcHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHHHhCc
Confidence            99999997 224699999999999999999999999998 6766665         8999999999999999999973

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=4.2e-39  Score=274.30  Aligned_cols=164  Identities=19%  Similarity=0.439  Sum_probs=129.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G~iCl   79 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+ .+|.||+
T Consensus        30 kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL  109 (216)
T 2pwq_A           30 KELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICL  109 (216)
T ss_dssp             HHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCC
T ss_pred             HHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEc
Confidence            34556788999999999999999999999999999999999999999999999999999999996  56687 5899999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhhh-
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAE-  158 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~~-  158 (228)
                      ++|+   +.|+|+++|.+||++|++||.+|+|++| ++.++|.         +|++|++.|.++||+|+++||...... 
T Consensus       110 ~iL~---~~WsP~~ti~~VL~sI~sLL~~Pnp~dP-ln~eaa~---------~~~~d~~~f~~~ar~~t~~ya~~~~~~~  176 (216)
T 2pwq_A          110 DVLK---NEWSPALTIRTALLSIQALLSDPQPDDP-QDAEVAK---------MYKENHALFVKTASVWTKTFATGPKEEP  176 (216)
T ss_dssp             HHHH---HHCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHSCCC----
T ss_pred             hhhc---ccCCCCCcHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhcCCCcccc
Confidence            9997   8899999999999999999999999998 6666664         899999999999999999999865432 


Q ss_pred             -hhhcccCCCCCCCCCCCCccc
Q 027085          159 -QRVSEQLSPESPNEENSRPKV  179 (228)
Q Consensus       159 -~~~~~~~~~~~~~~~~~~~~~  179 (228)
                       ++.-.+-..++..+.+....+
T Consensus       177 ~~~~v~~~~~mgf~~~~~~~al  198 (216)
T 2pwq_A          177 REVIIKKITEMGFSEDQAKNAL  198 (216)
T ss_dssp             ----------------------
T ss_pred             hhhHHHHHHHcCCCHHHHHHHH
Confidence             334444444554444444433

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=2.3e-38  Score=258.03  Aligned_cols=137  Identities=18%  Similarity=0.404  Sum_probs=124.8

Q ss_pred             cchhhhhC---CCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCCeE
Q 027085            4 GCFYHVQE---PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQKKL   77 (228)
Q Consensus         4 ~~~~l~~~---p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G~i   77 (228)
                      +.-.++++   +++||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+  |+||+ .+|.|
T Consensus        16 El~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~i   95 (159)
T 2bep_A           16 EFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI   95 (159)
T ss_dssp             HHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBB
T ss_pred             HHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEE
Confidence            33445553   68899999999999999999999999999999999999999999999999999996  67788 48999


Q ss_pred             eccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           78 CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        78 Cl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      |+++|+   ++|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||+|+++||.
T Consensus        96 Cl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~f~~~a~~~~~~~a~  158 (159)
T 2bep_A           96 CLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDP-QDAVVAN---------QYKQNPEMFKQTARLWAHVYAG  158 (159)
T ss_dssp             CCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHSC
T ss_pred             eChhhh---ccCCCCCcHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhhc
Confidence            999998   8999999999999999999999999998 6666665         8999999999999999999985

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-38  Score=266.19  Aligned_cols=137  Identities=23%  Similarity=0.476  Sum_probs=123.4

Q ss_pred             cchhhhhCCC-------------CCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--C
Q 027085            4 GCFYHVQEPV-------------SHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--N   68 (228)
Q Consensus         4 ~~~~l~~~p~-------------~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n   68 (228)
                      +.-.++++++             +||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |
T Consensus        40 El~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  119 (193)
T 2f4z_A           40 ELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWH  119 (193)
T ss_dssp             HHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             HHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCcc
Confidence            4445677776             799999999999999999999999999999999999999999999999999995  5


Q ss_pred             ceec-CCCeEeccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHH
Q 027085           69 GRFM-TQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEY  147 (228)
Q Consensus        69 ~~v~-~~G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~  147 (228)
                      +||+ .+|.||+++|+   ++|+|+++|.+||++|++||.+|+|+++ ++.++|+         +|++|++.|.++||+|
T Consensus       120 PNI~~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~pnp~~P-~n~~aa~---------l~~~d~~~f~~~ar~~  186 (193)
T 2f4z_A          120 PNISSQTGAICLDILK---HEWSPALTIRTALLSIQAMLADPVPTDP-QDAEVAK---------MMIENHPLFVQTAKLW  186 (193)
T ss_dssp             TTBCTTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHH
T ss_pred             CCCcCCCCEEECcccc---ccCCCCCCHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHH
Confidence            6677 58999999998   8999999999999999999999999998 6766665         8999999999999999


Q ss_pred             HHHHHh
Q 027085          148 VEKYNE  153 (228)
Q Consensus       148 v~k~a~  153 (228)
                      +++||.
T Consensus       187 t~~ya~  192 (193)
T 2f4z_A          187 TETFAK  192 (193)
T ss_dssp             HHHHCC
T ss_pred             HHHHcc
Confidence            999985

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=2.5e-38  Score=257.32  Aligned_cols=140  Identities=21%  Similarity=0.432  Sum_probs=126.0

Q ss_pred             ccchhhhhCCCCCEEEeeCC-----CCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCC
Q 027085            3 NGCFYHVQEPVSHVVARPSP-----NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQK   75 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~-----~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G   75 (228)
                      ++.-.+++++++||++.|.+     +|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |+||+.+|
T Consensus        11 kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   90 (157)
T 2gjd_A           11 EERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSG   90 (157)
T ss_dssp             HHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTS
T ss_pred             HHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCC
Confidence            34556788999999999864     489999999999999999999999999999999999999999996  67788999


Q ss_pred             eEeccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           76 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        76 ~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      .||+++|+. .++|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||+|+++||.
T Consensus        91 ~iCl~iL~~-~~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~y~~~~~~~~~~~a~  157 (157)
T 2gjd_A           91 TICLSILNE-DQDWRPAITLKQIVLGVQDLLDSPNPNSP-AQEPAWR---------SFSRNKAEYDKKVLLQAKQYSK  157 (157)
T ss_dssp             BBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHTSCCTTCC-CCHHHHH---------HHHHCHHHHHHHHHHHHHHTBC
T ss_pred             cEeeecccC-CCCCCCCCcHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHHHhcC
Confidence            999999972 13899999999999999999999999998 6666664         8999999999999999999973

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2e-38  Score=263.17  Aligned_cols=138  Identities=24%  Similarity=0.453  Sum_probs=126.8

Q ss_pred             cchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccC
Q 027085            4 GCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM   81 (228)
Q Consensus         4 ~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~   81 (228)
                      +.-.+++++++||++.++++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|+||+++
T Consensus        38 El~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~i  117 (179)
T 1i7k_A           38 ELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDI  117 (179)
T ss_dssp             HHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGG
T ss_pred             HHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEEccc
Confidence            4456778899999999999999999999999999999999999999999999999999999997  67789999999999


Q ss_pred             CCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           82 SDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        82 L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      |+   +.|+|+++|.+||.+|++||.+|+++++ ++.++|+         +| +|++.|.++|++++++++..+
T Consensus       118 L~---~~WsP~~ti~~vL~sI~sll~~Pn~~~P-ln~~aa~---------l~-~d~~~f~~~v~~~v~~~~~~~  177 (179)
T 1i7k_A          118 LK---EKWSALYDVRTILLSIQSLLGEPNIDSP-LNTHAAE---------LW-KNPTAFKKYLQETYSKQVTSQ  177 (179)
T ss_dssp             GT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HT-TSHHHHHHHHHHHHHTTCC--
T ss_pred             Cc---CcCCCCCCHHHHHHHHHHHHhCCCCcch-hhHHHHH---------Hh-hCHHHHHHHHHHHHHHHhccc
Confidence            97   8999999999999999999999999998 6776665         89 999999999999999988654

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=4.2e-38  Score=255.43  Aligned_cols=140  Identities=21%  Similarity=0.408  Sum_probs=128.0

Q ss_pred             ccchhhhhCCCCCEEE-eeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVA-RPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v-~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++ .++++|+++|+++|. |+||||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||+
T Consensus        11 kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl   89 (155)
T 1wzv_A           11 KELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICL   89 (155)
T ss_dssp             HHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCC
T ss_pred             HHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeEee
Confidence            3455678899999999 889999999999999 999999999999999999999999999999996  677899999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      ++|+  .++|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||+|+++||.+.
T Consensus        90 ~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~y~~~~r~~~~~~a~~~  153 (155)
T 1wzv_A           90 PIIS--SENWKPCTKTCQVLEALNVLVNRPNIREP-LRMDLAD---------LLTQNPELFRKNAEEFTLRFGVDR  153 (155)
T ss_dssp             GGGC--TTTCCTTCCHHHHHHHHHHHHHSCCSSSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred             cCCC--ccCCCCCCcHHHHHHHHHHHHhCCCCCch-HHHHHHH---------HHHHHHHHHHHHHHHHHHHhcccC
Confidence            9993  28999999999999999999999999998 6666654         899999999999999999999743

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=6.1e-38  Score=256.05  Aligned_cols=140  Identities=19%  Similarity=0.423  Sum_probs=126.5

Q ss_pred             ccchhhhhCCCCCEEEeeCC-----CCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCC
Q 027085            3 NGCFYHVQEPVSHVVARPSP-----NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQK   75 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~-----~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G   75 (228)
                      ++.-.+++++++||++.|..     +|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |+||+.+|
T Consensus        14 kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   93 (161)
T 2grr_A           14 QERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG   93 (161)
T ss_dssp             HHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTS
T ss_pred             HHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCC
Confidence            34556788999999998863     689999999999999999999999999999999999999999996  67789999


Q ss_pred             eEeccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           76 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        76 ~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      .||+++|+. .++|+|+++|.+||.+|+++|.+|+++++ ++.++|.         +|++|++.|.++||+||++||.
T Consensus        94 ~iCl~iL~~-~~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~y~~~~~~~~~~~a~  160 (161)
T 2grr_A           94 TVCLSILEE-DKDWRPAITIKQILLGIQELLNEPNIQSP-AQAEAYT---------IYCQNRVEYEKRVRAQAKKFAP  160 (161)
T ss_dssp             BBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHTCC
T ss_pred             eEeehhcCC-CCCcCCCCcHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHHHHhc
Confidence            999999972 24899999999999999999999999998 6666664         8999999999999999999985

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=1.4e-37  Score=262.34  Aligned_cols=163  Identities=16%  Similarity=0.345  Sum_probs=137.1

Q ss_pred             chhhhhC---CCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCCeEe
Q 027085            5 CFYHVQE---PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQKKLC   78 (228)
Q Consensus         5 ~~~l~~~---p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G~iC   78 (228)
                      .-.++++   ++.||++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |+||+ .+|.||
T Consensus        14 l~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iC   93 (201)
T 3k9o_A           14 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC   93 (201)
T ss_dssp             HHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBC
T ss_pred             HHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeee
Confidence            3445555   47899999999999999999999999999999999999999999999999999996  67788 489999


Q ss_pred             ccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhh-
Q 027085           79 LSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLA-  157 (228)
Q Consensus        79 l~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~-  157 (228)
                      +++|+   ++|+|+++|.+||.+|+++|.+|+|++| ++.++|+         +|++|++.|.++||+|+++||..... 
T Consensus        94 l~iL~---~~W~p~~~i~~vL~~i~~ll~~p~p~~p-~n~~aa~---------~~~~~~~~f~~~a~~~~~~~a~~~~~~  160 (201)
T 3k9o_A           94 LDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDP-QDAVVAN---------QYKQNPEMFKQTARLWAHVYAGAPVSS  160 (201)
T ss_dssp             CGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             Ccccc---cCCCCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhccccccc
Confidence            99997   8999999999999999999999999998 7777765         89999999999999999999976432 


Q ss_pred             --hhhhcccCCCCCCCCCCCCcccc
Q 027085          158 --EQRVSEQLSPESPNEENSRPKVE  180 (228)
Q Consensus       158 --~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                        -+..-++...++..+.+.+..+.
T Consensus       161 ~~~eekV~~l~~MGf~~~~a~~AL~  185 (201)
T 3k9o_A          161 PEYTKKIENLCAMGFDRNAVIVALS  185 (201)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHcCCCHHHHHHHHH
Confidence              13333444445555554444433

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=1.7e-37  Score=254.63  Aligned_cols=140  Identities=18%  Similarity=0.335  Sum_probs=126.2

Q ss_pred             ccchhhhhCCCCCEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.+ +++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||+
T Consensus        21 kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl   99 (167)
T 3fn1_B           21 KEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICL   99 (167)
T ss_dssp             HHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCBCC
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEEec
Confidence            455678889999999985 568899999999 8999999999999999999999999999999996  777899999999


Q ss_pred             cCCCCC---CCCCCCCcchHHHHHhhhccccC-CCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           80 SMSDFH---PESWNPMWSVSSILTGLLSFMMD-TSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        80 ~~L~~~---~~~W~p~~~i~~vL~~i~~ll~~-p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      ++|+.+   +++|+|+++|.+||.+|+++|.+ |+++++ +|.++|+         +|++|++.|.++||+||++||+
T Consensus       100 ~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p-~n~eaa~---------~~~~~~~~f~~~~r~~~~~~A~  167 (167)
T 3fn1_B          100 SLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDP-LNIEAAE---------HHLRDKEDFRNKVDDYIKRYAR  167 (167)
T ss_dssp             GGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHCC
T ss_pred             hhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcc-hhHHHHH---------HHHHCHHHHHHHHHHHHHHhcC
Confidence            999732   35899999999999999999999 699998 7777665         8999999999999999999974

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.3e-36  Score=252.95  Aligned_cols=144  Identities=22%  Similarity=0.452  Sum_probs=127.0

Q ss_pred             ccchhhhhCCCCCEEEe-eCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~-p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      .+.-.+++++++||++. ++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.||  |+||+.+|+||+
T Consensus        14 kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl   93 (183)
T 3rz3_A           14 LELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI   93 (183)
T ss_dssp             HHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBBCC
T ss_pred             HHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcEeh
Confidence            34556789999999999 688899999999999999999999999999999999999999999996  677899999999


Q ss_pred             cCCCC----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcc------ChHHHHHH
Q 027085           80 SMSDF----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNC------KNPAFRKL  143 (228)
Q Consensus        80 ~~L~~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~------~~~~f~~~  143 (228)
                      ++|+.          ..+.|+|+++|++||++|++||.+||++++ +|.+++.         +|++      |+++|.++
T Consensus        94 siL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p-~n~~aa~---------~~~~~~~~~~~~~~y~~~  163 (183)
T 3rz3_A           94 SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP-ANVDASV---------MYRKWKESKGKDREYTDI  163 (183)
T ss_dssp             TTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSC-SSHHHHH---------HHHHHHHTTTCCCHHHHH
T ss_pred             hhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHhcccccccHHHHHHH
Confidence            99952          127899999999999999999999999998 6666664         5655      78999999


Q ss_pred             HHHHHHHHHhhhh
Q 027085          144 FPEYVEKYNEQQL  156 (228)
Q Consensus       144 ar~~v~k~a~~~~  156 (228)
                      +|++|++++....
T Consensus       164 v~~~v~~s~~~~~  176 (183)
T 3rz3_A          164 IRKQVLGTKVDAE  176 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988653

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.1e-37  Score=265.35  Aligned_cols=139  Identities=22%  Similarity=0.453  Sum_probs=127.0

Q ss_pred             ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecC-CCeEe
Q 027085            3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT-QKKLC   78 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~-~G~iC   78 (228)
                      ++.-.+++++++||++.+.++ ++++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |+||+. +|.||
T Consensus         9 kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~IC   88 (215)
T 1tte_A            9 KEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAIC   88 (215)
T ss_dssp             HHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCC
T ss_pred             HHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEE
Confidence            345567889999999999776 56799999999999999999999999999999999999999996  677888 99999


Q ss_pred             ccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhh
Q 027085           79 LSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ  154 (228)
Q Consensus        79 l~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~  154 (228)
                      +++|+   +.|+|+++|.+||.+|++||.+|+|++| .+.++|.         +|++|++.|.++||+|+++||..
T Consensus        89 L~iL~---~~WsP~~ti~~VL~sI~sLL~~Pnp~~P-ln~eaa~---------~~~~d~~~f~~~ar~~t~~yA~~  151 (215)
T 1tte_A           89 LDILR---NAWSPVITLKSALISLQALLQSPEPNDP-QDAEVAQ---------HYLRDRESFNKTAALWTRLYASE  151 (215)
T ss_dssp             SSTTT---CCSCTTCCHHHHHHHHHHHHTSCCCSSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHSSCC
T ss_pred             CccCC---CCCCCcCcHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHHHhccC
Confidence            99998   8999999999999999999999999997 6666654         89999999999999999999974

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.5e-37  Score=253.54  Aligned_cols=136  Identities=23%  Similarity=0.439  Sum_probs=122.9

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Ccee-cCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRF-MTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v-~~~G~iCl   79 (228)
                      ++.-.+++++++||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+|| +.+|.||+
T Consensus        30 kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL  109 (169)
T 1yrv_A           30 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCI  109 (169)
T ss_dssp             HHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCC
T ss_pred             HHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEee
Confidence            34556788899999999999999999999999999999999999999999999999999999996  5667 89999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEK  150 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k  150 (228)
                      ++|+ ++++|+|+++|.+||.+|++||.+|+++++ +|.++|+         +|++|++.|.++ +++|++
T Consensus       110 ~iL~-~~~~WsP~~ti~~vL~sI~sll~~Pn~~~P-ln~eaa~---------l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A          110 DFLD-NPEKWNTNYTLSSILLALQVMLSNPVLENP-VNLEAAR---------ILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             HHHH-CGGGCCTTCCHHHHHHHHHHHHTSCCTTSC-SCHHHHH---------HHHSCHHHHHHH-HHHHC-
T ss_pred             hhhc-CCcCCCCcCCHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------HHHHCHHHHHHH-HHHhhC
Confidence            9996 347999999999999999999999999998 6766665         899999999998 888864

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=3.9e-37  Score=249.45  Aligned_cols=140  Identities=21%  Similarity=0.466  Sum_probs=123.5

Q ss_pred             ccchhhhhCCCCCEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++|+++.+ +++|+++|+++|. |+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|.||+
T Consensus         9 kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl   87 (154)
T 1c4z_D            9 KELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCL   87 (154)
T ss_dssp             HHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCC
T ss_pred             HHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEEEC
Confidence            344567888999998654 7889999999998 999999999999999999999999999999997  677899999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      ++|+  +++|+|+++|.+||.+|++||.+|+++++ ++.++|+         +|++|++.|.++||+|+++||...
T Consensus        88 ~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p-~n~~aa~---------~~~~~~~~f~~~~~~~~~~~a~~~  151 (154)
T 1c4z_D           88 PVIS--AENWKPATKTDQVIQSLIALVNDPQPEHP-LRADLAE---------EYSKDRKKFCKNAEEFTKKYGEKR  151 (154)
T ss_dssp             TTTS--SSSCCTTCCHHHHHHHHHHHHHSCCCSSC-SCHHHHH---------HHHTCSSTTHHHHHHHHTTC----
T ss_pred             CCCC--CCCCCCCCcHHHHHHHHHHHHcCCCCCch-hhHHHHH---------HHHHhHHHHHHHHHHHHHHhcccC
Confidence            9995  37999999999999999999999999997 6666664         899999999999999999999754

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=1.3e-36  Score=264.42  Aligned_cols=139  Identities=17%  Similarity=0.397  Sum_probs=126.7

Q ss_pred             cchhhhhC---CCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCCeE
Q 027085            4 GCFYHVQE---PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQKKL   77 (228)
Q Consensus         4 ~~~~l~~~---p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G~i   77 (228)
                      +.-.++++   ++.||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+ .+|.|
T Consensus        65 El~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~I  144 (253)
T 3e46_A           65 EFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI  144 (253)
T ss_dssp             HHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBB
T ss_pred             HHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCee
Confidence            33445555   47899999999999999999999999999999999999999999999999999996  66688 48999


Q ss_pred             eccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           78 CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        78 Cl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      |+++|+   ++|+|+++|.+||.+|+++|.+|+|++| +|.++|+         +|++|++.|.++||+|+++||...
T Consensus       145 CL~iL~---~~WsP~~ti~~vL~sI~~ll~~pnp~~P-ln~eaa~---------l~~~d~~~f~~~ar~~t~~yA~~~  209 (253)
T 3e46_A          145 CLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDP-QDAVVAN---------QYKQNPEMFKQTARLWAHVYAGAP  209 (253)
T ss_dssp             CCGGGT---TCCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHHCCS
T ss_pred             eccccc---CCCCCCCCHHHHHHHHHHHhcCCCCCCh-hhHHHHH---------HHHHCHHHHHHHHHHHHHHhcccc
Confidence            999997   9999999999999999999999999998 7777665         899999999999999999999764

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=2.9e-37  Score=249.90  Aligned_cols=129  Identities=18%  Similarity=0.473  Sum_probs=119.2

Q ss_pred             CCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCCeEeccCCCCCCCCCC
Q 027085           14 SHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQKKLCLSMSDFHPESWN   90 (228)
Q Consensus        14 ~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G~iCl~~L~~~~~~W~   90 (228)
                      .|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |+||+ .+|.||+++|+   ++|+
T Consensus        17 ~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~---~~W~   93 (152)
T 2onu_A           17 AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN---QTWT   93 (152)
T ss_dssp             HTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHH---HHCC
T ss_pred             CCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEeccccc---ccCC
Confidence            378899999999999999999999999999999999999999999999999996  66788 48999999997   8999


Q ss_pred             CCcchHHHHHh-hhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           91 PMWSVSSILTG-LLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        91 p~~~i~~vL~~-i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      |+++|.+||.+ |++||.+|+++++ ++.++|+         +|.+|++.|.++||+|+++||...
T Consensus        94 p~~~i~~vl~~ii~~Ll~~Pn~~~P-~n~~aa~---------~~~~d~~~y~~~v~~~~~~~a~~~  149 (152)
T 2onu_A           94 PLYSLVNVFEVFLPQLLTYPNPSDP-LNSDAAS---------LLMKDKNIYEEKVKEYVKLYASKD  149 (152)
T ss_dssp             TTCCHHHHHHTHHHHHHHSCCCSSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHSCGG
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhccCc
Confidence            99999999999 6899999999998 6666664         899999999999999999999754

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=1.6e-36  Score=250.16  Aligned_cols=135  Identities=21%  Similarity=0.472  Sum_probs=97.9

Q ss_pred             ccchhhhhCCCCCEEEeeCC-CCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSP-NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~-~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.+.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.||  |+||+.+|+||+
T Consensus        24 kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~ICl  103 (172)
T 2awf_A           24 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCI  103 (172)
T ss_dssp             HHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCC
T ss_pred             HHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcEeh
Confidence            34556788999999999865 799999999999999999999999999999999999999999996  677899999999


Q ss_pred             cCCCC----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChH-HHHHHHHHH
Q 027085           80 SMSDF----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNP-AFRKLFPEY  147 (228)
Q Consensus        80 ~~L~~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~-~f~~~ar~~  147 (228)
                      ++|+.          ..+.|+|+++|.+||++|++||.+|+++++ +|.++|+         +|++|++ .|.++||+|
T Consensus       104 siL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p-~n~~aa~---------~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A          104 SILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSP-ANVDAAK---------EWREDRNGEFKRKVARC  172 (172)
T ss_dssp             GGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC---------------------------------------
T ss_pred             hhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCc-cCHHHHH---------HHHHCcHHHHHHHHHhC
Confidence            99962          236899999999999999999999999998 6777765         8999999 999999875

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=8.4e-36  Score=245.87  Aligned_cols=127  Identities=17%  Similarity=0.511  Sum_probs=117.0

Q ss_pred             CEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC-C--Cceec-CCCeEeccCCCCCCCCC
Q 027085           15 HVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-P--NGRFM-TQKKLCLSMSDFHPESW   89 (228)
Q Consensus        15 gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t-P--n~~v~-~~G~iCl~~L~~~~~~W   89 (228)
                      ++.+.+ +++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.| +  |+||+ .+|.||+++|+  +++|
T Consensus        36 ~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~--~~~W  113 (172)
T 2y9m_A           36 IESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK--PEEW  113 (172)
T ss_dssp             EEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGS--TTTC
T ss_pred             eEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccC--CCCC
Confidence            577888 8899999999999999999999999999999999999999999999 5  56674 78999999995  4799


Q ss_pred             CCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHh
Q 027085           90 NPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNC-KNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        90 ~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~-~~~~f~~~ar~~v~k~a~  153 (228)
                      +|+++|.+||.+|++||.+|+++++ ++.++|+         +|++ |++.|.++||+|+++|+.
T Consensus       114 ~p~~~i~~vL~si~~ll~~p~~~~p-~n~~aa~---------~~~~~d~~~f~~~~~~~~~~~~~  168 (172)
T 2y9m_A          114 TPVWDLLHCVHAVWRLLREPVCDSP-LDVDIGN---------IIRCGDMSAYQGIVKYFLAERER  168 (172)
T ss_dssp             CTTCCHHHHHHHHHHHHHSCCTTSC-SSHHHHH---------HHTTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCcCcHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHhCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998 7777665         8999 999999999999999875

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.4e-36  Score=243.23  Aligned_cols=126  Identities=19%  Similarity=0.401  Sum_probs=117.4

Q ss_pred             CCCCCEEEe-eCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCCCCCC
Q 027085           11 EPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPE   87 (228)
Q Consensus        11 ~p~~gi~v~-p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~~~~~   87 (228)
                      ++++||++. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||+++|+   +
T Consensus        19 ~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~---~   94 (160)
T 1y8x_A           19 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR---E   94 (160)
T ss_dssp             CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGT---T
T ss_pred             CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccch---h
Confidence            478899998 8899999999998 9999999999999999999999999999999996  6778999999999998   8


Q ss_pred             CCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Q 027085           88 SWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEK  150 (228)
Q Consensus        88 ~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k  150 (228)
                      +|+|+++|.+||.+|+++|.+|+++++ ++.++|+         +|++|++.|.++||++++.
T Consensus        95 ~W~p~~~i~~vL~~i~~ll~~Pn~~~p-~n~~aa~---------~~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A           95 DWKPVLTINSIIYGLQYLFLEPNPEDP-LNKEAAE---------VLQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             TCCTTCCHHHHHHHHHHHHHSCCCSSC-SCHHHHH---------HHHSCHHHHHHHHHHHHHS
T ss_pred             hccCCCCHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHhh
Confidence            999999999999999999999999998 6666665         8999999999999999875

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=251.64  Aligned_cols=130  Identities=19%  Similarity=0.495  Sum_probs=119.6

Q ss_pred             CCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecC-CCeEeccCCCCCCCCCC
Q 027085           14 SHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT-QKKLCLSMSDFHPESWN   90 (228)
Q Consensus        14 ~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~-~G~iCl~~L~~~~~~W~   90 (228)
                      +||++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+  |+||+. +|.||+++|+   ++|+
T Consensus        40 ~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~---~~Ws  115 (179)
T 2z5d_A           40 SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN---QTWT  115 (179)
T ss_dssp             SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH---HHCC
T ss_pred             CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccc---cCCC
Confidence            58888887 679999999999999999999999999999999999999999995  566888 9999999997   8999


Q ss_pred             CCcchHHHHHh-hhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhh
Q 027085           91 PMWSVSSILTG-LLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLA  157 (228)
Q Consensus        91 p~~~i~~vL~~-i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~  157 (228)
                      |+++|.+||.+ |++||.+|+++++ ++.++|+         +|++|++.|.++||+|+++||.....
T Consensus       116 P~~ti~~iL~s~I~~Ll~~Pn~~~p-~n~eaa~---------~~~~d~~~y~~~vr~~~~~~a~~~~~  173 (179)
T 2z5d_A          116 ALYDLTNIFESFLPQLLAYPNPIDP-LNGDAAA---------MYLHRPEEYKQKIKEYIQKYATEEAL  173 (179)
T ss_dssp             TTCCTTHHHHTHHHHHHHSCCCSSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHSSHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHHHHcccchh
Confidence            99999999999 9999999999998 6766665         89999999999999999999986543

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.3e-35  Score=273.18  Aligned_cols=141  Identities=21%  Similarity=0.541  Sum_probs=131.0

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||++
T Consensus        10 kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~   89 (399)
T 4ddg_A           10 KELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLD   89 (399)
T ss_dssp             HHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCCG
T ss_pred             HHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeCc
Confidence            45556889999999999999999999999999999999999999999999999999999999997  7789999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQL  156 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~  156 (228)
                      +|+   ++|+|+++|++||.+|+++|.+|+|++| +|.++|+         +|++|++.|.++||+||++|+....
T Consensus        90 il~---~~W~p~~~i~~vL~~i~~ll~~pnp~~p-~n~~aa~---------~~~~d~~~y~~~~~~~~~~~a~~~v  152 (399)
T 4ddg_A           90 ILR---SQWSPALTISKVLLSICSLLCDPNPDDP-LVPEIAR---------IYKTDREKYNRIAREWTQKYAMGGS  152 (399)
T ss_dssp             GGT---TSCCTTCCHHHHHHHHHHHHHSCCTTSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHTSCTT
T ss_pred             ccc---cCCCccccHHHHHHHHHHHHcCCCCCch-hhHHHHH---------HHHHCHHHHHHHHHHHHHHhhcccc
Confidence            997   9999999999999999999999999998 7776665         8999999999999999999986533

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=6e-36  Score=246.58  Aligned_cols=140  Identities=19%  Similarity=0.432  Sum_probs=122.9

Q ss_pred             cchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCCeEecc
Q 027085            4 GCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQKKLCLS   80 (228)
Q Consensus         4 ~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G~iCl~   80 (228)
                      +.-.+++++. ++   +.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+ .+|.||++
T Consensus        20 El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~   95 (171)
T 1yf9_A           20 DYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD   95 (171)
T ss_dssp             HHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHH
T ss_pred             HHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEecc
Confidence            4445667663 44   358899999999999999999999999999999999999999999996  67788 59999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhh-hccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhhhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGL-LSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQ  159 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i-~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~~~  159 (228)
                      +|+   ++|+|+++|.+||.+| ++||.+|+++++ ++.++|+         +|.+|++.|.++||+|+++|+......+
T Consensus        96 iL~---~~W~p~~~i~~vL~sil~~ll~~Pn~~~p-~n~~aa~---------~~~~d~~~y~~~vr~~~~~~a~~~~~~~  162 (171)
T 1yf9_A           96 VIN---QTWTPMYQLENIFDVFLPQLLRYPNPSDP-LNVQAAH---------LLHADRVGFDALLREHVSTHATPQKALE  162 (171)
T ss_dssp             HHH---HHCCTTCCTHHHHHTHHHHHHHSCCSSCC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             ccc---cCCCCCCcHHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHHcChhhHhc
Confidence            997   8999999999999997 799999999998 6666664         8999999999999999999998766544


Q ss_pred             h
Q 027085          160 R  160 (228)
Q Consensus       160 ~  160 (228)
                      .
T Consensus       163 ~  163 (171)
T 1yf9_A          163 S  163 (171)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.7e-35  Score=245.71  Aligned_cols=127  Identities=18%  Similarity=0.359  Sum_probs=118.1

Q ss_pred             CCCCCEEEe-eCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCCCCCC
Q 027085           11 EPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPE   87 (228)
Q Consensus        11 ~p~~gi~v~-p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~~~~~   87 (228)
                      ++++||++. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||+++|+   +
T Consensus        39 ~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~---~  114 (180)
T 2nvu_C           39 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR---E  114 (180)
T ss_dssp             CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGT---T
T ss_pred             CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEccccc---c
Confidence            478899998 8899999999998 9999999999999999999999999999999996  7778999999999998   8


Q ss_pred             CCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085           88 SWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY  151 (228)
Q Consensus        88 ~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~  151 (228)
                      +|+|+++|.+||.+|+++|.+|+++++ ++.++|.         +|.+|++.|.++||++++..
T Consensus       115 ~W~p~~~i~~vL~si~~ll~~Pn~~~p-~n~~aa~---------~~~~d~~~f~~~v~~~v~~~  168 (180)
T 2nvu_C          115 DWKPVLTINSIIYGLQYLFLEPNPEDP-LNKEAAE---------VLQNNRRLFEQNVQRSMRGG  168 (180)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHSCCTTSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHSE
T ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999998 6666665         89999999999999998753

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=5.4e-34  Score=238.54  Aligned_cols=126  Identities=18%  Similarity=0.361  Sum_probs=117.5

Q ss_pred             CCCCEEEe----eCCCCce---EEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCC
Q 027085           12 PVSHVVAR----PSPNDIL---EWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMS   82 (228)
Q Consensus        12 p~~gi~v~----p~~~dl~---~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L   82 (228)
                      +++||++.    ++++|++   +|+++|. |++|||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||+++|
T Consensus        43 ~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL  121 (190)
T 3o2u_A           43 LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL  121 (190)
T ss_dssp             CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred             CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhc
Confidence            67899998    8999999   9999997 788999999999999999999999999999997  777899999999999


Q ss_pred             CCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085           83 DFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY  151 (228)
Q Consensus        83 ~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~  151 (228)
                      +   ++|+|+++|.+||.+|+++|.+|+|+++ +|.++|+         +|.+|++.|.++||+|++.+
T Consensus       122 ~---~~W~p~~~i~~vL~~i~~ll~~pn~~~p-ln~~aa~---------~~~~d~~~f~~~ar~~~~~~  177 (190)
T 3o2u_A          122 R---EDWSPALDLQSIITGLLFLFLEPNPNDP-LNKDAAK---------LLCEGEKEFAEAVRLTMSGG  177 (190)
T ss_dssp             T---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SSHHHHH---------HHHTCHHHHHHHHHHHHBTC
T ss_pred             c---CCCCCCCCHHHHHHHHHHHHhCCCCCcc-hhHHHHH---------HHHHCHHHHHHHHHHHHHhc
Confidence            8   9999999999999999999999999998 7777765         89999999999999999654

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=99.98  E-value=6.7e-33  Score=217.43  Aligned_cols=108  Identities=24%  Similarity=0.483  Sum_probs=96.5

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.++++|+++|+++|.||+|||||||+|+++|.||++||++||+|+|.|+   |+||+.+|+||+
T Consensus        13 kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~iCl   92 (125)
T 2fo3_A           13 KELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL   92 (125)
T ss_dssp             HHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCC
T ss_pred             HHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEc
Confidence            35556788999999999999999999999999999999999999999999999999999999995   577999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCC
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTT  113 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~  113 (228)
                      ++|+   ++|+|+++|.+||.+|++||.+|++..
T Consensus        93 ~iL~---~~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           93 SLLG---DDYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             GGGT---TTCCTTCCHHHHHHHHHHHHC------
T ss_pred             hhcC---CCCCCCCcHHHHHHHHHHHHhCccccc
Confidence            9997   899999999999999999999987643

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=3.4e-32  Score=216.41  Aligned_cols=106  Identities=24%  Similarity=0.471  Sum_probs=98.9

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+   |+||+.+|+||+
T Consensus        27 kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~ICl  106 (136)
T 2h2y_A           27 KELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICL  106 (136)
T ss_dssp             HHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCBCC
T ss_pred             HHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEC
Confidence            34556788999999999999999999999999999999999999999999999999999999995   678999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCC
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSP  111 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p  111 (228)
                      ++|+   ++|+|+++|.+||.+|++||.+|+.
T Consensus       107 ~iL~---~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A          107 SVLG---DDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             GGGT---TTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             cccc---CCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            9997   8999999999999999999998753

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.97  E-value=1e-32  Score=226.30  Aligned_cols=120  Identities=18%  Similarity=0.351  Sum_probs=108.7

Q ss_pred             CCCEEEeeCCCCceEEEEEEEcCCCCCCC--CcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCCCCCCC
Q 027085           13 VSHVVARPSPNDILEWHYVLEGSNGTPFA--GGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPES   88 (228)
Q Consensus        13 ~~gi~v~p~~~dl~~w~~~I~Gp~~TpYe--gG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~~~~~~   88 (228)
                      +.||++.++++|+++|+++|.||+||||+  ||+|+++|.||++||++||+|+|.||  |+||+.+|.||+++|+   ++
T Consensus        37 ~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~---~~  113 (167)
T 4ds2_A           37 HSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVN---DF  113 (167)
T ss_dssp             SSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHH---TT
T ss_pred             CCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCCEEEcccCc---CC
Confidence            78999999999999999999999999999  99999999999999999999999997  7778999999999997   99


Q ss_pred             CCCCcchHHHHH-hhhccccC--CCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHH
Q 027085           89 WNPMWSVSSILT-GLLSFMMD--TSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFP  145 (228)
Q Consensus        89 W~p~~~i~~vL~-~i~~ll~~--p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar  145 (228)
                      |+|++++.++|+ .|++|+.+  |+++++ +|.++|+         +|++|++.|.++||
T Consensus       114 W~p~~~i~~vll~~l~~l~~~~~pn~~~p-~n~eaa~---------l~~~d~~~f~~~vr  163 (167)
T 4ds2_A          114 WTPDQHASDVIKLVLDRVFSQYKSRRDDD-VNPEARH---------YLEKFPQDFAARVR  163 (167)
T ss_dssp             CCTTSCHHHHHHHHHHHHHTSTTSCCSCC-CCHHHHH---------HHHHCHHHHHHHHT
T ss_pred             CCCCCChHHHHHHHHHHHHhcCCCCCcch-HhHHHHH---------HHHHCHHHHHHHHh
Confidence            999999999754 57777765  688887 6666665         89999999999987

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.97  E-value=8.9e-32  Score=240.49  Aligned_cols=143  Identities=20%  Similarity=0.305  Sum_probs=120.2

Q ss_pred             cchhhhhCCCC----CEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC-------Cceec
Q 027085            4 GCFYHVQEPVS----HVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-------NGRFM   72 (228)
Q Consensus         4 ~~~~l~~~p~~----gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP-------n~~v~   72 (228)
                      +.-.+++++++    ++++.++++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+|.|+       |+||+
T Consensus        84 El~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~  163 (323)
T 3ceg_A           84 EAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLY  163 (323)
T ss_dssp             HHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBC
T ss_pred             HHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCC
Confidence            44456777776    46678899999999999999999999999999999999999999999999997       67899


Q ss_pred             CCCeEeccCCCC-C---CCCCCCCc-chHHHHHhhhcccc--CCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHH
Q 027085           73 TQKKLCLSMSDF-H---PESWNPMW-SVSSILTGLLSFMM--DTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFP  145 (228)
Q Consensus        73 ~~G~iCl~~L~~-~---~~~W~p~~-~i~~vL~~i~~ll~--~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar  145 (228)
                      .+|.||+++|+. +   .+.|+|++ +|.+||++|++||.  +|++++| .+..++.       +.+|.+|++.|.++||
T Consensus       164 ~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP-~~~~a~a-------~~~~~~d~~~Y~~~vr  235 (323)
T 3ceg_A          164 NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEP-GYERSRG-------TPSGTQSSREYDGNIR  235 (323)
T ss_dssp             TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGST-TGGGGTT-------SHHHHHHHHHHHHHHH
T ss_pred             cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCc-cCHHHHH-------hhhhhhhHHHHHHHHH
Confidence            999999999962 1   26999999 89999999999997  5555776 3332210       1268889999999999


Q ss_pred             HHHHHHHhh
Q 027085          146 EYVEKYNEQ  154 (228)
Q Consensus       146 ~~v~k~a~~  154 (228)
                      +|+++|+..
T Consensus       236 ~~t~k~A~~  244 (323)
T 3ceg_A          236 QATVKWAML  244 (323)
T ss_dssp             HHHHHHTTH
T ss_pred             HHHHHHhhH
Confidence            999999865

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.97  E-value=8.8e-32  Score=218.65  Aligned_cols=115  Identities=18%  Similarity=0.250  Sum_probs=102.0

Q ss_pred             ccchhhhhC-CCCCEEEeeCC-C--CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCe
Q 027085            3 NGCFYHVQE-PVSHVVARPSP-N--DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKK   76 (228)
Q Consensus         3 ~~~~~l~~~-p~~gi~v~p~~-~--dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~   76 (228)
                      ++.-.++++ +++||++.+.. +  |+++|+++|.||++||||||+|+++|.||++||++||+|+|.|+  |+||+.+|+
T Consensus        28 kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~  107 (156)
T 2q0v_A           28 DELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGR  107 (156)
T ss_dssp             HHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTSB
T ss_pred             HHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCCe
Confidence            344567777 88999998853 3  59999999999999999999999999999999999999999996  667899999


Q ss_pred             E---eccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHH
Q 027085           77 L---CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEE  122 (228)
Q Consensus        77 i---Cl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~  122 (228)
                      |   |+++|+    +|+|+++|++||.+|++||.+|+++++ ++.++|+
T Consensus       108 icisCL~iL~----~WsP~~ti~~vL~sI~~ll~~Pn~~~p-~n~~aa~  151 (156)
T 2q0v_A          108 VIKNNLHILK----NWNRNYTIETILISLRQEMLSSANKRL-PQPNEGE  151 (156)
T ss_dssp             BCGGGSHHHH----TCCTTCCHHHHHHHHHHHTTSTTTTTC-CCCCTTC
T ss_pred             Eehhhccccc----CCCCcCcHHHHHHHHHHHHhCCCCCCc-CChHHHH
Confidence            9   888885    599999999999999999999999998 6776664

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=2.2e-31  Score=211.77  Aligned_cols=102  Identities=24%  Similarity=0.519  Sum_probs=94.8

Q ss_pred             ccchhhhhCCCCCEEEe--eCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC----CceecCCCe
Q 027085            3 NGCFYHVQEPVSHVVAR--PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP----NGRFMTQKK   76 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~--p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP----n~~v~~~G~   76 (228)
                      ++.-.+++++++||++.  ++++|+++|+++|.||+|||||||+|+++|.||++||++||+|+|.||    |+||+.+|+
T Consensus        29 kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~  108 (136)
T 2a7l_A           29 KELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGH  108 (136)
T ss_dssp             HHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCB
T ss_pred             HHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCe
Confidence            35556788999999965  889999999999999999999999999999999999999999999995    678999999


Q ss_pred             EeccCCCCCCCCCCCCcchHHHHHhhhcccc
Q 027085           77 LCLSMSDFHPESWNPMWSVSSILTGLLSFMM  107 (228)
Q Consensus        77 iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~  107 (228)
                      ||+++|+   ++|+|+++|++||.+|++||.
T Consensus       109 ICL~iL~---~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          109 ICLSILT---EDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             BCCGGGT---TTCCTTSCHHHHHHHHHHHTC
T ss_pred             EEchhcC---CCCCCCCcHHHHHHHHHHHhC
Confidence            9999998   999999999999999999884

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.97  E-value=3.7e-31  Score=215.76  Aligned_cols=117  Identities=17%  Similarity=0.212  Sum_probs=101.3

Q ss_pred             ccchhhhhCCCCC-EEEee-CCCC--ceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCC
Q 027085            3 NGCFYHVQEPVSH-VVARP-SPND--ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQK   75 (228)
Q Consensus         3 ~~~~~l~~~p~~g-i~v~p-~~~d--l~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G   75 (228)
                      ++.-.+++++++| +.+.+ +++|  +++|+++|.||+|||||||+|+++|.||++||++||+|+|.||  |+||+ .+|
T Consensus        32 kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G  111 (160)
T 2a4d_A           32 EELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNG  111 (160)
T ss_dssp             HHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTC
T ss_pred             HHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCC
Confidence            3455678888888 77877 4555  9999999999999999999999999999999999999999996  66787 699


Q ss_pred             eEeccCCCCCCCCCCCCcchHHHHHhhhcccc-CCCCCCCCCCChHH
Q 027085           76 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMM-DTSPTTGSVNTTTE  121 (228)
Q Consensus        76 ~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~-~p~p~~~~~~~~~a  121 (228)
                      +||+++|+.. ++|+|+++|++||++|++||. +||++++ .+.++|
T Consensus       112 ~ICl~iL~~~-~~WsP~~ti~~vL~sI~~ll~~~pn~~~P-~n~eaa  156 (160)
T 2a4d_A          112 VVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLP-QPPEGQ  156 (160)
T ss_dssp             BBCGGGSHHH-HTCCTTCCHHHHHHHHHHHHTSTTTTTCC-CCCTTC
T ss_pred             EEehhhcCCc-cCCCccCcHHHHHHHHHHHHccCCCCCCC-CChhhc
Confidence            9999998633 689999999999999999995 6899998 555554

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.96  E-value=3.6e-31  Score=210.83  Aligned_cols=113  Identities=12%  Similarity=0.178  Sum_probs=97.4

Q ss_pred             cchhhhhC-CCCCEEEeeCC-C--CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCC-Ce
Q 027085            4 GCFYHVQE-PVSHVVARPSP-N--DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQ-KK   76 (228)
Q Consensus         4 ~~~~l~~~-p~~gi~v~p~~-~--dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~-G~   76 (228)
                      +.-.++++ +++||++.+.+ +  |+++|+++|.||++||||||+|+++|.||++||++||+|+|.|+  |+||+.+ |.
T Consensus        14 El~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~   93 (138)
T 1jat_B           14 ELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGE   93 (138)
T ss_dssp             HHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCB
T ss_pred             HHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCE
Confidence            44556777 78999998843 3  49999999999999999999999999999999999999999996  6678886 99


Q ss_pred             E--eccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHH
Q 027085           77 L--CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTE  121 (228)
Q Consensus        77 i--Cl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a  121 (228)
                      |  |+++|+    +|+|+++|++||.+|+++|.+|+++++ ++.++|
T Consensus        94 i~~cL~~l~----~W~p~~~i~~vl~~i~~ll~~pn~~~p-~~~~~~  135 (138)
T 1jat_B           94 VQTDFHTLR----DWKRAYTMETLLLDLRKEMATPANKKL-RQPKEG  135 (138)
T ss_dssp             BCTTSHHHH----TCCTTCCHHHHHHHHHHHHTSHHHHTS-CCCCTT
T ss_pred             EeeecccCC----CCCCcCcHHHHHHHHHHHHcCCCCCCC-CCcchh
Confidence            9  999884    799999999999999999999999997 555554

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.96  E-value=8e-31  Score=215.74  Aligned_cols=117  Identities=17%  Similarity=0.212  Sum_probs=100.9

Q ss_pred             ccchhhhhCCCCC-EEEee-CCCC--ceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCC
Q 027085            3 NGCFYHVQEPVSH-VVARP-SPND--ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQK   75 (228)
Q Consensus         3 ~~~~~l~~~p~~g-i~v~p-~~~d--l~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G   75 (228)
                      ++.-.+++++++| +.+.+ +++|  +++|+++|.||+|||||||+|+++|.||++||++||+|+|.|+  |+||+ .+|
T Consensus        42 kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G  121 (170)
T 2hlw_A           42 EELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNG  121 (170)
T ss_dssp             HHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSC
T ss_pred             HHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCC
Confidence            3445677888888 67776 5554  9999999999999999999999999999999999999999997  67787 799


Q ss_pred             eEeccCCCCCCCCCCCCcchHHHHHhhhcccc-CCCCCCCCCCChHH
Q 027085           76 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMM-DTSPTTGSVNTTTE  121 (228)
Q Consensus        76 ~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~-~p~p~~~~~~~~~a  121 (228)
                      .||+++|+.. ++|+|+++|++||++|++||. .||++++ .+.++|
T Consensus       122 ~ICl~iL~~~-~~WsP~~ti~~vL~sI~~ll~~~pn~~~P-~n~eaa  166 (170)
T 2hlw_A          122 VVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLP-QPPEGQ  166 (170)
T ss_dssp             BBCTTTCHHH-HTCCSSCCHHHHHHHHHHHHHSTTTSSSC-CCSSCC
T ss_pred             EEEhhhcCCC-CCCCccCcHHHHHHHHHHHHccCCCCCCC-CCcccc
Confidence            9999998633 689999999999999999997 5899997 555544

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.96  E-value=2e-30  Score=216.21  Aligned_cols=129  Identities=13%  Similarity=0.330  Sum_probs=109.0

Q ss_pred             cchhhhhCC---CCCEEEeeCCCCceEEEEEEEcC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCceeecCCC
Q 027085            4 GCFYHVQEP---VSHVVARPSPNDILEWHYVLEGS-NGTPFAG-----------GYYYGKIKFPPEYPYKPPGILMITPN   68 (228)
Q Consensus         4 ~~~~l~~~p---~~gi~v~p~~~dl~~w~~~I~Gp-~~TpYeg-----------G~f~~~i~fp~~YP~~pP~v~F~tPn   68 (228)
                      +.-.+++++   +.||++.+.++|+++|+++|.|| ++|||+|           |+|+|+|.||++||++||+|+|.||+
T Consensus        35 El~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi  114 (186)
T 1zuo_A           35 ELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPV  114 (186)
T ss_dssp             HHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESC
T ss_pred             HHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCc
Confidence            445567777   68999999999999999999998 9999998           89999999999999999999999984


Q ss_pred             --c-eecCCCeEeccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHH
Q 027085           69 --G-RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFP  145 (228)
Q Consensus        69 --~-~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar  145 (228)
                        + ||+.+|.||+++|+  +++|+|+++|++||++|++||.+|++..                  .|..++..|.+.++
T Consensus       115 ~hPnnV~~~G~ICL~iL~--~~~WsP~~ti~~VL~sI~slL~~p~a~~------------------~~~~~~~~Y~~~~~  174 (186)
T 1zuo_A          115 LSGGYVLGGGALCMELLT--KQGWSSAYSIESVIMQINATLVKGKARV------------------QFGANKNQYNLARA  174 (186)
T ss_dssp             EESTTBCGGGBBCCGGGS--TTTCCTTSCHHHHHHHHHHHHHHTTCEE------------------CTTCCTTCCCHHHH
T ss_pred             cCCCccCCCCcEEeccCC--CCCCCCcCcHHHHHHHHHHHHcCCChhH------------------hhccCHHHHhHHHH
Confidence              4 48889999999995  3799999999999999999999986644                  34445566666666


Q ss_pred             HHHHHHH
Q 027085          146 EYVEKYN  152 (228)
Q Consensus       146 ~~v~k~a  152 (228)
                      +.+.+..
T Consensus       175 ~~~~~~~  181 (186)
T 1zuo_A          175 QQSYNSI  181 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665544

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.78  E-value=1e-20  Score=153.53  Aligned_cols=81  Identities=17%  Similarity=0.335  Sum_probs=72.5

Q ss_pred             EeeCCCCceEEEEEEEcCCCCCCCCc----------EEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEeccCCCC
Q 027085           18 ARPSPNDILEWHYVLEGSNGTPFAGG----------YYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLCLSMSDF   84 (228)
Q Consensus        18 v~p~~~dl~~w~~~I~Gp~~TpYegG----------~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iCl~~L~~   84 (228)
                      +.+..+|+++|.++|.||+||+|+||          .|+++|.||++||++||+|+|.++   |++++.+|+|||++|. 
T Consensus        48 v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~-  126 (172)
T 2z6o_A           48 VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHF-  126 (172)
T ss_dssp             HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTH-
T ss_pred             hccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhc-
Confidence            56677899999999999999999999          999999999999999999999885   7779999999999983 


Q ss_pred             CCC---CCCCCcchHHHHH
Q 027085           85 HPE---SWNPMWSVSSILT  100 (228)
Q Consensus        85 ~~~---~W~p~~~i~~vL~  100 (228)
                       ..   .|+|.++|.++|.
T Consensus       127 -kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          127 -KPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             -HHHHHHHTTSCCHHHHHH
T ss_pred             -cccccccCCccCHHHHHh
Confidence             13   4559999999984

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.63  E-value=2.9e-16  Score=127.73  Aligned_cols=91  Identities=16%  Similarity=0.258  Sum_probs=78.3

Q ss_pred             eeCCCCceEEEEEEEcCCCCCCCCcE---EEEEEEcCCCCCCCCCceeecCC-------------CceecCCCeEeccCC
Q 027085           19 RPSPNDILEWHYVLEGSNGTPFAGGY---YYGKIKFPPEYPYKPPGILMITP-------------NGRFMTQKKLCLSMS   82 (228)
Q Consensus        19 ~p~~~dl~~w~~~I~Gp~~TpYegG~---f~~~i~fp~~YP~~pP~v~F~tP-------------n~~v~~~G~iCl~~L   82 (228)
                      ...+|...++-+.+.|...++|+||.   |.+.|.||++||++||.|.|.++             |.||+.+|+||+++|
T Consensus        54 yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL  133 (162)
T 3r3q_A           54 FTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL  133 (162)
T ss_dssp             EECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGG
T ss_pred             EEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCccc
Confidence            34566677777777777779999999   88999999999999999977541             678999999999999


Q ss_pred             CCCCCCCCC-CcchHHHHHhhhccccCCCCCC
Q 027085           83 DFHPESWNP-MWSVSSILTGLLSFMMDTSPTT  113 (228)
Q Consensus        83 ~~~~~~W~p-~~~i~~vL~~i~~ll~~p~p~~  113 (228)
                      +    +|+| +.+|.++|.+|+++|.+|+|+.
T Consensus       134 ~----~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          134 H----AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             G----SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             c----cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence            4    6999 7899999999999999999875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.37  E-value=9.8e-14  Score=110.41  Aligned_cols=65  Identities=22%  Similarity=0.526  Sum_probs=56.8

Q ss_pred             CceEEEEEEEcCCCCCCCCc----------EEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEeccCCCCCCCCCC
Q 027085           24 DILEWHYVLEGSNGTPFAGG----------YYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLCLSMSDFHPESWN   90 (228)
Q Consensus        24 dl~~w~~~I~Gp~~TpYegG----------~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iCl~~L~~~~~~W~   90 (228)
                      +-.+|...+.||+||+|.|+          .|++++.||.+||..||.|+|.+.   +.+++.+|+|||+++      |+
T Consensus        56 ~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh------wk  129 (168)
T 3kpa_A           56 SDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH------FF  129 (168)
T ss_dssp             TTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT------HH
T ss_pred             ccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc------cc
Confidence            44579999999999999999          999999999999999999999983   456899999999863      77


Q ss_pred             CCcc
Q 027085           91 PMWS   94 (228)
Q Consensus        91 p~~~   94 (228)
                      |.|+
T Consensus       130 PlW~  133 (168)
T 3kpa_A          130 PLWA  133 (168)
T ss_dssp             HHHH
T ss_pred             hhhH
Confidence            6654

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.29  E-value=1.8e-12  Score=103.61  Aligned_cols=79  Identities=16%  Similarity=0.394  Sum_probs=69.8

Q ss_pred             CCCceEEEEEEEcCCCCCCCCcEEEE--EEEcCCCCCCCCCceeecCC--------CceecCCCeEeccCCCCCCCCCCC
Q 027085           22 PNDILEWHYVLEGSNGTPFAGGYYYG--KIKFPPEYPYKPPGILMITP--------NGRFMTQKKLCLSMSDFHPESWNP   91 (228)
Q Consensus        22 ~~dl~~w~~~I~Gp~~TpYegG~f~~--~i~fp~~YP~~pP~v~F~tP--------n~~v~~~G~iCl~~L~~~~~~W~p   91 (228)
                      ..+++.|.++|.    .+|+|+.|.+  .|.||++||++||.| |.+|        |.+||.+|+||++.|+    +|++
T Consensus        50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~----~W~~  120 (146)
T 3obq_A           50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH----EWKH  120 (146)
T ss_dssp             TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH----TCCT
T ss_pred             hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc----ccCC
Confidence            468999999999    6899999985  899999999999999 6653        6789999999999995    5988


Q ss_pred             -CcchHHHHHhhhccccCC
Q 027085           92 -MWSVSSILTGLLSFMMDT  109 (228)
Q Consensus        92 -~~~i~~vL~~i~~ll~~p  109 (228)
                       ..+|.+++..++++|.+.
T Consensus       121 ~~snL~~ll~~l~~~F~~e  139 (146)
T 3obq_A          121 PQSDLLGLIQVMIVVFGDE  139 (146)
T ss_dssp             TTCCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHhhC
Confidence             899999999999998764

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.98  E-value=0.24  Score=37.26  Aligned_cols=41  Identities=12%  Similarity=0.153  Sum_probs=27.0

Q ss_pred             eEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC
Q 027085           26 LEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT   66 (228)
Q Consensus        26 ~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t   66 (228)
                      ..+.+.|..-.+..-+.-.+.+.|.||++||..||.|...+
T Consensus        38 ~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           38 PSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             CEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             CEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            45555554222222223468899999999999999987543

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=89.83  E-value=0.59  Score=35.03  Aligned_cols=42  Identities=19%  Similarity=0.190  Sum_probs=27.7

Q ss_pred             ceEEEEEEEcCCCCCCC--CcEEEEEEEcCCCCCCCCCceeecC
Q 027085           25 ILEWHYVLEGSNGTPFA--GGYYYGKIKFPPEYPYKPPGILMIT   66 (228)
Q Consensus        25 l~~w~~~I~Gp~~TpYe--gG~f~~~i~fp~~YP~~pP~v~F~t   66 (228)
                      ...+.+.|..+.+..-+  .-.+.+.|.+|++||..+|.|...+
T Consensus        39 ~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           39 PWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             CEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             CeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            44555556533221111  2368899999999999999988665

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=89.80  E-value=0.7  Score=35.15  Aligned_cols=41  Identities=17%  Similarity=0.270  Sum_probs=28.3

Q ss_pred             ceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC
Q 027085           25 ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT   66 (228)
Q Consensus        25 l~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t   66 (228)
                      ...+.+.|.+..+ .-..-.+.+.|.+|++||..+|.|...+
T Consensus        45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            4556666764322 1112468899999999999999988654

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.03  E-value=0.97  Score=33.91  Aligned_cols=41  Identities=17%  Similarity=0.056  Sum_probs=27.7

Q ss_pred             ceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC
Q 027085           25 ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT   66 (228)
Q Consensus        25 l~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t   66 (228)
                      ...+.+.|...... =..-.+.+.|.+|++||..+|.|...+
T Consensus        39 ~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           39 GTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             CEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             CCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            45666667632210 012368999999999999999887554

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=84.36  E-value=0.56  Score=35.56  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             cEEEEEEEcCCCCCCCCCceeec
Q 027085           43 GYYYGKIKFPPEYPYKPPGILMI   65 (228)
Q Consensus        43 G~f~~~i~fp~~YP~~pP~v~F~   65 (228)
                      -.+.+.|.||++||..+|.|...
T Consensus        63 ~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           63 VQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             CEEEEEECCCTTTTSSCCCCEEE
T ss_pred             eEEEEEEECCCCCCCCCCcEEEe
Confidence            36899999999999999998764

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=83.68  E-value=1.1  Score=34.95  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCCCCCCceeecC
Q 027085           44 YYYGKIKFPPEYPYKPPGILMIT   66 (228)
Q Consensus        44 ~f~~~i~fp~~YP~~pP~v~F~t   66 (228)
                      .+.++|.+|++||..+|.|...+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEe
Confidence            79999999999999999887544

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=81.51  E-value=0.89  Score=35.31  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             EEEEEEEcCCCCCCCCCceeecCC
Q 027085           44 YYYGKIKFPPEYPYKPPGILMITP   67 (228)
Q Consensus        44 ~f~~~i~fp~~YP~~pP~v~F~tP   67 (228)
                      .+.+.|.+|.+||..||.|....+
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            588999999999999999875543

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=81.46  E-value=7.5  Score=31.58  Aligned_cols=66  Identities=21%  Similarity=0.271  Sum_probs=50.2

Q ss_pred             CCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeEeccCCCCCCCCCCCCcchHHHHHh
Q 027085           22 PNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTG  101 (228)
Q Consensus        22 ~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~  101 (228)
                      +.++...++.+..-.     |....++|.++.+||.++|.+...-|.+-            .   -.|++..++.+++..
T Consensus        22 d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~~~------------~---~~w~~~ssL~~v~~q   81 (186)
T 3zqs_A           22 DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPVPF------------C---ASWTPQSSLISIYSQ   81 (186)
T ss_dssp             CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSSCC------------C---CCCCTTCCHHHHHHH
T ss_pred             cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCCCc------------c---cccCCCccHHHHHHH
Confidence            467888888888533     57789999999999999998766656521            1   479998888888876


Q ss_pred             hhcccc
Q 027085          102 LLSFMM  107 (228)
Q Consensus       102 i~~ll~  107 (228)
                      .+..+.
T Consensus        82 F~~~Le   87 (186)
T 3zqs_A           82 FLAAIE   87 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	7e-41
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	4e-19
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	1e-18
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-18
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	4e-18
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-17
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	3e-17
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	7e-17
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	9e-17
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	2e-16
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	3e-16
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	3e-16
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	8e-16
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	3e-15
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-14
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	2e-14
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	2e-14
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	3e-14
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-14
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-14
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	4e-14
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	5e-14
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	7e-14
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	8e-14
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-13
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-12
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	7e-12
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	9e-12
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	3e-04

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score =  135 bits (340), Expect = 7e-41
 Identities = 82/142 (57%), Positives = 109/142 (76%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           ++PV ++ A P P++ILEWHYV+ G   TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct: 15  KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 74

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
           RF    +LCLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  
Sbjct: 75  RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQ 134

Query: 130 SLAFNCKNPAFRKLFPEYVEKY 151
           SLAFN K+  F +LFPE VE+ 
Sbjct: 135 SLAFNLKDKVFCELFPEVVEEI 156

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 78.2 bits (192), Expect = 4e-19
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 13  VSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFM 72
            S+ +A      + +W+  + G   +      Y   I   P YP  PP +  I+      
Sbjct: 25  CSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPC 84

Query: 73  TQKKLCLSMSDFH-PESWNPMWSVSSILTGLLSFMMD 108
                    +DFH    W   +++ ++L  L   M  
Sbjct: 85  VNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMAT 121

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 1e-18
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP- 67
           + PV    A     ND+  W  ++ G   T + GG +   + FP +YP +PP +  IT  
Sbjct: 13  KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 72

Query: 68  -NGRFMTQKKLCLSM----------SDFHPESWNPMWSVSSILTGLLSFMMD 108
            +        +C+S+           +   E W P+ +V +I+  ++S + D
Sbjct: 73  WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 124

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 76.7 bits (188), Expect = 2e-18
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           ++    V A P P++++ W+ ++ G   TP+  G +   ++F  EYP KPP +  ++   
Sbjct: 17  EDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF 76

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
                        D     W P + V+SILT + S   D +P + +             A
Sbjct: 77  HPNVYAN-GEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVE----------A 125

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQ 154
           +  F      + K   E VEK  E 
Sbjct: 126 ATLFKDHKSQYVKRVKETVEKSWED 150

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 4e-18
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 10  QEPVSHVVARPSP--NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP 67
            +P   +        N I +W   +EG+ GT + G  +    KF   YP+  P ++    
Sbjct: 17  NDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 76

Query: 68  ----NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
               +    +   +CLS+     E W+P  SV S+   ++S +
Sbjct: 77  NIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 116

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 73.2 bits (179), Expect = 2e-17
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
             P  +      PN+I  W     G   T +A   Y  KI FP +YP KPP +  +    
Sbjct: 12  NNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPP 71

Query: 67  PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
            +    +   +CLS+     + +NP  S+S ++  ++S +
Sbjct: 72  KHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 108

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 3e-17
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 13/149 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
            EP   +      + + +    + G   TP+  G +  ++  P  YP++PP I  +TP  
Sbjct: 16  TEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIY 75

Query: 68  NGRFMTQKKLCLSMSDFHPESW-NPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRL 126
           +    +  ++CL +    P+    P  +++++LT +   M + +P          +   +
Sbjct: 76  HPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP----------DDPLM 125

Query: 127 AKASLAFNCKNPAFRKLFPEYVEKYNEQQ 155
           A  S  F    PAF K   ++ EK+  Q+
Sbjct: 126 ADISSEFKYNKPAFLKNARQWTEKHARQK 154

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 72.5 bits (177), Expect = 7e-17
 Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 15/144 (10%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
           ++P +   A P  +D+  W   + G   +P+ GG ++  I FP +YP+KPP +   T   
Sbjct: 15  RDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 74

Query: 68  NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLA 127
           +    +   +CL +       W+P  ++S +L  + S + D +P    V           
Sbjct: 75  HPNINSNGSICLDILRSQ---WSPALTISKVLLSICSLLCDPNPDDPLVP---------- 121

Query: 128 KASLAFNCKNPAFRKLFPEYVEKY 151
           + +  +      + +L  E+ +KY
Sbjct: 122 EIARIYKTDRERYNQLAREWTQKY 145

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 71.9 bits (176), Expect = 9e-17
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 13  VSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFM 72
           VS  +       +  W  ++ G   T +    Y  KI+  P+YP  PP +  +T      
Sbjct: 26  VSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 85

Query: 73  TQKKL-CLSMSDFHP-ESWNPMWSVSSILTGLLSFMMD 108
                  +          W   +S+  +L  L   MM 
Sbjct: 86  VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS 123

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 71.4 bits (174), Expect = 3e-16
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 12  PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRF 71
               V A+    DI  W   + G  GTP+ GG++   I  PP+YPY PP +  +T     
Sbjct: 30  TSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHP 89

Query: 72  MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASL 131
               +      D     W+P  ++ + L  + + + D  PT    +         A+ + 
Sbjct: 90  NISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTD-PQD---------AEVAK 139

Query: 132 AFNCKNPAFRKLFPEYVEKY 151
                +P F +    + E +
Sbjct: 140 MMIENHPLFVQTAKLWTETF 159

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 3e-16
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           +     + A+P   D++EW   +EG   + + G  +   I F  EY Y PP +  IT   
Sbjct: 18  ENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF 77

Query: 70  RFMTQKKLCLSMSDF--HPESWNPMWSVSSILTGLLSFMMDTSP 111
                        DF  +PE WN  +++SSIL  L   + +   
Sbjct: 78  HPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVL 121

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 70.2 bits (171), Expect = 8e-16
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 23/158 (14%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           + PV    A     NDI +W  ++ G   T + GG++   + FP +YP KPP +  I+  
Sbjct: 14  RVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEI 73

Query: 69  GRFMTQKKLCLSMSDFHPES------------WNPMWSVSSILTGLLSFMMDTSPTTGSV 116
                 K+  + +S  H               W P+ +V +IL  ++S + D +  + + 
Sbjct: 74  WHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPAN 133

Query: 117 NTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ 154
               + ++               F+K   + V +  E+
Sbjct: 134 VDAAKMQRE----------NYAEFKKKVAQCVRRSQEE 161

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 3e-15
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 20  PSPNDILEWHYVLEGSNGTPFAGGYYYG--KIKFPPEYPYKPPGI-LMITPNGRFMTQKK 76
              +        L G+   P+ G  Y     +     YPY PP   +  T +    T K 
Sbjct: 41  VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 100

Query: 77  LCLSMSDFHP---ESWNPMWSVSSILTGLLSFMMDTSP 111
           +  +   + P   E  +P   +  ++  ++    D  P
Sbjct: 101 VDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 138

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 16/148 (10%)

Query: 10  QEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM 64
           ++     VA P+ N     +++ W   + G  GTP+ GG +  ++ F  +YP  PP    
Sbjct: 16  KDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 75

Query: 65  ITPNGRFMTQKKLCLSMSDFHPE-SWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEK 123
             P           +S+S    +  W P  ++  IL G+   + + +    +        
Sbjct: 76  EPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQA------ 129

Query: 124 QRLAKASLAFNCKNPAFRKLFPEYVEKY 151
               +A   +      + K      +K+
Sbjct: 130 ----EAYTIYCQNRVEYEKRVRAQAKKF 153

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
            +P   +   P+  D+ +    +EG  GTP+AGG +  K+    ++P  PP    +T   
Sbjct: 20  ADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF 79

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                    + + +     W     +  +L  +   ++  +P
Sbjct: 80  HPNVGANGEICV-NVLKRDWTAELGIRHVLLTIKCLLIHPNP 120

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 2e-14
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
           +  + +         ++L W  ++   +  P+  G +  +I FP EYP+KPP I   T  
Sbjct: 13  KCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKI 71

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAK 128
                 +K  + +     E+W P      ++  L++ + D  P                 
Sbjct: 72  YHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRAD---------- 121

Query: 129 ASLAFNCKNPAFRKLFPEYVEKY 151
            +  ++     F K   E+ +KY
Sbjct: 122 LAEEYSKDRKKFCKNAEEFTKKY 144

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 65.9 bits (160), Expect = 3e-14
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 9/145 (6%)

Query: 23  NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMS 82
           + + E+    +G  GTP+  G +   ++ P +YP+K P I            ++      
Sbjct: 23  DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 82

Query: 83  DFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRK 142
           D   ++W PM+ + +I    L  ++     +  +N          +A+   +     F  
Sbjct: 83  DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNV---------QAAHLLHADRVGFDA 133

Query: 143 LFPEYVEKYNEQQLAEQRVSEQLSP 167
           L  E+V  +   Q A + + E   P
Sbjct: 134 LLREHVSTHATPQKALESIPEAYRP 158

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 65.5 bits (159), Expect = 3e-14
 Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 11/146 (7%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
            +PV  + A P  +++  +   +EG   +P+  G +  ++  P +YP + P +  +T   
Sbjct: 17  SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY 76

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
                +       D    +W+P   + ++L  + + +   +P     N   E+  +    
Sbjct: 77  HPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK---- 131

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQ 155
                      +    E+ + Y +++
Sbjct: 132 ------NEQGAKAKAREWTKLYAKKK 151

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 65.6 bits (159), Expect = 3e-14
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 10  QEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
            +P +H+     S +DI        G  GTP+ GG +   I+ P EYP+KPP +   T  
Sbjct: 15  DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV 74

Query: 69  GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                         D    +W+P+ ++ S L  L + +    P
Sbjct: 75  YHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEP 117

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 65.2 bits (158), Expect = 4e-14
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
                 + A P  +++ +W   L+G   T +    Y   ++FP +YPYKPP +   TP  
Sbjct: 23  MSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW 82

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
                +       D   E+W   + V +IL  L S + + +                  A
Sbjct: 83  HPNVDQSGN-ICLDILKENWTASYDVRTILLSLQSLLGEPNN---------ASPLNAQAA 132

Query: 130 SLAFNCKNPAFRKLFPEYVEKYNE 153
            +  N     ++K+  E  +    
Sbjct: 133 DMWSN--QTEYKKVLHEKYKTAQS 154

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 64.8 bits (157), Expect = 5e-14
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
           ++P + V   P+ ++IL W  ++ G   TPF  G +   ++F  EYP KPP +  I+   
Sbjct: 17  EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMF 76

Query: 68  NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTT 113
           +        +CL +       W+P + V++ILT + S + + +P +
Sbjct: 77  HPNVYADGSICLDI---LQNRWSPTYDVAAILTSIQSLLDEPNPNS 119

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 7e-14
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 21/147 (14%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-- 67
            +P  +  A P  ++I EW   + G  G+ + GG ++  I F P+YP+KPP +   T   
Sbjct: 16  LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIY 75

Query: 68  NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD---TSPTTGSVNTTTEEKQ 124
           +    +Q  +CL +     ++W+P  ++S +L  + S + D     P  GS+ T     +
Sbjct: 76  HCNINSQGVICLDI---LKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNR 132

Query: 125 RLAKASLAFNCKNPAFRKLFPEYVEKY 151
                            ++  ++ ++Y
Sbjct: 133 A-------------EHDRMARQWTKRY 146

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (156), Expect = 8e-14
 Identities = 21/102 (20%), Positives = 37/102 (36%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
           +   + +       +  E    + G   TP+ GG Y  +IK P  YP+ PP +  IT   
Sbjct: 21  ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 80

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
                        D   + W    ++ ++L  L + +    P
Sbjct: 81  HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 122

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 2e-13
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
                 + A P  +++ +W   + G+ GT +    Y   ++FP  YPY  P +  +TP  
Sbjct: 15  MSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCY 74

Query: 70  RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKA 129
                 +  +S+ D   E W+ ++ V +IL  + S + + +          +       A
Sbjct: 75  HPNVDTQGNISL-DILKEKWSALYDVRTILLSIQSLLGEPNI---------DSPLNTHAA 124

Query: 130 SLAFNCKNPAFRKLFPEYVEKY 151
            L  N    AF+K   E   K 
Sbjct: 125 ELWKNPT--AFKKYLQETYSKQ 144

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 10  QEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP- 67
           ++    +VA P S N+I  W  +++G   TP+A G +  K++FP +YP  PP +      
Sbjct: 17  KDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI 76

Query: 68  -NGRFMTQKKLCLSM----------SDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
            +       ++C+S+           +   E W+P+ SV  IL  ++S + + + 
Sbjct: 77  LHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNI 131

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 7e-12
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 10  QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--P 67
             P +  ++   P+D+L +  V+   +   +  G +    K    YP+ PP +   T   
Sbjct: 16  NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY 74

Query: 68  NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 111
           +     +  +CL++     E W P+ +++SI+ GL    ++ +P
Sbjct: 75  HPNIDLEGNVCLNI---LREDWKPVLTINSIIYGLQYLFLEPNP 115

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 9e-12
 Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 13/118 (11%)

Query: 11  EPVSHVVARPSPNDILEWHYVLEGSN-GTPFAGG-----------YYYGKIKFPPEYPYK 58
                       + + +WH  L+  +  +P               Y      F   +P+ 
Sbjct: 22  YKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD 81

Query: 59  PPGILMITPNGRF-MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGS 115
           PP + ++ P            L M     + W+  +S+ S++  + + ++        
Sbjct: 82  PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQF 139

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 19/103 (18%)

Query: 22  PNDILEWHYVLEGSNGTPFAGGYYYG---KIKFPPEYPYKPPGILMITPNGRFMTQK--- 75
            +   +    + G+  T   G   +     +  P  YP KPP I +   N    T     
Sbjct: 48  SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSL 107

Query: 76  ----------KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
                      + L +            ++  ++  L+S + +
Sbjct: 108 PIQEYIDSNGWIALPILH---CWDPAAMNLIMVVQELMSLLHE 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.97
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	99.97
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.93
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.93
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.93
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.7
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.58
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	93.21
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	90.29
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	80.02

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=2.1e-39  Score=260.46  Aligned_cols=144  Identities=22%  Similarity=0.482  Sum_probs=132.1

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      +++.-.+++++++||++.|+++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|.||+
T Consensus         8 ~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~~g~icl   87 (154)
T d1yh2a1           8 KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICL   87 (154)
T ss_dssp             HHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCC
T ss_pred             HHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCCCCCccc
Confidence            345667889999999999999999999999999999999999999999999999999999999997  788999999999


Q ss_pred             cCCCCCC-CCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           80 SMSDFHP-ESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        80 ~~L~~~~-~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      ++|+... +.|+|++++.+||.+|+++|.+|+++++ .|.++++         +|.+|++.|.++||+||+|||+++
T Consensus        88 ~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p-~n~eaa~---------~~~~~~~~f~~~~r~~~~k~a~~~  154 (154)
T d1yh2a1          88 DVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDP-LMADISS---------EFKYNKPAFLKNARQWTEKHARQK  154 (154)
T ss_dssp             GGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccccCCccccCCccccHHHHHHHHHHHhccCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHHHHHHHhcCC
Confidence            9997543 6899999999999999999999999997 6666554         899999999999999999999753

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=255.19  Aligned_cols=137  Identities=19%  Similarity=0.445  Sum_probs=129.3

Q ss_pred             cchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccC
Q 027085            4 GCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM   81 (228)
Q Consensus         4 ~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~   81 (228)
                      +--.++++++.||++.|+++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||+++
T Consensus        10 El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~icl~~   89 (149)
T d1j7db_          10 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDI   89 (149)
T ss_dssp             HHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGG
T ss_pred             HHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCCCcEehHH
Confidence            4456889999999999999999999999999999999999999999999999999999999996  77799999999999


Q ss_pred             CCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           82 SDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        82 L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      |.   +.|+|++++.+||.+|+++|.+|+++++ .|.++|+         +|.+|++.|.++||+||++||.
T Consensus        90 l~---~~w~p~~~i~~il~~i~~ll~~p~~~~p-~n~eaa~---------l~~~~~~~f~~~ar~~~~kyA~  148 (149)
T d1j7db_          90 LK---DKWSPALQIRTVLLSIQALLSAPNPDDP-LANDVAE---------QWKTNEAQAIETARAWTRLYAM  148 (149)
T ss_dssp             GT---TSCCTTSCHHHHHHHHHHHHHSCCTTCT-TCCSHHH---------HHHHCHHHHHHHHHHHHHHHSC
T ss_pred             hc---CCCCCCccHHHHHHHHHHHHhCCCCCCh-hhHHHHH---------HHHHCHHHHHHHHHHHHHHhcc
Confidence            97   8999999999999999999999999998 7888876         8999999999999999999984

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=254.68  Aligned_cols=139  Identities=22%  Similarity=0.545  Sum_probs=129.5

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      +++.-.+++++++||++.+.++|+++|+++|.||.+|||+||+|+|.|.||++||++||+|+|.|+  |+||+.+|.||+
T Consensus         8 ~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~G~iCl   87 (148)
T d1y6la_           8 QKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICL   87 (148)
T ss_dssp             HHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCC
T ss_pred             HHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceECCCCeEEE
Confidence            345667899999999999999999999999999999999999999999999999999999999996  777899999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      ++|.   ++|+|+++|.+||.+|+++|.+|+++++ ++.++++         +|.+|++.|.++||+|++|||.
T Consensus        88 ~~l~---~~W~p~~~l~~il~~i~~ll~~p~~~~p-~n~~aa~---------~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          88 DILK---DNWSPALTISKVLLSICSLLTDCNPADP-LVGSIAT---------QYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             GGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHCC
T ss_pred             EecC---CcCCCcEeHHHHHHHHHHHHhCCCCccc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhCC
Confidence            9997   8999999999999999999999999997 6666665         8999999999999999999973

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1.6e-38  Score=253.38  Aligned_cols=138  Identities=22%  Similarity=0.572  Sum_probs=129.5

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      +++.-.++++++.||++.++++|+++|+++|.||.||||+||.|+++|.||++||++||+|+|.|+  |+||+.+|.||+
T Consensus         7 ~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~iCl   86 (147)
T d1z2ua1           7 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICL   86 (147)
T ss_dssp             HHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCC
T ss_pred             HHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECCCCCEee
Confidence            456667899999999999999999999999999999999999999999999999999999999997  788999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                      ++|+   +.|+|++++.+||.+|+++|.+|+++++ .+.++++         +|.+|++.|.++||+|++|||
T Consensus        87 ~~l~---~~w~p~~~i~~Il~~i~~ll~~p~~~~~-~n~ea~~---------~~~~~~~~f~~~~~~~~~k~A  146 (147)
T d1z2ua1          87 DILR---SQWSPALTISKVLLSICSLLCDPNPDDP-LVPEIAR---------IYKTDRERYNQLAREWTQKYA  146 (147)
T ss_dssp             GGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHC
T ss_pred             ehhc---ccCCCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhC
Confidence            9998   8999999999999999999999999997 6666664         899999999999999999997

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=1.4e-38  Score=255.64  Aligned_cols=138  Identities=17%  Similarity=0.440  Sum_probs=130.1

Q ss_pred             cchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccC
Q 027085            4 GCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM   81 (228)
Q Consensus         4 ~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~   81 (228)
                      +.-.|++++++||++.|+++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||+++
T Consensus        11 E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~G~icl~~   90 (152)
T d1jata_          11 ETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDV   90 (152)
T ss_dssp             HHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGG
T ss_pred             HHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCCCCCeeecc
Confidence            4456889999999999999999999999999999999999999999999999999999999996  77799999999999


Q ss_pred             CCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhh
Q 027085           82 SDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ  154 (228)
Q Consensus        82 L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~  154 (228)
                      +.   ++|+|+++|.+||.+|+++|.+|+++++ .|.++|+         +|.+|++.|.++||+||++||.+
T Consensus        91 ~~---~~W~p~~~i~~il~~i~~ll~~P~~~~p-~n~eaa~---------l~~~d~~~f~~~~r~~~~~~a~~  150 (152)
T d1jata_          91 LK---TNWSPALQIRTVLLSIQALLASPNPNDP-LANDVAE---------DWIKNEQGAKAKAREWTKLYAKK  150 (152)
T ss_dssp             GT---TTCCTTCCHHHHHHHHHHHHHSCCTTST-TCCTTHH---------HHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             cc---ccCCchhHHHHHHHHHHHHHcCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHHhcc
Confidence            87   8999999999999999999999999998 7888776         89999999999999999999875

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=3.3e-38  Score=253.22  Aligned_cols=136  Identities=16%  Similarity=0.371  Sum_probs=128.1

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      ++.-.+++++++||++.|+++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        13 kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~ic~~   92 (151)
T d1zdna1          13 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVN   92 (151)
T ss_dssp             HHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHH
T ss_pred             HHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCceecCCCCcccc
Confidence            45567889999999999999999999999999999999999999999999999999999999997  7789999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY  151 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~  151 (228)
                      +++   ++|+|+++|.+||.+|+++|.+|+++++ +|.++|+         +|.+|++.|.++||+||++|
T Consensus        93 ~l~---~~W~p~~~l~~il~~i~~~l~~p~~~~p-~n~eaa~---------~~~~~~~~f~~~ar~~~~~~  150 (151)
T d1zdna1          93 VLK---RDWTAELGIRHVLLTIKCLLIHPNPESA-LNEEAGR---------LLLENYEEYAARARLLTEIH  150 (151)
T ss_dssp             HHT---TTCCTTCCHHHHHHHHHHHHHSCCGGGC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHH
T ss_pred             ccc---ccCCccccHHHHHHHHHHHHhCCCCCch-hhHHHHH---------HHHHCHHHHHHHHHHHHHhh
Confidence            997   8999999999999999999999999987 6777765         89999999999999999998

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=1e-37  Score=249.62  Aligned_cols=136  Identities=24%  Similarity=0.545  Sum_probs=127.0

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      .+.-.+++++++||++.++++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        10 ~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~iCl~   89 (149)
T d1z3da1          10 RDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLD   89 (149)
T ss_dssp             HHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCG
T ss_pred             HHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEcCCCCEEec
Confidence            45557889999999999999999999999999999999999999999999999999999999996  7889999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY  151 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~  151 (228)
                      +|+   +.|+|+++|.+||.+|+++|.+|+++++ .|.++++         +|.+|++.|.++||+||+|.
T Consensus        90 ~l~---~~w~p~~~i~~il~~i~~ll~~p~~~~p-~n~eaa~---------~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          90 ILQ---NRWSPTYDVAAILTSIQSLLDEPNPNSP-ANSLAAQ---------LYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             GGT---TSCCTTCCHHHHHHHHHHTTSSCCCSSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHH
T ss_pred             ccc---ccCCCCCCHHHHHHHHHHHhCCCCCCCh-hhHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence            997   8999999999999999999999999987 6666664         89999999999999999986

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=1.4e-37  Score=249.40  Aligned_cols=140  Identities=26%  Similarity=0.520  Sum_probs=129.8

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      .+.-.++++++.||++.|.++|+++|+++|.||.||||+||+|+++|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        10 ~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~icl~   89 (153)
T d1ayza_          10 RDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLD   89 (153)
T ss_dssp             HHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCG
T ss_pred             HHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCCCCCccccc
Confidence            34557899999999999999999999999999999999999999999999999999999999996  7779999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      +|.   +.|+|+++|.+||.+|+++|.+|+++++ .|.++|+         +|.+|++.|.++||+|+++++++.
T Consensus        90 ~l~---~~W~p~~~i~~il~~i~~ll~~p~~~~~-~n~eaa~---------l~~~~~~~f~~~~~~~~~ks~~~~  151 (153)
T d1ayza_          90 ILQ---NRWTPTYDVASILTSIQSLFNDPNPASP-ANVEAAT---------LFKDHKSQYVKRVKETVEKSWEDD  151 (153)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHHTCCCCSSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc---ccCCCcCcHHHHHHHHHHHHcCCCCCCc-HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            997   9999999999999999999999999987 6666654         899999999999999999998654

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=6e-38  Score=250.42  Aligned_cols=137  Identities=23%  Similarity=0.458  Sum_probs=127.0

Q ss_pred             CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      +++.-.+++++++||++.++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||+
T Consensus         7 ~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~icl   86 (146)
T d1i7ka_           7 QQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISL   86 (146)
T ss_dssp             HHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCCCCcccc
Confidence            345667889999999999999999999999999999999999999999999999999999999997  778999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                      ++|.   ++|+|+++|.+||.+|+++|.+|+++++ +|.++|+         +|+ |++.|.++|+++++||+
T Consensus        87 ~~l~---~~W~p~~~i~~il~~i~~ll~~p~~~~p-~n~~aa~---------l~~-n~~~f~k~~~~~~~K~~  145 (146)
T d1i7ka_          87 DILK---EKWSALYDVRTILLSIQSLLGEPNIDSP-LNTHAAE---------LWK-NPTAFKKYLQETYSKQV  145 (146)
T ss_dssp             GGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HTT-SHHHHHHHHHHHHHTTC
T ss_pred             cccc---ccCCCCcCHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------Hhh-CHHHHHHHHHHHHHccC
Confidence            9987   8999999999999999999999999997 6666654         784 99999999999999986

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=2.2e-37  Score=250.61  Aligned_cols=143  Identities=24%  Similarity=0.457  Sum_probs=128.2

Q ss_pred             CccchhhhhCCCCCEEEeeC-CCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEe
Q 027085            2 GNGCFYHVQEPVSHVVARPS-PNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLC   78 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p~-~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iC   78 (228)
                      +++.-.+++++++||++.+. ++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+  |+||+.+|.||
T Consensus         6 ~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~vc   85 (161)
T d1pzva_           6 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVC   85 (161)
T ss_dssp             HHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTTSBBC
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCCCccc
Confidence            34566789999999999985 5689999999999999999999999999999999999999999997  78899999999


Q ss_pred             ccCCCCC----------CCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 027085           79 LSMSDFH----------PESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV  148 (228)
Q Consensus        79 l~~L~~~----------~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v  148 (228)
                      +++|+..          .+.|+|+++|.+||++|+++|.+|+++++ +|.++|+         +|.+|++.|.++|++||
T Consensus        86 l~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p-~n~eaa~---------l~~~~~~~f~~~a~~~v  155 (161)
T d1pzva_          86 ISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESP-ANVDAAK---------MQRENYAEFKKKVAQCV  155 (161)
T ss_dssp             CGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSC-SCHHHHH---------HHHTCHHHHHHHHHHHH
T ss_pred             hhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHH
Confidence            9998621          24699999999999999999999999997 6766665         89999999999999999


Q ss_pred             HHHHhh
Q 027085          149 EKYNEQ  154 (228)
Q Consensus       149 ~k~a~~  154 (228)
                      +++.++
T Consensus       156 ~k~~e~  161 (161)
T d1pzva_         156 RRSQEE  161 (161)
T ss_dssp             HHHTTC
T ss_pred             HHHhcC
Confidence            998753

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=5.6e-37  Score=247.27  Aligned_cols=138  Identities=19%  Similarity=0.412  Sum_probs=126.2

Q ss_pred             chhhhhCCCCCEEEeeCCC-----CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeE
Q 027085            5 CFYHVQEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKL   77 (228)
Q Consensus         5 ~~~l~~~p~~gi~v~p~~~-----dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~i   77 (228)
                      --.++++++.||++.|.++     |+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||  |+||+.+|.+
T Consensus        11 ~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~i   90 (156)
T d2uyza1          11 RKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTV   90 (156)
T ss_dssp             HHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBB
T ss_pred             HHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccccccccccee
Confidence            3467899999999999765     89999999999999999999999999999999999999999996  7889999999


Q ss_pred             eccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           78 CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        78 Cl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      |+++|.. .++|+|+++|.+||.+|+++|.+|+++++ .|.++|+         +|.+|++.|.+.||+|++|||.
T Consensus        91 cl~~l~~-~~~W~p~~ti~~il~~i~~ll~~p~~~~p-~n~eaa~---------~~~~~~~~f~~~vr~~~~k~A~  155 (156)
T d2uyza1          91 SLSILEE-DKDWRPAITIKQILLGIQELLNEPNIQDP-AQAEAYT---------IYCQNRVEYEKRVRAQAKKFAP  155 (156)
T ss_dssp             CCGGGCT-TTTCCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHTCC
T ss_pred             eecccCc-ccccCCcccHHHHHHHHHHHhcCCCCCCc-cCHHHHH---------HHHHCHHHHHHHHHHHHHHHCC
Confidence            9999852 26899999999999999999999999987 6666664         8999999999999999999985

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=6.7e-37  Score=248.33  Aligned_cols=140  Identities=24%  Similarity=0.515  Sum_probs=127.7

Q ss_pred             ccchhhhhCCCCCEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      .+.-.+++++++||++.| +++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|+  |+||+.+|+||+
T Consensus        10 ~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~vCl   89 (164)
T d2ucza_          10 KELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCI   89 (164)
T ss_dssp             HHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCC
T ss_pred             HHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceEcCCCCeee
Confidence            455678899999999998 56799999999999999999999999999999999999999999996  777999999999


Q ss_pred             cCCCC----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 027085           80 SMSDF----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVE  149 (228)
Q Consensus        80 ~~L~~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~  149 (228)
                      ++|+.          +++.|+|+++|.+||.+|+++|.+|+++++ +|.++|+         +|.+|+++|.++||+++.
T Consensus        90 ~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p-~n~eaa~---------l~~~~~~~f~~~~r~~~~  159 (164)
T d2ucza_          90 SILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESG-ANIDACI---------LWRDNRPEFERQVKLSIL  159 (164)
T ss_dssp             GGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGC-CCHHHHH---------HHHTTHHHHHHHHHHHHH
T ss_pred             ccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHH
Confidence            99852          246899999999999999999999999998 6777765         899999999999999999


Q ss_pred             HHH
Q 027085          150 KYN  152 (228)
Q Consensus       150 k~a  152 (228)
                      |+.
T Consensus       160 k~~  162 (164)
T d2ucza_         160 KSL  162 (164)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            975

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=7e-37  Score=246.83  Aligned_cols=148  Identities=55%  Similarity=1.061  Sum_probs=124.5

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeEeccCC
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMS   82 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~iCl~~L   82 (228)
                      ++.-.++++|++|+++.|+++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|||+|++.+|.+|+.++
T Consensus         8 kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g~~~~~~l   87 (157)
T d2f4wa1           8 QDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSIT   87 (157)
T ss_dssp             HHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTSCBC----
T ss_pred             HHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCCCeeeeec
Confidence            45567899999999999999999999999999999999999999999999999999999999999888899999999988


Q ss_pred             CCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Q 027085           83 DFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEK  150 (228)
Q Consensus        83 ~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k  150 (228)
                      ++.+++|+|+++|.+||++|++||.+|+|+.+.+.+..+.+++++..+..|+++.+.|.+.+++.+++
T Consensus        88 ~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~~~~~ee  155 (157)
T d2f4wa1          88 DFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEE  155 (157)
T ss_dssp             ------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH
T ss_pred             cccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77779999999999999999999999999988888888877778877777777777777666666654

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=1.3e-36  Score=245.10  Aligned_cols=137  Identities=21%  Similarity=0.471  Sum_probs=125.3

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS   80 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~   80 (228)
                      .+.-.+++++++||++.|+++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |+||+.+|.||++
T Consensus        16 kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~icl~   95 (156)
T d2e2ca_          16 QELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLD   95 (156)
T ss_dssp             HHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCG
T ss_pred             HHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCCCCCCcccc
Confidence            45567888999999999999999999999999999999999999999999999999999999995  6779999999999


Q ss_pred             CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      +|.   +.|+|+++|.+||.+|+++|.+|+++++ +|.++|+         +|+ |+.+|.+++++.+++...
T Consensus        96 ~l~---~~Wsp~~~i~~vl~~i~~ll~~P~~~~p-~n~~aa~---------l~~-n~~~y~k~~~e~~~~~~~  154 (156)
T d2e2ca_          96 ILK---ENWTASYDVRTILLSLQSLLGEPNNASP-LNAQAAD---------MWS-NQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             GGT---TTCCTTCCHHHHHHHHHHHTTSCCCSSC-SCHHHHH---------HTT-CHHHHHHHHHHHHHHHHH
T ss_pred             ccC---CCCCCcccHHHHHHHHHHHHhCCCCCCh-hhHHHHH---------HHH-CHHHHHHHHHHHHHHHhc
Confidence            997   8999999999999999999999999997 6666664         785 667899999999988764

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=7.7e-37  Score=244.39  Aligned_cols=139  Identities=22%  Similarity=0.448  Sum_probs=125.6

Q ss_pred             CccchhhhhCCCCCEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecC-CCeE
Q 027085            2 GNGCFYHVQEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT-QKKL   77 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~-~G~i   77 (228)
                      +++.-.+++++++||++.+ +++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |+||+. +|.+
T Consensus         7 ~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~~~~~   86 (149)
T d1fzya_           7 MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI   86 (149)
T ss_dssp             HHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCCB
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccCCccee
Confidence            3455678899999999975 67899999999999999999999999999999999999999999995  666776 6789


Q ss_pred             eccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           78 CLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        78 Cl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      |+++++   +.|+|+++|.+||.+|+++|.+|+++++ +|.++|+         +|.+|++.|.++||+||++||.
T Consensus        87 ~~~~~~---~~W~p~~ti~~il~~i~~ll~~p~~~~p-~n~eaa~---------~~~~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_          87 CLDILK---NAWSPVITLKSALISLQALLQSPEPNDP-QDAEVAQ---------HYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             CCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHCC
T ss_pred             echhhc---ccCCCcCCHHHHHHHHHHHHhCCCCCCh-hHHHHHH---------HHHHCHHHHHHHHHHHHHHhcC
Confidence            998876   9999999999999999999999999997 6777665         8999999999999999999983

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=1.7e-36  Score=245.68  Aligned_cols=131  Identities=24%  Similarity=0.533  Sum_probs=117.2

Q ss_pred             hCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Ccee-cCCCeEeccCCCCCC
Q 027085           10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRF-MTQKKLCLSMSDFHP   86 (228)
Q Consensus        10 ~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v-~~~G~iCl~~L~~~~   86 (228)
                      .++..|+++.+.++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+|.||  |+++ +.+|.||++++.   
T Consensus        28 ~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPni~~~~G~icl~~l~---  104 (161)
T d2f4za1          28 HSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK---  104 (161)
T ss_dssp             -----CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT---
T ss_pred             cCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEEecCCCCCCceECCCCCeecCccc---
Confidence            4567899999999999999999999999999999999999999999999999999995  4544 567999999987   


Q ss_pred             CCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085           87 ESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE  153 (228)
Q Consensus        87 ~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~  153 (228)
                      +.|+|+++|.+||.+|+++|.+|+++++ .|.++|+         +|.+|++.|.++||+||++||+
T Consensus       105 ~~W~p~~si~~iL~~I~~ll~~P~~~dp-~n~eaa~---------l~~~d~~~y~~~v~~~t~~~a~  161 (161)
T d2f4za1         105 HEWSPALTIRTALLSIQAMLADPVPTDP-QDAEVAK---------MMIENHPLFVQTAKLWTETFAK  161 (161)
T ss_dssp             TTCCTTSCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCcccHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHHHHHHHhC
Confidence            8899999999999999999999999997 6666665         8999999999999999999984

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-36  Score=243.22  Aligned_cols=128  Identities=19%  Similarity=0.454  Sum_probs=119.9

Q ss_pred             CCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecC-CCeEeccCCCCCCCC
Q 027085           12 PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT-QKKLCLSMSDFHPES   88 (228)
Q Consensus        12 p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~-~G~iCl~~L~~~~~~   88 (228)
                      ...+|++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.||  |+||+. +|.||++++.   +.
T Consensus        23 ~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~~g~ic~~~~~---~~   99 (154)
T d2bepa1          23 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQ   99 (154)
T ss_dssp             HTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT---TT
T ss_pred             CCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCCCCCeeCCCCcccccccc---cc
Confidence            56799999999999999999999999999999999999999999999999999996  677886 7999999987   99


Q ss_pred             CCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085           89 WNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN  152 (228)
Q Consensus        89 W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a  152 (228)
                      |+|+++|.+||.+|+++|.+|+++++ .|.++|+         +|.+|++.|.++||+||+|||
T Consensus       100 W~p~~~i~~il~~i~~ll~~p~~~~p-~n~eaa~---------l~~~~~~~f~~~a~~~t~k~A  153 (154)
T d2bepa1         100 WAAAMTLRTVLLSLQALLAAAEPDDP-QDAVVAN---------QYKQNPEMFKQTARLWAHVYA  153 (154)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSCCTTSC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCcCCHHHHHHHHHHHHcCCCCCCc-hHHHHHH---------HHHHCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999997 6666654         899999999999999999998

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=242.89  Aligned_cols=140  Identities=21%  Similarity=0.404  Sum_probs=125.9

Q ss_pred             ccchhhhhCCCCCEEEeeC-CCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPS-PNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~-~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.+. ++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.||  |+||+.+|.||+
T Consensus         7 kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~G~icl   85 (150)
T d1wzva1           7 KELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICL   85 (150)
T ss_dssp             HHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCC
T ss_pred             HHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECCCCCccc
Confidence            3445688999999999886 56899999866 8999999999999999999999999999999997  788999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ  155 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~  155 (228)
                      ++|.  ++.|+|+++|.+||.+|+++|.+|+++++ +|.++++         +|.+|++.|.++||+|+++||.++
T Consensus        86 ~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~p-~n~eaa~---------~~~~d~~~f~~~a~~~~~kya~~~  149 (150)
T d1wzva1          86 PIIS--SENWKPCTKTCQVLEALNVLVNRPNIREP-LRMDLAD---------LLTQNPELFRKNAEEFTLRFGVDR  149 (150)
T ss_dssp             GGGC--TTTCCTTCCHHHHHHHHHHHHHSCCSSSC-SSHHHHH---------HHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred             cccc--ccCCCchhHHHHHHHHHHHHHhCCCCCCc-hHHHHHH---------HHHHCHHHHHHHHHHHHHHhcccC
Confidence            9985  37999999999999999999999999987 6666654         899999999999999999999653

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=242.18  Aligned_cols=136  Identities=21%  Similarity=0.459  Sum_probs=123.6

Q ss_pred             ccchhhhhCCCCCEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl   79 (228)
                      ++.-.++++++.|+.+.+ +++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+  |+||+.+|.||+
T Consensus         6 kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~icl   84 (144)
T d1c4zd_           6 KELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCL   84 (144)
T ss_dssp             HHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCC
T ss_pred             HHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCCcccc
Confidence            345567889999998776 577999999998 9999999999999999999999999999999997  788999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY  151 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~  151 (228)
                      ++|+  .+.|+|.+++.+||.+|+++|.+|+++++ ++.++++         +|.+|++.|.++||+||+||
T Consensus        85 ~~l~--~~~w~p~~~i~~il~~i~~ll~~p~~~~p-~n~~aa~---------~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          85 PVIS--AENWKPATKTDQVIQSLIALVNDPQPEHP-LRADLAE---------EYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             TTTS--SSSCCTTCCHHHHHHHHHHHHHSCCCSSC-SCHHHHH---------HHHTCSSTTHHHHHHHHTTC
T ss_pred             cccc--CCCCCCcccHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHHHHHHHHHHHHHHHhC
Confidence            9987  46899999999999999999999999987 6666654         89999999999999999986

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=240.53  Aligned_cols=134  Identities=23%  Similarity=0.448  Sum_probs=121.8

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G~iCl   79 (228)
                      .+.-.+++++++||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  |++|+ .+|+||+
T Consensus        11 kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~iC~   90 (148)
T d1yrva1          11 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCI   90 (148)
T ss_dssp             HHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCC
T ss_pred             HHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCceecCcccccc
Confidence            34556788999999999999999999999999999999999999999999999999999999996  67788 5799999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHH
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEY  147 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~  147 (228)
                      ++|+ ..++|+|+++|.+||.+|+++|.+|+++++ +|.++|+         +|.+|++.|.++||+|
T Consensus        91 ~~l~-~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p-~n~eaa~---------ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          91 DFLD-NPEKWNTNYTLSSILLALQVMLSNPVLENP-VNLEAAR---------ILVKDESLYRTILRLF  147 (148)
T ss_dssp             HHHH-CGGGCCTTCCHHHHHHHHHHHHTSCCTTSC-SCHHHHH---------HHHSCHHHHHHHHHHH
T ss_pred             cccC-chhhcCccccHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHhh
Confidence            9985 236899999999999999999999999987 6766665         8999999999999987

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=6.6e-34  Score=229.69  Aligned_cols=141  Identities=21%  Similarity=0.462  Sum_probs=121.4

Q ss_pred             hhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecC-CCeEeccCC
Q 027085            6 FYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT-QKKLCLSMS   82 (228)
Q Consensus         6 ~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~-~G~iCl~~L   82 (228)
                      ..|++++.   .+.++ ||+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+  |+||+. +|.||+++|
T Consensus        10 ~~l~~~~~---~~~~~-d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G~vcl~il   85 (158)
T d1yf9a1          10 MRLCNSTR---KVYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVI   85 (158)
T ss_dssp             HHHHSSSS---CEEEC-SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHH
T ss_pred             HHHhcCCC---cCCCC-CCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCccccccccc
Confidence            34555443   25564 799999999999999999999999999999999999999999996  666765 799999999


Q ss_pred             CCCCCCCCCCcchHHHHHh-hhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhhhhhh
Q 027085           83 DFHPESWNPMWSVSSILTG-LLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRV  161 (228)
Q Consensus        83 ~~~~~~W~p~~~i~~vL~~-i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~~~~~  161 (228)
                      .   ++|+|.+++.++|.. |+.||.+|+++++ +|.++|+         +|.+|++.|.++||+||++||..++..+..
T Consensus        86 ~---~~W~p~~~i~~il~~~i~~ll~~P~~~~p-~N~eaa~---------l~~~n~~~f~~~~k~~~~k~a~~~~~~~~~  152 (158)
T d1yf9a1          86 N---QTWTPMYQLENIFDVFLPQLLRYPNPSDP-LNVQAAH---------LLHADRVGFDALLREHVSTHATPQKALESI  152 (158)
T ss_dssp             H---HHCCTTCCTHHHHHTHHHHHHHSCCSSCC-SCHHHHH---------HHHHCHHHHHHHHHHHHHHHCCHHHHHHTS
T ss_pred             c---cccCchHhhhhHHHHHHHHHhcCCCCCcc-hhHHHHH---------HHHHCHHHHHHHHHHHHHHHCChhhhcccC
Confidence            7   899999999999976 6678899999987 6777665         899999999999999999999887776655


Q ss_pred             cc
Q 027085          162 SE  163 (228)
Q Consensus       162 ~~  163 (228)
                      ++
T Consensus       153 ~~  154 (158)
T d1yf9a1         153 PE  154 (158)
T ss_dssp             CG
T ss_pred             Cc
Confidence            54

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.97  E-value=7.4e-33  Score=223.20  Aligned_cols=125  Identities=19%  Similarity=0.397  Sum_probs=112.1

Q ss_pred             CCCEEEe-eCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCCCCCCCC
Q 027085           13 VSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESW   89 (228)
Q Consensus        13 ~~gi~v~-p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~~~~~~W   89 (228)
                      ++++.+. ++++|+++|+++| ||.+|||+||+|+++|.||++||++||+|+|.|+  |+||+.+|.||++++.   ++|
T Consensus        18 ~~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~~G~ic~~~~~---~~W   93 (157)
T d1y8xa1          18 PKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR---EDW   93 (157)
T ss_dssp             CTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGT---TTC
T ss_pred             CCCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccccccceeeeeecc---cCC
Confidence            3455554 4668999999999 8999999999999999999999999999999996  7789999999999987   899


Q ss_pred             CCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085           90 NPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY  151 (228)
Q Consensus        90 ~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~  151 (228)
                      +|+++|.+||.+|+++|.+|+++++ +|.++|+         +|.+|++.|.++|+++++-+
T Consensus        94 ~p~~~i~~il~~I~~ll~~Pn~~~p-~n~eaa~---------l~~~~~~~f~~~v~~~~~~~  145 (157)
T d1y8xa1          94 KPVLTINSIIYGLQYLFLEPNPEDP-LNKEAAE---------VLQNNRRLFEQNVQRSMRGG  145 (157)
T ss_dssp             CTTCCHHHHHHHHHHHHHSCCCSSC-SCHHHHH---------HHHSCHHHHHHHHHHHHHSE
T ss_pred             CCCCcHHHHHHHHHHHHcCCCCcCh-HHHHHHH---------HHHHCHHHHHHHHHHHHcCC
Confidence            9999999999999999999999987 6666654         89999999999999998743

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.97  E-value=8e-32  Score=209.34  Aligned_cols=108  Identities=25%  Similarity=0.543  Sum_probs=98.3

Q ss_pred             CccchhhhhCCCCCEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEe
Q 027085            2 GNGCFYHVQEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLC   78 (228)
Q Consensus         2 ~~~~~~l~~~p~~gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iC   78 (228)
                      +++.-.+++++++||.+.+ +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||  |+||+.+|.||
T Consensus         5 ~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~iC   84 (125)
T d2awfa1           5 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVC   84 (125)
T ss_dssp             HHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBC
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCCEEE
Confidence            3566678999999999987 56789999999999999999999999999999999999999999997  78899999999


Q ss_pred             ccCCCC----------CCCCCCCCcchHHHHHhhhccccCC
Q 027085           79 LSMSDF----------HPESWNPMWSVSSILTGLLSFMMDT  109 (228)
Q Consensus        79 l~~L~~----------~~~~W~p~~~i~~vL~~i~~ll~~p  109 (228)
                      +++|+.          ..++|+|++|+++||++|++||.+|
T Consensus        85 l~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          85 ISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             CGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             eccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            999852          2378999999999999999999875

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.97  E-value=8.4e-32  Score=204.71  Aligned_cols=102  Identities=25%  Similarity=0.509  Sum_probs=95.8

Q ss_pred             ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEec
Q 027085            3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLCL   79 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iCl   79 (228)
                      ++.-.+++++++||++.++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+   |+|++.+|+||+
T Consensus         5 kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~iCl   84 (109)
T d2fo3a1           5 KELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL   84 (109)
T ss_dssp             HHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCC
T ss_pred             HHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCCeEEe
Confidence            45556889999999999999999999999999999999999999999999999999999999984   677999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhcccc
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMM  107 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~  107 (228)
                      ++|+   ++|+|++||++||.+|++||.
T Consensus        85 ~il~---~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          85 SLLG---DDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             GGGT---TTCCTTCCHHHHHHHHHHHHC
T ss_pred             eccc---CCCCccCCHHHHHHHHHHHhC
Confidence            9998   899999999999999999874

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=206.21  Aligned_cols=102  Identities=24%  Similarity=0.516  Sum_probs=94.2

Q ss_pred             ccchhhhhCCCCCEEEee--CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC----CceecCCCe
Q 027085            3 NGCFYHVQEPVSHVVARP--SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP----NGRFMTQKK   76 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p--~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP----n~~v~~~G~   76 (228)
                      +|.-.+++++++|+++.+  .++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+    |+||+.+|+
T Consensus        10 kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv~~~G~   89 (117)
T d2a7la1          10 KELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGH   89 (117)
T ss_dssp             HHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCB
T ss_pred             HHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccCcCCCe
Confidence            455678899999999875  56799999999999999999999999999999999999999999984    688999999


Q ss_pred             EeccCCCCCCCCCCCCcchHHHHHhhhcccc
Q 027085           77 LCLSMSDFHPESWNPMWSVSSILTGLLSFMM  107 (228)
Q Consensus        77 iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~  107 (228)
                      ||+++|+   ++|+|++||++||.+|++||.
T Consensus        90 iCl~~l~---~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          90 ICLSILT---EDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             BCCGGGT---TTCCTTSCHHHHHHHHHHHTC
T ss_pred             EEeecCc---CCCCCcCcHHHHHHHHHHHhC
Confidence            9999998   899999999999999999884

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3e-28  Score=196.89  Aligned_cols=129  Identities=12%  Similarity=0.338  Sum_probs=102.5

Q ss_pred             hhhhCCC--CC-EEEeeCCCCceEEEEEEEc-CCCCCCCCcE-----------EEEEEEcCCCCCCCCCceeecCC--Cc
Q 027085            7 YHVQEPV--SH-VVARPSPNDILEWHYVLEG-SNGTPFAGGY-----------YYGKIKFPPEYPYKPPGILMITP--NG   69 (228)
Q Consensus         7 ~l~~~p~--~g-i~v~p~~~dl~~w~~~I~G-p~~TpYegG~-----------f~~~i~fp~~YP~~pP~v~F~tP--n~   69 (228)
                      .+++++.  .| +.+.+.++|+++|++.|.| |++|||+||.           |+++|.||++||++||+|+|.||  |+
T Consensus        15 ~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~PP~v~f~t~i~hp   94 (162)
T d1zuoa1          15 DIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSG   94 (162)
T ss_dssp             HHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEES
T ss_pred             HHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhcceEEEEEEeecc
Confidence            3444443  34 5577889999999999999 8999999987           99999999999999999999997  33


Q ss_pred             -eecCCCeEeccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHH
Q 027085           70 -RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPE  146 (228)
Q Consensus        70 -~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~  146 (228)
                       +++.+|.||+++|.  .++|+|++||++||.+|+++|.+++|..++..+.++.         .+.++++.|.+.||.
T Consensus        95 n~~~~~G~iCl~iL~--~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y---------~~~~~~~~y~~~~~~  161 (162)
T d1zuoa1          95 GYVLGGGALCMELLT--KQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQY---------NLARAQQSYNSIVQI  161 (162)
T ss_dssp             TTBCGGGBBCCGGGS--TTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCC---------CHHHHHHHHHHHHHH
T ss_pred             ccccCCceeeccccc--CCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHH---------HHHHhHHHHHHHHhh
Confidence             36888999999985  3789999999999999999999988865544333221         122345668887764

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.93  E-value=3.6e-27  Score=186.20  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=91.9

Q ss_pred             ccchhhhhCCCCCEEEeeC----CCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCC-C
Q 027085            3 NGCFYHVQEPVSHVVARPS----PNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQ-K   75 (228)
Q Consensus         3 ~~~~~l~~~p~~gi~v~p~----~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~-G   75 (228)
                      ++.-.++|++++|+.+.+.    ++|+++|+++|.||.+|||+||+|+++|.||++||++||+|+|.||  |++|+.. |
T Consensus        12 kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnV~~~~g   91 (139)
T d2a4da1          12 EELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNG   91 (139)
T ss_dssp             HHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTC
T ss_pred             HHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccccCcCCCC
Confidence            3445678899998776653    3479999999999999999999999999999999999999999996  5666655 6


Q ss_pred             eEeccCCCCCCCCCCCCcchHHHHHhhhccccCC-CCCCC
Q 027085           76 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDT-SPTTG  114 (228)
Q Consensus        76 ~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p-~p~~~  114 (228)
                      .+|.+.|... ++|+|++||++||.+|+++|.+| |++++
T Consensus        92 ~~~~~~l~~l-~~Wsp~~ti~~iL~~i~slL~~peN~~~p  130 (139)
T d2a4da1          92 VVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLP  130 (139)
T ss_dssp             BBCGGGSHHH-HTCCTTCCHHHHHHHHHHHHTSTTTTTCC
T ss_pred             EEcceecCcc-cCCCccCcHHHHHHHHHHHHCCCCCCCCC
Confidence            6766655311 47999999999999999999887 56665

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.93  E-value=3.8e-27  Score=185.43  Aligned_cols=106  Identities=14%  Similarity=0.215  Sum_probs=87.3

Q ss_pred             hhhhhCC-CCCEEEeeCCC---CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--Cceec-CCCeEe
Q 027085            6 FYHVQEP-VSHVVARPSPN---DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFM-TQKKLC   78 (228)
Q Consensus         6 ~~l~~~p-~~gi~v~p~~~---dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~-~~G~iC   78 (228)
                      -.++|+. +.++.+...++   |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.||  |+||+ .+|.||
T Consensus        14 ~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~HpnV~~~~G~ic   93 (136)
T d1jatb_          14 EKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQ   93 (136)
T ss_dssp             HHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBC
T ss_pred             HHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccccccccCCCeEE
Confidence            3456664 45566655433   49999999999999999999999999999999999999999996  66777 459999


Q ss_pred             ccCCCCCCCCCCCCcchHHHHHhhhccccCCCCCC
Q 027085           79 LSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTT  113 (228)
Q Consensus        79 l~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~  113 (228)
                      ++++.  .++|+|++||++||++|+++|.+|+...
T Consensus        94 l~~l~--~~~Wsp~~ti~~IL~~i~~lL~~P~n~~  126 (136)
T d1jatb_          94 TDFHT--LRDWKRAYTMETLLLDLRKEMATPANKK  126 (136)
T ss_dssp             TTSHH--HHTCCTTCCHHHHHHHHHHHHTSHHHHT
T ss_pred             CCCCc--ccCcCccCcHHHHHHHHHHHHcCCCCCC
Confidence            99874  2689999999999999999999875433

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-18  Score=135.68  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=82.5

Q ss_pred             CCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEE--EEEcCCCCCCCCCceeecC-------CCceecCCCeEeccCCCC
Q 027085           14 SHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYG--KIKFPPEYPYKPPGILMIT-------PNGRFMTQKKLCLSMSDF   84 (228)
Q Consensus        14 ~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~--~i~fp~~YP~~pP~v~F~t-------Pn~~v~~~G~iCl~~L~~   84 (228)
                      ++..+...+|+..+|.+.|.|+.+++|+||.|.+  .|.||.+||++||.|.|.+       +|.+|+.+|+||+++|+ 
T Consensus        35 p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~~G~V~lp~L~-  113 (141)
T d1s1qa_          35 PVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLH-  113 (141)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCTTCBBCCHHHH-
T ss_pred             CccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECCCCCCcchhhc-
Confidence            5666778889999999999999999999999999  5558999999999998875       37789999999999996 


Q ss_pred             CCCCCCCCcchHHHHHhhhccccCCCC
Q 027085           85 HPESWNPMWSVSSILTGLLSFMMDTSP  111 (228)
Q Consensus        85 ~~~~W~p~~~i~~vL~~i~~ll~~p~p  111 (228)
                        +.|.+.+++.+++..|+.+|.+..|
T Consensus       114 --~W~~~~s~L~~ll~~L~~~f~~e~P  138 (141)
T d1s1qa_         114 --EWKHPQSDLLGLIQVMIVVFGDEPP  138 (141)
T ss_dssp             --TCCTTTCCHHHHHHHHHHHHHHSCS
T ss_pred             --CCCcccccHHHHHHHHHHHhCCCCC
Confidence              5556678999999999999987544

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.2e-15  Score=121.12  Aligned_cols=93  Identities=14%  Similarity=0.113  Sum_probs=74.9

Q ss_pred             EEEeeCCCCceEEEEEEEcCCCCCCCCcE---EEEEEEcCCCCCCCCCceeecCC-------------CceecCCCeEec
Q 027085           16 VVARPSPNDILEWHYVLEGSNGTPFAGGY---YYGKIKFPPEYPYKPPGILMITP-------------NGRFMTQKKLCL   79 (228)
Q Consensus        16 i~v~p~~~dl~~w~~~I~Gp~~TpYegG~---f~~~i~fp~~YP~~pP~v~F~tP-------------n~~v~~~G~iCl   79 (228)
                      ..+...+|....+.+.|.|.-+++|+||.   |.+.|.||++||+.||.++|.++             |++|+.+|+||+
T Consensus        42 ~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~~G~V~l  121 (152)
T d1uzxa_          42 TRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIAL  121 (152)
T ss_dssp             EEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCSCC----CGGGGGBCTTSCBCC
T ss_pred             cceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccccCCCcccccCCCCCCCCcEeh
Confidence            33444566678888889999999999996   68888899999999999999752             678999999999


Q ss_pred             cCCCCCCCCCCCCcchHHHHHhhhccccCCCC
Q 027085           80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSP  111 (228)
Q Consensus        80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p  111 (228)
                      ++|+   +.|.+..+|.++|..|+++|.++.+
T Consensus       122 p~L~---~W~~~~s~L~~ll~~l~~~f~~~P~  150 (152)
T d1uzxa_         122 PILH---CWDPAAMNLIMVVQELMSLLHEPPQ  150 (152)
T ss_dssp             HHHH---SCCTTTCCHHHHHHHHHTGGGSCCC
T ss_pred             HHhc---CCCCccCcHHHHHHHHHHHhcCCCC
Confidence            9997   6677899999999999999988633

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.027  Score=42.23  Aligned_cols=53  Identities=21%  Similarity=0.540  Sum_probs=36.1

Q ss_pred             EEEEEEcCCCCCCCCCceeecC---CCceecCCCeEeccCCCCCCCCC---CCCcchHHHH
Q 027085           45 YYGKIKFPPEYPYKPPGILMIT---PNGRFMTQKKLCLSMSDFHPESW---NPMWSVSSIL   99 (228)
Q Consensus        45 f~~~i~fp~~YP~~pP~v~F~t---Pn~~v~~~G~iCl~~L~~~~~~W---~p~~~i~~vL   99 (228)
                      |.+++.+|..||..||.|..-.   .-.-.|..|+||++. .| ..-|   .|.+.|.+.|
T Consensus        78 Fd~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~-HF-kPLWarN~PkfGIaHal  136 (162)
T d2in1a1          78 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTD-HF-KPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             EEEEEECCTTTTTSCCCCBCGGGSSSCSSSCGGGBCCCCT-TS-HHHHHTTTTSCCHHHHH
T ss_pred             EEEEeccCCCCCCCCcceeccccCCchhhhhcCceeeccc-cc-hhhhhhcCCchhHHHHH
Confidence            6677889999999999986543   112257789999975 12 1345   4566676665

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.4  Score=33.50  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=21.2

Q ss_pred             cEEEEEEEcCCCCCCCCCceeecCC
Q 027085           43 GYYYGKIKFPPEYPYKPPGILMITP   67 (228)
Q Consensus        43 G~f~~~i~fp~~YP~~pP~v~F~tP   67 (228)
                      ....+.+.+|.+||..+|.+.+.++
T Consensus        52 ~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1          52 VCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             eEEEEEEEcCCCCCCCCCcEEeecc
Confidence            4688889999999999999987653

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.02  E-value=0.57  Score=33.51  Aligned_cols=26  Identities=19%  Similarity=0.232  Sum_probs=21.1

Q ss_pred             CCcEEEEEEEcCCCCCCCCCceeecC
Q 027085           41 AGGYYYGKIKFPPEYPYKPPGILMIT   66 (228)
Q Consensus        41 egG~f~~~i~fp~~YP~~pP~v~F~t   66 (228)
                      ......+.+.+|.+||..+|.|...+
T Consensus        64 ~~~~l~L~~~lP~~YP~~~P~i~l~~   89 (140)
T d2daxa1          64 KMAMFSLACILPFKYPAVLPEITVRS   89 (140)
T ss_dssp             CEEEEEEEEEECSSTTSSCCCCEEEC
T ss_pred             cCceEEEEEEecCcCCCcCCceeccC
Confidence            34568899999999999999886543