Citrus Sinensis ID: 027087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MAAYQAPVCHLLLSGSQSEAQRRNPIKTPKTPLQLPLTSRRLLFFSLPFSSLLLLPNNRKITNKPSSSDAFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHcccHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccEEcHccccEEEcccHHHHHHHcHccEEEEccccHHHHHHccHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maayqapvchlllsgsqseaqrrnpiktpktplqlpltsrrllffslpfssllllpnnrkitnkpsssdafaatydpltqaEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLldphytdlsyvkdtkhwppslvSSLRHFITLS
Flexible Loop (DISEMBL)
MAAYQAPVCHLLlsgsqseaqrrnpiktpktplqlplTSRRLLFFSLPFSSLLLLPNNRKITNKPSSSDAFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYvkdtkhwppslvsslrhfitls
Low Complexity Region (SEG)
MAAYQAPVCHLLLSGSQSEAQRRNPIKTPKTPLQlpltsrrllffslpfssllllpNNRKITNKPSSSDAFAATYDPLTQAEKdasaavssrvsdaLELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS
Disordered region (IsUnstruct)
*******VCHLL***********************PLTSRRLLFFSLPFSSLLLLPN****************************************ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFI***
Disordered Region (DISOPRED)
**********************************LPLTSRRLLFFSLPFSSLLLLPNNRKITNKPSSSDAFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS
Disordered Region (DISEMBL)
MAAYQAPVCHLLLSGSQSEAQRRNPIKTPKTPLQLPLTSRRLLFFSLPFSSLLLLPNNRKITNKPSSSDAFAATYDPLTQ*************SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS
Disordered Region (DISPRO)
***YQAPVCHLLLSGSQSE***RNPIKTPKTPLQLPLTSRRLLFFSLPFSSLLLLPNNRKITNKPSSSDAFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAYQAPVCHLLLSGSQSEAQRRNPIKTPKTPLQLPLTSRRLLFFSLPFSSLLLLPNNRKITNKPSSSDAFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
449459230	234	PREDICTED: uncharacterized protein LOC10	0.846	0.824	0.729	2e-77
255571385	227	conserved hypothetical protein [Ricinus	0.951	0.955	0.666	3e-77
388522505	229	unknown [Medicago truncatula]	0.942	0.938	0.653	2e-72
357519977	229	hypothetical protein MTR_8g093750 [Medic	0.956	0.951	0.653	2e-72
224080975	230	predicted protein [Populus trichocarpa]	0.714	0.708	0.828	2e-69
388495718	219	unknown [Lotus japonicus]	0.697	0.726	0.805	5e-69
225431627	217	PREDICTED: uncharacterized protein LOC10	0.938	0.986	0.640	2e-67
351723301	231	uncharacterized protein LOC100500132 [Gl	0.938	0.926	0.636	7e-67
357155030	214	PREDICTED: uncharacterized protein LOC10	0.675	0.719	0.759	2e-57
242083050	238	hypothetical protein SORBIDRAFT_08g00539	0.662	0.634	0.761	1e-55

>gi|449459230|ref|XP_004147349.1| PREDICTED: uncharacterized protein LOC101214268 [Cucumis sativus] gi|449513305|ref|XP_004164290.1| PREDICTED: uncharacterized protein LOC101227824 [Cucumis sativus]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/203 (72%), Positives = 173/203 (85%), Gaps = 10/203 (4%)

Query: 32  PLQLP----LTSRRLLFFSLPFSSLLLLPNNRKITNKP-SSSDAFAA-TYDPLTQAEKDA 85
           PL  P    L +RRLL FSLP ++  LLP    I   P   S +FA  ++DP++++EKDA
Sbjct: 36  PLSFPNHNSLPTRRLLLFSLPIATAFLLP----IPGNPIQPSSSFAVESFDPVSRSEKDA 91

Query: 86  SAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE 145
           SAA+S RVS+A+ELL+KGRELQA+GDFN+AL YFT V++ YKDFAFS+YARVGRALALYE
Sbjct: 92  SAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYE 151

Query: 146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205
           +GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQFTIATLLDPHY D+S
Sbjct: 152 IGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFTIATLLDPHYVDIS 211

Query: 206 YVKDTKHWPPSLVSSLRHFITLS 228
           YVK+TKHWPPSL+SSL+HF+TLS
Sbjct: 212 YVKETKHWPPSLISSLQHFLTLS 234

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571385|ref|XP_002526641.1| conserved hypothetical protein [Ricinus communis] gi|223534033|gb|EEF35753.1| conserved hypothetical protein [Ricinus communis]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 156/234 (66%), Positives = 173/234 (73%), Gaps = 17/234 (7%)

Query: 1   MAAYQAPVCHLLLSGSQSEAQRRNPIKTPKTPLQLPLTSRRLLFFSLPFSSLLLLPNNRK 60
           M A +AP+CHL    S S    RN   T           RR   FSLP  +         
Sbjct: 5   MGACKAPICHLQRPSSPSTPNPRNSNST-----------RRFFLFSLPLCATCATTTTTL 53

Query: 61  ITNKPSSSD------AFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNK 114
           +  + S +       A A +YDP++QAEKDASA  S RVS+A+ LLEKGRELQA GDF+ 
Sbjct: 54  VLTQSSPTVKVEPFLALAESYDPVSQAEKDASANKSQRVSEAIGLLEKGRELQAQGDFSA 113

Query: 115 ALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174
           AL YFTLVVENYKDFAFSEYARVGRALALYEVGD++EAIAEMEDVSISLKGYPEVHAALA
Sbjct: 114 ALPYFTLVVENYKDFAFSEYARVGRALALYEVGDKQEAIAEMEDVSISLKGYPEVHAALA 173

Query: 175 AALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
           AALYVDKHA LLAENQFTIATLLDPHYTD+SYVK+TKHWPPSLVSSL+ FITLS
Sbjct: 174 AALYVDKHAPLLAENQFTIATLLDPHYTDISYVKETKHWPPSLVSSLKRFITLS 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522505|gb|AFK49314.1| unknown [Medicago truncatula]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/225 (65%), Positives = 176/225 (78%), Gaps = 10/225 (4%)

Query: 7   PVCHLLLSGSQSEAQRRNPIKTPKTPLQLPLTSRRLLFFSLPFSSLLLLPNNRKITNKPS 66
           P+ HL L   ++   + +  +      +  L++RRL  FS+P SS + LP        P+
Sbjct: 12  PISHLPLRNPKTIRIKNSCHQNKTKAFRAQLSNRRLFLFSIPLSSFIFLPF-------PA 64

Query: 67  SSDAFAAT---YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVV 123
             +  + T   YDP+T++E+DASA +S RVS  +ELLEKGRELQA+GDFN ALQYF+ V+
Sbjct: 65  FCEGDSVTSQEYDPVTRSERDASALISQRVSRGVELLEKGRELQALGDFNGALQYFSQVI 124

Query: 124 ENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA 183
           E+YKD AFSEYARVGRALALYE+GDREEAIAEMEDVSISLKGYPEVHAALAAALY DKHA
Sbjct: 125 ESYKDLAFSEYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYADKHA 184

Query: 184 LLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
            LLAENQFTIATLLDPH+TDLSYV+DTKHWPPSL+SSL+HFITLS
Sbjct: 185 ALLAENQFTIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFITLS 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519977|ref|XP_003630277.1| hypothetical protein MTR_8g093750 [Medicago truncatula] gi|355524299|gb|AET04753.1| hypothetical protein MTR_8g093750 [Medicago truncatula]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 145/222 (65%), Positives = 172/222 (77%), Gaps = 4/222 (1%)

Query: 7   PVCHLLLSGSQSEAQRRNPIKTPKTPLQLPLTSRRLLFFSLPFSSLLLLPNNRKITNKPS 66
           P+ HL L   ++   + +  +      +  L++RRL  FS+P SS + LP          
Sbjct: 12  PISHLPLRNPKTIRIKNSCHQNKTKAFRAQLSNRRLFLFSIPLSSFIFLP----FPAFCE 67

Query: 67  SSDAFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY 126
                +  YDP+T++E+DASA +S RVS  +ELLEKGRELQA+GDFN ALQYF+ V+E+Y
Sbjct: 68  GDSVISQEYDPVTRSERDASALISQRVSRGVELLEKGRELQALGDFNGALQYFSQVIESY 127

Query: 127 KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLL 186
           KD AFSEYARVGRALALYE+GDREEAIAEMEDVSISLKGYPEVHAALAAALY DKHA LL
Sbjct: 128 KDLAFSEYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYADKHAALL 187

Query: 187 AENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
           AENQFTIATLLDPH+TDLSYV+DTKHWPPSL+SSL+HFITLS
Sbjct: 188 AENQFTIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFITLS 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080975|ref|XP_002306251.1| predicted protein [Populus trichocarpa] gi|222855700|gb|EEE93247.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/163 (82%), Positives = 152/163 (93%)

Query: 66  SSSDAFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN 125
           +S  A A +YDP++QAEK+AS A+S RVS+A+ELLEKGRELQA GDFN+AL YFTL+VEN
Sbjct: 68  NSCWALAESYDPVSQAEKEASTAISRRVSEAVELLEKGRELQARGDFNEALLYFTLMVEN 127

Query: 126 YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALL 185
           YKDFAFS+Y RVGRAL+LYEVG+REEAIAEMEDVSISLKGYPE+HAALAAALY DKHALL
Sbjct: 128 YKDFAFSDYGRVGRALSLYEVGNREEAIAEMEDVSISLKGYPEIHAALAAALYADKHALL 187

Query: 186 LAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
           LAENQFTIAT+LDPHYTDLSYVK+TKHWPPSLVSSL+ FITLS
Sbjct: 188 LAENQFTIATMLDPHYTDLSYVKETKHWPPSLVSSLQQFITLS 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495718|gb|AFK35925.1| unknown [Lotus japonicus]

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 142/159 (89%)

Query: 70  AFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF 129
           AF   YDP+T  E+DASA +S RV+  +ELLEKGRELQA GDFN AL YF+ V+++YKD 
Sbjct: 61  AFGEEYDPVTAPERDASALISQRVAKGVELLEKGRELQAQGDFNGALDYFSQVIDSYKDL 120

Query: 130 AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAEN 189
           AFSEYARVGRAL LYEVGDRE+AIAEMEDVSISLKGYPEVHAALAAALY DKHA LLAEN
Sbjct: 121 AFSEYARVGRALVLYEVGDREQAIAEMEDVSISLKGYPEVHAALAAALYSDKHAPLLAEN 180

Query: 190 QFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
           QFTIATLLDPH+TDLSYV++TKHWPPSLVSSL+HFITLS
Sbjct: 181 QFTIATLLDPHFTDLSYVRNTKHWPPSLVSSLQHFITLS 219

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431627|ref|XP_002262727.1| PREDICTED: uncharacterized protein LOC100260231 [Vitis vinifera] gi|296088538|emb|CBI37529.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/231 (64%), Positives = 172/231 (74%), Gaps = 17/231 (7%)

Query: 1   MAAYQAPVCHLLLSGSQSEAQRRNPIK---TPKTPLQLPLTSRRLLFFSLPFSSLLLLPN 57
           M A + P     L  +    +   PI+    P +P      +RR L  S     ++LLP 
Sbjct: 1   MGACKVPPISCFLLPTPPNCKTPIPIRQKLNPSSP------NRRGLLISTSSLLVVLLP- 53

Query: 58  NRKITNKPSSSDAFAATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQ 117
                  P+SS A   T+DP++  E+DASA VS RVS+A+ LLEKGRELQA GDF +ALQ
Sbjct: 54  ------PPTSSSALP-TFDPVSPNERDASADVSQRVSEAVSLLEKGRELQAQGDFERALQ 106

Query: 118 YFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL 177
           YFT VV NYKDFAFS+YARVGRALALYEVGDR+EAIAEMEDVSISLKGYPEVHAALAAAL
Sbjct: 107 YFTQVVNNYKDFAFSDYARVGRALALYEVGDRQEAIAEMEDVSISLKGYPEVHAALAAAL 166

Query: 178 YVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
           Y DKHA LLAENQFTIATLLDPHYTD++YV++TKHWPPSL+SSL+HFITLS
Sbjct: 167 YADKHAPLLAENQFTIATLLDPHYTDIAYVRETKHWPPSLISSLQHFITLS 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723301|ref|NP_001237274.1| uncharacterized protein LOC100500132 [Glycine max] gi|255629414|gb|ACU15053.1| unknown [Glycine max]

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 154/242 (63%), Positives = 175/242 (72%), Gaps = 28/242 (11%)

Query: 2   AAYQAPVCHLLLSGSQSEAQRRNPIKTPKTPLQ--------LPLTSRRLLFFSLPFSSLL 53
            A +AP+CHL             P + PKT +Q        LP     L    L    LL
Sbjct: 3   GACRAPICHL-------------PPQKPKTRIQNSHSRRAQLPNRRLFLFSLPLSSFLLL 49

Query: 54  LLP-----NNRKITNK-PSSSDAFAAT-YDPLTQAEKDASAAVSSRVSDALELLEKGREL 106
            +P     NN  I +K  S   +FAAT YDP++ AE++ASA VS RVS A+ELLEKGREL
Sbjct: 50  PVPSFGDGNNAIIIDKLQSGPSSFAATMYDPVSAAEREASALVSERVSQAVELLEKGREL 109

Query: 107 QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY 166
           Q  GDF+ AL YF+ V+E+YKD AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY
Sbjct: 110 QTQGDFSGALDYFSKVIESYKDLAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY 169

Query: 167 PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFIT 226
           PE+HAALAAALY DKHA LLAENQF IATLLDPH+TDLSYV+DTKHWPPSL+SSL+HFIT
Sbjct: 170 PEIHAALAAALYADKHATLLAENQFAIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFIT 229

Query: 227 LS 228
           LS
Sbjct: 230 LS 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357155030|ref|XP_003576984.1| PREDICTED: uncharacterized protein LOC100835766 [Brachypodium distachyon]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 134/154 (87%)

Query: 75  YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEY 134
           YDP T++E+ ASAA+S RV +A+ LL+ GR+LQA GDF  AL  FT VV  YKD A SEY
Sbjct: 61  YDPTTESERAASAALSLRVGEAVRLLDLGRDLQARGDFPSALASFTAVVRGYKDLALSEY 120

Query: 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIA 194
           ARVGRAL LYE+GDR+E+IAEMEDVS++LKGYPE+HAALAAALY DKHA LLAENQF IA
Sbjct: 121 ARVGRALVLYEIGDRDESIAEMEDVSVALKGYPEIHAALAAALYADKHAPLLAENQFAIA 180

Query: 195 TLLDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
           TLLDPHYTDL+YV+DTKHWPPSLVSSLR+FITLS
Sbjct: 181 TLLDPHYTDLAYVRDTKHWPPSLVSSLRNFITLS 214

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242083050|ref|XP_002441950.1| hypothetical protein SORBIDRAFT_08g005390 [Sorghum bicolor] gi|241942643|gb|EES15788.1| hypothetical protein SORBIDRAFT_08g005390 [Sorghum bicolor]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 131/151 (86%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
           +T+AE+ ASAAVS RV +A+ LLE GRELQA G+F +AL  FT VV  Y D A SEYARV
Sbjct: 88  VTEAERAASAAVSRRVGEAVGLLELGRELQARGEFPQALASFTRVVREYADLALSEYARV 147

Query: 138 GRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197
           GRAL LYE+GDR+++IAEMEDVSI+LKGYPE+HAALAAALY DKHA LLAENQF IATLL
Sbjct: 148 GRALVLYEIGDRDQSIAEMEDVSIALKGYPEIHAALAAALYADKHAALLAENQFAIATLL 207

Query: 198 DPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
           DPHYTDL+YV+DTKHWPPSLV+SL HFITLS
Sbjct: 208 DPHYTDLAYVRDTKHWPPSLVASLHHFITLS 238

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.001
TIGR03302	235	TIGR03302, OM_YfiO, outer membrane assembly lipopr	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 98  ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157
            LL  G     +GD+++AL+Y+   +E   D A + Y     A A Y++G  EEA+ + E
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYN---LAAAYYKLGKYEEALEDYE 58

Query: 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200
                     + +  L  A Y        A   +  A  LDP+
Sbjct: 59  KALELDPDNAKAYYNLGLAYY-KLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 95  DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR-EEAI 153
           +A  L   G  L  +GD+++A++ +   +E   D A    A    ALA  ++G   EEA+
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNA---EAYYNLALAYLKLGKDYEEAL 58

Query: 154 AEME 157
            ++E
Sbjct: 59  EDLE 62

Length = 69

>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 98  ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL-----ALYEVGDREEA 152
           EL E+ +E    GD+ +A++YF  +   Y    FS YA   +A      A Y+ GD  EA
Sbjct: 35  ELYEEAKEALDSGDYTEAIKYFEALESRY---PFSPYAE--QAQLDLAYAYYKSGDYAEA 89

Query: 153 IAEMEDVSISLKGYPEVHAALAAALY 178
           IA  +   I L  +P  H     A Y
Sbjct: 90  IAAADRF-IRL--HPN-HPDADYAYY 111

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795) [Protein fate, Protein and peptide secretion and trafficking]. Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
PRK15359	144	type III secretion system chaperone protein SscB;	99.76
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.73
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.7
PRK11189	296	lipoprotein NlpI; Provisional	99.69
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.68
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.66
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.64
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.63
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.59
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.58
PRK15359	144	type III secretion system chaperone protein SscB;	99.58
PRK11189	296	lipoprotein NlpI; Provisional	99.57
PRK12370	553	invasion protein regulator; Provisional	99.57
PRK12370	553	invasion protein regulator; Provisional	99.56
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.52
KOG0553	304	consensus TPR repeat-containing protein [General f	99.51
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.5
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.5
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.49
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.46
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.46
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.45
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.43
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.43
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.42
KOG1126	638	consensus DNA-binding cell division cycle control	99.41
KOG1125	579	consensus TPR repeat-containing protein [General f	99.4
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.39
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.38
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.38
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.38
KOG1126	638	consensus DNA-binding cell division cycle control	99.36
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.36
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.36
PLN02789	320	farnesyltranstransferase	99.35
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.34
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.34
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.33
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.32
KOG0553	304	consensus TPR repeat-containing protein [General f	99.32
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.31
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.29
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.28
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.28
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.28
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.27
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.27
PLN02789	320	farnesyltranstransferase	99.27
KOG1125	579	consensus TPR repeat-containing protein [General f	99.26
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.26
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.24
PRK10803	263	tol-pal system protein YbgF; Provisional	99.23
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.22
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.22
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.21
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.2
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.2
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.2
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.19
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.18
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.17
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.13
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.12
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.11
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.1
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.09
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.06
PF12688	120	TPR_5: Tetratrico peptide repeat	99.05
PRK14574	822	hmsH outer membrane protein; Provisional	99.05
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.04
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.03
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.03
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.03
PF13371	73	TPR_9: Tetratricopeptide repeat	99.02
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.0
KOG1129	478	consensus TPR repeat-containing protein [General f	98.99
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.99
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.97
PRK15331	165	chaperone protein SicA; Provisional	98.97
PF13512	142	TPR_18: Tetratricopeptide repeat	98.95
PRK14574	822	hmsH outer membrane protein; Provisional	98.95
PRK11906	458	transcriptional regulator; Provisional	98.95
PRK10803	263	tol-pal system protein YbgF; Provisional	98.94
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.93
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.91
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.86
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.86
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.85
KOG4555	175	consensus TPR repeat-containing protein [Function	98.85
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.85
KOG2076	895	consensus RNA polymerase III transcription factor	98.83
KOG2003	840	consensus TPR repeat-containing protein [General f	98.82
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.81
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.81
PRK11906	458	transcriptional regulator; Provisional	98.8
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.77
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.74
KOG2076	895	consensus RNA polymerase III transcription factor	98.73
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.73
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.71
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.71
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.71
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.7
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.66
PF13512	142	TPR_18: Tetratricopeptide repeat	98.63
KOG1129	478	consensus TPR repeat-containing protein [General f	98.63
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.62
PF13371	73	TPR_9: Tetratricopeptide repeat	98.62
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.62
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.61
PRK15331	165	chaperone protein SicA; Provisional	98.6
KOG2003	840	consensus TPR repeat-containing protein [General f	98.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.59
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.58
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.57
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.56
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.54
KOG4234	271	consensus TPR repeat-containing protein [General f	98.53
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.52
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.5
PF12688	120	TPR_5: Tetratrico peptide repeat	98.5
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.49
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.48
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.48
PF13428	44	TPR_14: Tetratricopeptide repeat	98.48
PF13431	34	TPR_17: Tetratricopeptide repeat	98.46
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.46
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.45
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.44
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.43
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.42
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.42
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.4
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.4
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.4
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.39
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.33
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.32
KOG4555	175	consensus TPR repeat-containing protein [Function	98.3
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.29
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.27
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.26
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.24
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.21
KOG4234	271	consensus TPR repeat-containing protein [General f	98.2
PF13428	44	TPR_14: Tetratricopeptide repeat	98.14
PF13431	34	TPR_17: Tetratricopeptide repeat	98.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.14
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.13
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.1
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.05
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.05
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.03
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.01
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.0
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.99
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.98
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.98
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.93
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.92
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.92
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.86
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.82
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.81
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.77
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.76
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.75
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.72
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.67
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.65
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.65
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.61
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.6
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.57
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.53
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.52
PRK04841	903	transcriptional regulator MalT; Provisional	97.51
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.5
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.5
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.49
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.48
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.45
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.44
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.42
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.4
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.39
PLN03077	857	Protein ECB2; Provisional	97.39
PRK10941	269	hypothetical protein; Provisional	97.36
PRK04841	903	transcriptional regulator MalT; Provisional	97.35
PLN03218	1060	maturation of RBCL 1; Provisional	97.32
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.24
PLN03077	857	Protein ECB2; Provisional	97.21
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.2
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.13
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.1
PLN03218	1060	maturation of RBCL 1; Provisional	97.1
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.08
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.08
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.01
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.98
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.94
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.94
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.88
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.85
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.85
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.82
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.81
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.8
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.77
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.71
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.69
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.69
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.66
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.62
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.6
KOG1310	758	consensus WD40 repeat protein [General function pr	96.6
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.55
KOG1586	288	consensus Protein required for fusion of vesicles	96.49
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.47
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.36
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.33
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.27
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.23
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.23
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.13
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.12
KOG3364	149	consensus Membrane protein involved in organellar	96.12
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.99
PRK10941	269	hypothetical protein; Provisional	95.98
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.96
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.92
KOG2471	696	consensus TPR repeat-containing protein [General f	95.89
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.81
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.74
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.62
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.6
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.59
KOG1586	288	consensus Protein required for fusion of vesicles	95.57
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.49
KOG1585	308	consensus Protein required for fusion of vesicles	95.49
COG2912	269	Uncharacterized conserved protein [Function unknow	95.48
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.47
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.43
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.41
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.2
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.18
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.95
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.91
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.87
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.83
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.77
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.71
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.67
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.64
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.62
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.62
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.53
KOG2471	696	consensus TPR repeat-containing protein [General f	94.49
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.44
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.39
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.33
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.31
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.25
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.11
KOG1310	758	consensus WD40 repeat protein [General function pr	93.96
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.87
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.86
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.84
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.72
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.7
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.61
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.39
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.31
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.24
KOG3364	149	consensus Membrane protein involved in organellar	93.15
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.08
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.07
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.01
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.64
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.46
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.3
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.91
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.9
KOG1585	308	consensus Protein required for fusion of vesicles	91.85
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.46
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	91.44
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.43
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.16
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.13
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.01
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.95
COG4941	415	Predicted RNA polymerase sigma factor containing a	90.81
COG2912	269	Uncharacterized conserved protein [Function unknow	90.63
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.47
KOG1258	577	consensus mRNA processing protein [RNA processing	89.46
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	89.14
COG5191	435	Uncharacterized conserved protein, contains HAT (H	88.73
KOG3783	546	consensus Uncharacterized conserved protein [Funct	88.51
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	88.41
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.16
COG5191	435	Uncharacterized conserved protein, contains HAT (H	87.79
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.77
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.74
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.31
KOG2047	835	consensus mRNA splicing factor [RNA processing and	87.0
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.64
KOG0529	421	consensus Protein geranylgeranyltransferase type I	86.48
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.07
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	85.91
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.43
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.17
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.07
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.57
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	84.13
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	84.11
KOG0529	421	consensus Protein geranylgeranyltransferase type I	83.93
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.78
COG3947	361	Response regulator containing CheY-like receiver a	83.6
PF04212	69	MIT: MIT (microtubule interacting and transport) d	83.15
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	82.99
PF12854	34	PPR_1: PPR repeat	81.92
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	81.47
PF12854	34	PPR_1: PPR repeat	81.34
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.68

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.76  E-value=2.4e-17  Score=128.07  Aligned_cols=121  Identities=17%  Similarity=0.063  Sum_probs=112.5

Q ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087           82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus        82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      ...+.++++.+|++   ++++|.++...|++++|+..|++++.++|++..   +++++|.++..+|++++|+..|++++.
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---AHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            45668899999986   678999999999999999999999999999999   999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          162 SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       162 ~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      ..|.++++++++|.++.. .|++++|+..|+++++++|++.......+
T Consensus        87 l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKM-MGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             cCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            999999999999999988 56999999999999999999998776555

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.73  E-value=2.8e-16  Score=128.24  Aligned_cols=130  Identities=18%  Similarity=0.142  Sum_probs=118.3

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+....|....+.+++.||++..+|..++.+|...|+.+.|.+.|++|++++|++.+   +++|.|..++.+|++++
T Consensus        45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---VLNNYG~FLC~qg~~~e  121 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---VLNNYGAFLCAQGRPEE  121 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---hhhhhhHHHHhCCChHH
Confidence            445677778888899999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |...|+++ ...|.++   +.+.++|.|-..+ |+++.|++.|+++|+++|+++....
T Consensus       122 A~q~F~~A-l~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~~~~~~l  177 (250)
T COG3063         122 AMQQFERA-LADPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQFPPALL  177 (250)
T ss_pred             HHHHHHHH-HhCCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcCCChHHH
Confidence            99999999 4467664   8899999998885 5889999999999999999987544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.70  E-value=7.6e-16  Score=125.80  Aligned_cols=122  Identities=11%  Similarity=0.053  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHcCC--HHHHHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALAL-YEVGD--REEAIAE  155 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~-~~~g~--~~~A~~~  155 (228)
                      ++.+..+...++.+|++++.|+.+|.++...|++++|+..|+++++++|++..   ++.++|.++ ...|+  +++|++.
T Consensus        56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---~~~~lA~aL~~~~g~~~~~~A~~~  132 (198)
T PRK10370         56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---LYAALATVLYYQAGQHMTPQTREM  132 (198)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcCCCCcHHHHHH
Confidence            56677788889999999999999999999999999999999999999999999   999999986 67788  5999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +++++...|.++++++.+|..++. .|++++|+.+|+++++++|.+.+.
T Consensus       133 l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        133 IDKALALDANEVTALMLLASDAFM-QADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCccH
Confidence            999999999999999999999988 569999999999999999876653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.69  E-value=4.1e-15  Score=128.58  Aligned_cols=122  Identities=17%  Similarity=0.051  Sum_probs=108.2

Q ss_pred             chHHHHHHHHHHh---cChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           78 LTQAEKDASAAVS---SRVS-DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        78 ~~~a~~~~~~al~---~~p~-~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      .+.++..+...+.   ++|+ .+..|+++|.++...|++++|+..|+++++++|+++.   +++++|.++...|++++|+
T Consensus        42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---AYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCCHHHHH
Confidence            4455666667774   4444 4888999999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ..|++++...|.++.++.++|.+++. .|++++|++.|+++++++|+++.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999988 56899999999999999999873

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.68  E-value=3.2e-16  Score=142.56  Aligned_cols=129  Identities=17%  Similarity=0.114  Sum_probs=106.4

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .....-+.|..++..+++..|+-+.++.|+|.+|.++|++++|+.+|+.+++++|.+++   ++.|+|.+|-++|+.++|
T Consensus       365 ~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd---a~~NmGnt~ke~g~v~~A  441 (966)
T KOG4626|consen  365 REQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD---ALSNMGNTYKEMGDVSAA  441 (966)
T ss_pred             HHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH---HHHhcchHHHHhhhHHHH
Confidence            34455667777777777888888888888888888888888888888888888888888   888888888888888888


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      +.+|++++...|...+++.+|+.++.. .|+..+|++.|+.+|+++|++++++
T Consensus       442 ~q~y~rAI~~nPt~AeAhsNLasi~kD-sGni~~AI~sY~~aLklkPDfpdA~  493 (966)
T KOG4626|consen  442 IQCYTRAIQINPTFAEAHSNLASIYKD-SGNIPEAIQSYRTALKLKPDFPDAY  493 (966)
T ss_pred             HHHHHHHHhcCcHHHHHHhhHHHHhhc-cCCcHHHHHHHHHHHccCCCCchhh
Confidence            888888877777777888888887766 5688999999999999999988863

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.66  E-value=9.5e-16  Score=139.53  Aligned_cols=127  Identities=17%  Similarity=0.071  Sum_probs=66.0

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      .+..+-|+..+.++++.+|+..+++.|+|+++...|+..+|+++|.+++.+.|++++   +.+|+|.++.++|.+++|..
T Consensus       299 qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had---am~NLgni~~E~~~~e~A~~  375 (966)
T KOG4626|consen  299 QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD---AMNNLGNIYREQGKIEEATR  375 (966)
T ss_pred             cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhccchHHHH
Confidence            344445555555555555555555555555555555555555555555555555555   55555555555555555555


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      .|++++...|....++.+|+.++.+ +|++++|+.+|+++|+++|.+++++
T Consensus       376 ly~~al~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~~YkealrI~P~fAda~  425 (966)
T KOG4626|consen  376 LYLKALEVFPEFAAAHNNLASIYKQ-QGNLDDAIMCYKEALRIKPTFADAL  425 (966)
T ss_pred             HHHHHHhhChhhhhhhhhHHHHHHh-cccHHHHHHHHHHHHhcCchHHHHH
Confidence            5555544444444555555554444 3345555555555555555555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.64  E-value=7.7e-15  Score=111.60  Aligned_cols=116  Identities=15%  Similarity=0.056  Sum_probs=109.5

Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087           85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK  164 (228)
Q Consensus        85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~  164 (228)
                      +..+++.+|++..+.+.+|..+...|++++|+..|++++.++|++..   +++++|.++..+|++++|+..+++++...|
T Consensus         6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---YWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            46788999999999999999999999999999999999999999999   999999999999999999999999988888


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          165 GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       165 ~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .+++.++.+|.++.. .|++++|+..|+++++++|++...
T Consensus        83 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        83 DDPRPYFHAAECLLA-LGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchH
Confidence            899999999998888 568999999999999999988774

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.63  E-value=1.5e-14  Score=141.99  Aligned_cols=141  Identities=11%  Similarity=0.032  Sum_probs=126.3

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.|+..+.++++.+|+ +.+++++|.++.+.|++++|+..|+++++++|+++.   +++++|.++...|++++|+..
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---YQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHH
Confidence            7788888899999999996 999999999999999999999999999999999999   999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCChhHHHHHHHh
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHF  224 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~~~~~~~~~~  224 (228)
                      |++++...|.++++++++|.++.. .|++++|+..|+++++++|+.....+..+   |....-..|+++
T Consensus       666 l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA~~~l~~Al~l~P~~a~i~~~~g---~~~~~~~~~~~a  730 (987)
T PRK09782        666 LERAHKGLPDDPALIRQLAYVNQR-LDDMAATQHYARLVIDDIDNQALITPLTP---EQNQQRFNFRRL  730 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCchhhhhhh---HHHHHHHHHHHH
Confidence            999999999999999999999988 56899999999999999999988776555   433333334444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.59  E-value=7.5e-14  Score=131.75  Aligned_cols=125  Identities=14%  Similarity=0.059  Sum_probs=67.6

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      .+..+.|+..+..+++++|++...++++|.++...|++++|+..|+++++++|+++.   +++++|.+++..|++++|+.
T Consensus       344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~  420 (615)
T TIGR00990       344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---IYYHRAQLHFIKGEFAQAGK  420 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHH
Confidence            344445555555555555555555555555555555555555555555555555555   55555555555555555555


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +|++++...|.+...+..+|.+++. .|++++|+..|+++++.+|++..
T Consensus       421 ~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~P~~~~  468 (615)
T TIGR00990       421 DYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMATFRRCKKNFPEAPD  468 (615)
T ss_pred             HHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChH
Confidence            5555555555555555555555544 23555555555555555555544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.58  E-value=7.6e-14  Score=131.74  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=118.3

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.++..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.+++.+|++++|
T Consensus       376 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~---~~~~la~~~~~~g~~~eA  452 (615)
T TIGR00990       376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF---SHIQLGVTQYKEGSIASS  452 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH---HHHHHHHHHHHCCCHHHH
Confidence            35566778888888999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +..|++++...|.+++++..+|.++.. .|++++|++.|+++++++|+...
T Consensus       453 ~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       453 MATFRRCKKNFPEAPDVYNYYGELLLD-QNKFDEAIEKFDTAIELEKETKP  502 (615)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCcccc
Confidence            999999999899999999999999988 56899999999999999998654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.58  E-value=7.7e-14  Score=108.35  Aligned_cols=105  Identities=9%  Similarity=-0.024  Sum_probs=97.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..+.+...+..++..+|.+..+++++|.++...|++++|+..|+++++++|+++.   +++++|.++..+|++++
T Consensus        34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~---a~~~lg~~l~~~g~~~e  110 (144)
T PRK15359         34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE---PVYQTGVCLKMMGEPGL  110 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHcCCHHH
Confidence            445667788999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      |+..|++++...|.+++.+..++.+...
T Consensus       111 Ai~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359        111 AREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999998888876655

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.57  E-value=3.4e-13  Score=116.64  Aligned_cols=121  Identities=23%  Similarity=0.133  Sum_probs=104.0

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.+...+..+++++|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.+++..|++++|
T Consensus        75 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189         75 DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHH
Confidence            44566777888888999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      ++.|++++...|.++..  .+...+....+++++|++.|++++...
T Consensus       152 ~~~~~~al~~~P~~~~~--~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        152 QDDLLAFYQDDPNDPYR--ALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHHhCCCCHHH--HHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            99999998888888732  222223334568999999998877654

>PRK12370 invasion protein regulator; Provisional

Probab=99.57  E-value=8.6e-14  Score=129.94  Aligned_cols=125  Identities=12%  Similarity=-0.075  Sum_probs=111.0

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      .+.|...+.++++++|+++.++..+|.++...|++++|+..|+++++++|+++.   +++++|.++...|++++|+..++
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD---IKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHH
Confidence            467778888999999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchhh
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD-PHYTDLSY  206 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~-P~~~~~~~  206 (228)
                      ++++..|.++..+..++.+++. .|++++|+..++++++.+ |+++..+.
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~~~~~l~~~~p~~~~~~~  445 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYY-HTGIDDAIRLGDELRSQHLQDNPILLS  445 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHHHHHHHHhccccCHHHHH
Confidence            9999888888777667766777 457899999999999886 66666433

>PRK12370 invasion protein regulator; Provisional

Probab=99.56  E-value=7.7e-14  Score=130.28  Aligned_cols=124  Identities=13%  Similarity=-0.045  Sum_probs=112.5

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAI---------GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD  148 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~---------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~  148 (228)
                      .+.|...+.+++++||+++.++.++|.++...         +++++|+..++++++++|+++.   ++..+|.++...|+
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~---a~~~lg~~~~~~g~  353 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ---ALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHccC
Confidence            35667778888999999999999999887633         4589999999999999999999   99999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          149 REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       149 ~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      +++|+..|++++...|+++++++.+|.++.. .|++++|+..|+++++++|++....
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~  409 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAG  409 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhH
Confidence            9999999999999999999999999999888 5689999999999999999987653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.53  E-value=1.8e-12  Score=104.86  Aligned_cols=131  Identities=17%  Similarity=0.101  Sum_probs=110.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.+...+..+++.+|++..+++.+|.++...|++++|++.|+++++.+|++..   +++++|.++...|++++
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~g~~~~  117 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---VLNNYGTFLCQQGKYEQ  117 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcccHHH
Confidence            345567788888888899999999999999999999999999999999999999999988   89999999999999999


Q ss_pred             HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISL--KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~--~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |++.+++++...  +..+..+..+|.++.. .|++++|+..|+++++.+|++...++
T Consensus       118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~  173 (234)
T TIGR02521       118 AMQQFEQAIEDPLYPQPARSLENAGLCALK-AGDFDKAEKYLTRALQIDPQRPESLL  173 (234)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCChHHHH
Confidence            999999996532  2334677788888877 45889999999999999998776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.52  E-value=1.2e-12  Score=108.83  Aligned_cols=130  Identities=18%  Similarity=0.098  Sum_probs=110.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc--
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDA---LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV--  146 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a---~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~--  146 (228)
                      ....+..+.++..+..++..+|+++   .+++.+|.++...|++++|+..|+++++.+|+++.+.++++.+|.+++..  
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~  122 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID  122 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence            3456778888989999999988875   68899999999999999999999999999999988666799999999987  


Q ss_pred             ------CCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          147 ------GDREEAIAEMEDVSISLKGYPEVH-----------------AALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       147 ------g~~~~A~~~~~~al~~~~~~p~~~-----------------~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                            |++++|++.|++++...|.++...                 ..++.+++. .|++++|+..|+++++..|+.+
T Consensus       123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~  200 (235)
T TIGR03302       123 RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTP  200 (235)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCc
Confidence                  899999999999988888876332                 245665666 5699999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.52  E-value=4.7e-13  Score=104.32  Aligned_cols=107  Identities=12%  Similarity=-0.021  Sum_probs=101.0

Q ss_pred             HhcC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087           89 VSSR-VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus        89 l~~~-p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      ..++ +++-+..|.+|..++..|++++|+..|+-+..++|.+..   .|+++|.++..+|++++|+..|.+++...++||
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            3677 888999999999999999999999999999999999999   799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          168 EVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      .+++++|.+++. .|+.++|++.|+.+++.--
T Consensus       104 ~~~~~ag~c~L~-lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        104 QAPWAAAECYLA-CDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             hHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhc
Confidence            999999999999 4588999999999999863

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=1.5e-13  Score=116.09  Aligned_cols=105  Identities=23%  Similarity=0.211  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      .++-+-+-|+-+++.++|.+|+..|.+||+++|.++-   -|.|++-+|.++|.|+.|++.++.+|..+|.+..++..||
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---YYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---HHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            3556778899999999999999999999999999998   6999999999999999999999999888888889999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      .+++. +|++++|++.|+++|+++|++..
T Consensus       157 ~A~~~-~gk~~~A~~aykKaLeldP~Ne~  184 (304)
T KOG0553|consen  157 LAYLA-LGKYEEAIEAYKKALELDPDNES  184 (304)
T ss_pred             HHHHc-cCcHHHHHHHHHhhhccCCCcHH
Confidence            99999 56999999999999999999985

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.50  E-value=1.1e-12  Score=124.82  Aligned_cols=126  Identities=17%  Similarity=0.090  Sum_probs=98.2

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNK----ALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR  149 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~----Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~  149 (228)
                      ..+..++++..+..+++.+|+++.+++++|.++...|++++    |+..|+++++++|++..   ++.++|.++...|++
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~  300 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---IVTLYADALIRTGQN  300 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHCCCH
Confidence            45566677777777777888888888888888888888875    78888888888888877   788888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ++|+..+++++...|.++.++..++.++.. .|++++|++.|+++++.+|++..
T Consensus       301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA~~~l~~al~~~P~~~~  353 (656)
T PRK15174        301 EKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAASDEFVQLAREKGVTSK  353 (656)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccchH
Confidence            888888888877777777777778877776 45778888888888888887654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=2.2e-13  Score=121.29  Aligned_cols=122  Identities=19%  Similarity=0.202  Sum_probs=112.5

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      .+....-..++..+..+||+|+.+|+.+|.++.-+++|++|+..|+++++++|++.-   ++..++.++|+++++++++.
T Consensus       373 ~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~---~~iQl~~a~Yr~~k~~~~m~  449 (606)
T KOG0547|consen  373 ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY---AYIQLCCALYRQHKIAESMK  449 (606)
T ss_pred             hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH---HHHHHHHHHHHHHHHHHHHH
Confidence            344444555667788999999999999999999999999999999999999999998   99999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      .|+++..+.|..|+.+...+.++-.+ ++|+.|++.|..++++.|.
T Consensus       450 ~Fee~kkkFP~~~Evy~~fAeiLtDq-qqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  450 TFEEAKKKFPNCPEVYNLFAEILTDQ-QQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHhhH-HhHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999885 5999999999999999998

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.49  E-value=1.8e-12  Score=127.50  Aligned_cols=150  Identities=15%  Similarity=-0.028  Sum_probs=126.8

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .+.+..+.++..+.++++.+|++...+..++..+.+.|++++|+..|+++++++|+ ..   +++++|.++.++|++++|
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~---a~~~LA~~l~~lG~~deA  628 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN---AYVARATIYRQRHNVPAA  628 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH---HHHHHHHHHHHCCCHHHH
Confidence            45566677888888899999999888888888888889999999999999999997 77   899999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhc----CCCChhHHHHHHHhhcc
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDT----KHWPPSLVSSLRHFITL  227 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  227 (228)
                      +..|++++...|.++.++.++|.++.. .|++++|++.|+++++++|++...++..++    ..-.+.....+++++++
T Consensus       629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        629 VSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999988 468999999999999999999987664331    11123445566666654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.47  E-value=2.3e-12  Score=122.57  Aligned_cols=124  Identities=19%  Similarity=0.097  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087           80 QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus        80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      .++..+.++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.   ++.++|.++.+.|++++|+..|+++
T Consensus       268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~---a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY---VRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3788889999999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          160 SISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       160 l~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      +...|.++.....++.++.. .|++++|++.|+++++++|++....|.
T Consensus       345 l~~~P~~~~~~~~~a~al~~-~G~~deA~~~l~~al~~~P~~~~~~~~  391 (656)
T PRK15174        345 AREKGVTSKWNRYAAAALLQ-AGKTSEAESVFEHYIQARASHLPQSFE  391 (656)
T ss_pred             HHhCccchHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhChhhchhhHH
Confidence            87777777666667887766 568999999999999999998765553

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.46  E-value=2.1e-12  Score=122.78  Aligned_cols=124  Identities=13%  Similarity=-0.036  Sum_probs=79.5

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..+++...++++++.+|++..++.+++.++.+++++++|+..+++++..+|++..   +++++|.++.++|++++
T Consensus        96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---~~~~~a~~l~~~g~~~~  172 (694)
T PRK15179         96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---EILLEAKSWDEIGQSEQ  172 (694)
T ss_pred             HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHhcchHH
Confidence            344555666666666666666666666666666666666666666666666666666666   66666666666666666


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      |+..|++++...|.+++++..+|.++... |+.++|...|+++++..-
T Consensus       173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        173 ADACFERLSRQHPEFENGYVGWAQSLTRR-GALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhC
Confidence            66666666555555566666666666553 356666666666666543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.46  E-value=1.5e-12  Score=115.41  Aligned_cols=103  Identities=18%  Similarity=0.134  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY  178 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~  178 (228)
                      +...|..++..|+|++|+..|+++++++|++..   +++++|.+|..+|++++|+..+++++...|.++.+++.+|.+++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~   81 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM   81 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            556678888888888888888888888888888   78888888888888888888888888877778888888888777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          179 VDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       179 ~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      .+ |++++|+..|+++++++|++....
T Consensus        82 ~l-g~~~eA~~~~~~al~l~P~~~~~~  107 (356)
T PLN03088         82 KL-EEYQTAKAALEKGASLAPGDSRFT  107 (356)
T ss_pred             Hh-CCHHHHHHHHHHHHHhCCCCHHHH
Confidence            74 578888888888888888877653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.45  E-value=3.3e-12  Score=121.52  Aligned_cols=145  Identities=12%  Similarity=-0.079  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMED  158 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~  158 (228)
                      .++....+...+..|+++++++++|.+..+.|++++|+..++++++++|++..   ++.+++.++.+++++++|+..+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---a~~~~a~~L~~~~~~eeA~~~~~~  145 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---AFILMLRGVKRQQGIEAGRAEIEL  145 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHhccHHHHHHHHHH
Confidence            33444445556778889999999999999999999999999999999999999   999999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh--cC--CCChhHHHHHHHhhcc
Q 027087          159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD--TK--HWPPSLVSSLRHFITL  227 (228)
Q Consensus       159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~  227 (228)
                      ++...|.++++++.+|.++... |++++|++.|++++..+|++..++.-.+  ++  --.+.....|+++++.
T Consensus       146 ~l~~~p~~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        146 YFSGGSSSAREILLEAKSWDEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HhhcCCCCHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999885 5999999999999999998887644211  11  1233456667666653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.43  E-value=6.7e-12  Score=92.50  Aligned_cols=111  Identities=15%  Similarity=0.129  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAA  172 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~  172 (228)
                      ++.++.+|..+...|++++|+..|+++++.+|++.....+++.+|.+++..|++++|+..|++++...|.+   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            46789999999999999999999999999999874322389999999999999999999999998777765   578899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          173 LAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      +|.++... +++++|+..|+++++..|++..+...
T Consensus        82 ~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        82 LGMSLQEL-GDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHh-CChHHHHHHHHHHHHHCcCChhHHHH
Confidence            99998884 58999999999999999998765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.43  E-value=1e-11  Score=100.35  Aligned_cols=131  Identities=18%  Similarity=0.120  Sum_probs=115.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHcCCH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY--KDFAFSEYARVGRALALYEVGDR  149 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~--P~~~~~~~a~~~la~~~~~~g~~  149 (228)
                      ....+..+.+...+..+++.+|++...++++|.++...|++++|+..|++++...  +....   .+.++|.++...|++
T Consensus        75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~  151 (234)
T TIGR02521        75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR---SLENAGLCALKAGDF  151 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH---HHHHHHHHHHHcCCH
Confidence            4455677888888899999999999999999999999999999999999999854  34455   789999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++|+..+++++...+.++..+..++.+++. .|++++|...+++++++.|+.....+
T Consensus       152 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~  207 (234)
T TIGR02521       152 DKAEKYLTRALQIDPQRPESLLELAELYYL-RGQYKDARAYLERYQQTYNQTAESLW  207 (234)
T ss_pred             HHHHHHHHHHHHhCcCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999999988888888999999998888 56899999999999999887766544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.42  E-value=3.6e-12  Score=104.32  Aligned_cols=133  Identities=14%  Similarity=0.026  Sum_probs=119.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +.+....+.+...++.+++++|++.++++|.|.-++.+|+|++|...|++|+. +|.+......+-|+|+|-.++|+++.
T Consensus        79 Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~  157 (250)
T COG3063          79 YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQ  157 (250)
T ss_pred             HHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchh
Confidence            44556677777888899999999999999999999999999999999999987 79887777799999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |...|++++..+|++|.....++...+. .|+|-.|+..+++.....+-..+..|
T Consensus       158 A~~~l~raL~~dp~~~~~~l~~a~~~~~-~~~y~~Ar~~~~~~~~~~~~~A~sL~  211 (250)
T COG3063         158 AEEYLKRALELDPQFPPALLELARLHYK-AGDYAPARLYLERYQQRGGAQAESLL  211 (250)
T ss_pred             HHHHHHHHHHhCcCCChHHHHHHHHHHh-cccchHHHHHHHHHHhcccccHHHHH
Confidence            9999999999999999999999998988 56899999999999888776666555

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=1.4e-12  Score=119.70  Aligned_cols=125  Identities=13%  Similarity=-0.013  Sum_probs=99.5

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      .|.|...++.++..||.+..+||.+|.+|.++++++.|+-.|++|++++|.+..   ....+|.++.++|+.|+|+..|+
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv---i~~~~g~~~~~~k~~d~AL~~~~  547 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV---ILCHIGRIQHQLKRKDKALQLYE  547 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh---HHhhhhHHHHHhhhhhHHHHHHH
Confidence            456666677777888888888888888888888888888888888888888877   77788888888888888888888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +|+..+|.+|-..+..+.+++.. +++++|...++++-++.|+....++
T Consensus       548 ~A~~ld~kn~l~~~~~~~il~~~-~~~~eal~~LEeLk~~vP~es~v~~  595 (638)
T KOG1126|consen  548 KAIHLDPKNPLCKYHRASILFSL-GRYVEALQELEELKELVPQESSVFA  595 (638)
T ss_pred             HHHhcCCCCchhHHHHHHHHHhh-cchHHHHHHHHHHHHhCcchHHHHH
Confidence            88777778887778888888774 4778888888888888888776655

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=6e-12  Score=114.03  Aligned_cols=131  Identities=17%  Similarity=0.067  Sum_probs=103.7

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-------------------------
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-------------------------  132 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-------------------------  132 (228)
                      ...++..+..++..||+++++|..||.+....++-..||.+++++++++|++.++                         
T Consensus       301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi  380 (579)
T KOG1125|consen  301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI  380 (579)
T ss_pred             chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            5666666677777777777777777777777777777777777777777775440                         


Q ss_pred             -------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087          133 -------------------------------------------------EYARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus       133 -------------------------------------------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                                                                       ...+..||.+|+-.|+|++|+.+|+.+|...
T Consensus       381 ~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~  460 (579)
T KOG1125|consen  381 RNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK  460 (579)
T ss_pred             HhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC
Confidence                                                             0134568889999999999999999998888


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      |.|--.|+-||..+.. +.+.++|+..|++||++.|.|..+++.-+
T Consensus       461 Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlg  505 (579)
T KOG1125|consen  461 PNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLG  505 (579)
T ss_pred             CchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence            8888899999999988 77899999999999999999999888544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.39  E-value=9.5e-12  Score=125.15  Aligned_cols=133  Identities=15%  Similarity=0.075  Sum_probs=117.3

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-----------HHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-----------EYARVGRA  140 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-----------~~a~~~la  140 (228)
                      ....+..+.|+..+.++++.+|+++.+++.+|.++.++|++++|+..|+++++++|++...           .+....+|
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence            3455667889999999999999999999999999999999999999999999999987631           01234668


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          141 LALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      .++...|++++|+..|++++...|.++.++..+|.++.. .|++++|++.|+++++++|++..+.
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~-~g~~~eA~~~y~~aL~~~p~~~~a~  422 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA-RKDYAAAERYYQQALRMDPGNTNAV  422 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            899999999999999999999999999999999999888 5699999999999999999988753

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.38  E-value=2.1e-12  Score=87.11  Aligned_cols=68  Identities=28%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG-DREEAIAEMEDVSISLK  164 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~~  164 (228)
                      +++..|+++|.++...|+|++|+..|+++++++|+++.   +++++|.++..+| ++++|++.+++++...|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            36788999999999999999999999999999999999   9999999999999 79999999999965543

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.38  E-value=1.6e-11  Score=123.55  Aligned_cols=129  Identities=20%  Similarity=0.103  Sum_probs=114.7

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH------------
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL------------  141 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~------------  141 (228)
                      +.+..+.|+..+.++++.+|++..+++.+|.++..+|++++|++.|+++++++|++..   ++.+++.            
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~---a~~~L~~l~~~~~~~~A~~  439 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN---AVRGLANLYRQQSPEKALA  439 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCHHHHHH
Confidence            4556677888889999999999999999999999999999999999999999999987   5555444            


Q ss_pred             ------------------------------HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 027087          142 ------------------------------ALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQF  191 (228)
Q Consensus       142 ------------------------------~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~  191 (228)
                                                    ++...|++++|++.|++++...|.++.+++.++.++.. .|++++|+..|
T Consensus       440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l  518 (1157)
T PRK11447        440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALM  518 (1157)
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence                                          45568999999999999999999999999999998888 56899999999


Q ss_pred             HHHHhcCCCCCchhh
Q 027087          192 TIATLLDPHYTDLSY  206 (228)
Q Consensus       192 ~~al~l~P~~~~~~~  206 (228)
                      +++++++|++.+.++
T Consensus       519 ~~al~~~P~~~~~~~  533 (1157)
T PRK11447        519 RRLAQQKPNDPEQVY  533 (1157)
T ss_pred             HHHHHcCCCCHHHHH
Confidence            999999999987654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.38  E-value=1.1e-11  Score=85.11  Aligned_cols=99  Identities=28%  Similarity=0.300  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL  177 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l  177 (228)
                      +++++|.++...|++++|+..++++++..|++..   +++.+|.++...|++++|+..+++++...+.++..+..++.++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD---AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            5789999999999999999999999999999988   8999999999999999999999999888888888899999988


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC
Q 027087          178 YVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       178 ~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ... |++++|...++++++.+|+
T Consensus        79 ~~~-~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          79 YKL-GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHH-HhHHHHHHHHHHHHccCCC
Confidence            885 5899999999999998874

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=1.5e-12  Score=119.35  Aligned_cols=116  Identities=14%  Similarity=0.099  Sum_probs=77.8

Q ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087           84 DASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus        84 ~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      .+...+..||+.++.|..+|++|..+++++.||++|++|+++||++.-   ++-.+|.-+....++|.|..+|+.+|..+
T Consensus       409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY---ayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY---AYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch---hhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            345566777888888888888888888888888888888888887664   66666666666666666666666665555


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +.+-.+|+++|.++.. +++++.|+-+|++|+++||.+..
T Consensus       486 ~rhYnAwYGlG~vy~K-qek~e~Ae~~fqkA~~INP~nsv  524 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLK-QEKLEFAEFHFQKAVEINPSNSV  524 (638)
T ss_pred             chhhHHHHhhhhheec-cchhhHHHHHHHhhhcCCccchh
Confidence            5555666666666655 33556666666666666665554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.36  E-value=2.4e-11  Score=96.83  Aligned_cols=112  Identities=15%  Similarity=0.156  Sum_probs=96.7

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      ..++..+..++++|..+...|++++|+..|++++++.|+......+++++|.++...|++++|+..|++++...|.++..
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  108 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA  108 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence            34567788899999999999999999999999999988754222379999999999999999999999998888888899


Q ss_pred             HHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCCC
Q 027087          170 HAALAAALYVDKHA--------------LLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       170 ~~~la~~l~~~~~~--------------~~~A~~~~~~al~l~P~~~  202 (228)
                      +..+|.++...+ +              +++|++.+++++.++|++.
T Consensus       109 ~~~lg~~~~~~g-~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        109 LNNIAVIYHKRG-EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHcC-ChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            999998887754 3              6789999999999999873

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=2.3e-11  Score=103.27  Aligned_cols=119  Identities=18%  Similarity=0.059  Sum_probs=107.6

Q ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 027087           82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD---REEAIAEMED  158 (228)
Q Consensus        82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~---~~~A~~~~~~  158 (228)
                      +.-.+.-++.||+|++.|..+|.+|..+|+++.|...|.+|+++.|++++   .+..+|.+++.+.+   ..++...+++
T Consensus       142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---ILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            34456677999999999999999999999999999999999999999999   89999999887643   5699999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +++.++.|+.+.+.|+..+++ .|+|.+|...|+..++..|.+...
T Consensus       219 al~~D~~~iral~lLA~~afe-~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFE-QGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCCCch
Confidence            999999999999999999999 469999999999999999877663

>PLN02789 farnesyltranstransferase

Probab=99.35  E-value=5.4e-11  Score=103.95  Aligned_cols=131  Identities=8%  Similarity=-0.098  Sum_probs=119.3

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH--HH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR--EE  151 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~--~~  151 (228)
                      ....+.++.....+++++|++..+|+.+|.++..+| ++++++..++++++.+|++..   +|++++.++...|+.  ++
T Consensus        50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq---aW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ---IWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH---HhHHHHHHHHHcCchhhHH
Confidence            345678888889999999999999999999999999 689999999999999999999   999999999999984  78


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      ++..+++++...+.+-.++..++.++... |+++++++.+.++|++||++..+...++
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~~d~~N~sAW~~R~  183 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLEEDVRNNSAWNQRY  183 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHCCCchhHHHHHH
Confidence            89999999999999999999999998885 5899999999999999999998766544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.34  E-value=1.2e-11  Score=105.71  Aligned_cols=129  Identities=22%  Similarity=0.133  Sum_probs=103.2

Q ss_pred             hCCCchHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           74 TYDPLTQAEKDASAAVSSR--VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~--p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      .....+.+......+....  ++++..++.+|.++.+.|++++|+..|+++++++|++..   ++..++.++...|++++
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---~~~~l~~~li~~~~~~~  198 (280)
T PF13429_consen  122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---ARNALAWLLIDMGDYDE  198 (280)
T ss_dssp             HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---HHHHHHHHHCTTCHHHH
T ss_pred             HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCChHH
Confidence            3444555555555544333  678889999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +...++......+.+|..+..+|.++... |++++|..+|+++++.+|+++....
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~~~~  252 (280)
T PF13429_consen  199 AREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPLWLL  252 (280)
T ss_dssp             HHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHhccc-ccccccccccccccccccccccccc
Confidence            88888887666788999999999999885 5899999999999999999888654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.34  E-value=4.2e-11  Score=93.44  Aligned_cols=93  Identities=12%  Similarity=-0.052  Sum_probs=86.4

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..++|...++-+...||.++..|+++|.++..+|+|++||+.|.+++.++|+++.   +++|.|.|++..|+.++
T Consensus        45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~---~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ---APWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHcCCHHH
Confidence            345677899999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH
Q 027087          152 AIAEMEDVSISLKGYP  167 (228)
Q Consensus       152 A~~~~~~al~~~~~~p  167 (228)
                      |++.|+.++.....+|
T Consensus       122 A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        122 AIKALKAVVRICGEVS  137 (157)
T ss_pred             HHHHHHHHHHHhccCh
Confidence            9999999977665555

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.33  E-value=3.4e-11  Score=115.35  Aligned_cols=129  Identities=20%  Similarity=0.137  Sum_probs=113.3

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.+...+...++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.   ++.++|.++...|+ ++|
T Consensus       747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~~~-~~A  822 (899)
T TIGR02917       747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV---VLNNLAWLYLELKD-PRA  822 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCc-HHH
Confidence            34455667777778888889999999999999999999999999999999999999988   89999999999999 889


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +..+++++...|.++..+..+|.+++. .|++++|+..|+++++++|.+...++
T Consensus       823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~  875 (899)
T TIGR02917       823 LEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLLRKAVNIAPEAAAIRY  875 (899)
T ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHH
Confidence            999999988888888888899998887 56899999999999999998777654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.32  E-value=3.7e-11  Score=106.52  Aligned_cols=105  Identities=14%  Similarity=0.072  Sum_probs=96.7

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|+..+..+++.+|+++.+++++|.++..+|++++|+..+++++.++|++..   +++++|.+++.+|++++|
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~---a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK---AYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---HHHHHHHHHHHhCCHHHH
Confidence            34466788999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVD  180 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~  180 (228)
                      +..|++++...|.++.++..++.+...+
T Consensus        90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         90 KAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998888877765443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=1.1e-11  Score=104.83  Aligned_cols=105  Identities=14%  Similarity=0.104  Sum_probs=96.1

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .+-....+|+..|..+|+++|+|+..|.|++.+|.++|.|+.|++..+.+|++||.+..   +|..+|.+|+.+|++++|
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk---ay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK---AYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH---HHHHHHHHHHccCcHHHH
Confidence            34466889999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVD  180 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~  180 (228)
                      ++.|+++|.+.|.++....+|..+-..+
T Consensus       169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  169 IEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            9999999998898887777777665443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.31  E-value=7.8e-11  Score=114.05  Aligned_cols=130  Identities=12%  Similarity=-0.013  Sum_probs=115.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +...+..+.++..+..+...+|..+.++.++|.++...|++++|+..|+++++++|+++.   ++.+++.++...|++++
T Consensus        25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~la~~l~~~g~~~e  101 (765)
T PRK10049         25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---YQRGLILTLADAGQYDE  101 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHH
Confidence            344566777888888888888999999999999999999999999999999999999998   89999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |+..+++++...|.+++ +..++.++.. .|++++|+..|+++++++|++...+.
T Consensus       102 A~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~l~~al~~~P~~~~~~~  154 (765)
T PRK10049        102 ALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRAMTQALPRAPQTQQYPT  154 (765)
T ss_pred             HHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999988899989 8889988877 46889999999999999999887644

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.29  E-value=4.9e-11  Score=97.44  Aligned_cols=97  Identities=14%  Similarity=-0.003  Sum_probs=89.4

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--HH
Q 027087          108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA--LL  185 (228)
Q Consensus       108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~--~~  185 (228)
                      ..++.++++..++++++.+|++.+   +|+++|.++...|++++|+..|++++...|.+++.+..+|.+++...|+  ++
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~---~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSE---QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            378889999999999999999999   9999999999999999999999999999999999999999987554555  59


Q ss_pred             HHHHHHHHHHhcCCCCCchhhh
Q 027087          186 LAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       186 ~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      +|++.++++++++|++..+++.
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~  149 (198)
T PRK10370        128 QTREMIDKALALDANEVTALML  149 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHH
Confidence            9999999999999999987663

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.28  E-value=1.6e-10  Score=91.63  Aligned_cols=109  Identities=17%  Similarity=0.086  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      .+..++++|.++..+|++++|+..|++++.+.|+.....++++++|.++...|++++|+..|++++...+.+++.+.+++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            36778999999999999999999999999998775433348999999999999999999999999888888888888888


Q ss_pred             HHHHHh------cCCHH-------HHHHHHHHHHhcCCCCCc
Q 027087          175 AALYVD------KHALL-------LAENQFTIATLLDPHYTD  203 (228)
Q Consensus       175 ~~l~~~------~~~~~-------~A~~~~~~al~l~P~~~~  203 (228)
                      .++...      .|+++       +|...|++++..+|....
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence            888732      24545       777777788888886543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=8.1e-11  Score=104.61  Aligned_cols=126  Identities=13%  Similarity=-0.053  Sum_probs=95.3

Q ss_pred             CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087           77 PLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM  156 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~  156 (228)
                      ..+.|+.++++++++||+...+|..+|.-|..+++...|+..|++|++++|.+..   ||+.+|.+|.-++-..=|+-.|
T Consensus       345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR---AWYGLGQaYeim~Mh~YaLyYf  421 (559)
T KOG1155|consen  345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR---AWYGLGQAYEIMKMHFYALYYF  421 (559)
T ss_pred             hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH---HHhhhhHHHHHhcchHHHHHHH
Confidence            3566677777777888888888888888888888888888888888888887777   7888888887777777788888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          157 EDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       157 ~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++++..-|.|+..|..||.++-. .++.++|++.|++++....-...+++
T Consensus       422 qkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dte~~~l~  470 (559)
T KOG1155|consen  422 QKALELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDTEGSALV  470 (559)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhccccchHHHH
Confidence            88877777777777778887766 34678888888888777666555444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.28  E-value=1.5e-11  Score=81.99  Aligned_cols=65  Identities=25%  Similarity=0.237  Sum_probs=54.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087          100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus       100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      +.+|..+...|++++|+..|+++++.+|++..   +++.+|.++..+|++++|+..|++++...|.+|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPE---AWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH---HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46788888899999999999999998888888   888999999999999999999998877777765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.27  E-value=1e-10  Score=97.15  Aligned_cols=114  Identities=25%  Similarity=0.240  Sum_probs=100.2

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE--  168 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~--  168 (228)
                      .++..+..++++|..+...|++++|+..|++++..+|+++....+++.+|.+++..|++++|+..|++++...|.++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            456778899999999999999999999999999999998743338899999999999999999999999888887774  


Q ss_pred             -HHHHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCCCCch
Q 027087          169 -VHAALAAALYVDK-------HALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       169 -~~~~la~~l~~~~-------~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                       +++.+|.+++...       |++++|++.|+++++.+|+....
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  151 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA  151 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence             6888899887741       57899999999999999998654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.6e-10  Score=102.78  Aligned_cols=122  Identities=16%  Similarity=0.004  Sum_probs=111.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ...+....+|+..++++++++|.|..+||.+|.+|.-++-+.=|+-.|++|+++.|++..   .|..+|.||.++++.++
T Consensus       374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR---lw~aLG~CY~kl~~~~e  450 (559)
T KOG1155|consen  374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR---LWVALGECYEKLNRLEE  450 (559)
T ss_pred             HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH---HHHHHHHHHHHhccHHH
Confidence            456667788888899999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      |+++|.+++.....+..++..+|.++-+++ ++++|...|++.++.
T Consensus       451 AiKCykrai~~~dte~~~l~~LakLye~l~-d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  451 AIKCYKRAILLGDTEGSALVRLAKLYEELK-DLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            999999997766666789999999887754 889999999999983

>PLN02789 farnesyltranstransferase

Probab=99.27  E-value=2e-10  Score=100.35  Aligned_cols=126  Identities=11%  Similarity=-0.035  Sum_probs=111.9

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDF--NKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~--~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      .++++.++..+++.+|++..+|+++|.++.+.|+.  ++++..++++++++|++..   +|.+++.++...|+++++++.
T Consensus        88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~---AW~~R~w~l~~l~~~~eeL~~  164 (320)
T PLN02789         88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH---AWSHRQWVLRTLGGWEDELEY  164 (320)
T ss_pred             HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhhhHHHHHHH
Confidence            46788888888999999999999999999999874  7889999999999999999   999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHh---cC---CHHHHHHHHHHHHhcCCCCCchhh
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVD---KH---ALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~---~~---~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +++++..++.|..+++.++.++...   ++   ..++.+++..++|.++|++..+..
T Consensus       165 ~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~  221 (320)
T PLN02789        165 CHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWR  221 (320)
T ss_pred             HHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHH
Confidence            9999999999999999999887664   11   125678888899999999988743

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=1.8e-11  Score=110.98  Aligned_cols=114  Identities=17%  Similarity=0.045  Sum_probs=105.6

Q ss_pred             HHHHHHhcCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087           84 DASAAVSSRV--SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus        84 ~~~~al~~~p--~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      .++.+...+|  .+++++..||.+|...|+|+.|+++|+.||..+|++..   .|+.+|-++....+.++|+..|++++.
T Consensus       416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~---lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL---LWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH---HHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            3455566777  78999999999999999999999999999999999999   999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          162 SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       162 ~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      +-|.+..++++||..+..+ |.|+||..+|-.||.+.++.
T Consensus       493 LqP~yVR~RyNlgIS~mNl-G~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  493 LQPGYVRVRYNLGISCMNL-GAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             cCCCeeeeehhhhhhhhhh-hhHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999995 59999999999999998873

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.26  E-value=2.2e-10  Score=109.83  Aligned_cols=130  Identities=19%  Similarity=0.085  Sum_probs=97.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.+...+.++++.+|++..+++.+|.++...|++++|+..++++++.+|++..   +++.+|.++...|++++|
T Consensus       136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A  212 (899)
T TIGR02917       136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD---ALLLKGDLLLSLGNIELA  212 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHhcCCHHHH
Confidence            34455667777777777777777777888888888888888888888888777777777   777778888888888888


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +..|++++...|.++..+..++.++.. .|++++|...++++++.+|++....+
T Consensus       213 ~~~~~~a~~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~  265 (899)
T TIGR02917       213 LAAYRKAIALRPNNPAVLLALATILIE-AGEFEEAEKHADALLKKAPNSPLAHY  265 (899)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCchHHH
Confidence            888888777777777777777777766 34677777777777777777665544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.24  E-value=3.2e-10  Score=100.55  Aligned_cols=128  Identities=16%  Similarity=0.084  Sum_probs=104.7

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      +.+..+.+...+..+++.+|++..+++.+|.++.+.|++++|++.|+++++.+|++..  .++..++.+|...|++++|+
T Consensus       192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS--EVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH--HHHHHHHHHHHHcCCHHHHH
Confidence            4566777888888888888988889999999999999999999999999998887642  16788889999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      ..+++++...|..+ ....++.++.. .|++++|+..|+++++.+|++....
T Consensus       270 ~~l~~~~~~~p~~~-~~~~la~~~~~-~g~~~~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        270 EFLRRALEEYPGAD-LLLALAQLLEE-QEGPEAAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             HHHHHHHHhCCCch-HHHHHHHHHHH-hCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            99999866666543 44677877777 4588999999999999999887654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.23  E-value=3.8e-10  Score=95.99  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 027087           96 ALELLEKGREL-QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHA  171 (228)
Q Consensus        96 a~a~~~lG~~~-~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~  171 (228)
                      ....|+.+..+ .+.|+|++|+..|++.++..|++.....+++.+|.+|+..|++++|+..|++++...|.++   ++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46788888876 5689999999999999999999864444999999999999999999999999988778764   8888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .+|.++.. .|++++|+..|+++++..|+...+..
T Consensus       222 klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        222 KVGVIMQD-KGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            89998887 56899999999999999998776543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.22  E-value=2.5e-10  Score=86.59  Aligned_cols=95  Identities=15%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +.+.+..+.+...+..+++.+|++...++++|.++...|++++|+..|+++++.+|++..   .++++|.++...|++++
T Consensus        27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~g~~~~  103 (135)
T TIGR02552        27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR---PYFHAAECLLALGEPES  103 (135)
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHcCCHHH
Confidence            344566788888889999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHH
Q 027087          152 AIAEMEDVSISLKGYPEV  169 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~  169 (228)
                      |+..|++++...|.++..
T Consensus       104 A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552       104 ALKALDLAIEICGENPEY  121 (135)
T ss_pred             HHHHHHHHHHhccccchH
Confidence            999999998887777653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.22  E-value=3.9e-10  Score=109.23  Aligned_cols=132  Identities=9%  Similarity=-0.077  Sum_probs=114.9

Q ss_pred             hCCCchHHHHHHHHHHhcCh-------------h--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRV-------------S--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG  138 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p-------------~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~  138 (228)
                      +.+..++|...+..+.+.+|             +  ...+++.+|.++...|++++|++.+++++...|++..   ++++
T Consensus       322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---l~~~  398 (765)
T PRK10049        322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---LRID  398 (765)
T ss_pred             hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Confidence            34556666666666666665             2  3467889999999999999999999999999999999   9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          139 RALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       139 la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      +|.++...|++++|++.+++++...|.++..++.++.++.. .+++++|+..++++++.+|+++.+....+
T Consensus       399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~  468 (765)
T PRK10049        399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQEWRQMDVLTDDVVAREPQDPGVQRLAR  468 (765)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999997777 56899999999999999999998755443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.5e-10  Score=102.85  Aligned_cols=111  Identities=23%  Similarity=0.181  Sum_probs=101.3

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      -.+|+-+..-...|+.+++.|||..|+..|.++|..+|+++.   .+.|+|.||..+|++..|+++.+..+.+.|.+..+
T Consensus       352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence            445666666778899999999999999999999999999999   99999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +..-|.+++.+. +|++|.+.|+++++.||+..+.
T Consensus       429 y~RKg~al~~mk-~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  429 YLRKGAALRAMK-EYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHhcCchhHHH
Confidence            988999999865 8999999999999999988774

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.20  E-value=2.5e-10  Score=98.49  Aligned_cols=149  Identities=23%  Similarity=0.217  Sum_probs=120.0

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      ....+|+..+-.+++.||++..++|.+|.+|..+|+-..|+..+.+++++.|++..   |+..+|.++.++|++++|+..
T Consensus        52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~---ARiQRg~vllK~Gele~A~~D  128 (504)
T KOG0624|consen   52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA---ARIQRGVVLLKQGELEQAEAD  128 (504)
T ss_pred             hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH---HHHHhchhhhhcccHHHHHHH
Confidence            44667788888999999999999999999999999999999999999999999999   999999999999999999999


Q ss_pred             HHHHHHhcCCCH---HHHHHHHHH------------HHHhcCCHHHHHHHHHHHHhcCCCCCchhhhh----hcCCCChh
Q 027087          156 MEDVSISLKGYP---EVHAALAAA------------LYVDKHALLLAENQFTIATLLDPHYTDLSYVK----DTKHWPPS  216 (228)
Q Consensus       156 ~~~al~~~~~~p---~~~~~la~~------------l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~----~~~~~~~~  216 (228)
                      |+.++...|.+-   ++...++.+            .+. +|+...+++...+.|++.|.+...+..+    .-+.-+..
T Consensus       129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~-~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~  207 (504)
T KOG0624|consen  129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG-SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKK  207 (504)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHH
Confidence            999966655332   332222211            222 4799999999999999999988865421    11234567


Q ss_pred             HHHHHHHhhccC
Q 027087          217 LVSSLRHFITLS  228 (228)
Q Consensus       217 ~~~~~~~~~~~~  228 (228)
                      .|.|++.+..||
T Consensus       208 AI~Dlk~askLs  219 (504)
T KOG0624|consen  208 AIHDLKQASKLS  219 (504)
T ss_pred             HHHHHHHHHhcc
Confidence            788888777664

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.20  E-value=5.2e-10  Score=93.13  Aligned_cols=111  Identities=18%  Similarity=0.078  Sum_probs=94.8

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      ..+|.+...+...|....+.|+|.+|+..++++..++|++..   +|+.+|.+|.+.|++++|...|.+++...+.+|.+
T Consensus        94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~  170 (257)
T COG5010          94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI  170 (257)
T ss_pred             ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh
Confidence            446667777777888899999999999999999999999998   89999999999999999999999998888888999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ..++|..++- .|+++.|+..+.++....+.+...
T Consensus       171 ~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad~~v  204 (257)
T COG5010         171 ANNLGMSLLL-RGDLEDAETLLLPAYLSPAADSRV  204 (257)
T ss_pred             hhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCchHH
Confidence            9999987777 568899999999888877766554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.20  E-value=9.2e-11  Score=100.20  Aligned_cols=122  Identities=20%  Similarity=0.033  Sum_probs=93.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..+.|+..+.++++.+|++..+...++.++...|+++++.+.++...+..|+++.   .+..+|.++..+|++++
T Consensus       156 ~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~---~~~~la~~~~~lg~~~~  232 (280)
T PF13429_consen  156 YEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD---LWDALAAAYLQLGRYEE  232 (280)
T ss_dssp             HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC---HCHHHHHHHHHHT-HHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH---HHHHHHHHhcccccccc
Confidence            456777899999999999999999999999999999999999999999998888899998   89999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      |+..|++++...|.||..+..++.++... |+.++|.+.++++++.
T Consensus       233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~-g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  233 ALEYLEKALKLNPDDPLWLLAYADALEQA-GRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            99999999999999999999999999885 5889999999988753

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.19  E-value=8.9e-10  Score=97.66  Aligned_cols=120  Identities=18%  Similarity=0.017  Sum_probs=63.8

Q ss_pred             chHHHHHHHHHHhcChhh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           78 LTQAEKDASAAVSSRVSD-----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .+.+...+...++.+|.+     ...+.++|.++...|++++|+..|+++++.+|++..   +++.+|.++...|++++|
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A  233 (389)
T PRK11788        157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR---ASILLGDLALAQGDYAAA  233 (389)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH---HHHHHHHHHHHCCCHHHH
Confidence            344444444444444332     123445555555666666666666666666666555   556666666666666666


Q ss_pred             HHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          153 IAEMEDVSISLKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       153 ~~~~~~al~~~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      ++.|++++...+.+ +..+..++.++.. .|++++|+..++++++.+|+.
T Consensus       234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        234 IEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAEGLEFLRRALEEYPGA  282 (389)
T ss_pred             HHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCc
Confidence            66666664333332 2334445555544 335566666666666666554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.9e-10  Score=104.20  Aligned_cols=129  Identities=24%  Similarity=0.179  Sum_probs=113.1

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHcCCH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN----YKDFAFSEYARVGRALALYEVGDR  149 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~~g~~  149 (228)
                      ..+...-|..++..++.+.|.|+..+..+|.+.+..+.|.+|+..|+.++..    .+....|+=.+.|+|.++.+++++
T Consensus       392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            4466777888889999999999999999999999999999999999999833    233222333689999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ++|+..|+++|...|.+++.+..+|.++..+ |+++.|+++|.++|.++|++..
T Consensus       472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~ll-gnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  472 EEAIDYYQKALLLSPKDASTHASIGYIYHLL-GNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             HHHHHHHHHHHHcCCCchhHHHHHHHHHHHh-cChHHHHHHHHHHHhcCCccHH
Confidence            9999999999999999999999999988885 5899999999999999999854

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.18  E-value=1.3e-10  Score=78.24  Aligned_cols=65  Identities=26%  Similarity=0.154  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      .|+++|.+++..|++++|+..|++++...|.++.+++++|.++..+++++++|++.|+++++++|
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            89999999999999999999999999999999999999999999854379999999999999998

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.17  E-value=5.1e-09  Score=88.17  Aligned_cols=130  Identities=12%  Similarity=-0.000  Sum_probs=104.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALE---LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD-  148 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a---~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~-  148 (228)
                      ...+..+.|+..+..++...|....+   .+++|.++++.|++++|+..|++.++++|+++.+.|+++.+|.+++..++ 
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~  122 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS  122 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence            34466778888888888888887655   48999999999999999999999999999999999999999998765541 


Q ss_pred             -----------------HHHHHHHHHHHHHhcCCCH---HHHHH--------------HHHHHHHhcCCHHHHHHHHHHH
Q 027087          149 -----------------REEAIAEMEDVSISLKGYP---EVHAA--------------LAAALYVDKHALLLAENQFTIA  194 (228)
Q Consensus       149 -----------------~~~A~~~~~~al~~~~~~p---~~~~~--------------la~~l~~~~~~~~~A~~~~~~a  194 (228)
                                       ..+|+..|++.+...|+.+   ++...              .|..++. .|.|..|+.-++.+
T Consensus       123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~-~~~y~AA~~r~~~v  201 (243)
T PRK10866        123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK-RGAYVAVVNRVEQM  201 (243)
T ss_pred             hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHH
Confidence                             3578899999988888764   33221              2333444 57899999999999


Q ss_pred             HhcCCCCCc
Q 027087          195 TLLDPHYTD  203 (228)
Q Consensus       195 l~l~P~~~~  203 (228)
                      ++-.|+...
T Consensus       202 ~~~Yp~t~~  210 (243)
T PRK10866        202 LRDYPDTQA  210 (243)
T ss_pred             HHHCCCCch
Confidence            999998765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.17  E-value=7.8e-10  Score=92.09  Aligned_cols=116  Identities=17%  Similarity=0.089  Sum_probs=102.8

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+....|+..++++.+++|+|+++|..+|.+|.+.|++++|...|.+++++.|+.+.   +..|+|..++-.||++.|.
T Consensus       112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~---~~nNlgms~~L~gd~~~A~  188 (257)
T COG5010         112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS---IANNLGMSLLLRGDLEDAE  188 (257)
T ss_pred             HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch---hhhhHHHHHHHcCCHHHHH
Confidence            3455677777888899999999999999999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTI  193 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~  193 (228)
                      ..+.++...-+.++.+..+++.+... .|++++|+..-.+
T Consensus       189 ~lll~a~l~~~ad~~v~~NLAl~~~~-~g~~~~A~~i~~~  227 (257)
T COG5010         189 TLLLPAYLSPAADSRVRQNLALVVGL-QGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhh-cCChHHHHhhccc
Confidence            99999955555678889999998877 4688999885543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.17  E-value=1.4e-09  Score=84.30  Aligned_cols=116  Identities=20%  Similarity=0.173  Sum_probs=93.6

Q ss_pred             chHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      ...+...+...+..+|+.   ..+.+.+|.++...|++++|+..|++++...|+......+.+.+|.++...|++++|+.
T Consensus        27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~  106 (145)
T PF09976_consen   27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALA  106 (145)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            334444566677777776   67789999999999999999999999999887764333488999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIAT  195 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al  195 (228)
                      .++.+ ...+..+.++..+|.++.. .|++++|+..|+++|
T Consensus       107 ~L~~~-~~~~~~~~~~~~~Gdi~~~-~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  107 TLQQI-PDEAFKALAAELLGDIYLA-QGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHhc-cCcchHHHHHHHHHHHHHH-CCCHHHHHHHHHHhC
Confidence            99875 2222335777888999988 568999999999875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.13  E-value=2.9e-10  Score=79.86  Aligned_cols=84  Identities=21%  Similarity=0.209  Sum_probs=66.9

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Q 027087          108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLA  187 (228)
Q Consensus       108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A  187 (228)
                      .+|+|+.|+..|+++++.+|++.... .++++|.+++++|+|++|+..+++ ....+.+++.++.+|.+++.+ |++++|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~-~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l-~~y~eA   77 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSA-YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL-GKYEEA   77 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHH-HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT-T-HHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHH-HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh-CCHHHH
Confidence            36899999999999999999642211 578899999999999999999988 455777778888889989885 589999


Q ss_pred             HHHHHHH
Q 027087          188 ENQFTIA  194 (228)
Q Consensus       188 ~~~~~~a  194 (228)
                      +..|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9988875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=6.6e-10  Score=99.44  Aligned_cols=123  Identities=15%  Similarity=0.080  Sum_probs=112.1

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ...+...++.+|.++|.+...|..+|.+|....+.++-...|++|..+||++++   .|+.+|.+++-+++|++|++.|+
T Consensus       342 ~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d---vYyHRgQm~flL~q~e~A~aDF~  418 (606)
T KOG0547|consen  342 SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD---VYYHRGQMRFLLQQYEEAIADFQ  418 (606)
T ss_pred             chhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc---hhHhHHHHHHHHHHHHHHHHHHH
Confidence            444555667788999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +++.+.|.+.-++..++.++|.++ ++++++..|+.+++.-|+-++.
T Consensus       419 Kai~L~pe~~~~~iQl~~a~Yr~~-k~~~~m~~Fee~kkkFP~~~Ev  464 (606)
T KOG0547|consen  419 KAISLDPENAYAYIQLCCALYRQH-KIAESMKTFEEAKKKFPNCPEV  464 (606)
T ss_pred             HHhhcChhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCchH
Confidence            997777777788889999999954 8999999999999999998875

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.12  E-value=2e-09  Score=99.75  Aligned_cols=126  Identities=13%  Similarity=-0.006  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCH
Q 027087           80 QAEKDASAAVSSRVSDALELLEKGRELQAI--------GDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDR  149 (228)
Q Consensus        80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~--------g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~  149 (228)
                      .+...+.+++++||+++.++-.++.++...        ++..++.+..++++.+  +|.++.   ++..+|..+...|++
T Consensus       360 ~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~---~~~ala~~~~~~g~~  436 (517)
T PRK10153        360 KASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR---IYEILAVQALVKGKT  436 (517)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH---HHHHHHHHHHhcCCH
Confidence            444555677899999999999988877553        2355667777777775  677777   889999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhc
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDT  210 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~  210 (228)
                      ++|...+++++...+ +..++..+|.++.. .|++++|++.|++|++++|.++..+|.+.+
T Consensus       437 ~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~  495 (517)
T PRK10153        437 DEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAYSTAFNLRPGENTLYWIENL  495 (517)
T ss_pred             HHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCchHHHHHhc
Confidence            999999999977776 57889999998877 569999999999999999999988887664

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.11  E-value=2.6e-10  Score=75.97  Aligned_cols=65  Identities=32%  Similarity=0.308  Sum_probs=58.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      +.+|..+++.|++++|++.|++++...|.++++++.+|.+++. .|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence            4689999999999999999999988888889999999999998 5699999999999999999863

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.10  E-value=5.6e-10  Score=99.95  Aligned_cols=72  Identities=17%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS  162 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  162 (228)
                      .+|+++.+++|+|.+|..+|+|++|+..|+++++++|++....++|+|+|.+|..+|++++|+.+|++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999999862235999999999999999999999999554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=2.7e-09  Score=88.68  Aligned_cols=131  Identities=19%  Similarity=0.132  Sum_probs=118.9

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ......+.|+..+...++.||.|...+-..-.+...+|+.-+||+.+..-++.-+++.+   +|..++.+|...|+|++|
T Consensus        97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E---AW~eLaeiY~~~~~f~kA  173 (289)
T KOG3060|consen   97 EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE---AWHELAEIYLSEGDFEKA  173 (289)
T ss_pred             HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhHhHHHHH
Confidence            34466888999999999999999999988888888999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchhh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKH--ALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~--~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .-+|++++-..|.+|-.+..++.++|.+||  +++-|+++|.++++++|++....+
T Consensus       174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF  229 (289)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence            999999999999999888889999988874  678999999999999997776544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=5.5e-09  Score=93.55  Aligned_cols=127  Identities=15%  Similarity=0.018  Sum_probs=108.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ......+.+....+..+...|+|+-.+-..|.++...++.++|++.+++++.++|+...   .++++|.+|.+.|++.+|
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---l~~~~a~all~~g~~~ea  393 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL---LQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---HHHHHHHHHHhcCChHHH
Confidence            34566778888888899999999999999999999999999999999999999999988   899999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +..+++.+..+|.||+.|..|+.++-.+| +..++...+.+...+.-++..
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g-~~~~a~~A~AE~~~~~G~~~~  443 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELG-NRAEALLARAEGYALAGRLEQ  443 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhC-chHHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999998877754 445555555555554444333

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.05  E-value=7.7e-09  Score=77.77  Aligned_cols=99  Identities=20%  Similarity=0.106  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG---YPEVHAAL  173 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~p~~~~~l  173 (228)
                      .++|+++.++-..|+.++|+..|+++++...+...-..+++++|.++..+|++++|+..+++++...|.   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999987665433348999999999999999999999999877777   44666777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Q 027087          174 AAALYVDKHALLLAENQFTIATL  196 (228)
Q Consensus       174 a~~l~~~~~~~~~A~~~~~~al~  196 (228)
                      +.+++.. |+.++|++.+-.++.
T Consensus        82 Al~L~~~-gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNL-GRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHC-CCHHHHHHHHHHHHH
Confidence            8888885 588999999988775

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.05  E-value=7e-09  Score=100.65  Aligned_cols=126  Identities=8%  Similarity=-0.105  Sum_probs=75.2

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      +.+..+.|+..+.++++.+|+++...+.+..++...|++++|+..+++++  +|++.. .+....+|.++..+|++++|+
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHH
Confidence            33444577777777777777775333366666666666666666666666  443333 012333355666666666666


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +.|++++...|.+++++..++..+.. .++.++|++.+++++..+|+...
T Consensus       123 ely~kaL~~dP~n~~~l~gLa~~y~~-~~q~~eAl~~l~~l~~~dp~~~~  171 (822)
T PRK14574        123 ALWQSSLKKDPTNPDLISGMIMTQAD-AGRGGVVLKQATELAERDPTVQN  171 (822)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHhcccCcchHH
Confidence            66666666666666666665554444 34566666666666666666433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.04  E-value=7.5e-09  Score=96.77  Aligned_cols=129  Identities=17%  Similarity=0.029  Sum_probs=116.0

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+++.-....+-.++|..+..|+..|..+..+|++++|.+.|..|+.+||++..   ....+|.++.+.|+-.-|.
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---s~~Ala~~lle~G~~~la~  738 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---SMTALAELLLELGSPRLAE  738 (799)
T ss_pred             hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhCCcchHH
Confidence            4444555555566677889999999999999999999999999999999999999999   9999999999999988777


Q ss_pred             H--HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          154 A--EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       154 ~--~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .  .+..+++.+|.++++|+++|.++.. .|+.++|.+.|..++++++..+...|
T Consensus       739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd~~~Aaecf~aa~qLe~S~PV~pF  792 (799)
T KOG4162|consen  739 KRSLLSDALRLDPLNHEAWYYLGEVFKK-LGDSKQAAECFQAALQLEESNPVLPF  792 (799)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccchHHHHHHHHHHHhhccCCCcccc
Confidence            7  9999999999999999999999988 56889999999999999999887665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.04  E-value=8e-09  Score=75.88  Aligned_cols=98  Identities=20%  Similarity=0.200  Sum_probs=84.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR  149 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~  149 (228)
                      ...+..+.++..+..+++.+|++   ..+++.+|.++...|++++|+..|++++..+|++.....+++++|.++..+|++
T Consensus        13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~   92 (119)
T TIGR02795        13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK   92 (119)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh
Confidence            44567788899999999888876   678999999999999999999999999999998632222899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHH
Q 027087          150 EEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~  170 (228)
                      ++|+..+++++...|.++.+.
T Consensus        93 ~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        93 EKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHHHHHHHCcCChhHH
Confidence            999999999988877776443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.03  E-value=6.2e-09  Score=91.25  Aligned_cols=106  Identities=18%  Similarity=-0.003  Sum_probs=91.6

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE-  168 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~-  168 (228)
                      ..+|+....+..+|.++..+|++++|+..++++++++|++..   ++..+|.++++.|++++|+..+++++...+.++. 
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~  184 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML  184 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence            456777778888999999999999999999999999999998   8999999999999999999999999766654442 


Q ss_pred             ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          169 ---VHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       169 ---~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                         .+..++.++.. .|++++|+..|++++...|
T Consensus       185 ~~~~~~~la~~~~~-~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         185 RGHNWWHLALFYLE-RGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             hHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcccc
Confidence               34567887777 5699999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.03  E-value=1.1e-09  Score=73.40  Aligned_cols=67  Identities=24%  Similarity=0.264  Sum_probs=58.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087          106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus       106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      +...|+|++|+..|++++..+|++..   +++.+|.+|.+.|++++|...+++++...|.++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE---ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH---HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            35789999999999999999999999   99999999999999999999999998877777776665543

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.03  E-value=8.8e-09  Score=84.36  Aligned_cols=110  Identities=25%  Similarity=0.281  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHA  171 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~  171 (228)
                      ++..+|..|..+...|+|++|+..|++++...|+...+..+.+.+|.+++..|++++|+..+++.+...|.++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            4678999999999999999999999999999999887777999999999999999999999999999999876   6788


Q ss_pred             HHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCch
Q 027087          172 ALAAALYVDK----------HALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       172 ~la~~l~~~~----------~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .+|.+.+.+.          +...+|+..|+..++..|+..-+
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~  126 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA  126 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence            8888876643          23468999999999999998764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.02  E-value=2.4e-09  Score=72.71  Aligned_cols=68  Identities=22%  Similarity=0.232  Sum_probs=61.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087          103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL  173 (228)
Q Consensus       103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l  173 (228)
                      ..++.+.++|++|++.+++++.++|+++.   .++.+|.+++.+|++++|++.|++++...|.++++...+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPE---LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccch---hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            56889999999999999999999999999   999999999999999999999999988888887665543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.02  E-value=6.8e-09  Score=87.30  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHAALA  174 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~la  174 (228)
                      -.|+.+.-+++.|||.+|+..|..-+...|+......|+|.||.+++.+|+|++|...|..+++..|.+|   ++++-+|
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            3899999999999999999999999999999876666999999999999999999999999988888764   9999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++..++ +.++|...|+++++..|+...+..
T Consensus       223 ~~~~~l~-~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         223 VSLGRLG-NTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHHCCCCHHHHH
Confidence            9999965 789999999999999998776543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.00  E-value=1.3e-09  Score=76.41  Aligned_cols=80  Identities=16%  Similarity=0.120  Sum_probs=70.0

Q ss_pred             CCchHHHHHHHHHHhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVS--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ...+.|+..+.++++.+|.  +...++.+|.++++.|+|++|+..+++ ...++.+..   .++.+|.+++++|++++|+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~---~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD---IHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH---HHHHHHHHHHHTT-HHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH---HHHHHHHHHHHhCCHHHHH
Confidence            3457788889999988884  677889999999999999999999999 888998888   7888899999999999999


Q ss_pred             HHHHHH
Q 027087          154 AEMEDV  159 (228)
Q Consensus       154 ~~~~~a  159 (228)
                      +.|+++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=3.5e-09  Score=91.02  Aligned_cols=129  Identities=12%  Similarity=-0.026  Sum_probs=108.5

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      .+-+..++++.++.--.+++.+.|+|.+....+++|-++..|++|+...-+....+..|||+|.+....||+.-|..+|+
T Consensus       340 PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr  419 (478)
T KOG1129|consen  340 PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR  419 (478)
T ss_pred             hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence            45566667777777777778889999999999999999999999998876555545589999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      -++.-++++.+++++|+..-.. .|++++|+..+..+-+++|+..+..+.
T Consensus       420 laL~~d~~h~ealnNLavL~~r-~G~i~~Arsll~~A~s~~P~m~E~~~N  468 (478)
T KOG1129|consen  420 LALTSDAQHGEALNNLAVLAAR-SGDILGARSLLNAAKSVMPDMAEVTTN  468 (478)
T ss_pred             HHhccCcchHHHHHhHHHHHhh-cCchHHHHHHHHHhhhhCccccccccc
Confidence            9977777778999999986555 678999999999999999998876553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.99  E-value=1.3e-09  Score=94.15  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY  178 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~  178 (228)
                      .-..|+-|+++|+|++||++|.+++..+|.++-   .+.|++.+|+++++|..|..+++.++.++..+..++..++.+-.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---YHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE  176 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCcc---chhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999998   79999999999999999999999998888788888888888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          179 VDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       179 ~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      .+| ...||.+.++.+|++.|+..+..
T Consensus       177 ~Lg-~~~EAKkD~E~vL~LEP~~~ELk  202 (536)
T KOG4648|consen  177 SLG-NNMEAKKDCETVLALEPKNIELK  202 (536)
T ss_pred             HHh-hHHHHHHhHHHHHhhCcccHHHH
Confidence            854 78999999999999999966643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.97  E-value=3.1e-09  Score=91.89  Aligned_cols=109  Identities=22%  Similarity=0.220  Sum_probs=100.5

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~  170 (228)
                      .+|.+.+-++.+|..+...|++..|+..|..|++.+|++..   +++.+|.+|..+|+...|+..+.+++.+-|..-.++
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~---aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR  109 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ---AIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR  109 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH---HHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence            46788889999999999999999999999999999999999   999999999999999999999999977766667888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          171 AALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ...|.++..+ |.+++|+..|+.+|.-+|+...
T Consensus       110 iQRg~vllK~-Gele~A~~DF~~vl~~~~s~~~  141 (504)
T KOG0624|consen  110 IQRGVVLLKQ-GELEQAEADFDQVLQHEPSNGL  141 (504)
T ss_pred             HHhchhhhhc-ccHHHHHHHHHHHHhcCCCcch
Confidence            9999999995 5899999999999999997654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.97  E-value=1.2e-08  Score=80.17  Aligned_cols=106  Identities=11%  Similarity=-0.050  Sum_probs=95.8

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      .+..+.-+..|..|--++.+|++++|+..|+-....+|.+.+   -++.+|.++..+|+|++|+..|..+....++||..
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            566777788899999999999999999999999999999998   59999999999999999999999998888899999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      .+..|.|+..++ +.++|+..|+.+++ .|.
T Consensus       108 ~f~agqC~l~l~-~~~~A~~~f~~a~~-~~~  136 (165)
T PRK15331        108 VFFTGQCQLLMR-KAAKARQCFELVNE-RTE  136 (165)
T ss_pred             cchHHHHHHHhC-CHHHHHHHHHHHHh-Ccc
Confidence            999999999965 78999999999998 444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.95  E-value=3.6e-08  Score=75.79  Aligned_cols=110  Identities=21%  Similarity=0.207  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHA  171 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~  171 (228)
                      .+..+|+.|....+.|+|++|++.|+.+....|...-+.-+.+.+|.+|++.|++++|+..+++.+++.|.+|   -+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            3567899999999999999999999999999998765556899999999999999999999999999999987   4566


Q ss_pred             HHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCch
Q 027087          172 ALAAALYVDK--------------HALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       172 ~la~~l~~~~--------------~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ..|.+.+.+.              +...+|...|+++++..|+..-+
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            6787777743              12688999999999999987643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.95  E-value=1.9e-08  Score=97.64  Aligned_cols=127  Identities=11%  Similarity=0.020  Sum_probs=99.4

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+.|+..+.+++..+|.....+..+|.++..+|+|++|++.|+++++.+|+++.   ++..++.++.+.|+.++|+
T Consensus        80 ~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~---~l~gLa~~y~~~~q~~eAl  156 (822)
T PRK14574         80 WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD---LISGMIMTQADAGRGGVVL  156 (822)
T ss_pred             HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHhhcCCHHHHH
Confidence            3455556666666666444555666666688999999999999999999999999999   8999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVD-KHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~-~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +.++++   .+.+|+....++.++... .++..+|++.|+++++++|++.+...
T Consensus       157 ~~l~~l---~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~  207 (822)
T PRK14574        157 KQATEL---AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLK  207 (822)
T ss_pred             HHHHHh---cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999   666765444444443331 24556799999999999999988643

>PRK11906 transcriptional regulator; Provisional

Probab=98.95  E-value=1.9e-08  Score=90.29  Aligned_cols=123  Identities=11%  Similarity=-0.071  Sum_probs=100.5

Q ss_pred             chHHHHHHHHHH---hcChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087           78 LTQAEKDASAAV---SSRVSDALELLEKGRELQAI---------GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        78 ~~~a~~~~~~al---~~~p~~a~a~~~lG~~~~~~---------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~  145 (228)
                      ...|...+.+++   ++||+.+.+|..++.++...         .+-.+|.+.-++|++++|+|+.   ++..+|.++..
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~---a~~~~g~~~~~  350 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK---ILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHh
Confidence            345555678888   88999888888887777533         3456788888999999999998   89999999888


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .|+++.|+..|++++...|+++.+++..|.+... .|+.++|.++.+++++++|.-..+
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCchhhHH
Confidence            8899999999999988888888888888887777 568899999999999999875544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.94  E-value=2.4e-08  Score=85.03  Aligned_cols=94  Identities=19%  Similarity=0.106  Sum_probs=84.1

Q ss_pred             CCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      +..+.++..+...++..|++   +.++|.+|.+|+..|++++|+..|+++++..|+++....+++.+|.++..+|++++|
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A  236 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA  236 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence            45778888889999999998   589999999999999999999999999999999876666999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHH
Q 027087          153 IAEMEDVSISLKGYPEV  169 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~  169 (228)
                      ++.|++++...|....+
T Consensus       237 ~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        237 KAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHCcCCHHH
Confidence            99999997777766533

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.93  E-value=2.1e-08  Score=87.88  Aligned_cols=129  Identities=14%  Similarity=-0.086  Sum_probs=99.8

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE-NYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ...+..+.+...+.++++.+|++..++.. +..+...|++..+.....+++. ..|.++...+++.++|.++..+|++++
T Consensus        54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~  132 (355)
T cd05804          54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR  132 (355)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence            34466777888888889999999888775 6666555555544444444442 233334333478899999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      |+..+++++...|.++.++..++.+++. .|++++|+..+++++...|....
T Consensus       133 A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~  183 (355)
T cd05804         133 AEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSM  183 (355)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcc
Confidence            9999999999999999999999999988 56999999999999999886443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.3e-08  Score=89.65  Aligned_cols=108  Identities=19%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF------------SEYARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~------------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      +...-..|+.+++.|+|..|+..|++++..-.....            ---.+.|++.|+.++++|.+|+...+++|...
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            344567799999999999999999998766432110            00147899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +.|+.+++..|.++..+ ++|+.|+..|+++++++|++..+
T Consensus       288 ~~N~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~  327 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAA  327 (397)
T ss_pred             CCchhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHH
Confidence            99999999999999884 58999999999999999998765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.91  E-value=3.8e-08  Score=82.89  Aligned_cols=110  Identities=14%  Similarity=0.060  Sum_probs=92.8

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVH  170 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~  170 (228)
                      .++..+|..|..+...|+|++|++.|++++...|+.+....+.+++|.++++.|++++|+..+++.+...|.+|   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            45667899999999999999999999999999999987556679999999999999999999999999999886   667


Q ss_pred             HHHHHHHHHhc-----------------CCHHHHHHHHHHHHhcCCCCCc
Q 027087          171 AALAAALYVDK-----------------HALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       171 ~~la~~l~~~~-----------------~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +.+|.+.+..+                 ....+|...|++.++..|+..-
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y  159 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY  159 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence            77787643321                 1135788999999999998654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.90  E-value=8.8e-09  Score=98.33  Aligned_cols=126  Identities=23%  Similarity=0.183  Sum_probs=114.0

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      .+-|++.+..+++.||.|.-+-..+|.++...|++.+|++.|.++.+--.++.+   +|.|+|.||..+|+|-.|++.|+
T Consensus       628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d---v~lNlah~~~e~~qy~~AIqmYe  704 (1018)
T KOG2002|consen  628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED---VWLNLAHCYVEQGQYRLAIQMYE  704 (1018)
T ss_pred             HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc---eeeeHHHHHHHHHHHHHHHHHHH
Confidence            456777778888999999999999999999999999999999999998888888   99999999999999999999999


Q ss_pred             HHHHhcC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          158 DVSISLK--GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       158 ~al~~~~--~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      .++...-  +++++...||.+++.. |.+.+|.++...++.+.|.+....|.
T Consensus       705 ~~lkkf~~~~~~~vl~~Lara~y~~-~~~~eak~~ll~a~~~~p~~~~v~FN  755 (1018)
T KOG2002|consen  705 NCLKKFYKKNRSEVLHYLARAWYEA-GKLQEAKEALLKARHLAPSNTSVKFN  755 (1018)
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCCccchHHhH
Confidence            9976544  3579999999999995 57999999999999999999987774

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.86  E-value=9.5e-09  Score=92.16  Aligned_cols=73  Identities=16%  Similarity=0.027  Sum_probs=66.2

Q ss_pred             hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC
Q 027087          125 NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV---HAALAAALYVDKHALLLAENQFTIATLL-DPH  200 (228)
Q Consensus       125 l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~---~~~la~~l~~~~~~~~~A~~~~~~al~l-~P~  200 (228)
                      .+|+++.   +++|+|.+|+.+|+|++|+..|++++...|+++++   ++++|.+|..+ |++++|+++|++++++ ++.
T Consensus        70 ~dP~~a~---a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALelsn~~  145 (453)
T PLN03098         70 ADVKTAE---DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRDYNLK  145 (453)
T ss_pred             CCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcchh
Confidence            4899999   99999999999999999999999999999998865   99999999885 6899999999999998 444


Q ss_pred             C
Q 027087          201 Y  201 (228)
Q Consensus       201 ~  201 (228)
                      +
T Consensus       146 f  146 (453)
T PLN03098        146 F  146 (453)
T ss_pred             H
Confidence            4

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.86  E-value=2.9e-08  Score=67.78  Aligned_cols=84  Identities=21%  Similarity=0.208  Sum_probs=77.6

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      .+..+.+...+..+++.+|++...++.+|.++...|++++|+..|++++...|.+..   .+..+|.++...|++++|..
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~   89 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK---AYYNLGLAYYKLGKYEEALE   89 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh---HHHHHHHHHHHHHhHHHHHH
Confidence            455677888888999999999999999999999999999999999999999999998   89999999999999999999


Q ss_pred             HHHHHHH
Q 027087          155 EMEDVSI  161 (228)
Q Consensus       155 ~~~~al~  161 (228)
                      .+++++.
T Consensus        90 ~~~~~~~   96 (100)
T cd00189          90 AYEKALE   96 (100)
T ss_pred             HHHHHHc
Confidence            9999944

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.85  E-value=2.7e-08  Score=81.32  Aligned_cols=118  Identities=19%  Similarity=0.136  Sum_probs=101.5

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL  173 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l  173 (228)
                      ..+..+|.+|+.|-..|-++-|.-.|.+++.+.|+-+.   +++-+|.-+...|+|+.|.+.|+.++..+|.+--++.++
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            45778999999999999999999999999999999999   899999999999999999999999988878777888899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhh--hhhcCCCCh
Q 027087          174 AAALYVDKHALLLAENQFTIATLLDPHYTD-LSY--VKDTKHWPP  215 (228)
Q Consensus       174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~-~~~--~~~~~~~~~  215 (228)
                      |..+|. +|++.-|.+.+.+--+-||+++- +.|  +.+.+.-|.
T Consensus       140 gi~~YY-~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~  183 (297)
T COG4785         140 GIALYY-GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK  183 (297)
T ss_pred             ceeeee-cCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence            998888 78999999999999999998885 333  344344443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.85  E-value=7.8e-08  Score=72.79  Aligned_cols=104  Identities=22%  Similarity=0.159  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP----EVHAALA  174 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----~~~~~la  174 (228)
                      +-..|.++...|+.+.|++.|.+++.+.|..+.   +|+|++.++.-+|+.++|+..+++++.......    .++...|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERAS---AYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchH---hhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            455689999999999999999999999999999   999999999999999999999999966544322    5566677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++.. .|+.+.|+..|+.+-++...+.....
T Consensus       123 ~lyRl-~g~dd~AR~DFe~AA~LGS~FAr~QL  153 (175)
T KOG4555|consen  123 LLYRL-LGNDDAARADFEAAAQLGSKFAREQL  153 (175)
T ss_pred             HHHHH-hCchHHHHHhHHHHHHhCCHHHHHHH
Confidence            75555 56779999999999999888776544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.85  E-value=1.8e-08  Score=69.37  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENY----KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS  162 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~----P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  162 (228)
                      |+-+.+++++|.++..+|+|++|++.|++++++.    ++++...-+++++|.++..+|++++|++.+++++..
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5667889999999999999999999999999763    222333447899999999999999999999999543

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.83  E-value=1.2e-07  Score=90.15  Aligned_cols=120  Identities=17%  Similarity=0.073  Sum_probs=111.5

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.|...+..+|+++|.++.+|+.+|.+|.++||.+++...+-.|--++|++.+   -|..++....++|++++|+-+
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---LWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHhcccHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999   899999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      |.+|+...|.+-+..+....++.. .|++..|.+.|.+++.++|
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~-~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQK-TGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHH-hChHHHHHHHHHHHHhhCC
Confidence            999987777777777778887766 4588999999999999999

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=1.3e-08  Score=90.73  Aligned_cols=122  Identities=21%  Similarity=0.192  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMED  158 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~  158 (228)
                      ..+..+++.++.+|.-++.++.|.|++.+..|++++|.+.|++++.-+..-.+   +++|+|+.+..+|+.++|+.+|-+
T Consensus       473 ~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e---alfniglt~e~~~~ldeald~f~k  549 (840)
T KOG2003|consen  473 ADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE---ALFNIGLTAEALGNLDEALDCFLK  549 (840)
T ss_pred             hHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH---HHHHhcccHHHhcCHHHHHHHHHH
Confidence            34455556677888888999999999999999999999999999998888888   999999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +-..+.++.++++.++.+|-. ..+..+|++++.++.++-|+++..
T Consensus       550 lh~il~nn~evl~qianiye~-led~aqaie~~~q~~slip~dp~i  594 (840)
T KOG2003|consen  550 LHAILLNNAEVLVQIANIYEL-LEDPAQAIELLMQANSLIPNDPAI  594 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHH-hhCHHHHHHHHHHhcccCCCCHHH
Confidence            877788888999999987766 457799999999999999988753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.2e-08  Score=88.74  Aligned_cols=116  Identities=14%  Similarity=0.105  Sum_probs=98.3

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      +......|+..+..+|..+|+|+..|.|++.+|.+.|.+..|+...+++++++|++..   +|...|.++..+.+|++|+
T Consensus       370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k---gy~RKg~al~~mk~ydkAl  446 (539)
T KOG0548|consen  370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK---AYLRKGAALRAMKEYDKAL  446 (539)
T ss_pred             hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH---HHHHHHHHHHHHHHHHHHH
Confidence            4456777888889999999999999999999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTI  193 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~  193 (228)
                      +.|++++..+|.+.++...+..++-.+.++ ..-.+.+++
T Consensus       447 eay~eale~dp~~~e~~~~~~rc~~a~~~~-~~~ee~~~r  485 (539)
T KOG0548|consen  447 EAYQEALELDPSNAEAIDGYRRCVEAQRGD-ETPEETKRR  485 (539)
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHhhcC-CCHHHHHHh
Confidence            999999777776667777777776653322 344444444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.3e-08  Score=89.61  Aligned_cols=123  Identities=16%  Similarity=0.092  Sum_probs=88.5

Q ss_pred             CchHHHHHHHHHHhcChhhHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHH
Q 027087           77 PLTQAEKDASAAVSSRVSDAL------------ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-EYARVGRALAL  143 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~a~------------a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-~~a~~~la~~~  143 (228)
                      ..+-++..+.++++++|++..            .+-+.|+-.++.|+|.+|.+.|..+|.++|++... ...|.|++.+.
T Consensus       218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~  297 (486)
T KOG0550|consen  218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN  297 (486)
T ss_pred             chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence            345566667777778887653            34556888888888888888888888888876531 12367888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          144 YEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ..+|+..+|+...+.++.+++.+-.++...|.++..+ +++++|.+.|+++++..-+
T Consensus       298 ~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l-e~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  298 IRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL-EKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             cccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccc
Confidence            8888888888888888555444556777777777664 4788888888888877665

>PRK11906 transcriptional regulator; Provisional

Probab=98.80  E-value=8.9e-08  Score=86.10  Aligned_cols=112  Identities=13%  Similarity=-0.053  Sum_probs=91.2

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ...+...+++++++||.|+.+++.+|.++...|+++.|+..|++|+.++|+++.   +++..|+++.-.|+.++|++.++
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~---~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS---LYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH---HHHHHHHHHHHcCCHHHHHHHHH
Confidence            456677788899999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHhcCCCHHHHH-HHHH-HHHHhcCCHHHHHHHHHHH
Q 027087          158 DVSISLKGYPEVHA-ALAA-ALYVDKHALLLAENQFTIA  194 (228)
Q Consensus       158 ~al~~~~~~p~~~~-~la~-~l~~~~~~~~~A~~~~~~a  194 (228)
                      +++++.|.--.+-. .+-. .|+.  ...++|+..|-+-
T Consensus       397 ~alrLsP~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  433 (458)
T PRK11906        397 KSLQLEPRRRKAVVIKECVDMYVP--NPLKNNIKLYYKE  433 (458)
T ss_pred             HHhccCchhhHHHHHHHHHHHHcC--CchhhhHHHHhhc
Confidence            99555554432222 2222 2333  3568888877543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.77  E-value=1.3e-07  Score=74.88  Aligned_cols=84  Identities=21%  Similarity=0.189  Sum_probs=70.0

Q ss_pred             hhCCCchHHHHHHHHHHhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-----
Q 027087           73 ATYDPLTQAEKDASAAVSSRVS---DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALY-----  144 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~---~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~-----  144 (228)
                      ...+..+.+...+..++.+.++   .+.+++++|.++...|++++|+..|+++++++|++..   .+.++|.++.     
T Consensus        46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~---~~~~la~i~~~~~~~  122 (168)
T CHL00033         46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ---ALNNMAVICHYRGEQ  122 (168)
T ss_pred             HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHhhHH
Confidence            3456678888999999877655   3568999999999999999999999999999999998   8999999999     


Q ss_pred             --HcCCHHHHHHHHHHH
Q 027087          145 --EVGDREEAIAEMEDV  159 (228)
Q Consensus       145 --~~g~~~~A~~~~~~a  159 (228)
                        .+|++++|+..++++
T Consensus       123 ~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        123 AIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHcccHHHHHHHHHHH
Confidence              788877555554443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.75  E-value=4.8e-07  Score=74.04  Aligned_cols=131  Identities=16%  Similarity=0.132  Sum_probs=100.7

Q ss_pred             hhCCCchHHHHHHHHHHhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC--
Q 027087           73 ATYDPLTQAEKDASAAVSSRVS---DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG--  147 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~---~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g--  147 (228)
                      .+.+....|+..+..++...|.   -..+.+.+|.++++.|+|++|+..|++.++..|+++.+.++++.+|.+++.+.  
T Consensus        16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~   95 (203)
T PF13525_consen   16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG   95 (203)
T ss_dssp             HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence            4456678888888888876665   46789999999999999999999999999999999998899999999987754  


Q ss_pred             ---------CHHHHHHHHHHHHHhcCCCH---HHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          148 ---------DREEAIAEMEDVSISLKGYP---EVHA--------------ALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       148 ---------~~~~A~~~~~~al~~~~~~p---~~~~--------------~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                               ...+|+..|+..+...|+++   ++..              ..|..++. .|.+..|+..|+.+++-.|+.
T Consensus        96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t  174 (203)
T PF13525_consen   96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDT  174 (203)
T ss_dssp             HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCC
Confidence                     34589999999988888875   2222              22344444 579999999999999999987


Q ss_pred             Cch
Q 027087          202 TDL  204 (228)
Q Consensus       202 ~~~  204 (228)
                      ...
T Consensus       175 ~~~  177 (203)
T PF13525_consen  175 PAA  177 (203)
T ss_dssp             HHH
T ss_pred             chH
Confidence            653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.74  E-value=2.8e-07  Score=73.25  Aligned_cols=75  Identities=19%  Similarity=0.194  Sum_probs=66.2

Q ss_pred             HhhCCCchHHHHHHHHHHhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087           72 AATYDPLTQAEKDASAAVSSRVS---DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD  148 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~---~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~  148 (228)
                      ....+..+.|...+..+++.+++   .+.+++++|.++.+.|++++|+..|+++++.+|++..   ++.++|.++...|+
T Consensus        45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~  121 (172)
T PRK02603         45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS---ALNNIAVIYHKRGE  121 (172)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHcCC
Confidence            44567788899999999977665   3578999999999999999999999999999999998   89999999999888


Q ss_pred             H
Q 027087          149 R  149 (228)
Q Consensus       149 ~  149 (228)
                      .
T Consensus       122 ~  122 (172)
T PRK02603        122 K  122 (172)
T ss_pred             h
Confidence            4

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.73  E-value=2.4e-07  Score=88.07  Aligned_cols=107  Identities=20%  Similarity=0.086  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      ...++..++.++..|++++|+..+.++|+.+|.++.   +|+.+|.+|.++|+.+++....-.|.-..|.+.+.|..++.
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad  215 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD  215 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            455788889999999999999999999999999999   99999999999999999999999987788889999999998


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          176 ALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ...+ .|.+++|+-+|.+||+.+|.+.+..|
T Consensus       216 ls~~-~~~i~qA~~cy~rAI~~~p~n~~~~~  245 (895)
T KOG2076|consen  216 LSEQ-LGNINQARYCYSRAIQANPSNWELIY  245 (895)
T ss_pred             HHHh-cccHHHHHHHHHHHHhcCCcchHHHH
Confidence            6666 56899999999999999999977665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1.4e-07  Score=83.16  Aligned_cols=101  Identities=12%  Similarity=0.000  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAA  176 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~  176 (228)
                      ..+.|++.++.++++|.+|+...+++|+++|+|..   |+|.+|.++..+|+|+.|+..|++++...|.|-.+...+..+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K---ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK---ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35799999999999999999999999999999999   999999999999999999999999999999998888888877


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          177 LYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       177 l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      -.......+...+.|.+++..-+.
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccc
Confidence            666555556668899999887553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.71  E-value=3.9e-07  Score=81.85  Aligned_cols=113  Identities=16%  Similarity=0.089  Sum_probs=104.2

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      ..+|....++|..+..++..|++++|+..++..+...|+|+-   .+-..+.++.+.|+.++|++.+++++.+.|..+-.
T Consensus       300 ~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~---~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         300 RSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY---YLELAGDILLEANKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             HhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence            334778889999999999999999999999999999999997   78999999999999999999999999988888889


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..++|.++.. +|++.+|+..+.+.+.-+|+++..+.
T Consensus       377 ~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~  412 (484)
T COG4783         377 QLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWD  412 (484)
T ss_pred             HHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHH
Confidence            9999999998 67899999999999999999998643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.71  E-value=4.2e-07  Score=83.69  Aligned_cols=127  Identities=17%  Similarity=0.051  Sum_probs=105.9

Q ss_pred             HhhCCCchHHHHHHHHHH--------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAV--------SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVG  138 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al--------~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~  138 (228)
                      ....+...+|+..+..++        ..+|.-+.++.|++.+|...|+|++|..++++|+++.     .+.++++-.+.+
T Consensus       251 y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~  330 (508)
T KOG1840|consen  251 YRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE  330 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence            445677888888888777        5577778899999999999999999999999999875     334555557899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCC-----C---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          139 RALALYEVGDREEAIAEMEDVSISLKG-----Y---PEVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       139 la~~~~~~g~~~~A~~~~~~al~~~~~-----~---p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      ++.++..++++++|+..+++++.++..     +   +....++|.+++.+ |+|++|++.|++++.+.-
T Consensus       331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~-gk~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM-GKYKEAEELYKKAIQILR  398 (508)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHH
Confidence            999999999999999999999887652     2   25677899988885 589999999999999863

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=7.2e-07  Score=74.43  Aligned_cols=128  Identities=18%  Similarity=0.115  Sum_probs=112.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +...+..+.|...+...-..-|++..+.-..|..+...|.+++|++.|+..++-||.+.-   .+-..-.+.-.+|+.-+
T Consensus        62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v---~~KRKlAilka~GK~l~  138 (289)
T KOG3060|consen   62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV---IRKRKLAILKAQGKNLE  138 (289)
T ss_pred             HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH---HHHHHHHHHHHcCCcHH
Confidence            445566666766666666667999999999999999999999999999999999999987   67777777778899999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ||+.+.+-+.....|+++|..++.+|+.. |+|++|.-+|++++-++|.+..
T Consensus       139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-~~f~kA~fClEE~ll~~P~n~l  189 (289)
T KOG3060|consen  139 AIKELNEYLDKFMNDQEAWHELAEIYLSE-GDFEKAAFCLEELLLIQPFNPL  189 (289)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHcCCCcHH
Confidence            99999999999999999999999999996 4999999999999999998764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.2e-07  Score=83.59  Aligned_cols=98  Identities=15%  Similarity=0.082  Sum_probs=81.5

Q ss_pred             chHHHHHHHHHHhcChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDA----LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a----~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ...+...+..+|.+||++.    ..|.|++.+..++|+..+||...+.++++||.+..   ++..+|.++..++++++|+
T Consensus       265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik---all~ra~c~l~le~~e~AV  341 (486)
T KOG0550|consen  265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK---ALLRRANCHLALEKWEEAV  341 (486)
T ss_pred             hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            3445555667889999984    56899999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      ++|++++.. ..+++.+..+..+-..
T Consensus       342 ~d~~~a~q~-~~s~e~r~~l~~A~~a  366 (486)
T KOG0550|consen  342 EDYEKAMQL-EKDCEIRRTLREAQLA  366 (486)
T ss_pred             HHHHHHHhh-ccccchHHHHHHHHHH
Confidence            999999443 3346666666655444

>TIGR00540 hemY_coli hemY protein

Probab=98.71  E-value=9.1e-07  Score=79.83  Aligned_cols=126  Identities=14%  Similarity=0.041  Sum_probs=109.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~  150 (228)
                      +..-+....|.....++.+..|+....+...|.+..++|++++|...|+++.+..|++. .   +....+.++...|+++
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~---~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL---VEIARTRILLAQNELH  170 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH---HHHHHHHHHHHCCCHH
Confidence            44557777888888888888888888888889999999999999999999999999985 4   5666799999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      +|...+++++...|+++.++..++.++.. .|++++|++.+.+.++.....
T Consensus       171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-~~d~~~a~~~l~~l~k~~~~~  220 (409)
T TIGR00540       171 AARHGVDKLLEMAPRHKEVLKLAEEAYIR-SGAWQALDDIIDNMAKAGLFD  220 (409)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999998888 458999999999999875443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=98.70  E-value=4.1e-07  Score=82.12  Aligned_cols=117  Identities=14%  Similarity=0.070  Sum_probs=96.1

Q ss_pred             HHHHhcCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087           86 SAAVSSRV----SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus        86 ~~al~~~p----~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      ...++..|    ++...++.+|..+...|++++|++.++++++..|++....+ ..-........++.+++++.+++.+.
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            33455566    58899999999999999999999999999999999885111 13344455556889999999999999


Q ss_pred             hcCCCH--HHHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCch
Q 027087          162 SLKGYP--EVHAALAAALYVDKHALLLAENQFT--IATLLDPHYTDL  204 (228)
Q Consensus       162 ~~~~~p--~~~~~la~~l~~~~~~~~~A~~~~~--~al~l~P~~~~~  204 (228)
                      ..|.+|  ..+..+|.+++. .|++++|+++|+  .+++.+|+....
T Consensus       328 ~~p~~~~~~ll~sLg~l~~~-~~~~~~A~~~le~a~a~~~~p~~~~~  373 (409)
T TIGR00540       328 NVDDKPKCCINRALGQLLMK-HGEFIEAADAFKNVAACKEQLDANDL  373 (409)
T ss_pred             hCCCChhHHHHHHHHHHHHH-cccHHHHHHHHHHhHHhhcCCCHHHH
Confidence            999999  888899999988 568999999999  688899987664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=3.8e-07  Score=83.16  Aligned_cols=118  Identities=20%  Similarity=0.187  Sum_probs=91.4

Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087           85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK  164 (228)
Q Consensus        85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~  164 (228)
                      .-+.++..|+.+..||..|.-|...|++.+|..+|.++..+||.+..   +|...|..+...|+-|+|+.+|..|.+..+
T Consensus       301 sh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~  377 (611)
T KOG1173|consen  301 SHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMP  377 (611)
T ss_pred             HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence            34556778888888888888888888888888888888888888888   888888888888888888888888866666


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          165 GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       165 ~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..-.....+|.-+.. .+.++-|.+.|.+|+.+.|.++-.+.
T Consensus       378 G~hlP~LYlgmey~~-t~n~kLAe~Ff~~A~ai~P~Dplv~~  418 (611)
T KOG1173|consen  378 GCHLPSLYLGMEYMR-TNNLKLAEKFFKQALAIAPSDPLVLH  418 (611)
T ss_pred             CCcchHHHHHHHHHH-hccHHHHHHHHHHHHhcCCCcchhhh
Confidence            655555666665544 35778888888888888888776544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.66  E-value=1.2e-06  Score=78.75  Aligned_cols=126  Identities=12%  Similarity=-0.031  Sum_probs=95.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALE-LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a-~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      +.+.+..+.+...+..+.+.+|++..+ ....+.++...|++++|++.++++++.+|+++.   ++..++.+|.+.|+++
T Consensus       128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~---al~ll~~~~~~~gdw~  204 (398)
T PRK10747        128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPE---VLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHhHH
Confidence            355666777777777788888887543 344588999999999999999999999999999   8999999999999999


Q ss_pred             HHHHHHHHHHHhc------------------------------------------CCCHHHHHHHHHHHHHhcCCHHHHH
Q 027087          151 EAIAEMEDVSISL------------------------------------------KGYPEVHAALAAALYVDKHALLLAE  188 (228)
Q Consensus       151 ~A~~~~~~al~~~------------------------------------------~~~p~~~~~la~~l~~~~~~~~~A~  188 (228)
                      +|++.+.++....                                          +++|+++..++..+.. .|+.++|.
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-~g~~~~A~  283 (398)
T PRK10747        205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-CDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-CCCHHHHH
Confidence            9996666664222                                          2344555566666666 45788888


Q ss_pred             HHHHHHHhcCCCC
Q 027087          189 NQFTIATLLDPHY  201 (228)
Q Consensus       189 ~~~~~al~l~P~~  201 (228)
                      +.++++++..|+.
T Consensus       284 ~~L~~~l~~~~~~  296 (398)
T PRK10747        284 QIILDGLKRQYDE  296 (398)
T ss_pred             HHHHHHHhcCCCH
Confidence            8888888855543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.63  E-value=6.8e-07  Score=68.75  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=83.2

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD  148 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~  148 (228)
                      +.+-...+.|+..+..+....|..   ..+.+.+|.++++.|++++|+..+++-++++|+++.+.|+++.+|++++.+.+
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence            445566777887777777665543   57889999999999999999999999999999999999999999999999987


Q ss_pred             ---------------HHHHHHHHHHHHHhcCCCH
Q 027087          149 ---------------REEAIAEMEDVSISLKGYP  167 (228)
Q Consensus       149 ---------------~~~A~~~~~~al~~~~~~p  167 (228)
                                     ..+|...|++++...|+++
T Consensus       100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence                           8899999999977777765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=2.7e-07  Score=79.56  Aligned_cols=120  Identities=18%  Similarity=0.083  Sum_probs=84.7

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      |....++..+...++.-|.+.-.+...+.++..++++++|++.|+.+++++|.+.+   +...+|.-|+-.|+.+-|+..
T Consensus       270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE---aiAcia~~yfY~~~PE~Alry  346 (478)
T KOG1129|consen  270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE---AIACIAVGYFYDNNPEMALRY  346 (478)
T ss_pred             ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce---eeeeeeeccccCCChHHHHHH
Confidence            33344444444444666777667777788889999999999999999999999888   666666667777777777777


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      |++++..--.+|+...++|.|++. ++++|-+...|+++++...
T Consensus       347 YRRiLqmG~~speLf~NigLCC~y-aqQ~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  347 YRRILQMGAQSPELFCNIGLCCLY-AQQIDLVLPSFQRALSTAT  389 (478)
T ss_pred             HHHHHHhcCCChHHHhhHHHHHHh-hcchhhhHHHHHHHHhhcc
Confidence            777766656667777777766655 4466777777777766654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.62  E-value=1.8e-06  Score=80.19  Aligned_cols=127  Identities=20%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--
Q 027087           96 ALELLEKGRELQAIGD---FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG--------DREEAIAEMEDVSIS--  162 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~---~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g--------~~~~A~~~~~~al~~--  162 (228)
                      +-.+|.+|.-+...++   +++|+.+|++|++++|++..   ++..++.++....        +.+++....++++..  
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~  415 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE  415 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence            3345788888877655   88999999999999999998   8888888876642        234556666665332  


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh----cCCCChhHHHHHHHhhcc
Q 027087          163 LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD----TKHWPPSLVSSLRHFITL  227 (228)
Q Consensus       163 ~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  227 (228)
                      .+.+|.++..++..... .|++++|..+|+++++++|+ ...+...+    ..--.+.-++.+.+++++
T Consensus       416 ~~~~~~~~~ala~~~~~-~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        416 LNVLPRIYEILAVQALV-KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             CcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            55567888888887766 56999999999999999995 55555433    112334456666666655

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.62  E-value=1.9e-07  Score=63.21  Aligned_cols=69  Identities=20%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          140 ALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       140 a~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      ..+|...+++++|++.+++++...|.++..+..+|.+++.+ |++++|.+.|+++++.+|+.........
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            56889999999999999999999999999999999999995 5999999999999999998887765543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.62  E-value=3.9e-07  Score=72.51  Aligned_cols=86  Identities=19%  Similarity=0.027  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-
Q 027087           80 QAEKDASAAVSSRVSDALELLEKGRELQAIG----------DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD-  148 (228)
Q Consensus        80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g----------~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~-  148 (228)
                      .+...+...+..||.|++.+++.|.++..+.          -+++|+.-|++|+.++|+..+   +++++|++|...+. 
T Consensus         9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---Alw~lGnA~ts~A~l   85 (186)
T PF06552_consen    9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---ALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---HHHHHHHHHHHHHhh
Confidence            4555667778899999999999999997653          356789999999999999999   99999999987654 


Q ss_pred             ----------HHHHHHHHHHHHHhcCCCHH
Q 027087          149 ----------REEAIAEMEDVSISLKGYPE  168 (228)
Q Consensus       149 ----------~~~A~~~~~~al~~~~~~p~  168 (228)
                                |++|..+|++++...|.+..
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                      55666777777666666553

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=5.5e-07  Score=76.75  Aligned_cols=95  Identities=17%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCHHHH
Q 027087          110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK--HALLLA  187 (228)
Q Consensus       110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~--~~~~~A  187 (228)
                      .+.++-+.-++.-+..||+|.+   .|..+|.+|..+|+++.|...|++++++.+++|+....++.+++.+.  ....++
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~e---gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a  212 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAE---GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA  212 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence            3466777888889999999999   99999999999999999999999999999999999999999888864  456889


Q ss_pred             HHHHHHHHhcCCCCCchhhh
Q 027087          188 ENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       188 ~~~~~~al~l~P~~~~~~~~  207 (228)
                      ...|++++.+||.+..+.+.
T Consensus       213 ~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         213 RALLRQALALDPANIRALSL  232 (287)
T ss_pred             HHHHHHHHhcCCccHHHHHH
Confidence            99999999999999998764

>PRK15331 chaperone protein SicA; Provisional

Probab=98.60  E-value=6.8e-07  Score=70.29  Aligned_cols=87  Identities=13%  Similarity=-0.069  Sum_probs=81.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      .-+.+..++|..+++-+...||.+.+-++.+|.++..+|+|++|+..|..+..++++++.   ..+..|.|+..+|+.++
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~---p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR---PVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---ccchHHHHHHHhCCHHH
Confidence            345677889999999888999999999999999999999999999999999999999999   89999999999999999


Q ss_pred             HHHHHHHHHH
Q 027087          152 AIAEMEDVSI  161 (228)
Q Consensus       152 A~~~~~~al~  161 (228)
                      |+.+|+.++.
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999999944

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=8.5e-07  Score=79.42  Aligned_cols=122  Identities=18%  Similarity=0.080  Sum_probs=101.1

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.+..++..++..|..-.+++||+|..+..+|+.++|+++|-+.-.+--++.+   .++.++.+|..+.+..+|+++
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e---vl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE---VLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHhhCHHHHHHH
Confidence            44677888899999999999999999999999999999999999999888889999   899999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      |.++...+|++|.++.-|+.+|-+ .|+-.+|-+++-...+.-|-+
T Consensus       581 ~~q~~slip~dp~ilskl~dlydq-egdksqafq~~ydsyryfp~n  625 (840)
T KOG2003|consen  581 LMQANSLIPNDPAILSKLADLYDQ-EGDKSQAFQCHYDSYRYFPCN  625 (840)
T ss_pred             HHHhcccCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhcccccCcc
Confidence            999999999999888888875444 334455555444444444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.59  E-value=9.2e-07  Score=79.59  Aligned_cols=107  Identities=12%  Similarity=-0.021  Sum_probs=91.0

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      +..|+++.+++.++..+...|+.++|...++++++..| ++.   ....++.+  ..|+.+++++.+++.+...|+||+.
T Consensus       257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~---l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l  330 (398)
T PRK10747        257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER---LVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLL  330 (398)
T ss_pred             HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH---HHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHH
Confidence            34566889999999999999999999999999999544 444   34444443  4599999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +..+|.++.. .+++++|+++|+++++++|++..
T Consensus       331 ~l~lgrl~~~-~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        331 WSTLGQLLMK-HGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCHHH
Confidence            9999998888 56899999999999999999877

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=3.1e-07  Score=81.24  Aligned_cols=123  Identities=16%  Similarity=0.049  Sum_probs=107.9

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ..-|..+..++|+.+|.+..++...|.++...|+.++|+-.|+.|+.+.|...+   .|-.+-.+|...|++.||....+
T Consensus       316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---~Y~GL~hsYLA~~~~kEA~~~An  392 (564)
T KOG1174|consen  316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---IYRGLFHSYLAQKRFKEANALAN  392 (564)
T ss_pred             HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH---HHHHHHHHHHhhchHHHHHHHHH
Confidence            455666777888999999999999999999999999999999999999999998   88999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHH-HHHHHh-cCCHHHHHHHHHHHHhcCCCCCch
Q 027087          158 DVSISLKGYPEVHAALA-AALYVD-KHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la-~~l~~~-~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .++...+.+...+..+| .+++.. .++ ++|.+.+++.|.++|.|..+
T Consensus       393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~r-EKAKkf~ek~L~~~P~Y~~A  440 (564)
T KOG1174|consen  393 WTIRLFQNSARSLTLFGTLVLFPDPRMR-EKAKKFAEKSLKINPIYTPA  440 (564)
T ss_pred             HHHHHhhcchhhhhhhcceeeccCchhH-HHHHHHHHhhhccCCccHHH
Confidence            99888888888887776 344332 245 99999999999999999875

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=3.4e-07  Score=85.59  Aligned_cols=122  Identities=12%  Similarity=0.018  Sum_probs=96.2

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ...+...+.+.++++|-....||++|.+..+.++++.|..+|.+.+.++|++..   +|+|++.+|...|+-.+|-..+.
T Consensus       501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e---aWnNls~ayi~~~~k~ra~~~l~  577 (777)
T KOG1128|consen  501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE---AWNNLSTAYIRLKKKKRAFRKLK  577 (777)
T ss_pred             HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh---hhhhhhHHHHHHhhhHHHHHHHH
Confidence            345556667778888888888888888888888888888888888888888888   88888888888888888888888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +++.-.-.+..++.|.-.+.... |.+++|++.|.+.+.+.-++.+
T Consensus       578 EAlKcn~~~w~iWENymlvsvdv-ge~eda~~A~~rll~~~~~~~d  622 (777)
T KOG1128|consen  578 EALKCNYQHWQIWENYMLVSVDV-GEFEDAIKAYHRLLDLRKKYKD  622 (777)
T ss_pred             HHhhcCCCCCeeeechhhhhhhc-ccHHHHHHHHHHHHHhhhhccc
Confidence            88554434457777766666664 5788888888888887666554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.56  E-value=5.6e-07  Score=86.30  Aligned_cols=108  Identities=23%  Similarity=0.205  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF-AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~-~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      ++.+|++|.+++.+|+|++|-.+|.+++..+|++ ..   +++.+|.++...|++++++.+|++++...|.+.+....||
T Consensus       307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG  383 (1018)
T KOG2002|consen  307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG  383 (1018)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            4557889999999999999999999999999998 55   8899999999999999999999999998999999888888


Q ss_pred             HHHHHhc---CCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          175 AALYVDK---HALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       175 ~~l~~~~---~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..+...+   ...+.|.....++++..|.+.+++.
T Consensus       384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l  418 (1018)
T KOG2002|consen  384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL  418 (1018)
T ss_pred             hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence            8766642   2458999999999999998888644

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.54  E-value=1.3e-06  Score=84.88  Aligned_cols=117  Identities=12%  Similarity=0.039  Sum_probs=87.7

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-------------------hhHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-------------------FSEY  134 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-------------------~~~~  134 (228)
                      ..+..+.+...+...++.+|+....++.+|.++.+.+++.++.-.  +++.+-+.+.                   .   
T Consensus        43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~---  117 (906)
T PRK14720         43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKL---  117 (906)
T ss_pred             hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhH---
Confidence            456677777777777888888888888888887777777777655  6666655555                   5   


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      |++.+|.||-++|+.++|...|++++...+.|+.+.+++|..+..+  +.++|++.+.+|+..
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~  178 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence            7888888888888888888888888888888888888887766664  667777777777665

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=1.9e-06  Score=69.77  Aligned_cols=106  Identities=20%  Similarity=0.156  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS--EYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      -+-.-|+-++..|+|++|...|..||++-|.-..-  ...+.|+|.++.+++..+.|+..+.+++.+.|.+-.++..++.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            34555999999999999999999999999986531  1247899999999999999999999998888888788887788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          176 ALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +|-.+ ..|++|++.|++.++++|...++
T Consensus       177 ayek~-ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  177 AYEKM-EKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HHHhh-hhHHHHHHHHHHHHHhCcchHHH
Confidence            77775 68999999999999999987754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2.8e-06  Score=75.30  Aligned_cols=127  Identities=16%  Similarity=-0.013  Sum_probs=97.1

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCH------------------------------------HHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDF------------------------------------NKAL  116 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~------------------------------------~~Ai  116 (228)
                      .+....++|+-.++.+..+.|.+-+.|-.+-.+|...|++                                    ++|.
T Consensus       345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK  424 (564)
T KOG1174|consen  345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK  424 (564)
T ss_pred             HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence            3445566666666767666666665555544444333333                                    4677


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087          117 QYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATL  196 (228)
Q Consensus       117 ~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~  196 (228)
                      +.+++++.++|++..   |-..++..+...|+++++++.+++.+...+ |-..|.-||.++... +.+++|.++|..||+
T Consensus       425 kf~ek~L~~~P~Y~~---AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~-Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  425 KFAEKSLKINPIYTP---AVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQ-NEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHhhhccCCccHH---HHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHh-hhHHHHHHHHHHHHh
Confidence            788888889999998   999999999999999999999999944333 335788899988884 589999999999999


Q ss_pred             cCCCCCch
Q 027087          197 LDPHYTDL  204 (228)
Q Consensus       197 l~P~~~~~  204 (228)
                      +||++..+
T Consensus       500 ~dP~~~~s  507 (564)
T KOG1174|consen  500 QDPKSKRT  507 (564)
T ss_pred             cCccchHH
Confidence            99998875

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.50  E-value=1.2e-06  Score=80.78  Aligned_cols=107  Identities=17%  Similarity=0.052  Sum_probs=90.8

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN--------YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--------~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      ..+|.-..+..++|..|..+|+|++|+..+++++++        .|.-..   ...++|.+|..++++++|+..|++++.
T Consensus       193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~---~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS---MLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            445666667778999999999999999999999999        666555   667799999999999999999999977


Q ss_pred             hcC-----CCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          162 SLK-----GYP---EVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       162 ~~~-----~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ...     .+|   ..+.+|+.+|+. .|++++|..++++|+++.-+
T Consensus       270 i~e~~~G~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  270 IREEVFGEDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHH
Confidence            553     455   678889998988 56999999999999998654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.50  E-value=4.1e-06  Score=63.00  Aligned_cols=84  Identities=24%  Similarity=0.319  Sum_probs=73.9

Q ss_pred             hhCCCchHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHHc
Q 027087           73 ATYDPLTQAEKDASAAVSSRV---SDALELLEKGRELQAIGDFNKALQYFTLVVENYKD---FAFSEYARVGRALALYEV  146 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p---~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~---~~~~~~a~~~la~~~~~~  146 (228)
                      ...+..+.|+..++++++...   .-..+++++|..+...|++++|+..+++++...|+   +..   ....++.++...
T Consensus        12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~---l~~f~Al~L~~~   88 (120)
T PF12688_consen   12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA---LRVFLALALYNL   88 (120)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH---HHHHHHHHHHHC
Confidence            345678899999999997643   33678999999999999999999999999999898   666   788999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027087          147 GDREEAIAEMEDV  159 (228)
Q Consensus       147 g~~~~A~~~~~~a  159 (228)
                      |+.++|+..+-.+
T Consensus        89 gr~~eAl~~~l~~  101 (120)
T PF12688_consen   89 GRPKEALEWLLEA  101 (120)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999999888

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.49  E-value=3.5e-06  Score=71.04  Aligned_cols=94  Identities=22%  Similarity=0.256  Sum_probs=80.8

Q ss_pred             CCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      +....|...+...++.-|++   +.++|.+|.+++.+|+|++|...|..+++-.|+++.+..+++.+|.++.++|+.++|
T Consensus       155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A  234 (262)
T COG1729         155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA  234 (262)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence            33567777777778777775   688999999999999999999999999999999887666999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHH
Q 027087          153 IAEMEDVSISLKGYPEV  169 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~  169 (228)
                      ...|++++...|..+.+
T Consensus       235 ~atl~qv~k~YP~t~aA  251 (262)
T COG1729         235 CATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHHHHHHCCCCHHH
Confidence            99999996666655433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.48  E-value=4.8e-06  Score=71.74  Aligned_cols=124  Identities=17%  Similarity=0.030  Sum_probs=94.8

Q ss_pred             CCchHHHHHHHHHHhcChhh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           76 DPLTQAEKDASAAVSSRVSD-----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      ..+..|+..+.+...+++++     +.-|..++..+....+++.|+..+.+|++.+|+...   |-..+|.++...|+|+
T Consensus       155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---Asi~lG~v~~~~g~y~  231 (389)
T COG2956         155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---ASIILGRVELAKGDYQ  231 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---hhhhhhHHHHhccchH
Confidence            33555555555555555443     445678888888889999999999999999999988   8889999999999999


Q ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          151 EAIAEMEDVSISLKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +|++.++.++..++.+ +++...|..+|..+ |+.++.+..+.++.+.++....
T Consensus       232 ~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l-g~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         232 KAVEALERVLEQNPEYLSEVLEMLYECYAQL-GKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHccCCccH
Confidence            9999999996665555 36777777777774 5778888888888888776554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=7.5e-07  Score=73.74  Aligned_cols=95  Identities=16%  Similarity=0.066  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY  178 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~  178 (228)
                      +-..|+.++.-++|+.||.+|.++|.++|..+.   -+-|++.+++++++++......++++..+++....++.+|..+.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~---Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS---YYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcch---hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            455677788888888888888888888888877   48888888888888888888888887777777788888888877


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 027087          179 VDKHALLLAENQFTIATLL  197 (228)
Q Consensus       179 ~~~~~~~~A~~~~~~al~l  197 (228)
                      .. +.|++|+..+.++.++
T Consensus        90 ~s-~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   90 QS-KGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hh-ccccHHHHHHHHHHHH
Confidence            74 4678888888888554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.48  E-value=3.4e-07  Score=56.32  Aligned_cols=42  Identities=17%  Similarity=0.056  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL  141 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~  141 (228)
                      .+++.+|.++..+|++++|++.|+++++.+|+++.   ++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~---a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE---AWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH---HHHHhhh
Confidence            56788888888889999999999999988898888   8887764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.46  E-value=1.5e-07  Score=54.71  Aligned_cols=34  Identities=32%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087          118 YFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus       118 ~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      +|+++|+++|+++.   +|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~---a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAE---AYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHH---HHHHHHHHHHHCcCHHhhcC
Confidence            37888888898888   88899998888888888863

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=1.4e-06  Score=71.33  Aligned_cols=84  Identities=25%  Similarity=0.268  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus        81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      |...+..++.++|+-+++++-+|.-+...|+|+.|.+.|+..+++||.+.-   ++.|+|+.++--||++-|...+.+--
T Consensus        84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y---a~lNRgi~~YY~gR~~LAq~d~~~fY  160 (297)
T COG4785          84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AHLNRGIALYYGGRYKLAQDDLLAFY  160 (297)
T ss_pred             HhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH---HHhccceeeeecCchHhhHHHHHHHH
Confidence            333445567999999999999999999999999999999999999999986   99999999999999999999999997


Q ss_pred             HhcCCCH
Q 027087          161 ISLKGYP  167 (228)
Q Consensus       161 ~~~~~~p  167 (228)
                      ..+|+||
T Consensus       161 Q~D~~DP  167 (297)
T COG4785         161 QDDPNDP  167 (297)
T ss_pred             hcCCCCh
Confidence            7788888

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.45  E-value=1.6e-06  Score=68.98  Aligned_cols=91  Identities=19%  Similarity=0.028  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087          112 FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR----------EEAIAEMEDVSISLKGYPEVHAALAAALYVDK  181 (228)
Q Consensus       112 ~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~  181 (228)
                      |+.|.+.++.....+|.+.+   ++++-|.++.++.++          ++|+.-|+++|.+.|...++++.+|.++..++
T Consensus         7 FE~ark~aea~y~~nP~Dad---nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDAD---NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHH---HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            78899999999999999999   999999998886444          57888888898889999999999999887764


Q ss_pred             ----------CCHHHHHHHHHHHHhcCCCCCchh
Q 027087          182 ----------HALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       182 ----------~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                                ..|++|..+|++|...+|++...+
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~  117 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYR  117 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence                      348899999999999999987643

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.44  E-value=4.5e-07  Score=62.33  Aligned_cols=63  Identities=19%  Similarity=0.053  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKG----YP---EVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      ++.++|.+|..+|++++|+..|++++.....    ++   ..+.++|.++.. .|++++|+++|++++++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence            7899999999999999999999999765321    12   567788998888 468999999999999863

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.43  E-value=3.2e-06  Score=73.06  Aligned_cols=130  Identities=17%  Similarity=0.118  Sum_probs=92.8

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG--DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR  149 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g--~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~  149 (228)
                      .+..+..+.|...+...-+.+.++.......+.+....|  ++.+|.-.|+...+..+..+.   .++.++.++..+|+|
T Consensus       141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~---~lng~A~~~l~~~~~  217 (290)
T PF04733_consen  141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK---LLNGLAVCHLQLGHY  217 (290)
T ss_dssp             HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH---HHHHHHHHHHHCT-H
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH---HHHHHHHHHHHhCCH
Confidence            456677777777776666666666555555555555555  588888888887666666666   788888999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ++|.+.+++++...+.+|+...++..+....|+..+.+.+.+.+....+|+++..
T Consensus       218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            9999999998777778888888888877776655467778888888888876654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.42  E-value=7.2e-07  Score=85.84  Aligned_cols=128  Identities=20%  Similarity=0.057  Sum_probs=110.2

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH------------------------
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE------------------------  133 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~------------------------  133 (228)
                      ...+...+.+++++|+.-+.++..+|.+|..--|...|..+|++|.++|+.+..++                        
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~  553 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA  553 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence            44555666777899999999999999999988899999999999999999876622                        


Q ss_pred             ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          134 ---------YARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       134 ---------~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                               ..|..+|..|.+.++..+|+..|+.+++..|.|-+.|..+|.+|.. .|+|..|.+.|.++..++|.+.-.
T Consensus       554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~  632 (1238)
T KOG1127|consen  554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYG  632 (1238)
T ss_pred             hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHH
Confidence                     2255688888899999999999999988888888999999999988 568999999999999999987766


Q ss_pred             hh
Q 027087          205 SY  206 (228)
Q Consensus       205 ~~  206 (228)
                      +|
T Consensus       633 ~f  634 (1238)
T KOG1127|consen  633 RF  634 (1238)
T ss_pred             HH
Confidence            55

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.42  E-value=6.4e-07  Score=59.72  Aligned_cols=64  Identities=11%  Similarity=-0.003  Sum_probs=55.9

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL  141 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~  141 (228)
                      .+..+.|+..+.++++.+|++..+++.+|.++.+.|++++|+..+++++..+|+++.   .+..++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE---YQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH---HHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH---HHHHHhc
Confidence            455678999999999999999999999999999999999999999999999999876   5555543

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.40  E-value=1.8e-05  Score=66.29  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE---VHA  171 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~---~~~  171 (228)
                      .+..+|+-|....+.|+|++|+..|+++....|..+.+..+...++.++++.|++++|+..+++-++..|.+|+   +.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            45679999999999999999999999999999998766668999999999999999999999999999998884   344


Q ss_pred             HHHHHHHHhc-------CCHHHHHHHHHHHHhcCCCCC
Q 027087          172 ALAAALYVDK-------HALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       172 ~la~~l~~~~-------~~~~~A~~~~~~al~l~P~~~  202 (228)
                      ..|.+.+..-       ....+|...|+..+...|+..
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            4565555431       234677888889999999855

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.40  E-value=7.2e-06  Score=70.72  Aligned_cols=125  Identities=14%  Similarity=0.092  Sum_probs=103.2

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.+.....++++-||+...+-..+|.+....|+|++|++.++++++.||++..  -+.-.+-.+|.++|+.++.+..
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~--evl~~L~~~Y~~lg~~~~~~~f  271 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS--EVLEMLYECYAQLGKPAEGLNF  271 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHHhCCHHHHHHH
Confidence            33455566677888999999999999999999999999999999999999999854  2678889999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +.+... ....+++...++.......|. ++|.....+-|...|.....
T Consensus       272 L~~~~~-~~~g~~~~l~l~~lie~~~G~-~~Aq~~l~~Ql~r~Pt~~gf  318 (389)
T COG2956         272 LRRAME-TNTGADAELMLADLIELQEGI-DAAQAYLTRQLRRKPTMRGF  318 (389)
T ss_pred             HHHHHH-ccCCccHHHHHHHHHHHhhCh-HHHHHHHHHHHhhCCcHHHH
Confidence            999943 333456777777766665554 99999999999999975543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.40  E-value=3.1e-06  Score=82.41  Aligned_cols=109  Identities=10%  Similarity=-0.094  Sum_probs=97.8

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP--  167 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p--  167 (228)
                      ..+|.+..++..+...+...|++++|++..+.+++.+|+...   .++.+|.++++.++++++.-.  .++...+.+.  
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~---~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~   99 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS---ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW   99 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee---hHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence            668999999999999999999999999999999999999999   999999999999999888776  6656666665  


Q ss_pred             -----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          168 -----------------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       168 -----------------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                                       .+++.+|.||-.+ |+.++|...|+++|++||+++.+
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~-g~~~ka~~~yer~L~~D~~n~~a  152 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKL-NENKKLKGVWERLVKADRDNPEI  152 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCcccHHH
Confidence                             7888999988775 57899999999999999999985

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.39  E-value=6.7e-07  Score=51.58  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF  129 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~  129 (228)
                      +.+|+++|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=5.7e-06  Score=68.94  Aligned_cols=107  Identities=13%  Similarity=0.036  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCchhH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVEN--------YKDFAFSE-------YARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--------~P~~~~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      .++...|+-+++.|+|.+|+..|+.|+..        .|..++|.       =.+.|++.|+...|+|-++++...+++.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            45678899999999999999999998743        46665532       1368999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          162 SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       162 ~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ..|.+..+++..+.+....- +.++|.+.|..+|+++|....+
T Consensus       259 ~~~~nvKA~frRakAhaa~W-n~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVW-NEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcChhhHHH
Confidence            99999999999998887765 5699999999999999987654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.32  E-value=1.8e-06  Score=49.52  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF  129 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~  129 (228)
                      +++++.+|.++..+|++++|++.|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.30  E-value=1.2e-05  Score=61.12  Aligned_cols=91  Identities=21%  Similarity=0.111  Sum_probs=78.6

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ....+.++..+.+++..-|+.+.+|+|++.++.-+|+.++|++.+++++++.-+-. ..+-++..+|.+|..+|+.++|.
T Consensus        56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR  135 (175)
T KOG4555|consen   56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAAR  135 (175)
T ss_pred             ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence            35577888888899999999999999999999999999999999999999975543 33457899999999999999999


Q ss_pred             HHHHHHHHhcCC
Q 027087          154 AEMEDVSISLKG  165 (228)
Q Consensus       154 ~~~~~al~~~~~  165 (228)
                      ..|+.+.+.-..
T Consensus       136 ~DFe~AA~LGS~  147 (175)
T KOG4555|consen  136 ADFEAAAQLGSK  147 (175)
T ss_pred             HhHHHHHHhCCH
Confidence            999999444333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.29  E-value=2.4e-05  Score=70.27  Aligned_cols=110  Identities=10%  Similarity=-0.106  Sum_probs=97.1

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      ...+.++..+.+..+.+|+   +...++.++...++-.+|++.+.+++..+|.+..   .+...+..+...|+++.|++.
T Consensus       183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---LLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Confidence            4467777777877787765   5666888999999999999999999999999998   899999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFT  192 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~  192 (228)
                      .++++...|.+-+.|+.|+.+|.. .|++++|...+.
T Consensus       257 Ak~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALlaLN  292 (395)
T PF09295_consen  257 AKKAVELSPSEFETWYQLAECYIQ-LGDFENALLALN  292 (395)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHHHh
Confidence            999988888888999999999998 469999998555

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.28  E-value=4.2e-06  Score=78.45  Aligned_cols=103  Identities=14%  Similarity=-0.030  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      ++.+...+|......++|+++..+++..++++|-..+   .|+++|.+..+.++++.|.++|.+.+...|.+.+++++++
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls  560 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS  560 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence            3444455566667789999999999999999999999   9999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      .++...+ +..+|...++++++-+-++
T Consensus       561 ~ayi~~~-~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  561 TAYIRLK-KKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             HHHHHHh-hhHHHHHHHHHHhhcCCCC
Confidence            9999966 6699999999999998433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.27  E-value=4.6e-05  Score=58.77  Aligned_cols=97  Identities=25%  Similarity=0.208  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAA  172 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~  172 (228)
                      +...|.........++.+.+...+++.++-+|+..-...+.+.+|.+++..|++++|+..|+.++...+.+   +.+...
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            34455556666689999999999999999999985444488999999999999999999999996655333   256777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 027087          173 LAAALYVDKHALLLAENQFTI  193 (228)
Q Consensus       173 la~~l~~~~~~~~~A~~~~~~  193 (228)
                      ++.+++. .|++++|+..++.
T Consensus        91 LA~~~~~-~~~~d~Al~~L~~  110 (145)
T PF09976_consen   91 LARILLQ-QGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHH-cCCHHHHHHHHHh
Confidence            8998888 5699999998866

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.26  E-value=3.5e-05  Score=61.95  Aligned_cols=124  Identities=18%  Similarity=0.209  Sum_probs=93.0

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE-NYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ++||.. ........++..|... -.+.+|+.+.+.|++.+|...|++++. +.-+++.   .+..++.+.+..+++.+|
T Consensus        69 ~ldP~R-~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a---~lLglA~Aqfa~~~~A~a  143 (251)
T COG4700          69 KLDPER-HLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA---MLLGLAQAQFAIQEFAAA  143 (251)
T ss_pred             hcChhH-HHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH---HHHHHHHHHHhhccHHHH
Confidence            445533 2333344455555443 368899999999999999999999875 2344555   678888899999999999


Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          153 IAEMEDVSISLKG--YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       153 ~~~~~~al~~~~~--~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ...++++.+-.|.  .|+.+..++.++.. +|++.+|+..|+.+++-.|+..-
T Consensus       144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Aesafe~a~~~ypg~~a  195 (251)
T COG4700         144 QQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAESAFEVAISYYPGPQA  195 (251)
T ss_pred             HHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHHHHHHHHHHhCCCHHH
Confidence            9999999555543  35788888888888 66889999999999999987654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.24  E-value=1.4e-05  Score=74.23  Aligned_cols=120  Identities=9%  Similarity=-0.027  Sum_probs=102.3

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      ++..++|....+..++.|+.+...|..+|.++...++|++||.+|+.|+.++|+|.+   .+..++....++++++....
T Consensus        54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q---ilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ---ILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHhhhhHHH
Confidence            456777888888888999999999999999999999999999999999999999999   99999999999999999988


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      .-.+.+...+..-..|..++.+.... |++..|....+.-.+..
T Consensus       131 tr~~LLql~~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  131 TRNQLLQLRPSQRASWIGFAVAQHLL-GEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence            88888676776667788788777764 47888887776665554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.21  E-value=1.1e-05  Score=74.71  Aligned_cols=123  Identities=14%  Similarity=-0.016  Sum_probs=109.6

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ......++...++..|++.+.+-..|..+..+|+-++|....+.++..|+.+.-   -|.-+|+++....+|++|+++|+
T Consensus        23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v---CwHv~gl~~R~dK~Y~eaiKcy~   99 (700)
T KOG1156|consen   23 YKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV---CWHVLGLLQRSDKKYDEAIKCYR   99 (700)
T ss_pred             HHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch---hHHHHHHHHhhhhhHHHHHHHHH
Confidence            445566777888999999999999999999999999999999999999999888   89999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .|+...++|-..+.-++....+++ +++-......+.+++.|.....
T Consensus       100 nAl~~~~dN~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~~ra~  145 (700)
T KOG1156|consen  100 NALKIEKDNLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPSQRAS  145 (700)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhHHH
Confidence            998888888889988888777754 8899999999999999976543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=1.7e-05  Score=64.33  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=76.1

Q ss_pred             chHHHHHHHHHHhcChhh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           78 LTQAEKDASAAVSSRVSD-----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...|...|..++..-|.-     +..|.|+|.++.++++++.||....++|+++|.+..   |+..++.+|.++..|++|
T Consensus       111 yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k---Al~RRAeayek~ek~eea  187 (271)
T KOG4234|consen  111 YEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK---ALERRAEAYEKMEKYEEA  187 (271)
T ss_pred             HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH---HHHHHHHHHHhhhhHHHH
Confidence            445555566666655543     456889999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHH
Q 027087          153 IAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la  174 (228)
                      +..|.+++..+|..-++.....
T Consensus       188 leDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  188 LEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHHHHHhCcchHHHHHHHH
Confidence            9999999666665444444333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.14  E-value=7.5e-06  Score=50.21  Aligned_cols=41  Identities=27%  Similarity=0.183  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      +++.+|.+|..+|++++|++.|++++...|+|++++..++.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            78999999999999999999999999999999999888764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.14  E-value=2e-06  Score=49.97  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=30.8

Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQ  117 (228)
Q Consensus        85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~  117 (228)
                      +.++++++|+++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            578999999999999999999999999999973

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.14  E-value=4.1e-05  Score=65.75  Aligned_cols=125  Identities=20%  Similarity=0.186  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHH-----hcChhh-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHcCC
Q 027087           79 TQAEKDASAAV-----SSRVSD-ALELLEKGRELQAI-GDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEVGD  148 (228)
Q Consensus        79 ~~a~~~~~~al-----~~~p~~-a~a~~~lG~~~~~~-g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~g~  148 (228)
                      +.++..+..++     ..++.. +..+.++|.+|... |++++|++.|++|+++.-....   ....+.+.|.++.+.|+
T Consensus        91 ~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~  170 (282)
T PF14938_consen   91 DEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR  170 (282)
T ss_dssp             HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence            34444555544     223332 56678889999998 9999999999999988432221   11246789999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCH----HH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          149 REEAIAEMEDVSISLKGYP----EV---HAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       149 ~~~A~~~~~~al~~~~~~p----~~---~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      |++|++.|+++....-.++    .+   ....+.++.. .|++..|...|++....+|.+..+
T Consensus       171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~-~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA-MGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCc
Confidence            9999999999965432221    22   2233444444 468999999999999999988774

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.13  E-value=5e-05  Score=70.85  Aligned_cols=123  Identities=11%  Similarity=-0.090  Sum_probs=59.5

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+++..++..+++..|+....|+.+|.++.++++.+.|.+.|..-++.-|+...   .|..++.+-.+.|..-.|...
T Consensus       665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip---LWllLakleEk~~~~~rAR~i  741 (913)
T KOG0495|consen  665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP---LWLLLAKLEEKDGQLVRARSI  741 (913)
T ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch---HHHHHHHHHHHhcchhhHHHH
Confidence            33444444444455555555555555555555555555555555555555555544   455555555555555555555


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      ++++..++|.++..|...-.+-+. .|..+.|.....+||+--|+..
T Consensus       742 ldrarlkNPk~~~lwle~Ir~ElR-~gn~~~a~~lmakALQecp~sg  787 (913)
T KOG0495|consen  742 LDRARLKNPKNALLWLESIRMELR-AGNKEQAELLMAKALQECPSSG  787 (913)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccc
Confidence            555544444444433333333333 2344555555555555444443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.12  E-value=1.7e-05  Score=74.79  Aligned_cols=92  Identities=12%  Similarity=0.007  Sum_probs=83.7

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQ--YFTLVVENYKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~--~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      .......+|...+..++.+||++......+|.++.+.|+..-|..  .+..++++||.+++   +|+++|.++.++|+.+
T Consensus       695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e---aW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE---AWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHccchH
Confidence            344556777777888899999999999999999999999999988  99999999999999   9999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCH
Q 027087          151 EAIAEMEDVSISLKGYP  167 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p  167 (228)
                      +|..+|..++...+.+|
T Consensus       772 ~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  772 QAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHHHhhccCCC
Confidence            99999999988777776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.10  E-value=2.8e-05  Score=69.81  Aligned_cols=83  Identities=17%  Similarity=0.065  Sum_probs=76.8

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+....++.....++..+|.++..+...+..+...|+++.|+...++++.+.|++..   .|+.++.+|..+|++++|+
T Consensus       212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~---~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE---TWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH---HHHHHHHHHHhcCCHHHHH
Confidence            4466777888888899999999999999999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHH
Q 027087          154 AEMEDV  159 (228)
Q Consensus       154 ~~~~~a  159 (228)
                      ..++..
T Consensus       289 laLNs~  294 (395)
T PF09295_consen  289 LALNSC  294 (395)
T ss_pred             HHHhcC
Confidence            888865

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2.5e-05  Score=64.83  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=83.9

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      .+.++..+.+++.++|..+..+.|++.++.+.++++.....-.++++++|+...   +++.+|.++.+...|++|+..+.
T Consensus        26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk---~h~flg~~~l~s~~~~eaI~~Lq  102 (284)
T KOG4642|consen   26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK---AHYFLGQWLLQSKGYDEAIKVLQ  102 (284)
T ss_pred             hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH---HHHHHHHHHHhhccccHHHHHHH
Confidence            567777899999999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHhcCCCH-----HHHHHHHHH
Q 027087          158 DVSISLKGYP-----EVHAALAAA  176 (228)
Q Consensus       158 ~al~~~~~~p-----~~~~~la~~  176 (228)
                      ++.......+     +....|..+
T Consensus       103 ra~sl~r~~~~~~~~di~~~L~~a  126 (284)
T KOG4642|consen  103 RAYSLLREQPFTFGDDIPKALRDA  126 (284)
T ss_pred             HHHHHHhcCCCCCcchHHHHHHHH
Confidence            9955444332     455544443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.05  E-value=3.1e-05  Score=74.90  Aligned_cols=96  Identities=19%  Similarity=0.146  Sum_probs=80.9

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      .....++-.++.+++.||+|...|..+|.+|...|+|..|++.|++|..++|++.-   +.|..+.+...+|+|.+|+..
T Consensus       576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y---~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY---GRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH---HHHHHHHHHHHhhhHHHHHHH
Confidence            34566777788899999999999999999999999999999999999999999886   999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHH
Q 027087          156 MEDVSISLKGYPEVHAALA  174 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la  174 (228)
                      +..++..-....-....++
T Consensus       653 l~~ii~~~s~e~~~q~gLa  671 (1238)
T KOG1127|consen  653 LGLIIYAFSLERTGQNGLA  671 (1238)
T ss_pred             HHHHHHHHHHHHHhhhhHH
Confidence            9998555444333333333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.03  E-value=1.6e-05  Score=69.20  Aligned_cols=99  Identities=16%  Similarity=0.051  Sum_probs=90.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      .-+.+..++|+..|...+..+|.|+..+.|++.+|.++++|..|+...+.|+.++-.+..   ||..+|.+-..+|...+
T Consensus       107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K---AYSRR~~AR~~Lg~~~E  183 (536)
T KOG4648|consen  107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK---AYSRRMQARESLGNNME  183 (536)
T ss_pred             hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH---HHHHHHHHHHHHhhHHH
Confidence            345677899999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAAL  173 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~l  173 (228)
                      |.++++.+|++-|.+-+..-.+
T Consensus       184 AKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  184 AKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHhHHHHHhhCcccHHHHHHH
Confidence            9999999988888766554433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.01  E-value=6.6e-06  Score=74.06  Aligned_cols=101  Identities=17%  Similarity=0.147  Sum_probs=89.8

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+-.+.++..+..+++++|+.+..+-+++.++.+.++|-.|+..+.+|++++|.+..   +|+.+|.+....+++.+|
T Consensus        15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K---~Y~rrg~a~m~l~~~~~A   91 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK---AYVRRGTAVMALGEFKKA   91 (476)
T ss_pred             cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh---eeeeccHHHHhHHHHHHH
Confidence            34456788889999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHH
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAA  176 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~  176 (228)
                      ...|+......|++|.+...+..+
T Consensus        92 ~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   92 LLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHhhhcCcCcHHHHHHHHHH
Confidence            999999988888888776655544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=6.8e-05  Score=69.11  Aligned_cols=123  Identities=15%  Similarity=0.041  Sum_probs=98.5

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.++..+.+.+.+.|++..+....-.++.+.++|++|+...++-..+.-++.    -.+..+.|+|++|+.|+|+++
T Consensus        26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~----~~fEKAYc~Yrlnk~Dealk~  101 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS----FFFEKAYCEYRLNKLDEALKT  101 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch----hhHHHHHHHHHcccHHHHHHH
Confidence            4567788888899999999999999999999999999999944443222222222    136899999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++-.   .+.++......+.++|.+ ++|++|...|+..++-+-++.+...
T Consensus       102 ~~~~---~~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~  148 (652)
T KOG2376|consen  102 LKGL---DRLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEER  148 (652)
T ss_pred             Hhcc---cccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence            9966   777777888889999995 5999999999999888776666443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=2.7e-05  Score=67.27  Aligned_cols=108  Identities=17%  Similarity=0.073  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG--DREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      ++.+.......++.+.++++.|.+.++...+.+.|..-   ....-+++....|  ++.+|...|+++....+..+..++
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l---~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln  205 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSIL---TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLN  205 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHH---HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHH---HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHH
Confidence            55677777888999999999999999999888777655   5555666666666  589999999999555556678888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      .++.+... .|++++|++.++++++.+|+++++.
T Consensus       206 g~A~~~l~-~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  206 GLAVCHLQ-LGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             HHHHHHHH-CT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHHhccCCHHHH
Confidence            89998888 5699999999999999999988753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.00  E-value=8.5e-05  Score=69.39  Aligned_cols=108  Identities=13%  Similarity=0.039  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      ...+|+........+|+.++|+..++++++..|++..   .|+.+|.++.++++.+.|...|...++..|..+-.|..++
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K---l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa  726 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK---LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA  726 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH---HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence            3456677778888899999999999999999999999   8999999999999999999999999888888888888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .+--. .|..-.|+..++++.-.||++...+.
T Consensus       727 kleEk-~~~~~rAR~ildrarlkNPk~~~lwl  757 (913)
T KOG0495|consen  727 KLEEK-DGQLVRARSILDRARLKNPKNALLWL  757 (913)
T ss_pred             HHHHH-hcchhhHHHHHHHHHhcCCCcchhHH
Confidence            86555 45889999999999999999887544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.99  E-value=0.00071  Score=52.27  Aligned_cols=119  Identities=20%  Similarity=0.131  Sum_probs=63.9

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGR-ELQAIGDFNKALQYFTLVVENYK---DFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~-~~~~~g~~~~Ai~~~~~Al~l~P---~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ...+...+...+..++.+.......+. ++...|+++.|+..|++++..+|   ....   ....++..+...+++++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~  187 (291)
T COG0457         111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAE---ALLALGALLEALGRYEEAL  187 (291)
T ss_pred             HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHH---HHHHhhhHHHHhcCHHHHH
Confidence            444555555555544444333333334 56666666666666666655554   2222   3455555555566666666


Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          154 AEMEDVSISLKG-YPEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       154 ~~~~~al~~~~~-~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ..+.+++...+. .......++..+.. .+++++|...+..++...|.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         188 ELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHHHHHHHHHHhhCcc
Confidence            666666554444 34455555555554 23556666666666666655

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.98  E-value=0.0005  Score=57.76  Aligned_cols=130  Identities=18%  Similarity=0.146  Sum_probs=102.8

Q ss_pred             hhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC--
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG--  147 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g--  147 (228)
                      ++.+..+.|+..+.+.....|..   ..+...++-++++.|+|++|+...++-+.+.|+++.+.|+++.+|++++..=  
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            45566788888888887777765   4678999999999999999999999999999999999999999999987632  


Q ss_pred             ------CHHHHHHHHHHHHHhcCCCH---HHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          148 ------DREEAIAEMEDVSISLKGYP---EVHA--------------ALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       148 ------~~~~A~~~~~~al~~~~~~p---~~~~--------------~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                            -..+|+..++.++...|+.+   ++..              ..|..+.. .|.+..|+..++++++-.|+...
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k-r~~~~AA~nR~~~v~e~y~~t~~  202 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK-RGAYVAAINRFEEVLENYPDTSA  202 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHhccccccc
Confidence                  23488999999988888764   2211              12333444 57899999999999998776554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.98  E-value=0.00022  Score=61.27  Aligned_cols=127  Identities=17%  Similarity=0.064  Sum_probs=84.8

Q ss_pred             CCCchHHHHHHHHHH-----hcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--C-CchhHHHHHHHHHHHHH
Q 027087           75 YDPLTQAEKDASAAV-----SSRVSD-ALELLEKGRELQAIGDFNKALQYFTLVVENYK--D-FAFSEYARVGRALALYE  145 (228)
Q Consensus        75 ~~~~~~a~~~~~~al-----~~~p~~-a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P--~-~~~~~~a~~~la~~~~~  145 (228)
                      ....+.|...+.++.     ..++.+ +..+.+.+.++.+ +++++|+..|++|+++.-  + +..++..+.++|.+|..
T Consensus        48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~  126 (282)
T PF14938_consen   48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE  126 (282)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred             HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            345555655555554     223333 3445555665544 499999999999998742  2 23334478999999999


Q ss_pred             c-CCHHHHHHHHHHHHHhcCCC--H----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          146 V-GDREEAIAEMEDVSISLKGY--P----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       146 ~-g~~~~A~~~~~~al~~~~~~--p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      . |++++|++.|++++.....+  +    +....++.++.. .++|++|++.|+++....-+...
T Consensus       127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l~~y~~A~~~~e~~~~~~l~~~l  190 (282)
T PF14938_consen  127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-LGRYEEAIEIYEEVAKKCLENNL  190 (282)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTCCCHCT
T ss_pred             HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhcccc
Confidence            9 99999999999997654422  2    455667777777 56999999999999886544443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.93  E-value=0.00026  Score=65.79  Aligned_cols=127  Identities=17%  Similarity=0.033  Sum_probs=103.1

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|+.+...+|+.+|...+.|+..|.++.+.|++++|.+.++.|..+|+.+--   .-...+..+.+.|++++|
T Consensus       205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy---iNsK~aKy~LRa~~~e~A  281 (517)
T PF12569_consen  205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY---INSKCAKYLLRAGRIEEA  281 (517)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH---HHHHHHHHHHHCCCHHHH
Confidence            35677889999999999999999999999999999999999999999999999999876   666677788899999999


Q ss_pred             HHHHHHHHHhcCCCH--------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          153 IAEMEDVSISLKGYP--------EVHA--ALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       153 ~~~~~~al~~~~~~p--------~~~~--~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ++.+..-.+... +|        -.|+  .-|.++.. .|++..|...|..+.+..-++.+-
T Consensus       282 ~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r-~~~~~~ALk~~~~v~k~f~~~~~D  341 (517)
T PF12569_consen  282 EKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLR-QGDYGLALKRFHAVLKHFDDFEED  341 (517)
T ss_pred             HHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc
Confidence            999998833321 33        1233  34677777 468999999999998876655443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.92  E-value=2.5e-05  Score=44.69  Aligned_cols=34  Identities=29%  Similarity=0.497  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF  129 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~  129 (228)
                      +.+++.+|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3578899999999999999999999999998854

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.92  E-value=1.3e-05  Score=72.23  Aligned_cols=104  Identities=17%  Similarity=0.090  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY  178 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~  178 (228)
                      .-+.++.+...++|+.|+..|.+||+++|+.+.   .+-|++.++.+.+++..|+.++.+++...|....+++-.|.+..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~---~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAI---YFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCccee---eechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            345677788899999999999999999999998   68999999999999999999999996666655577777777666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          179 VDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       179 ~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      . ++++.+|...|+....+.|+...+..
T Consensus        84 ~-l~~~~~A~~~l~~~~~l~Pnd~~~~r  110 (476)
T KOG0376|consen   84 A-LGEFKKALLDLEKVKKLAPNDPDATR  110 (476)
T ss_pred             h-HHHHHHHHHHHHHhhhcCcCcHHHHH
Confidence            6 56999999999999999999988643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.86  E-value=0.0008  Score=54.29  Aligned_cols=137  Identities=21%  Similarity=0.145  Sum_probs=102.4

Q ss_pred             hhCCCchHHHHHHHHHHh-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHcCCH
Q 027087           73 ATYDPLTQAEKDASAAVS-SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF--AFSEYARVGRALALYEVGDR  149 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~-~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~--~~~~~a~~~la~~~~~~g~~  149 (228)
                      ..++...++...+..++. +-.+|+..+..++++....+++.+|...+++..+-+|..  ++   ....+|.+|..+|++
T Consensus       100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd---~~Ll~aR~laa~g~~  176 (251)
T COG4700         100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD---GHLLFARTLAAQGKY  176 (251)
T ss_pred             HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC---chHHHHHHHHhcCCc
Confidence            455666667666666663 455678889999999999999999999999999999875  44   688899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCCh
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPP  215 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~  215 (228)
                      ++|...|+.++. .-.++++...++..+..+| +.++|...+..+.+---+ ...+|.+..+.|-+
T Consensus       177 a~Aesafe~a~~-~ypg~~ar~~Y~e~La~qg-r~~ea~aq~~~v~d~~~r-~~~H~rkh~reW~~  239 (251)
T COG4700         177 ADAESAFEVAIS-YYPGPQARIYYAEMLAKQG-RLREANAQYVAVVDTAKR-SRPHYRKHHREWIK  239 (251)
T ss_pred             hhHHHHHHHHHH-hCCCHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHh-cchhHHHHHHHHHH
Confidence            999999999933 3345688888888888855 568887766655432111 12345566666765

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.82  E-value=0.0012  Score=50.98  Aligned_cols=121  Identities=29%  Similarity=0.223  Sum_probs=82.1

Q ss_pred             CCchHHHHHHHHHHh--cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHHHcCCHHHH
Q 027087           76 DPLTQAEKDASAAVS--SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL-ALYEVGDREEA  152 (228)
Q Consensus        76 ~~~~~a~~~~~~al~--~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~-~~~~~g~~~~A  152 (228)
                      .....+.......+.  ..+.....++..|......+++.+++..+.+++..++++..   .....+. ++...|++++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a  149 (291)
T COG0457          73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---AEALLALGALYELGDYEEA  149 (291)
T ss_pred             ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---HHHHHHHHHHHHcCCHHHH
Confidence            334455555555554  57777777888888888888888888888888887777655   5555556 78888888888


Q ss_pred             HHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          153 IAEMEDVSISLK---GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       153 ~~~~~~al~~~~---~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      +..+++++...+   .........+..+.. .+++++++..+.+++...+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         150 LELYEKALELDPELNELAEALLALGALLEA-LGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCcc
Confidence            888888855333   122444444444444 45778888888888888777

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.81  E-value=0.00033  Score=64.53  Aligned_cols=121  Identities=22%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHcCCHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-EYARVGRALALYEVGDREEAIAEM  156 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-~~a~~~la~~~~~~g~~~~A~~~~  156 (228)
                      .+.+........+.-|+.+.-++..|.++...|+.++|++.|++++.......+. +-.++.+|+++.-+++|++|...+
T Consensus       249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            4445555566668889999999999999999999999999999998655444331 124789999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHH-HHHHHHhcCCH-------HHHHHHHHHHHhcCC
Q 027087          157 EDVSISLKGYPEVHAAL-AAALYVDKHAL-------LLAENQFTIATLLDP  199 (228)
Q Consensus       157 ~~al~~~~~~p~~~~~l-a~~l~~~~~~~-------~~A~~~~~~al~l~P  199 (228)
                      .+.+....-....+.++ |.++.. .++.       ++|.+.|+++-.+-.
T Consensus       329 ~~L~~~s~WSka~Y~Y~~a~c~~~-l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  329 LRLLKESKWSKAFYAYLAAACLLM-LGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHh-hccchhhhhhHHHHHHHHHHHHHHHh
Confidence            99955433334444444 444544 5566       888888887766544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.00048  Score=55.67  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PEVHAALAA  175 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~~~~~la~  175 (228)
                      +-..++..+...|++++|+..++.++..-.|.-...-+-.+++.++.++|.+|+|++.++..   ...+  +-.....|.
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---~~~~w~~~~~elrGD  167 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI---KEESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---ccccHHHHHHHHhhh
Confidence            34667888899999999999999998755443322236788999999999999999999887   3332  234556788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          176 ALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      ++... |+.++|+..|+++++.++......
T Consensus       168 ill~k-g~k~~Ar~ay~kAl~~~~s~~~~~  196 (207)
T COG2976         168 ILLAK-GDKQEARAAYEKALESDASPAARE  196 (207)
T ss_pred             HHHHc-CchHHHHHHHHHHHHccCChHHHH
Confidence            88885 577999999999999986554433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.76  E-value=0.00047  Score=64.13  Aligned_cols=98  Identities=20%  Similarity=0.192  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAA  176 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~  176 (228)
                      .+++.++..|...|++++|+...+++|+..|..++   .++..|.++-..|++++|.+.++.+..++..|- ..+....-
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-yiNsK~aK  270 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---LYMTKARILKHAGDLKEAAEAMDEARELDLADR-YINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH-HHHHHHHH
Confidence            35688899999999999999999999999999999   899999999999999999999999933333332 23333333


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC
Q 027087          177 LYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       177 l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      +.-..|++++|++.+..-.+-+
T Consensus       271 y~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  271 YLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhcCCC
Confidence            4444689999999877665544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.75  E-value=2.1e-05  Score=68.29  Aligned_cols=99  Identities=17%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Q 027087          107 QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLL  186 (228)
Q Consensus       107 ~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~  186 (228)
                      ...|+++.||+.|.+++.++|....   .+.+++.++.++++...|+..+..++...+.....+-..+.+... .|++++
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~---l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~  200 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAI---LYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEE  200 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhh---hcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHH
Confidence            3445555555555555555555555   555555555555555555555555533322222222223333323 234555


Q ss_pred             HHHHHHHHHhcCCCCCchhhhhh
Q 027087          187 AENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       187 A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      |...++.+++++-+-....|.++
T Consensus       201 aa~dl~~a~kld~dE~~~a~lKe  223 (377)
T KOG1308|consen  201 AAHDLALACKLDYDEANSATLKE  223 (377)
T ss_pred             HHHHHHHHHhccccHHHHHHHHH
Confidence            55555555555554444444443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00031  Score=60.96  Aligned_cols=112  Identities=14%  Similarity=0.006  Sum_probs=88.1

Q ss_pred             hcChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087           90 SSRVS-DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE-YARVGRALALYEVGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus        90 ~~~p~-~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      +.+|+ .+.-+-.-|+-|++.++|..|+..|.+.|...-.+++.- -.|.|++-+.+..|+|..|+....+++...|.+.
T Consensus        74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            34444 355666779999999999999999999999876665421 1368999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          168 EVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      .+++.=+.|++.+ .++++|..+.+..+.++-+..
T Consensus       154 Ka~~R~Akc~~eL-e~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  154 KAYIRGAKCLLEL-ERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             hhhhhhhHHHHHH-HHHHHHHHHHhhhhhhhHHHH
Confidence            8888778888885 477777777777666654433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.72  E-value=7.7e-05  Score=42.70  Aligned_cols=31  Identities=23%  Similarity=0.166  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKG  165 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~  165 (228)
                      +|+++|.++..+|++++|+..|++++...|.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            5677777777777777777777777555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.0014  Score=60.71  Aligned_cols=128  Identities=17%  Similarity=0.091  Sum_probs=92.7

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh--------------------
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS--------------------  132 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~--------------------  132 (228)
                      .+++..++++....   ..|+.+.......+.+++++|+|++|.+.|+..++-+-++.+.                    
T Consensus        90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~  166 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS  166 (652)
T ss_pred             HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence            34555666655554   3456666677888999999999999999999986544332210                    


Q ss_pred             --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CC---C---H-----HHHHHHHHHHHHhcCCHHHHHH
Q 027087          133 --------EYARVGRALALYEVGDREEAIAEMEDVSISL----KG---Y---P-----EVHAALAAALYVDKHALLLAEN  189 (228)
Q Consensus       133 --------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~----~~---~---p-----~~~~~la~~l~~~~~~~~~A~~  189 (228)
                              ---+||.+.++...|+|.+|++.++.+++..    ..   +   .     -++..++.++.. .|+.++|..
T Consensus       167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~-~Gqt~ea~~  245 (652)
T KOG2376|consen  167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL-QGQTAEASS  245 (652)
T ss_pred             ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-hcchHHHHH
Confidence                    0147999999999999999999999994321    11   1   1     234556666666 458899999


Q ss_pred             HHHHHHhcCCCCCch
Q 027087          190 QFTIATLLDPHYTDL  204 (228)
Q Consensus       190 ~~~~al~l~P~~~~~  204 (228)
                      .|...++.+|.+...
T Consensus       246 iy~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  246 IYVDIIKRNPADEPS  260 (652)
T ss_pred             HHHHHHHhcCCCchH
Confidence            999999999987753

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.00062  Score=58.59  Aligned_cols=126  Identities=15%  Similarity=0.082  Sum_probs=90.0

Q ss_pred             CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087           77 PLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM  156 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~  156 (228)
                      ..++++.......+.+|.+-..+..+|-+|+...+|..|.++|++.-.+.|...+   -.+-.+..+++.+.+.+|+...
T Consensus        25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q---YrlY~AQSLY~A~i~ADALrV~  101 (459)
T KOG4340|consen   25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ---YRLYQAQSLYKACIYADALRVA  101 (459)
T ss_pred             hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH---HHHHHHHHHHHhcccHHHHHHH
Confidence            3455555555556888888888999999999999999999999999999998877   4777788888888888887766


Q ss_pred             HHHHH------------------------------hcC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          157 EDVSI------------------------------SLK--GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       157 ~~al~------------------------------~~~--~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ..+..                              ..|  ++.+...+.|-+++. .|++++|.+-|+.+++..--.+-.
T Consensus       102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpll  180 (459)
T KOG4340|consen  102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLL  180 (459)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchh
Confidence            55411                              011  122334444444555 468888888888888876655554


Q ss_pred             hh
Q 027087          205 SY  206 (228)
Q Consensus       205 ~~  206 (228)
                      .+
T Consensus       181 AY  182 (459)
T KOG4340|consen  181 AY  182 (459)
T ss_pred             HH
Confidence            44

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.65  E-value=0.00013  Score=41.46  Aligned_cols=31  Identities=29%  Similarity=0.203  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKG  165 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~  165 (228)
                      +++.+|.+++.+|++++|++.|++++...|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666665544443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.65  E-value=0.0017  Score=49.72  Aligned_cols=95  Identities=21%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch-------hH------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087          100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAF-------SE------------YARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus       100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~-------~~------------~a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      ...|......|+.+.++..+++++.+..+...       |.            -+...++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            33344455556666666666666655422111       00            123344555556666666666666666


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027087          161 ISLKGYPEVHAALAAALYVDKHALLLAENQFTIAT  195 (228)
Q Consensus       161 ~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al  195 (228)
                      ...|.+..++..+-.++... |+..+|++.|++..
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~-g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQ-GRRAEALRVYERYR  123 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence            66666666666666666553 35566666666553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.00083  Score=59.03  Aligned_cols=99  Identities=21%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---------
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---------  167 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---------  167 (228)
                      ..-..+|.++++.|||++|+..|.-+...+--+.+   .+.|++.+++-+|.|.+|...-.++    +.+|         
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e---l~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhl  130 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE---LGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHL  130 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc---cchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHH
Confidence            44567789999999999999999999886655566   7999999999999999999988776    2222         


Q ss_pred             ---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          168 ---------------------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       168 ---------------------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                                           +-...++.+.|... .|++|++.|+++|.-+|++--
T Consensus       131 ahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn~ey~a  186 (557)
T KOG3785|consen  131 AHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDNPEYIA  186 (557)
T ss_pred             HHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcChhhhh
Confidence                                 11223445566644 799999999999999998764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.60  E-value=0.0031  Score=57.61  Aligned_cols=101  Identities=13%  Similarity=0.085  Sum_probs=60.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHH
Q 027087          100 LEKGRELQAIGDFNKALQYFTLVVENYKD--FAFSEYARVGRALALYEVGDREEAIAEMEDVSISL--KGYPEVHAALAA  175 (228)
Q Consensus       100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~p~~~~~la~  175 (228)
                      ..++.+..+.|+.++||+.|+..++..|.  +..   .+.|+-.++..+++|.++.+.+.+- ..+  |+.....+.-+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~---IrenLie~LLelq~Yad~q~lL~kY-dDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN---IRENLIEALLELQAYADVQALLAKY-DDISLPKSATICYTAAL  338 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh---HHHHHHHHHHhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHH
Confidence            45577777788888888888888777665  233   6778888888888888877777775 111  122222222222


Q ss_pred             HHHHhcCC---------------HHHHHHHHHHHHhcCCCCCch
Q 027087          176 ALYVDKHA---------------LLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       176 ~l~~~~~~---------------~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .-++..++               -..|.+...+|++.||+-+..
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            11111111               123557778888888877653

The molecular function of this protein is uncertain.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.57  E-value=0.00016  Score=40.83  Aligned_cols=32  Identities=28%  Similarity=0.625  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDF  129 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~  129 (228)
                      +++++|.++.+.|++++|+..|+++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56777777777777777777777777777753

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.55  E-value=7.2e-05  Score=65.02  Aligned_cols=95  Identities=18%  Similarity=0.075  Sum_probs=80.3

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.++..+..++.++|..+..|-.++.++.++++...||..++.+++++|+...   .+-.+|.+...+|++++|..+
T Consensus       128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~---~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK---GYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc---ccchhhHHHHHhhchHHHHHH
Confidence            33566777777889999999999999999999999999999999999999999998   889999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHH
Q 027087          156 MEDVSISLKGYPEVHAALA  174 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la  174 (228)
                      ++.+.. +.-+++.-..+-
T Consensus       205 l~~a~k-ld~dE~~~a~lK  222 (377)
T KOG1308|consen  205 LALACK-LDYDEANSATLK  222 (377)
T ss_pred             HHHHHh-ccccHHHHHHHH
Confidence            999932 333444433333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.0014  Score=55.58  Aligned_cols=113  Identities=18%  Similarity=0.060  Sum_probs=92.7

Q ss_pred             HHHhcC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087           87 AAVSSR-VSDALELLEKGRELQAIGDFNKALQYFTLVVENY------KDFAFSEYARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus        87 ~al~~~-p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~------P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      ..++.+ |.++.....+|.+.++.||.+.|...|+++-+..      -+.-.   ...|.+.++...+++.+|...|.+.
T Consensus       202 ~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~---V~~n~a~i~lg~nn~a~a~r~~~~i  278 (366)
T KOG2796|consen  202 SVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM---VLMNSAFLHLGQNNFAEAHRFFTEI  278 (366)
T ss_pred             HHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH---HHhhhhhheecccchHHHHHHHhhc
Confidence            344555 6678888899999999999999999999654322      12233   5788899999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          160 SISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       160 l~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ++.++.++.+.++.+.|+...| +...|++..+.++.++|...-
T Consensus       279 ~~~D~~~~~a~NnKALcllYlg-~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  279 LRMDPRNAVANNNKALCLLYLG-KLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             cccCCCchhhhchHHHHHHHHH-HHHHHHHHHHHHhccCCccch
Confidence            8888889988888998888854 789999999999999997554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.52  E-value=0.002  Score=61.99  Aligned_cols=57  Identities=14%  Similarity=-0.051  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087          136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATL  196 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~  196 (228)
                      +..+...|.+.|++++|.+.|++.   ...|...+..+...+.. .|+.++|.+.|++.++
T Consensus       363 ~~~Li~~y~k~G~~~~A~~vf~~m---~~~d~~t~n~lI~~y~~-~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        363 NTALVDLYSKWGRMEDARNVFDRM---PRKNLISWNALIAGYGN-HGRGTKAVEMFERMIA  419 (697)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHhC---CCCCeeeHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            444555555555566666655555   33444455555555544 3456666666666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.51  E-value=0.0033  Score=61.98  Aligned_cols=124  Identities=15%  Similarity=0.050  Sum_probs=87.2

Q ss_pred             CCCchHHHHHHHHHHhcChh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHc
Q 027087           75 YDPLTQAEKDASAAVSSRVS-----DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEV  146 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~-----~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~  146 (228)
                      .+..+.+...+..+++..+.     ...+...+|.++...|++++|+..+++++........   ..+++.++|.+++..
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            44556666666666653332     2345678899999999999999999999876543211   123567889999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCC-----H---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          147 GDREEAIAEMEDVSISLKGY-----P---EVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       147 g~~~~A~~~~~~al~~~~~~-----p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      |++++|...+++++......     +   ..+..++.+++.. |++++|...+++++.+..
T Consensus       545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-ARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhHHhhh
Confidence            99999999999986643321     1   2344567777774 688999999998887644

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.50  E-value=0.00019  Score=63.99  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=80.2

Q ss_pred             CCCchHHHHHHHHHHhc------ChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhcCC
Q 027087           75 YDPLTQAEKDASAAVSS------RVSDALELLEKGRELQAIGD--------------------FNKALQYFTLVVENYKD  128 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~------~p~~a~a~~~lG~~~~~~g~--------------------~~~Ai~~~~~Al~l~P~  128 (228)
                      ....++|+.++.+-+..      .-..+.++||+|++|...|+                    ++.|.++|..-+++.-.
T Consensus       108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~  187 (639)
T KOG1130|consen  108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK  187 (639)
T ss_pred             hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666655422      12346789999999977665                    23455555555544332


Q ss_pred             Cch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          129 FAF---SEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       129 ~~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      ..+   .+.++-|+|+.||-+|+|++|+..-+.=+.+...+-      .++.++|.++... |+++.|+++|++.+.+
T Consensus       188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl-g~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL-GNFELAIEHYKLTLNL  264 (639)
T ss_pred             hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh-cccHhHHHHHHHHHHH
Confidence            211   123677889999999999999887776655544432      4677888888884 5889999999887655

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.0056  Score=51.83  Aligned_cols=119  Identities=15%  Similarity=0.122  Sum_probs=80.8

Q ss_pred             HHHHHHHHHH----HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087           98 ELLEKGRELQ----AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL  173 (228)
Q Consensus        98 a~~~lG~~~~----~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l  173 (228)
                      .+..++.++.    ..+++.+|.-.|+..-+.-|-.+.   ..+.++.|+..+|||++|...++.++...+++|+.+.++
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~---llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPL---LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChH---HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            3444444443    235677777777777664444455   678888888888999999999998888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCChhHHHHHHHhhc
Q 027087          174 AAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFIT  226 (228)
Q Consensus       174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (228)
                      -.+-...|.+.+.-.+...+....+|..+-.-...+       -...|+|+..
T Consensus       248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~e-------keaeFDrl~~  293 (299)
T KOG3081|consen  248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNE-------KEAEFDRLVL  293 (299)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHH-------HHHHHHHHHH
Confidence            777666666655556666677777777665432222       1556666654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.001  Score=57.31  Aligned_cols=71  Identities=18%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             HhcCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087           89 VSSRV--SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS  162 (228)
Q Consensus        89 l~~~p--~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  162 (228)
                      ++.-|  +++....+.|-++++.|+|++|++-|+.|++..--.+.   .-+|++.++++.|+++.|++...+++..
T Consensus       135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---lAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---LAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            34445  67888999999999999999999999999999998888   8899999999999999999998887543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.48  E-value=0.0015  Score=56.16  Aligned_cols=123  Identities=15%  Similarity=-0.038  Sum_probs=84.5

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQA-IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM  156 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~-~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~  156 (228)
                      ...+...+.++.+..+....+|...+.+-+. .++.+.|...|+++++..|++..   .|......+...|+.+.|...|
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---~~~~Y~~~l~~~~d~~~aR~lf   93 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---FWLEYLDFLIKLNDINNARALF   93 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---HHHHHHHHHHHTT-HHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHhCcHHHHHHHH
Confidence            3445555566665555677888888888666 56666699999999999999888   7888888888899999999999


Q ss_pred             HHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          157 EDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       157 ~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ++++..++.+.   ..+......-.. -|+.+.....++++.+..|+....
T Consensus        94 er~i~~l~~~~~~~~iw~~~i~fE~~-~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen   94 ERAISSLPKEKQSKKIWKKFIEFESK-YGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HHHCCTSSCHHHCHHHHHHHHHHHHH-HS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhhhHH
Confidence            99965555444   233333333333 368888888888999888885543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.47  E-value=0.0013  Score=58.20  Aligned_cols=118  Identities=15%  Similarity=-0.045  Sum_probs=86.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..++|.......++...+.-  +..+ .-..+-+++..=++..++.++..|+++.   .+..+|..+++.+.+.+
T Consensus       273 li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~---L~~tLG~L~~k~~~w~k  346 (400)
T COG3071         273 LIRLGDHDEAQEIIEDALKRQWDPR--LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL---LLSTLGRLALKNKLWGK  346 (400)
T ss_pred             HHHcCChHHHHHHHHHHHHhccChh--HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChh---HHHHHHHHHHHhhHHHH
Confidence            4567888888888777776544433  1111 1134568888888888999999999998   88999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      |...|+.++. ...+...+..+|.++-. .|+..+|.+.++.++.+
T Consensus       347 A~~~leaAl~-~~~s~~~~~~la~~~~~-~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         347 ASEALEAALK-LRPSASDYAELADALDQ-LGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHh-cCCChhhHHHHHHHHHH-cCChHHHHHHHHHHHHH
Confidence            9999998822 22334566677887777 45788999988888754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0073  Score=51.82  Aligned_cols=103  Identities=22%  Similarity=0.147  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV-----------------  159 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a-----------------  159 (228)
                      +.-+..+.-....|++.+|...|..++..+|++.+   +...++.+|...|+.++|...+...                 
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~---~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~  211 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSE---AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE  211 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccch---HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            34455666777888888888888888888888877   7888888888888887766665542                 


Q ss_pred             -----------------HHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          160 -----------------SISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       160 -----------------l~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                                       +..+|.|.++.+.++..+.. .|+.++|.+++-..++.|-.+.+
T Consensus       212 ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d  271 (304)
T COG3118         212 LLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDRGFED  271 (304)
T ss_pred             HHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccccC
Confidence                             22345666777777777766 45778888888888887766555

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.44  E-value=0.0047  Score=48.52  Aligned_cols=78  Identities=21%  Similarity=0.231  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY  178 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~  178 (228)
                      +.....+-.+.++.+++...++..-.+.|+++.   ....-|+++...|++.+|+..|+.+...-+..|-+...++.|++
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e---~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPE---LDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            334444444455555555555555555555555   45555555555555555555555553333344444444444444


Q ss_pred             H
Q 027087          179 V  179 (228)
Q Consensus       179 ~  179 (228)
                      .
T Consensus        90 ~   90 (160)
T PF09613_consen   90 A   90 (160)
T ss_pred             H
Confidence            4

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.44  E-value=0.0014  Score=50.32  Aligned_cols=64  Identities=22%  Similarity=0.083  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS  162 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  162 (228)
                      ..+...++..+...|++++|+..+++++.++|.+..   ++..+-.+|...|+..+|++.|++....
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~---~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEE---AYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH---HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            345677788899999999999999999999999999   9999999999999999999999998443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.42  E-value=0.00035  Score=40.80  Aligned_cols=29  Identities=28%  Similarity=0.496  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENY  126 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~  126 (228)
                      ++.++|.++.++|+|++|+..|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46778888888888888888888865544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.40  E-value=0.00013  Score=65.08  Aligned_cols=121  Identities=15%  Similarity=0.088  Sum_probs=88.3

Q ss_pred             chHHHHHHHHHHhcC--hh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHHcCC
Q 027087           78 LTQAEKDASAAVSSR--VS----DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE---YARVGRALALYEVGD  148 (228)
Q Consensus        78 ~~~a~~~~~~al~~~--p~----~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~---~a~~~la~~~~~~g~  148 (228)
                      .+.|..++..-+++.  -.    ...++-++|+.|+-+|+|++||..-+.-+++.-.+.+-+   .|+.|+|+++..+|+
T Consensus       171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~  250 (639)
T KOG1130|consen  171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN  250 (639)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence            344555555444321  12    234677899999999999999999888888876654311   378899999999999


Q ss_pred             HHHHHHHHHHHHHhc---CC-C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          149 REEAIAEMEDVSISL---KG-Y--PEVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       149 ~~~A~~~~~~al~~~---~~-~--p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      ++.|+++|+..+.+.   .+ .  ...-+.||..|.- +++++.|+.++.+-|.+.-
T Consensus       251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            999999999985432   21 1  2456778888877 5689999999999887754

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.39  E-value=0.002  Score=45.82  Aligned_cols=48  Identities=23%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF  129 (228)
Q Consensus        82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~  129 (228)
                      +......++.+|+|..+.+.++..+...|++++|++.+-.+++.++++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            344455667777777777777777777777777777777777777766

>PLN03077 Protein ECB2; Provisional

Probab=97.39  E-value=0.0089  Score=58.95  Aligned_cols=132  Identities=17%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             CCchHHHHHHHHHHh--cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           76 DPLTQAEKDASAAVS--SRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN---YKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        76 ~~~~~a~~~~~~al~--~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l---~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      +..+.|...+....+  ..|+ ...+..+-..+.+.|++++|...|+...+.   .|+. .   .+..+..++.+.|+++
T Consensus       568 G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~---~y~~lv~~l~r~G~~~  642 (857)
T PLN03077        568 GKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-K---HYACVVDLLGRAGKLT  642 (857)
T ss_pred             CCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-H---HHHHHHHHHHhCCCHH
Confidence            344445555544443  2232 333444445566677777777777766633   2332 2   4667777777788888


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh-----hhhcCCCCh
Q 027087          151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY-----VKDTKHWPP  215 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~-----~~~~~~~~~  215 (228)
                      +|.+.+++. . ...++..|..+-.++.. .++.+.++...+++++++|++...+.     .....+|.+
T Consensus       643 eA~~~~~~m-~-~~pd~~~~~aLl~ac~~-~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        643 EAYNFINKM-P-ITPDPAVWGALLNACRI-HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             HHHHHHHHC-C-CCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence            887777775 1 23345556665554433 56778888888888899998777544     233456766

>PRK10941 hypothetical protein; Provisional

Probab=97.36  E-value=0.0027  Score=54.27  Aligned_cols=71  Identities=11%  Similarity=0.015  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      ...|+=.++.+.++++.|+.+.++.+.++|+++.   -+--+|.+|.++|.+..|..+++.-+...|.+|++..
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            3567788899999999999999999999999997   8899999999999999999999999999999996654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.35  E-value=0.009  Score=58.95  Aligned_cols=125  Identities=18%  Similarity=0.049  Sum_probs=87.3

Q ss_pred             CCCchHHHHHHHHHHhc-----Ch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSS-----RV-SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF-----AFSEYARVGRALAL  143 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~-----~p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~-----~~~~~a~~~la~~~  143 (228)
                      .+..+.+...+..++..     ++ .....+.++|.++...|++++|+..+++++++....     ....+.+..+|.++
T Consensus       504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  583 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL  583 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            34445555555555422     11 123466788999999999999999999998874321     21123567889999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          144 YEVGDREEAIAEMEDVSISLKGY-----PEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al~~~~~~-----p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      +..|++++|...+++++......     ...+..++.+... .|++++|.+.+++++.+...
T Consensus       584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A~~~l~~a~~~~~~  644 (903)
T PRK04841        584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA-RGDLDNARRYLNRLENLLGN  644 (903)
T ss_pred             HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999996654321     2344556676666 56899999999999877543

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.32  E-value=0.011  Score=59.56  Aligned_cols=95  Identities=14%  Similarity=-0.024  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-KGYPEVHAA  172 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~p~~~~~  172 (228)
                      ...|..+...|.+.|++++|+..|++..+.  .|+. .   .+..+...+.+.|++++|.+.++++.... +.+...+..
T Consensus       614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~---TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns  689 (1060)
T PLN03218        614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-V---FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS  689 (1060)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            344444444555555555555555554443  2331 1   34444444455555555555555542211 112233444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 027087          173 LAAALYVDKHALLLAENQFTIAT  195 (228)
Q Consensus       173 la~~l~~~~~~~~~A~~~~~~al  195 (228)
                      +..++.. .|++++|++.|++..
T Consensus       690 LI~ay~k-~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        690 LMGACSN-AKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHh-CCCHHHHHHHHHHHH
Confidence            4444444 334555555555443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.24  E-value=0.00051  Score=37.08  Aligned_cols=32  Identities=25%  Similarity=0.497  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKD  128 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~  128 (228)
                      ..++++|.++...|++++|+..|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35677777777777777777777777777665

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03077 Protein ECB2; Provisional

Probab=97.21  E-value=0.0088  Score=59.00  Aligned_cols=118  Identities=15%  Similarity=0.045  Sum_probs=89.3

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      .+.+..+.|...+...    ..|...|..+...|.+.|+.++|++.|++..+.  .|+..    .+..+-.++...|+.+
T Consensus       535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~----T~~~ll~a~~~~g~v~  606 (857)
T PLN03077        535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV----TFISLLCACSRSGMVT  606 (857)
T ss_pred             HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc----cHHHHHHHHhhcChHH
Confidence            3444555555554443    567788999999999999999999999998774  57765    4666777889999999


Q ss_pred             HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          151 EAIAEMEDVSISLKGYP--EVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p--~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      +|.+.|+++.......|  +.+..+..++.. .|++++|.+.+++. .+.|+
T Consensus       607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGR-AGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCCHHHHHHHHHHC-CCCCC
Confidence            99999999954444444  566677777777 67999999999876 35565

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.20  E-value=0.013  Score=50.39  Aligned_cols=102  Identities=17%  Similarity=0.053  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV-GDREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      .+|..+.....+.+..+.|...|.+|++..+-...   .|...|.+.+.. ++.+.|.+.|+.++...+.+++.+..+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~---vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH---VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH---HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            35777788888888899999999999865555566   788999998885 55555999999999999999999988888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          176 ALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       176 ~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      .+... ++.+.|+..|++++..-|...
T Consensus        79 ~l~~~-~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   79 FLIKL-NDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHHHT-T-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHHHh-CcHHHHHHHHHHHHHhcCchh
Confidence            88874 588999999999999877655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.13  E-value=0.0009  Score=37.56  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKG  165 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~  165 (228)
                      +++++|.++.+.|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6777888888888888888888887555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.10  E-value=0.02  Score=50.83  Aligned_cols=106  Identities=17%  Similarity=0.112  Sum_probs=82.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL  173 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l  173 (228)
                      +++......+.-+.+.|++++|.+....+++..=|...    ...  .-...-++.+.=++..++.+...|.+|..+..|
T Consensus       261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL  334 (400)
T COG3071         261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL  334 (400)
T ss_pred             cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence            34566667777788999999999999999876554321    111  223456888888999999988899999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          174 AAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |..++. .+.+.+|.++|+.+++..|...+..+
T Consensus       335 G~L~~k-~~~w~kA~~~leaAl~~~~s~~~~~~  366 (400)
T COG3071         335 GRLALK-NKLWGKASEALEAALKLRPSASDYAE  366 (400)
T ss_pred             HHHHHH-hhHHHHHHHHHHHHHhcCCChhhHHH
Confidence            998888 45899999999999999998766433

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.10  E-value=0.04  Score=55.67  Aligned_cols=116  Identities=11%  Similarity=0.022  Sum_probs=66.9

Q ss_pred             chHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           78 LTQAEKDASAAVSSRV-SDALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      .+.+...+....+... -|...|..+...|.+.|++++|+..|++..+.  .|+. .   .|..+...+.+.|++++|.+
T Consensus       488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-v---TYnsLI~a~~k~G~~deA~~  563 (1060)
T PLN03218        488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-V---VFNALISACGQSGAVDRAFD  563 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-H---HHHHHHHHHHHCCCHHHHHH
Confidence            3444444444333221 14556666677777777777777777776543  2442 2   56667777777777777777


Q ss_pred             HHHHHHHh---cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          155 EMEDVSIS---LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       155 ~~~~al~~---~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      .|+++...   +..|...+..+-.++.. .|++++|++.|+++.+.+
T Consensus       564 lf~eM~~~~~gi~PD~vTynaLI~ay~k-~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        564 VLAEMKAETHPIDPDHITVGALMKACAN-AGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             HHHHHHHhcCCCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcC
Confidence            77776332   11233344445555555 456777777777776654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.08  E-value=0.019  Score=55.34  Aligned_cols=100  Identities=18%  Similarity=0.044  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVEN---YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l---~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      .+..+-.++.+.|+.++|...|+...+.   .|+..    .+..+...|.+.|++++|.+.+++. - ...+...+..+.
T Consensus       428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~----~y~~li~~l~r~G~~~eA~~~~~~~-~-~~p~~~~~~~Ll  501 (697)
T PLN03081        428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM----HYACMIELLGREGLLDEAYAMIRRA-P-FKPTVNMWAALL  501 (697)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc----chHhHHHHHHhcCCHHHHHHHHHHC-C-CCCCHHHHHHHH
Confidence            3444445555555555555555555442   23322    3566667777777777777776654 0 112335566666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .++.. .|+++.|+..++++++++|++...
T Consensus       502 ~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~  530 (697)
T PLN03081        502 TACRI-HKNLELGRLAAEKLYGMGPEKLNN  530 (697)
T ss_pred             HHHHH-cCCcHHHHHHHHHHhCCCCCCCcc
Confidence            65655 567888988899999999886654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.08  E-value=0.009  Score=42.49  Aligned_cols=75  Identities=17%  Similarity=0.121  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 027087          115 ALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PEVHAALAAALYVDKHALLLAENQFT  192 (228)
Q Consensus       115 Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~~~~~la~~l~~~~~~~~~A~~~~~  192 (228)
                      .+..+++.++.+|++.+   +.+.+|..+...|++++|++.+-++++..+.+  -.+...+-.++-..|.. +.-...|+
T Consensus         7 ~~~al~~~~a~~P~D~~---ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~-~plv~~~R   82 (90)
T PF14561_consen    7 DIAALEAALAANPDDLD---ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG-DPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHHSTT-HH---HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT--HHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC-ChHHHHHH
Confidence            46788999999999999   99999999999999999999999996655543  24555555544444432 33333344


Q ss_pred             H
Q 027087          193 I  193 (228)
Q Consensus       193 ~  193 (228)
                      +
T Consensus        83 R   83 (90)
T PF14561_consen   83 R   83 (90)
T ss_dssp             H
T ss_pred             H
Confidence            3

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.012  Score=51.59  Aligned_cols=91  Identities=13%  Similarity=-0.023  Sum_probs=38.9

Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087           85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN-YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus        85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      +++.++..|.|-.++-.--.+++..|+.+.-...+++++-. +++-+-..|..-.++..+.+.|-|++|.+..++++..+
T Consensus       126 wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN  205 (491)
T KOG2610|consen  126 WDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN  205 (491)
T ss_pred             HHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC
Confidence            33444444555444444444444444444444444444433 33333222333334444444444444444444444443


Q ss_pred             CCCHHHHHHHHH
Q 027087          164 KGYPEVHAALAA  175 (228)
Q Consensus       164 ~~~p~~~~~la~  175 (228)
                      +.|..+....+.
T Consensus       206 ~~D~Wa~Ha~aH  217 (491)
T KOG2610|consen  206 RFDCWASHAKAH  217 (491)
T ss_pred             CcchHHHHHHHH
Confidence            333333333333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.018  Score=48.52  Aligned_cols=65  Identities=23%  Similarity=0.166  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      -.+.|...++...|+|-++++.-..++..+|++..   |++.+|.++...=+.++|.++|.++   +..+|
T Consensus       231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK---A~frRakAhaa~Wn~~eA~~D~~~v---L~ldp  295 (329)
T KOG0545|consen  231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK---AYFRRAKAHAAVWNEAEAKADLQKV---LELDP  295 (329)
T ss_pred             HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH---HHHHHHHHHHhhcCHHHHHHHHHHH---HhcCh
Confidence            45789999999999999999999999999999999   9999999999999999999999999   55565

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.94  E-value=0.023  Score=55.12  Aligned_cols=124  Identities=12%  Similarity=0.016  Sum_probs=87.7

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ...|.......++..|+..-+..-.|.++.++|+.++|..+++..-...+++..   .+-.+-.+|.++|++++|...|+
T Consensus        25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~---tLq~l~~~y~d~~~~d~~~~~Ye  101 (932)
T KOG2053|consen   25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDL---TLQFLQNVYRDLGKLDEAVHLYE  101 (932)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchH---HHHHHHHHHHHHhhhhHHHHHHH
Confidence            345666677788999999888899999999999999999999888888888877   88899999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +++...|. -+....+-.++.+.+ .|.+=.+.--+.-+.-|+.+-.-|
T Consensus       102 ~~~~~~P~-eell~~lFmayvR~~-~yk~qQkaa~~LyK~~pk~~yyfW  148 (932)
T KOG2053|consen  102 RANQKYPS-EELLYHLFMAYVREK-SYKKQQKAALQLYKNFPKRAYYFW  148 (932)
T ss_pred             HHHhhCCc-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCcccchHH
Confidence            99444443 234444444444432 333333322223334555544433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.94  E-value=0.0024  Score=37.20  Aligned_cols=26  Identities=27%  Similarity=0.161  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      ++.++|.+|.++|++++|++.|++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47889999999999999999999964

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.89  E-value=0.0053  Score=39.22  Aligned_cols=39  Identities=21%  Similarity=0.164  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR  139 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~l  139 (228)
                      .+|.++..+++.|+|++|....+.+++.+|++.+   +....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q---a~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ---AQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH---HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH---HHHHH
Confidence            3567777778888888888888888888888877   54443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.88  E-value=0.003  Score=35.78  Aligned_cols=30  Identities=23%  Similarity=0.120  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLK  164 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~  164 (228)
                      +++.+|.++..+|++++|++.|++++...|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            578888888888888888888888866555

...

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.85  E-value=0.004  Score=53.89  Aligned_cols=77  Identities=14%  Similarity=-0.013  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      +..-.+.+.-..+.|+.++|...|+-|+.++|++++   ++..+|......++.-+|-.+|-+++...|.+.+++.+...
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---ILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            445566677778999999999999999999999999   99999999999999999999999998888888888777653

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.85  E-value=0.018  Score=51.39  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-hcCCC
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVEN----YKDFAFSEYARVGRALALYE---VGDREEAIAEMEDVSI-SLKGY  166 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~-~~~~~  166 (228)
                      +++...++=..|...++|+.-+...+..-.+    -++...   ..+.+|.++.+   .|+.++|+..+..++. ....+
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~---i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~  216 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHN---IKFQYAFALNRRNKPGDREKALQILLPVLESDENPD  216 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchH---HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence            3556678878899999999999999887666    344455   78899999999   9999999999999533 33456


Q ss_pred             HHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCC
Q 027087          167 PEVHAALAAALYVD--------KHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       167 p~~~~~la~~l~~~--------~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      |+.+-.+|.++...        ....++|+.+|+++.+++|++-
T Consensus       217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            88888888876554        1357899999999999998643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.82  E-value=0.023  Score=57.57  Aligned_cols=103  Identities=15%  Similarity=0.006  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPEVHAALA  174 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~~~~~la  174 (228)
                      ..|..+..+|.+.+++++|.+.|+..++.--+-..   .|..+|..++.+++-++|...+.+++.-+|.  +.+...-.+
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~---vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK---VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh---HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            34455555555555555565555555555444444   5555555555555555555555555555554  233333344


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      .+-|. .|+-+.++..|+-.+.-+|+=.+
T Consensus      1608 qLEFk-~GDaeRGRtlfEgll~ayPKRtD 1635 (1710)
T KOG1070|consen 1608 QLEFK-YGDAERGRTLFEGLLSAYPKRTD 1635 (1710)
T ss_pred             HHHhh-cCCchhhHHHHHHHHhhCccchh
Confidence            44444 23445555555555555554433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.81  E-value=0.0027  Score=59.05  Aligned_cols=99  Identities=16%  Similarity=0.026  Sum_probs=86.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 027087          103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKH  182 (228)
Q Consensus       103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~  182 (228)
                      |......|+.-.|++++.+|+.+.|....|  ...|++.++...|-..+|-..+.+++..+-..|-.++.+|.++..+ .
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v--~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l-~  690 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDV--PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL-K  690 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcc--cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH-h
Confidence            444456899999999999999999986664  5799999999999999999999999888867788888899988885 5


Q ss_pred             CHHHHHHHHHHHHhcCCCCCch
Q 027087          183 ALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       183 ~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +.+.|+++|+.|+.++|+....
T Consensus       691 ~i~~a~~~~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  691 NISGALEAFRQALKLTTKCPEC  712 (886)
T ss_pred             hhHHHHHHHHHHHhcCCCChhh
Confidence            8899999999999999998764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.80  E-value=0.051  Score=55.15  Aligned_cols=121  Identities=8%  Similarity=-0.016  Sum_probs=74.0

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD--FAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ...+.|...++..++.--+....|..+|..+.++.+-++|...+.+|++.-|.  +.+   ..-..+..-++.|+.+.+.
T Consensus      1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~---~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE---FISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred             hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH---HHHHHHHHHhhcCCchhhH
Confidence            33444444444444443445566666777777777777777777777777666  444   4556666667777777777


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ..|+..+...|.--+.|..+...-... ++.+-.+..|++++.+.=.
T Consensus      1621 tlfEgll~ayPKRtDlW~VYid~eik~-~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKH-GDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HHHHHHHhhCccchhHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCC
Confidence            777777555555556666555544443 3456677777777666533

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=0.028  Score=47.70  Aligned_cols=104  Identities=14%  Similarity=-0.043  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~p~~~~~  172 (228)
                      ++...-..++.++.+++-|+..+++..+++-+..     +..+|.++..    .+.+.+|.-.|++.-.+.+..|....+
T Consensus       138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t-----LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG  212 (299)
T KOG3081|consen  138 EAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT-----LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNG  212 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-----HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHcc
Confidence            3344445777899999999999999988876643     3445544443    355889999999995556666788888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          173 LAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++.+...+ ++|++|...++.+|..+++++++.-
T Consensus       213 ~Av~~l~~-~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  213 QAVCHLQL-GRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             HHHHHHHh-cCHHHHHHHHHHHHhccCCCHHHHH
Confidence            88888885 5999999999999999999988643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.098  Score=45.04  Aligned_cols=102  Identities=19%  Similarity=0.122  Sum_probs=75.6

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTL---------------------------------  121 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~---------------------------------  121 (228)
                      .+....+...+..++..+|++.++...++.++...|+.++|...+..                                 
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~  226 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ  226 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            34445555666777899999999999999999999999777665543                                 


Q ss_pred             -HHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHH
Q 027087          122 -VVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PEVHAALAAALYV  179 (228)
Q Consensus       122 -Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~~~~~la~~l~~  179 (228)
                       .+..+|++.+   +.+.+|..+...|++++|.+.+-..++.+...  ..+...+-.++..
T Consensus       227 ~~~aadPdd~~---aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~  284 (304)
T COG3118         227 RRLAADPDDVE---AALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA  284 (304)
T ss_pred             HHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence             2244788998   99999999999999999999999886554432  2444444443333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.011  Score=51.90  Aligned_cols=101  Identities=18%  Similarity=0.054  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHH------HHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG-YPE------VHA  171 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~p~------~~~  171 (228)
                      ....+.++...|++-+|-..+++.+.-.|.+-.   ++..--.+++.+|+.+.-...++++   +|. +++      .+-
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll---a~kfsh~a~fy~G~~~~~k~ai~kI---ip~wn~dlp~~sYv~G  179 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL---AVKFSHDAHFYNGNQIGKKNAIEKI---IPKWNADLPCYSYVHG  179 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhh---hhhhhhhHHHhccchhhhhhHHHHh---ccccCCCCcHHHHHHH
Confidence            344466677889999999999999999999988   8888888999999999999999999   665 442      222


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++..+.+ .|-|++|++.-++++++||.+..+.+
T Consensus       180 myaFgL~E-~g~y~dAEk~A~ralqiN~~D~Wa~H  213 (491)
T KOG2610|consen  180 MYAFGLEE-CGIYDDAEKQADRALQINRFDCWASH  213 (491)
T ss_pred             HHHhhHHH-hccchhHHHHHHhhccCCCcchHHHH
Confidence            34444555 46899999999999999999988655

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.0067  Score=53.51  Aligned_cols=85  Identities=15%  Similarity=0.117  Sum_probs=64.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Q 027087          106 LQAIGDFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAL  184 (228)
Q Consensus       106 ~~~~g~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~  184 (228)
                      +....||..|+..++-.+.++-+.. +   ....+|.|++.+|+|++|...|+-+......+.+.+.+++.+.+..| .|
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~---~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg-~Y  107 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDS---LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG-QY  107 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHH---HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH-HH
Confidence            3455788888888877765554433 3   56788999999999999999999995544444588999999999954 89


Q ss_pred             HHHHHHHHHH
Q 027087          185 LLAENQFTIA  194 (228)
Q Consensus       185 ~~A~~~~~~a  194 (228)
                      .+|.....++
T Consensus       108 ~eA~~~~~ka  117 (557)
T KOG3785|consen  108 IEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHhhC
Confidence            9998855443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.66  E-value=0.014  Score=56.52  Aligned_cols=90  Identities=22%  Similarity=0.213  Sum_probs=75.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCHH
Q 027087          107 QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALL  185 (228)
Q Consensus       107 ~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~p~~~~~la~~l~~~~~~~~  185 (228)
                      ...++|.+|+...++.++..|+..-   +....|.++.++|+.++|..+++.. ...+ .|-.....+-.+|.. .++++
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~---a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~~D~~tLq~l~~~y~d-~~~~d   94 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALY---AKVLKALSLFRLGKGDEALKLLEAL-YGLKGTDDLTLQFLQNVYRD-LGKLD   94 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHHhcCchhHHHHHhhh-ccCCCCchHHHHHHHHHHHH-Hhhhh
Confidence            4568999999999999999999886   9999999999999999999888887 3333 333455566666666 56899


Q ss_pred             HHHHHHHHHHhcCCCC
Q 027087          186 LAENQFTIATLLDPHY  201 (228)
Q Consensus       186 ~A~~~~~~al~l~P~~  201 (228)
                      +|...|++++..+|+.
T Consensus        95 ~~~~~Ye~~~~~~P~e  110 (932)
T KOG2053|consen   95 EAVHLYERANQKYPSE  110 (932)
T ss_pred             HHHHHHHHHHhhCCcH
Confidence            9999999999999993

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.62  E-value=0.02  Score=45.00  Aligned_cols=101  Identities=24%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+++.......--+.|+.++.-..-|.++...|+|.+|+..|+.+.+..|.++.   +--.++.|++.+||.+ -.
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~---~kALlA~CL~~~~D~~-Wr   97 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY---AKALLALCLYALGDPS-WR   97 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH---HHHHHHHHHHHcCChH-HH
Confidence            4455566666666666788999999999999999999999999999999998899887   8899999999998875 22


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      .+-+++ .....+|++......++..
T Consensus        98 ~~A~ev-le~~~d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   98 RYADEV-LESGADPDARALVRALLAR  122 (160)
T ss_pred             HHHHHH-HhcCCChHHHHHHHHHHHh
Confidence            223333 2233467666655554433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.60  E-value=0.083  Score=41.07  Aligned_cols=97  Identities=15%  Similarity=-0.016  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY  178 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~  178 (228)
                      +......-...++.+++...++..--+.|+.+.   ....-|+++...|++++|+..++++...-+..|-....++.|++
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            333444444578888888888888888888888   77888888888888888888888884433344655566677777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC
Q 027087          179 VDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       179 ~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      .++ + ..=..+-..+++.+++
T Consensus        90 al~-D-p~Wr~~A~~~le~~~~  109 (153)
T TIGR02561        90 AKG-D-AEWHVHADEVLARDAD  109 (153)
T ss_pred             hcC-C-hHHHHHHHHHHHhCCC
Confidence            643 3 4444445556655444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.60  E-value=0.01  Score=54.74  Aligned_cols=101  Identities=18%  Similarity=0.079  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV---GDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      +.+....-|+-....+....|+..|.+++...|+...   .+.|++.++.+.   |+.-.|+.....+++.++..-.+|+
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~---~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~  449 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIY---LLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF  449 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhH---HHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence            3333444444444444455555555555555555444   455555555442   3334444444444222222224555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          172 ALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       172 ~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      .|+.++.+. +++.+|++....+.-..|
T Consensus       450 ~la~aL~el-~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  450 RLARALNEL-TRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHHHHHH-hhHHHhhhhHHHHhhcCc
Confidence            555555553 245555554444444444

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.016  Score=50.58  Aligned_cols=62  Identities=18%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      ++..|+|++.+....|+|-.||....+++.++|.+..   +++.-+.|++++.++++|..++++.
T Consensus       118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K---a~~R~Akc~~eLe~~~~a~nw~ee~  179 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK---AYIRGAKCLLELERFAEAVNWCEEG  179 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh---hhhhhhHHHHHHHHHHHHHHHHhhh
Confidence            4667899999999999999999999999999999999   9999999999999999999999998

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.11  Score=43.47  Aligned_cols=107  Identities=20%  Similarity=0.124  Sum_probs=73.0

Q ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------
Q 027087           99 LLEKGRELQA-IGDFNKALQYFTLVVENYKDFAFSE---YARVGRALALYEVGDREEAIAEMEDVSISLKGYPE------  168 (228)
Q Consensus        99 ~~~lG~~~~~-~g~~~~Ai~~~~~Al~l~P~~~~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~------  168 (228)
                      +..+|.+|.. ..++++||.+|+++-+-......+.   ..+...+..-.++++|.+|+..|+++.+..-.++-      
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K  195 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK  195 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence            3466787775 4899999999999987665443210   12344445556789999999999999665555552      


Q ss_pred             HH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          169 VH-AALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       169 ~~-~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      -+ +.-|.|+.. ..+.-.+...+++-.+++|.+.+++=
T Consensus       196 dyflkAgLChl~-~~D~v~a~~ALeky~~~dP~F~dsRE  233 (288)
T KOG1586|consen  196 DYFLKAGLCHLC-KADEVNAQRALEKYQELDPAFTDSRE  233 (288)
T ss_pred             HHHHHHHHHhHh-cccHHHHHHHHHHHHhcCCcccccHH
Confidence            12 222344443 34667788889999999999998743

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.47  E-value=0.0083  Score=35.29  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVEN  125 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l  125 (228)
                      ++.++|.++..+|++++|+..+++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4555555555555555555555555544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.023  Score=48.30  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHAAL  173 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~l  173 (228)
                      .++.+.+.++.-+++|.+|...|++.+..||.++.   +-+|.|.|+.-.|+..+|++..+.++..+|...   ...+++
T Consensus       253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~---a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL  329 (366)
T KOG2796|consen  253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV---ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL  329 (366)
T ss_pred             HHHhhhhhheecccchHHHHHHHhhccccCCCchh---hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence            34556678888999999999999999999999999   899999999999999999999999955555432   344455


Q ss_pred             HH
Q 027087          174 AA  175 (228)
Q Consensus       174 a~  175 (228)
                      ..
T Consensus       330 ~t  331 (366)
T KOG2796|consen  330 TT  331 (366)
T ss_pred             HH
Confidence            44

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.33  E-value=0.029  Score=39.98  Aligned_cols=60  Identities=22%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087          106 LQAIGDFNKALQYFTLVVENYKDFAF------SEYARVGRALALYEVGDREEAIAEMEDVSISLKG  165 (228)
Q Consensus       106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~  165 (228)
                      ..+.|||.+|++.+.+..........      ..++..++|.++...|++++|+..+++++.....
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            46789999999998888776544322      2368899999999999999999999999766553

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.27  E-value=0.0063  Score=50.60  Aligned_cols=47  Identities=17%  Similarity=0.100  Sum_probs=23.0

Q ss_pred             HHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           83 KDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF  129 (228)
Q Consensus        83 ~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~  129 (228)
                      ..+.+++++-|+++..|+.+|....+.|+++.|.+.|++.++++|++
T Consensus        16 ely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976          16 ELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             HHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            33444444445555555555554445555555555555555555444

>smart00028 TPR Tetratricopeptide repeats

Probab=96.23  E-value=0.0095  Score=31.71  Aligned_cols=27  Identities=26%  Similarity=0.220  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      +++++|.++..+|++++|+..+++++.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            466777777777777777777777743

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.23  E-value=0.027  Score=48.93  Aligned_cols=72  Identities=13%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhh
Q 027087          136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVK  208 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~  208 (228)
                      -.+.+.-..+.|+.++|...|+.++...|.+|+++..+|.+.-. .+++-+|-.+|.+||.++|.+.++...+
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR  190 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNR  190 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence            34555566788999999999999999999999999999997766 5688999999999999999998876543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.13  E-value=0.056  Score=49.62  Aligned_cols=116  Identities=16%  Similarity=0.061  Sum_probs=86.2

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----------------------h
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF----------------------S  132 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----------------------~  132 (228)
                      -.....-+..+.++++++|+-+.+|.-++.-  ...-..+|++.|+++++.......                      -
T Consensus       181 ERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            3445556677788999999999998877542  234567788888887765322100                      0


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087          133 EYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PEVHAALAAALYVDKHALLLAENQFTI  193 (228)
Q Consensus       133 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~~~~~la~~l~~~~~~~~~A~~~~~~  193 (228)
                      .|+...+|++..++|+.+||++.++++++..|..  -.++.+|-.++..+ ++|.++...+.+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel-q~Yad~q~lL~k  320 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL-QAYADVQALLAK  320 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence            2677889999999999999999999997766652  37899999999885 588999886555

The molecular function of this protein is uncertain.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.12  E-value=0.39  Score=36.10  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=66.3

Q ss_pred             HHHHHH--HHHHHHcCCHHHHHHHHHHHHHhcCCCch---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 027087           97 LELLEK--GRELQAIGDFNKALQYFTLVVENYKDFAF---------SEYARVGRALALYEVGDREEAIAEMEDVSIS---  162 (228)
Q Consensus        97 ~a~~~l--G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~---  162 (228)
                      .+|+.+  |.-....|-|++|...++++++..-.-+.         .+..+..++-++..+|+|++++...+++|.-   
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            345544  34445679999999999999988754321         1124667888899999999998888888542   


Q ss_pred             ---cCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          163 ---LKGYP-----EVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       163 ---~~~~p-----~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                         +..+-     .+.+..+.++-. .|+.++|...|+.+-+.
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~-~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEG-LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence               22332     234556676766 45889999999988763

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.12  E-value=0.077  Score=40.61  Aligned_cols=72  Identities=22%  Similarity=0.170  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          135 ARVGRALALYEVGD---REEAIAEMEDVSISLKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       135 a~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      ..+|+++++....+   ..+.+.+++..+.  ..+|    +..++++..++..+ +|+.++.+.+..|+.+|++.++.-.
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlk-eY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLK-EYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHh-hHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            57777777777654   3467777777743  1233    66677777777744 7888888888888888887776544


Q ss_pred             hh
Q 027087          208 KD  209 (228)
Q Consensus       208 ~~  209 (228)
                      ++
T Consensus       111 k~  112 (149)
T KOG3364|consen  111 KE  112 (149)
T ss_pred             HH
Confidence            33

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.99  E-value=0.2  Score=44.95  Aligned_cols=49  Identities=16%  Similarity=0.062  Sum_probs=23.6

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTL  121 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~  121 (228)
                      ...+..+.+.++...+..+-|.-.-++...=...+..|||+.|++..+.
T Consensus       165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~  213 (531)
T COG3898         165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA  213 (531)
T ss_pred             HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence            3444455555555555555554444433333334445555555554443

>PRK10941 hypothetical protein; Provisional

Probab=95.98  E-value=0.063  Score=45.94  Aligned_cols=74  Identities=12%  Similarity=-0.111  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      -..|+=.+|.+.++++.|+++.+.++...|.+|.-+.-+|.++.++ |.+..|...++.-++.-|+++.+..++.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            4678888999999999999999999999999998888899988885 5889999999999999999999877554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.96  E-value=0.021  Score=33.43  Aligned_cols=28  Identities=29%  Similarity=0.138  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSIS  162 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~  162 (228)
                      ++.++|.+|..+|++++|+..+++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            7899999999999999999999999553

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.92  E-value=0.55  Score=41.12  Aligned_cols=111  Identities=13%  Similarity=0.044  Sum_probs=82.6

Q ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           84 DASAAVSSRVSDALELLEKGRELQAI------------GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        84 ~~~~al~~~p~~a~a~~~lG~~~~~~------------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      .+.+.++.+|.|...|..+....-..            .-.+.-+..|++|++.+|++..   .+..+-.+..+..+.++
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~---L~l~~l~~~~~~~~~~~   83 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER---LLLGYLEEGEKVWDSEK   83 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCCHHH
Confidence            45667888999999998886544332            2256778899999999999988   67777677778889999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhc
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVD--KHALLLAENQFTIATLL  197 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~--~~~~~~A~~~~~~al~l  197 (228)
                      -.+.+++++...+.++..|..+-......  .-.++..+..|.++|+.
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            99999999888888887776544332221  12467788888887765

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.89  E-value=0.014  Score=53.29  Aligned_cols=82  Identities=11%  Similarity=0.009  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h----cCC---------CchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVE-----N----YKD---------FAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-----l----~P~---------~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ...|+|+|.++++.|.|..++..|.+|++     +    .|.         .-.   ..||.|..|...|+.-.|.++|.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~e---ilYNcG~~~Lh~grPl~AfqCf~  359 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSME---ILYNCGLLYLHSGRPLLAFQCFQ  359 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchh---hHHhhhHHHHhcCCcHHHHHHHH
Confidence            34578999999999999999999999996     1    111         123   68999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHh
Q 027087          158 DVSISLKGYPEVHAALAAALYVD  180 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~  180 (228)
                      +++.....+|..|..++.+....
T Consensus       360 ~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  360 KAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH
Confidence            99988899999999998876653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.81  E-value=0.17  Score=40.46  Aligned_cols=103  Identities=14%  Similarity=0.057  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHH---
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPEVH---  170 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~~~---  170 (228)
                      -.++..+|.-|.+.||+++|++.|.++.+..-........++++-.+.+..|++......+.++-..+..  +.+..   
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4578899999999999999999999988765554333336778888888999999999999999443333  12222   


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          171 -AALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       171 -~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                       ..-|..... .++|.+|-+.|-.+   .+.+.
T Consensus       116 k~~~gL~~l~-~r~f~~AA~~fl~~---~~t~~  144 (177)
T PF10602_consen  116 KVYEGLANLA-QRDFKEAAELFLDS---LSTFT  144 (177)
T ss_pred             HHHHHHHHHH-hchHHHHHHHHHcc---CcCCC
Confidence             222333333 46888888776544   45554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.74  E-value=0.1  Score=47.99  Aligned_cols=85  Identities=12%  Similarity=-0.081  Sum_probs=49.6

Q ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 027087           84 DASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD-REEAIAEMEDVSIS  162 (228)
Q Consensus        84 ~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~~  162 (228)
                      .++++...-+.|...|.+...-..+.+.+.+--..|.+++..+|++++   .|.--|.-.+..+. .+.|...+.++++.
T Consensus        93 lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d---LWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   93 LYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD---LWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch---hHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            345555555556666666555444444466666666666666666666   56555555555555 56666666666666


Q ss_pred             cCCCHHHHH
Q 027087          163 LKGYPEVHA  171 (228)
Q Consensus       163 ~~~~p~~~~  171 (228)
                      .|+.|..+.
T Consensus       170 npdsp~Lw~  178 (568)
T KOG2396|consen  170 NPDSPKLWK  178 (568)
T ss_pred             CCCChHHHH
Confidence            666665444

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.62  E-value=0.5  Score=40.23  Aligned_cols=104  Identities=19%  Similarity=0.075  Sum_probs=79.3

Q ss_pred             hcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHcC-------CHHHHHHHHH
Q 027087           90 SSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDF-AFSEYARVGRALALYEVG-------DREEAIAEME  157 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~-~~~~~a~~~la~~~~~~g-------~~~~A~~~~~  157 (228)
                      ..+..++.+.+++|.++..    ..|+.+|...|++|.+..-.. ..   +.+++|.+|..-+       +...|+..|+
T Consensus       103 ~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~---~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~  179 (292)
T COG0790         103 AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL---AMYRLGLAYLSGLQALAVAYDDKKALYLYR  179 (292)
T ss_pred             HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH---HHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence            3345677788999999987    559999999999998764332 12   4888988887642       3347999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCC
Q 027087          158 DVSISLKGYPEVHAALAAALYVDK----HALLLAENQFTIATLLDP  199 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P  199 (228)
                      ++-.  ..++++.+.+|.++.. |    .++++|..+|.++-+...
T Consensus       180 ~aa~--~~~~~a~~~lg~~y~~-G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         180 KAAE--LGNPDAQLLLGRMYEK-GLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHH--hcCHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHHHCCC
Confidence            9832  2378899999977665 3    488999999999999876

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.60  E-value=0.07  Score=34.02  Aligned_cols=36  Identities=14%  Similarity=0.088  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087          136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      ++.+|..++++|+|++|....+.++...|.|..+..
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            678888889999999999999998888888876544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.59  E-value=0.12  Score=48.38  Aligned_cols=100  Identities=12%  Similarity=-0.015  Sum_probs=84.7

Q ss_pred             CCCchHHHHHHHHHHhcChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDAL-ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~-a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      .+....|....++++...|.... ...++++++.+-|-.-+|-..+.+++.++-..+.   .++.+|.++..+.+.++|+
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl---~~~~~g~~~l~l~~i~~a~  696 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL---TFLSLGNAYLALKNISGAL  696 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch---HHHhcchhHHHHhhhHHHH
Confidence            34566778888888888887654 4689999999999999999999999999977777   7899999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHH
Q 027087          154 AEMEDVSISLKGYPEVHAALAAAL  177 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l  177 (228)
                      +.|++++.+.+++|+....|-.+-
T Consensus       697 ~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  697 EAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHH
Confidence            999999999999997766555443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=0.48  Score=39.80  Aligned_cols=108  Identities=19%  Similarity=0.111  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCH-HHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEV-GDREEAIAEMEDVSISLKGYP-EVHAA  172 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~p-~~~~~  172 (228)
                      .|..-+++ ++.++.++|+.++++++++.-+-..   .+.-+..+|.+|..- .++++|+.+|+++-.-...+- ....+
T Consensus        76 ~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN  154 (288)
T KOG1586|consen   76 TYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN  154 (288)
T ss_pred             HHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence            34444554 4566999999999999999766432   111234677777654 899999999999944333331 12111


Q ss_pred             ---H-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          173 ---L-AAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       173 ---l-a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                         + ..-|..+.++|.+|+..|+++....-++.-..|
T Consensus       155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence               1 122444457899999999999887666555433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.26  Score=46.15  Aligned_cols=111  Identities=19%  Similarity=0.037  Sum_probs=83.2

Q ss_pred             hcChhhHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCCC
Q 027087           90 SSRVSDALELLE--KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMED-VSISLKGY  166 (228)
Q Consensus        90 ~~~p~~a~a~~~--lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~  166 (228)
                      ..++.+...+..  +...+...++...+......++..+|++..   +..|++.++...|....+...+.+ +....+.+
T Consensus        59 ~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~  135 (620)
T COG3914          59 AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCP---AVQNLAAALELDGLQFLALADISEIAEWLSPDN  135 (620)
T ss_pred             ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccch---HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcch
Confidence            456666554322  577778889999999999999999999999   899999999888887777776666 54455666


Q ss_pred             HHHHHHH------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          167 PEVHAAL------AAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       167 p~~~~~l------a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .+....+      +..+.. .++..++....+++.++.|++++.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~d~~p~~~~~  178 (620)
T COG3914         136 AEFLGHLIRFYQLGRYLKL-LGRTAEAELALERAVDLLPKYPRV  178 (620)
T ss_pred             HHHHhhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhhhhhh
Confidence            5444433      554444 357899999999999999998764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.49  E-value=0.32  Score=41.12  Aligned_cols=108  Identities=17%  Similarity=0.050  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HH-HH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PE-VH  170 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~-~~  170 (228)
                      ..|..-++++...++|++|..++.+|++-.-++..   .+.++-..+....++..+.|+...|+++....-.+  |+ +.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            34555677788899999999999999865544432   23455667777778888899999999985443322  21 22


Q ss_pred             HHH---HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          171 AAL---AAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       171 ~~l---a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..+   +.++ + ..+.++|++.|++++.+--.....+.
T Consensus       112 maleKAak~l-e-nv~Pd~AlqlYqralavve~~dr~~m  148 (308)
T KOG1585|consen  112 MALEKAAKAL-E-NVKPDDALQLYQRALAVVEEDDRDQM  148 (308)
T ss_pred             HHHHHHHHHh-h-cCCHHHHHHHHHHHHHHHhccchHHH
Confidence            222   2323 3 34779999999999888766665544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.13  Score=43.90  Aligned_cols=70  Identities=13%  Similarity=0.068  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      .-++=.++.+.++++.|...-++.+.++|+++.   -+--+|.+|.++|-+.-|+++++..++..|++|.+..
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPY---EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh---hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            345567788999999999999999999999997   8999999999999999999999998888999886543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.47  E-value=0.23  Score=44.42  Aligned_cols=122  Identities=19%  Similarity=0.090  Sum_probs=82.9

Q ss_pred             CCchHHHHHHHH-HHhcChhhHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087           76 DPLTQAEKDASA-AVSSRVSDALELLEKGRELQA---------IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        76 ~~~~~a~~~~~~-al~~~p~~a~a~~~lG~~~~~---------~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~  145 (228)
                      +..+.|...... ....+..+++.+.-.|.+|-.         ....++|+..|.++.+++|+..    .=.|++.++..
T Consensus       196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y----~GIN~AtLL~~  271 (374)
T PF13281_consen  196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY----SGINAATLLML  271 (374)
T ss_pred             CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc----chHHHHHHHHH
Confidence            335566666666 446677788999999998832         2358899999999999998765    46888888988


Q ss_pred             cCCHHHHHHHHHHHHHhc--------CCCH-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          146 VGDREEAIAEMEDVSISL--------KGYP-EVH---AALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~--------~~~p-~~~---~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      .|...+....++++...+        ..+. .-+   ..+..+..- .|++++|++++++++++.|..-
T Consensus       272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCcch
Confidence            888666655555553111        1111 112   223333333 4699999999999999987544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.43  E-value=0.33  Score=44.60  Aligned_cols=109  Identities=11%  Similarity=-0.006  Sum_probs=53.7

Q ss_pred             HHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           87 AAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY  166 (228)
Q Consensus        87 ~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  166 (228)
                      +++..|..+.-.|...+..-++.+....|...+++|+.+-|.-.+   .|+..-.+-..+|+...|...|++=   ..-.
T Consensus        98 RALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq---lWyKY~ymEE~LgNi~gaRqiferW---~~w~  171 (677)
T KOG1915|consen   98 RALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ---LWYKYIYMEEMLGNIAGARQIFERW---MEWE  171 (677)
T ss_pred             HHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH---HHHHHHHHHHHhcccHHHHHHHHHH---HcCC
Confidence            344444555555555555555555555555555555555555444   4555555555555555555555555   3333


Q ss_pred             H--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          167 P--EVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       167 p--~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      |  +++...-..-.. -+.++.|+..|++-+-.+|+..
T Consensus       172 P~eqaW~sfI~fElR-ykeieraR~IYerfV~~HP~v~  208 (677)
T KOG1915|consen  172 PDEQAWLSFIKFELR-YKEIERARSIYERFVLVHPKVS  208 (677)
T ss_pred             CcHHHHHHHHHHHHH-hhHHHHHHHHHHHHheecccHH
Confidence            3  222222221111 1345666666666666666543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.41  E-value=0.14  Score=47.20  Aligned_cols=89  Identities=17%  Similarity=0.029  Sum_probs=71.0

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCC
Q 027087          108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP----EVHAALAAALYVDKHA  183 (228)
Q Consensus       108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~  183 (228)
                      ...+.+.|.+.++...+..|+..-   -.+..|.++...|+.++|++.|++++.....-+    -..+.++.++.. .++
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~l---fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~  320 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSAL---FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHD  320 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-Hch
Confidence            456788999999999999999988   789999999999999999999999842111112    234556666666 459


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 027087          184 LLLAENQFTIATLLDPH  200 (228)
Q Consensus       184 ~~~A~~~~~~al~l~P~  200 (228)
                      |++|...|.+.++.+..
T Consensus       321 w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  321 WEEAAEYFLRLLKESKW  337 (468)
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999999986654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.20  E-value=0.19  Score=37.72  Aligned_cols=85  Identities=22%  Similarity=0.215  Sum_probs=59.7

Q ss_pred             CCchHHHHHHHHHHh----------cCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hcCCC-chhHHH
Q 027087           76 DPLTQAEKDASAAVS----------SRV--SDALELLEKGRELQAIGDFNKALQYFTLVVE-------NYKDF-AFSEYA  135 (228)
Q Consensus        76 ~~~~~a~~~~~~al~----------~~p--~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-------l~P~~-~~~~~a  135 (228)
                      ....++...++.+.+          -|.  =|+..+-.+..++..+|+|++++..-++++.       ++-+. ..|+-+
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa  102 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA  102 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence            335566666666651          122  2456678889999999999999888888774       33332 234557


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087          136 RVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      .++++.++...|+.++|++.|+.+.
T Consensus       103 Vfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen  103 VFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Confidence            8999999999999999999999983

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.18  E-value=0.14  Score=39.86  Aligned_cols=72  Identities=19%  Similarity=0.118  Sum_probs=59.3

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      +..+++.......=-+.|+.++.-..-|.++...|+|++|+..|+...+-.+..+.   +.-.++.|++.+||.+
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~---~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY---GKALLALCLNAKGDAE   95 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH---HHHHHHHHHHhcCChH
Confidence            33444555444444668999999999999999999999999999999888888776   8889999999998865

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.95  E-value=0.49  Score=43.55  Aligned_cols=119  Identities=16%  Similarity=0.005  Sum_probs=81.9

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      -+.|...+++++.+=|.--..||..-..-..+|+...|.+.|++-++..|+- +   +|...-..-.+-++.+.|...|+
T Consensus       123 vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-q---aW~sfI~fElRykeieraR~IYe  198 (677)
T KOG1915|consen  123 VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-Q---AWLSFIKFELRYKEIERARSIYE  198 (677)
T ss_pred             HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-H---HHHHHHHHHHHhhHHHHHHHHHH
Confidence            4455555666777777766777776666677888888888888888888874 3   67777777777788888888888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          158 DVSISLKGYPEVHAALAAALYV-DKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~-~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +-   .--+|++...+-.+-+. ..|+..-++..|++|++.--++..
T Consensus       199 rf---V~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~  242 (677)
T KOG1915|consen  199 RF---VLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE  242 (677)
T ss_pred             HH---heecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence            88   55556444333333222 246788888888888876655443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.91  E-value=0.056  Score=45.09  Aligned_cols=59  Identities=19%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087          105 ELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY  166 (228)
Q Consensus       105 ~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  166 (228)
                      ...+.||.+.|.+.|.+++++.|++..   .|+.+|....+.|+++.|.+.|++.++..|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~---gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAA---GWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhh---hhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            456789999999999999999999999   99999999999999999999999996666655

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.87  E-value=0.037  Score=29.62  Aligned_cols=23  Identities=39%  Similarity=0.414  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 027087          135 ARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      +.+++|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.83  E-value=0.046  Score=29.26  Aligned_cols=24  Identities=29%  Similarity=0.271  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFT  120 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~  120 (228)
                      .+++++|.++..+|++++|+..++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467788888888888888888775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.77  E-value=0.46  Score=35.03  Aligned_cols=95  Identities=13%  Similarity=0.007  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHhcCCCHHHH
Q 027087          102 KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD----R-------EEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus       102 lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~----~-------~~A~~~~~~al~~~~~~p~~~  170 (228)
                      ++..+++.|++-+|++..+..+..++++...+..+..-|.+++++..    .       -.++++|.++....|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            45678899999999999999999999887522256667777766432    1       267888888855444444445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          171 AALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       171 ~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      +.+|.-+-. ...|+++...-+++|.+
T Consensus        82 ~~la~~l~s-~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGS-VKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhh-HHHHHHHHHHHHHHhcc
Confidence            555543222 23466676666666665

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.71  E-value=0.51  Score=43.47  Aligned_cols=100  Identities=10%  Similarity=0.099  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--H-----
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--P-----  167 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p-----  167 (228)
                      .+..++-+|.-...-+-|+.|+..|..|+++--.-..++....|+|.+|...|+-+.--+.++.+   .|.+  +     
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~  442 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQR  442 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHH
Confidence            45667888998889999999999999998876544444456789999999999998888888887   6653  2     


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          168 ---EVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       168 ---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                         .+.+..|...+. ++++.||+...++.|+..
T Consensus       443 l~a~~~~v~glfaf~-qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  443 LEASILYVYGLFAFK-QNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhc
Confidence               345555665666 469999999999999876

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.67  E-value=0.25  Score=34.16  Aligned_cols=59  Identities=24%  Similarity=0.113  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM  156 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~  156 (228)
                      .....|.-++.+.+.++|+..++++++..++..+-.-++-.+..+|...|+|.+.++..
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666666666665541112222334555666666655543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.64  E-value=0.34  Score=48.33  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087          103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV----G---DREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus       103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      ..++...+.|+.|+..|++...--|+-.+.--|.+..|..+.++    |   .+++|+..|++.   ...-...+.+||.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  558 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL---HGGVGAPLEYLGK  558 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh---cCCCCCchHHHhH
Confidence            55667777888888888888777776543222667777776652    2   366777777776   3322233444444


Q ss_pred             HHH-HhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          176 ALY-VDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       176 ~l~-~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++. +..|+|+|=++.|.-+++..|+.+..-.
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISR  590 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence            332 2246778888888888888888777544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.63  E-value=0.41  Score=41.18  Aligned_cols=63  Identities=16%  Similarity=0.047  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      ...++..+...+...|+++.++..+++.+.++|-+..   +|..+-.+|++.|+...|+..|+++-
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~---~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP---AYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH---HHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            3456778889999999999999999999999999999   99999999999999999999999983

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.62  E-value=0.28  Score=45.15  Aligned_cols=120  Identities=16%  Similarity=0.089  Sum_probs=84.7

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ..++-+....+++..|.++..-...+.+....|+|+.+.+.+.-+-..--.-..   +...+-..++.+|+.++|....+
T Consensus       305 ~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~---~~~~~~r~~~~l~r~~~a~s~a~  381 (831)
T PRK15180        305 IIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS---TLRCRLRSLHGLARWREALSTAE  381 (831)
T ss_pred             HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch---HHHHHHHhhhchhhHHHHHHHHH
Confidence            344445555667778888887788899999999999999988666443333333   55566667888999999999888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      -.+-.--.+|+....-+..--. .|-++++..+|++++.++|..
T Consensus       382 ~~l~~eie~~ei~~iaa~sa~~-l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        382 MMLSNEIEDEEVLTVAAGSADA-LQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHhccccCChhheeeecccHHH-HhHHHHHHHHHHHHhccCChh
Confidence            8843333456654333322223 457899999999999999853

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.62  E-value=0.52  Score=43.47  Aligned_cols=88  Identities=8%  Similarity=-0.002  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087          114 KALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTI  193 (228)
Q Consensus       114 ~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~  193 (228)
                      .=...|++|...-+.+..   .|.+....-.+.+.+.+-...|.+++...|++|+.|..-+.-.+..+.+++.|+..|.+
T Consensus        89 rIv~lyr~at~rf~~D~~---lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr  165 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVK---LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR  165 (568)
T ss_pred             HHHHHHHHHHHhcCCCHH---HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence            345668888888888887   78777666666677999999999999999999999988888788877668999999999


Q ss_pred             HHhcCCCCCch
Q 027087          194 ATLLDPHYTDL  204 (228)
Q Consensus       194 al~l~P~~~~~  204 (228)
                      +|+.+|+.+..
T Consensus       166 gLR~npdsp~L  176 (568)
T KOG2396|consen  166 GLRFNPDSPKL  176 (568)
T ss_pred             HhhcCCCChHH
Confidence            99999998875

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.53  E-value=1.1  Score=37.04  Aligned_cols=65  Identities=20%  Similarity=0.041  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhcCC--Cc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           96 ALELLEKGRELQAIGDFN-------KALQYFTLVVENYKD--FA-FSEYARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~-------~Ai~~~~~Al~l~P~--~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      +..+..++.+|..+|+.+       .|++.|+++++....  .. +..-..+.+|.+..+.|++++|++.|.+++
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi  192 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI  192 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            555666677777777744       344444444433322  11 001145667777777777777777777773

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.49  E-value=0.13  Score=47.29  Aligned_cols=114  Identities=16%  Similarity=0.063  Sum_probs=87.2

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCch-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLV-VENYKDFAF-----SEYARVGRALALYEVGDREEAIAEMEDVSIS---  162 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A-l~l~P~~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~---  162 (228)
                      .-+.+.+.+...+.++..|+|.+|.+.+... +...|....     .+..|+|+|.+++++|.|.-++..|.++++-   
T Consensus       236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~  315 (696)
T KOG2471|consen  236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS  315 (696)
T ss_pred             cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence            3366788899999999999999999998765 444454221     1335899999999999999999999999751   


Q ss_pred             -cCC--------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          163 -LKG--------------YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       163 -~~~--------------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                       +..              .-+..++.|..+... |+.-+|-+.|.+++...-.++..+.
T Consensus       316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~-grPl~AfqCf~~av~vfh~nPrlWL  373 (696)
T KOG2471|consen  316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS-GRPLLAFQCFQKAVHVFHRNPRLWL  373 (696)
T ss_pred             HHhccCCCCcceehhcccchhhHHhhhHHHHhc-CCcHHHHHHHHHHHHHHhcCcHHHH
Confidence             111              117788999988885 5889999999999988766666543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.44  E-value=2  Score=37.25  Aligned_cols=112  Identities=20%  Similarity=0.140  Sum_probs=84.7

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCC
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD----FAFSEYARVGRALALYEVGDREEAIAEMEDVSI-SLKGY  166 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~----~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~  166 (228)
                      .......+...+.+..+.|+++.|...+.++...++.    .+.   ..+..+..+...|+.++|+..++..+. .....
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~---v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~  218 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPR---VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN  218 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcc---hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            5566778899999999999999999999999886632    345   678889999999999999999999866 11111


Q ss_pred             --------------------------H-------HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          167 --------------------------P-------EVHAALAAALYVD-----KHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       167 --------------------------p-------~~~~~la~~l~~~-----~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                                                .       .++..+|......     .+..+++...|+++++++|.....++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~  296 (352)
T PF02259_consen  219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH  296 (352)
T ss_pred             cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence                                      0       2333344433332     26789999999999999998887544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.39  E-value=1  Score=42.49  Aligned_cols=97  Identities=19%  Similarity=-0.020  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCC
Q 027087           95 DALELLEKGRELQAIG-----DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG---DREEAIAEMEDVSISLKGY  166 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g-----~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~  166 (228)
                      ++.+.+.+|.+|.+..     +++.|+..|.++.++.  +++   +.+++|.++..-.   ++..|.++|..+.  ...+
T Consensus       287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa--~~G~  359 (552)
T KOG1550|consen  287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPD---AQYLLGVLYETGTKERDYRRAFEYYSLAA--KAGH  359 (552)
T ss_pred             CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--Cch---HHHHHHHHHHcCCccccHHHHHHHHHHHH--HcCC
Confidence            3446778889888743     7889999999987654  455   8899999998766   5789999999992  3457


Q ss_pred             HHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCC
Q 027087          167 PEVHAALAAALYVDK----HALLLAENQFTIATLLDP  199 (228)
Q Consensus       167 p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P  199 (228)
                      .++.+.++.++.. |    .+.+.|..+|+++.+.+.
T Consensus       360 ~~A~~~la~~y~~-G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  360 ILAIYRLALCYEL-GLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             hHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHHHHccC
Confidence            8899999997766 5    578999999999999983

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.33  E-value=0.19  Score=29.32  Aligned_cols=31  Identities=13%  Similarity=0.294  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCC
Q 027087           98 ELLEKGRELQAIGDFNKALQY--FTLVVENYKD  128 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~--~~~Al~l~P~  128 (228)
                      .++.+|-.+..+|++++|+..  |.-+..+++.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            355566666666666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.31  E-value=0.98  Score=42.40  Aligned_cols=93  Identities=22%  Similarity=0.008  Sum_probs=74.5

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCCCchhHHHHHHH------HHHHHHcCCHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTL-VVENYKDFAFSEYARVGR------ALALYEVGDRE  150 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~-Al~l~P~~~~~~~a~~~l------a~~~~~~g~~~  150 (228)
                      ...+....+..+..||+++.++.++|.++...|....++..+.. +....|++.+   ....+      +..+..+|+..
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~  159 (620)
T COG3914          83 STLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE---FLGHLIRFYQLGRYLKLLGRTA  159 (620)
T ss_pred             chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH---HHhhHHHHHHHHHHHHHhccHH
Confidence            33455555667799999999999999999988888877777665 8999999987   55555      88888899999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHH
Q 027087          151 EAIAEMEDVSISLKGYPEVHAAL  173 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~l  173 (228)
                      ++...+++++..+|.+++....+
T Consensus       160 ~~~~~l~~~~d~~p~~~~~~~~~  182 (620)
T COG3914         160 EAELALERAVDLLPKYPRVLGAL  182 (620)
T ss_pred             HHHHHHHHHHHhhhhhhhhHhHH
Confidence            99999999988888887554433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.25  E-value=0.77  Score=37.91  Aligned_cols=96  Identities=10%  Similarity=-0.026  Sum_probs=63.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhcCC--C----HH
Q 027087          106 LQAIGDFNKALQYFTLVVEN----YKDFAFSEYARVGRALALYEVGDRE-------EAIAEMEDVSISLKG--Y----PE  168 (228)
Q Consensus       106 ~~~~g~~~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~~g~~~-------~A~~~~~~al~~~~~--~----p~  168 (228)
                      +.....+++|++.|.-|+-.    ..++...++.+..+|++|..+|+.+       .|...|++++.....  .    ..
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            44556788888887776533    2333344557899999999999965       555555555332221  1    14


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          169 VHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       169 ~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      ..+.+|.+... .|++++|..+|.+++...-...
T Consensus       167 l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  167 LLYLIGELNRR-LGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHH-hCCHHHHHHHHHHHHcCCCCCC
Confidence            45566776666 5689999999999997644433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.11  E-value=0.099  Score=30.93  Aligned_cols=30  Identities=13%  Similarity=0.022  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENY  126 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~  126 (228)
                      +++..+|.+-...++|++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356667777777777777777777776653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.96  E-value=0.3  Score=45.37  Aligned_cols=83  Identities=20%  Similarity=0.103  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQAI---GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~---g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      ..++..+.++++.-|.....+.|++.++++.   |+.-.|+..-..|++++|....   +++.++.++.+++++.+|+.+
T Consensus       391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k---ah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK---AHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH---HHHHHHHHHHHHhhHHHhhhh
Confidence            4456667777888888888999998888764   6778888999999999999999   999999999999999999999


Q ss_pred             HHHHHHhcCCCH
Q 027087          156 MEDVSISLKGYP  167 (228)
Q Consensus       156 ~~~al~~~~~~p  167 (228)
                      ...+   .-.+|
T Consensus       468 ~~al---q~~~P  476 (758)
T KOG1310|consen  468 HWAL---QMSFP  476 (758)
T ss_pred             HHHH---hhcCc
Confidence            9988   44455

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.87  E-value=0.51  Score=38.42  Aligned_cols=64  Identities=25%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      +.+-.+++.++..+|++|+|+..++...  ++++..  ...-.+|.++...|+-++|++.|++++...
T Consensus       126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         126 ALAALRLARVQLQQKKADAALKTLDTIK--EESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            3456788999999999999999998753  233221  135678999999999999999999996654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.86  E-value=3.7  Score=35.04  Aligned_cols=124  Identities=17%  Similarity=-0.017  Sum_probs=79.6

Q ss_pred             hCCCchHHHHHHHHHH----hcChhh----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----cC---CCchh----H
Q 027087           74 TYDPLTQAEKDASAAV----SSRVSD----ALELLEKGRELQAIG-DFNKALQYFTLVVEN----YK---DFAFS----E  133 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al----~~~p~~----a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l----~P---~~~~~----~  133 (228)
                      +.+..+-|..++.++-    ..+|+.    +..+|+.|......+ ++++|+..++++.++    ..   ..++.    .
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            3455566666665542    445655    456899999999999 999999999999888    22   22220    1


Q ss_pred             HHHHHHHHHHHHcCCHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          134 YARVGRALALYEVGDREE---AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       134 ~a~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      -.+..++.+|.+.+.++.   |...++.+-...++.|......-.++.. .++.+++.+.+.+++.--
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence            136678888988888764   4444444533345556555322222333 456788888888888753

It is also involved in sporulation [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.84  E-value=0.3  Score=43.52  Aligned_cols=101  Identities=19%  Similarity=0.048  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYEVGDREEAIAEMEDVSISLKGYP------  167 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p------  167 (228)
                      .+..-+|+++.-++.|+++++.|++|+...-++.+.   ...+..+|..+-++.|+++|.-...++..+....-      
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            345667889999999999999999998886554431   01467889999999999999999888866544221      


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          168 ----EVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       168 ----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                          .+.+.++.++.. .|+...|.+.-+++-++.
T Consensus       203 kyr~~~lyhmaValR~-~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRL-LGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHH
Confidence                344556666655 457788888888876654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.72  E-value=3.1  Score=33.58  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=84.0

Q ss_pred             CCchHHHHHHHHHHhcChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH--HHHHHHHHHHHHcCCHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSD--ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE--YARVGRALALYEVGDREE  151 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~--a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~--~a~~~la~~~~~~g~~~~  151 (228)
                      +..+++..-+...-.-...+  ..+.+..|.+....|+-.+|+..|+.+-.-.|- +...  -++..-+..+...|-|++
T Consensus        72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~gsy~d  150 (221)
T COG4649          72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNGSYDD  150 (221)
T ss_pred             CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccccHHH
Confidence            33444554444444434443  345678899999999999999999998665443 2210  157778889999999999


Q ss_pred             HHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087          152 AIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTIATL  196 (228)
Q Consensus       152 A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~  196 (228)
                      -....+.+.  .+.+|   .+...||.+-+. .|++..|..+|.....
T Consensus       151 V~srvepLa--~d~n~mR~sArEALglAa~k-agd~a~A~~~F~qia~  195 (221)
T COG4649         151 VSSRVEPLA--GDGNPMRHSAREALGLAAYK-AGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHhhhcc--CCCChhHHHHHHHHhHHHHh-ccchHHHHHHHHHHHc
Confidence            988888761  33455   567788888888 5699999999998876

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.70  E-value=0.37  Score=40.56  Aligned_cols=62  Identities=18%  Similarity=0.038  Sum_probs=35.2

Q ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087           81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~  145 (228)
                      |..+|..++.+.|++...|+++|.+....|+.-+|+=.|-|++...--++.   |..|+...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~---A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPS---ARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HH---HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHH
Confidence            345566666666666666666666666666666666666666544433444   56666665555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.61  E-value=0.73  Score=43.46  Aligned_cols=112  Identities=19%  Similarity=0.164  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-----hcCCCchhHHHHHHHHHHHHHcC--
Q 027087           80 QAEKDASAAVSSRVSDALELLEKGRELQA-----IGDFNKALQYFTLVVE-----NYKDFAFSEYARVGRALALYEVG--  147 (228)
Q Consensus        80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~-----~g~~~~Ai~~~~~Al~-----l~P~~~~~~~a~~~la~~~~~~g--  147 (228)
                      .+..+++.+.  +-.+..+.+.+|.++..     .+|.+.|+.+|+.+.+     ..-.++.   +.+.+|.+|.+..  
T Consensus       230 ~a~~~~~~~a--~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  230 EAFKYYREAA--KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGV  304 (552)
T ss_pred             HHHHHHHHHH--hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCC
Confidence            3444444333  34567778888888864     4899999999999977     1122555   7899999999843  


Q ss_pred             ---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcC
Q 027087          148 ---DREEAIAEMEDVSISLKGYPEVHAALAAALYVDK--HALLLAENQFTIATLLD  198 (228)
Q Consensus       148 ---~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~--~~~~~A~~~~~~al~l~  198 (228)
                         +++.|+..|.++.  .-.+|++.+.+|.++..-.  .++..|.++|..|....
T Consensus       305 ~~~d~~~A~~~~~~aA--~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G  358 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAA--ELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG  358 (552)
T ss_pred             ccccHHHHHHHHHHHH--hcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence               7888999999992  2356889999999877733  35679999999887653

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=1.4  Score=40.71  Aligned_cols=118  Identities=15%  Similarity=-0.027  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhcChh---hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc---CCCchh-HHHHHHHHHHHHHcC-CHHH
Q 027087           81 AEKDASAAVSSRVS---DALELLEKGRELQ-AIGDFNKALQYFTLVVENY---KDFAFS-EYARVGRALALYEVG-DREE  151 (228)
Q Consensus        81 a~~~~~~al~~~p~---~a~a~~~lG~~~~-~~g~~~~Ai~~~~~Al~l~---P~~~~~-~~a~~~la~~~~~~g-~~~~  151 (228)
                      .+...+..+...|.   .+..+..+|.+++ ..++++.|...++++..+.   |++.++ -.+.-.++.+|.+.. .+..
T Consensus        28 ~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~  107 (629)
T KOG2300|consen   28 CIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPP  107 (629)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            34444444444443   2455677776665 5788888888888887665   555321 013455677777666 6788


Q ss_pred             HHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          152 AIAEMEDVSISLKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       152 A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +...+++++......|    ...+.++....- ..++..|.+.    |..+-.+++
T Consensus       108 ~KalLrkaielsq~~p~wsckllfQLaql~~i-dkD~~sA~el----Lavga~sAd  158 (629)
T KOG2300|consen  108 AKALLRKAIELSQSVPYWSCKLLFQLAQLHII-DKDFPSALEL----LAVGAESAD  158 (629)
T ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh-hccchhHHHH----Hhccccccc
Confidence            8888888877777777    445556665555 4577777774    555544443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.31  E-value=1.3  Score=42.18  Aligned_cols=98  Identities=13%  Similarity=0.030  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP-----EVH  170 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-----~~~  170 (228)
                      ...|..........|-++.-...|++++++.=-.++   ...|.|+.+....-++++.+.|++.   ++..+     +.|
T Consensus       477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPq---ii~NyAmfLEeh~yfeesFk~YErg---I~LFk~p~v~diW  550 (835)
T KOG2047|consen  477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ---IIINYAMFLEEHKYFEESFKAYERG---ISLFKWPNVYDIW  550 (835)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhhHHHHHHHHHHHcC---CccCCCccHHHHH
Confidence            345666777778889999999999999999988898   8999999999999999999999999   55442     666


Q ss_pred             HHHH-HHHHHh-cCCHHHHHHHHHHHHhcCC
Q 027087          171 AALA-AALYVD-KHALLLAENQFTIATLLDP  199 (228)
Q Consensus       171 ~~la-~~l~~~-~~~~~~A~~~~~~al~l~P  199 (228)
                      ...- ...... |...+.|+..|++||+.-|
T Consensus       551 ~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  551 NTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            5433 222222 4578999999999999876

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.24  E-value=0.56  Score=42.84  Aligned_cols=70  Identities=19%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHH
Q 027087          103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP--EVHAALAAALYV  179 (228)
Q Consensus       103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p--~~~~~la~~l~~  179 (228)
                      +.-++.+|+|.++.-.-.-..+++| ++.   ++..+|.+++...+|++|-.++...   -+++-  +.+...+.+++.
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~---~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCq  540 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQ---AYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQ  540 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHH---HHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHH
Confidence            5556789999999999999999999 688   8999999999999999999999987   55432  444444444443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.15  E-value=2.3  Score=32.70  Aligned_cols=74  Identities=7%  Similarity=0.021  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           96 ALELLEKGRELQAI---GDFNKALQYFTLVVE-NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        96 a~a~~~lG~~~~~~---g~~~~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      ....|+++.++.+.   .|..+.|..++..++ -+|+... .| .|-++..+++.|+|+.++.+.+..+...|+++++..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rR-e~-lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRR-EC-LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccch-hh-hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            45578888888654   556789999999996 5555443 23 788999999999999999999999888888876644

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.08  E-value=2.2  Score=42.77  Aligned_cols=121  Identities=21%  Similarity=0.149  Sum_probs=88.2

Q ss_pred             CchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc
Q 027087           77 PLTQAEKDASAAVSSRVSD---ALELLEKGRELQAI----G---DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV  146 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~----g---~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~  146 (228)
                      -.+.|+.++++...--|+-   -++.|..|..+..+    |   .+++|+..|++.-. .|.-+.   -|...|.+|.++
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~  565 (932)
T PRK13184        490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPL---EYLGKALVYQRL  565 (932)
T ss_pred             HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCch---HHHhHHHHHHHh
Confidence            3677888888777666543   56789999888532    3   58888888888633 466666   689999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          147 GDREEAIAEMEDVSISLKGYPEVHAA-------LAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       147 g~~~~A~~~~~~al~~~~~~p~~~~~-------la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      |+|+|=+++|.-+++..+++|+.-..       +-.+++.   +-..|....--++.+.|.....
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  627 (932)
T PRK13184        566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK---HRREALVFMLLALWIAPEKISS  627 (932)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCcccccc
Confidence            99999999999999999999843322       2333333   2266667777788888876554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.07  E-value=4.7  Score=35.29  Aligned_cols=115  Identities=10%  Similarity=-0.120  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH---HHHcCCHHHHHHHH
Q 027087           80 QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALA---LYEVGDREEAIAEM  156 (228)
Q Consensus        80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~---~~~~g~~~~A~~~~  156 (228)
                      -.+..+.++++.+|++...+..+=....+..+-++-.+.+++++..+|++..   .|..+-..   .+..-.+++....|
T Consensus        49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~---LW~~yL~~~q~~~~~f~v~~~~~~y  125 (321)
T PF08424_consen   49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE---LWREYLDFRQSNFASFTVSDVRDVY  125 (321)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHhccCcHHHHHHHH
Confidence            3455667888999999998888878888888999999999999999999887   44333222   12233567888888


Q ss_pred             HHHHHhcCCCH------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          157 EDVSISLKGYP------------------EVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       157 ~~al~~~~~~p------------------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      .+++..+..-.                  .....+...+.+ .|..+.|...|+..++++
T Consensus       126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHH
Confidence            87766543211                  111222333333 578999999999999986

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.01  E-value=0.66  Score=41.38  Aligned_cols=101  Identities=17%  Similarity=0.077  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc--hh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CC-
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFA--FS-----EYARVGRALALYEVGDREEAIAEMEDVSISLK--GY-  166 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~--~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~-  166 (228)
                      .++..+|..+.+.+|+++|+.+..+|.++--+..  +|     .-+++.++.++..+|+.-+|.++.+++..+.-  .| 
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            4577889999999999999999999988865432  11     12578899999999999999999999844321  12 


Q ss_pred             H---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          167 P---EVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       167 p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      +   ....-++.+|.. .|+.+.|-..|+.|....
T Consensus       243 a~~arc~~~~aDIyR~-~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRS-RGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHHh-cccHhHHHHHHHHHHHHH
Confidence            1   233445676766 457788888888886653

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.64  E-value=5.7  Score=33.67  Aligned_cols=117  Identities=17%  Similarity=-0.008  Sum_probs=79.9

Q ss_pred             chHHHHHHHHHHhcChhh-HHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----
Q 027087           78 LTQAEKDASAAVSSRVSD-ALELLEKGRELQAI-----G--DFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----  145 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~-a~a~~~lG~~~~~~-----g--~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----  145 (228)
                      ...+...+..+.+..... ..+.+++|..+..-     -  +...|+..|.++-...  +..   +.+++|.+|..    
T Consensus       129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~---a~~~lg~~y~~G~Gv  203 (292)
T COG0790         129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD---AQLLLGRMYEKGLGV  203 (292)
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH---HHHHHHHHHHcCCCC
Confidence            345555556555543333 45578888877654     2  3348999999987766  666   89999988865    


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-C-------------CHHHHHHHHHHHHhcCCCCC
Q 027087          146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK-H-------------ALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~-~-------------~~~~A~~~~~~al~l~P~~~  202 (228)
                      ..++++|..+|.++....  +....+.++ +++..+ +             +...|..+++.+....+...
T Consensus       204 ~~d~~~A~~wy~~Aa~~g--~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         204 PRDLKKAFRWYKKAAEQG--DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             CcCHHHHHHHHHHHHHCC--CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence            348899999999994332  277888888 555533 1             66778888887777655443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.46  E-value=6.5  Score=33.93  Aligned_cols=130  Identities=15%  Similarity=0.011  Sum_probs=88.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-C-----------------
Q 027087           72 AATYDPLTQAEKDASAAVSSR----VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD-F-----------------  129 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~----p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~-----------------  129 (228)
                      +.+.+-.+.|......+...+    ...+...+..+..+...|+..+|+..++..+..... .                 
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL  235 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence            445555666666666555433    125778888999999999999999999998882111 0                 


Q ss_pred             -------------chhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---------
Q 027087          130 -------------AFSEYARVGRALALYEV------GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK---------  181 (228)
Q Consensus       130 -------------~~~~~a~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~---------  181 (228)
                                   ...+.++..+|......      ++.+++++.|++++...+....+++..|..+...-         
T Consensus       236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~  315 (352)
T PF02259_consen  236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEE  315 (352)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence                         01123456666666667      88899999999997777777777777776544431         


Q ss_pred             -------CCHHHHHHHHHHHHhcCCCC
Q 027087          182 -------HALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       182 -------~~~~~A~~~~~~al~l~P~~  201 (228)
                             .-...|+..|-+++...+++
T Consensus       316 ~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  316 SSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence                   11244788888888888773

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.30  E-value=1.2  Score=36.36  Aligned_cols=55  Identities=15%  Similarity=-0.050  Sum_probs=33.9

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHHHHcCCHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF----AFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~----~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ++++..+.+|..|. ..|.++++..|-+++++...+    ++   .+..++.+++++|+++.|
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~e---il~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPE---ILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHhcchhhh
Confidence            45666666665444 566667777777776665443    34   566666666666666665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.91  E-value=5.1  Score=36.28  Aligned_cols=116  Identities=15%  Similarity=0.045  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 027087           80 QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA-IAEMED  158 (228)
Q Consensus        80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A-~~~~~~  158 (228)
                      .+..+...+++++|+..-+-..-+..+++.|+..++-..++.+.+.+|.-.      ..+..++.+.|+.... ++-.++
T Consensus       247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar~gdta~dRlkRa~~  320 (531)
T COG3898         247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------IALLYVRARSGDTALDRLKRAKK  320 (531)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------HHHHHHHhcCCCcHHHHHHHHHH
Confidence            344455666677777766666667777777777777777777777666522      1222334444443211 111122


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      ....-+++.+.....+..-+. +|++..|+..-+.+.+..|...
T Consensus       321 L~slk~nnaes~~~va~aAld-a~e~~~ARa~Aeaa~r~~pres  363 (531)
T COG3898         321 LESLKPNNAESSLAVAEAALD-AGEFSAARAKAEAAAREAPRES  363 (531)
T ss_pred             HHhcCccchHHHHHHHHHHHh-ccchHHHHHHHHHHhhhCchhh
Confidence            211123344555444444444 4455666666666666555443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.90  E-value=5  Score=35.81  Aligned_cols=109  Identities=11%  Similarity=-0.075  Sum_probs=77.5

Q ss_pred             HHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hcCCC---------------------chhHHHHHHHH
Q 027087           87 AAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE-----NYKDF---------------------AFSEYARVGRA  140 (228)
Q Consensus        87 ~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-----l~P~~---------------------~~~~~a~~~la  140 (228)
                      ..++.+|-+.+.+..++.++.++||++.|-+..++|+-     ..|.+                     ..---+.+...
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            34588999999999999999999999999999999962     22322                     11012456677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087          141 LALYEVGDREEAIAEMEDVSISLKG-YP-EVHAALAAALYVDKHALLLAENQFTIATL  196 (228)
Q Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~~~-~p-~~~~~la~~l~~~~~~~~~A~~~~~~al~  196 (228)
                      ..+.+.|-+.-|.+..+-.+..+|. || .++..+-. +.-..++|+--++.++....
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~-~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDY-YALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHH-HHHhcCCHHHHHHHHHhHhh
Confidence            7888899999999999999888887 88 33333333 22224566666665555433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.85  E-value=2.5  Score=35.83  Aligned_cols=92  Identities=12%  Similarity=0.099  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP-----  167 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-----  167 (228)
                      ++-..|.++....++.++...|++|..+.     |+-..   .-...+-=..+.-+.++|+..|++++.....+-     
T Consensus        73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA---maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma  149 (308)
T KOG1585|consen   73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA---MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA  149 (308)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH---HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            34445566667777888888888877664     33222   233333344556677777777777766554432     


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087          168 -EVHAALAAALYVDKHALLLAENQFTI  193 (228)
Q Consensus       168 -~~~~~la~~l~~~~~~~~~A~~~~~~  193 (228)
                       +..-..+.++.. ++.+++|-..+.+
T Consensus       150 ~el~gk~sr~lVr-l~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  150 FELYGKCSRVLVR-LEKFTEAATAFLK  175 (308)
T ss_pred             HHHHHHhhhHhhh-hHHhhHHHHHHHH
Confidence             222223444444 3456666555544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.46  E-value=4.1  Score=34.74  Aligned_cols=100  Identities=16%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhc----CCCch-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC-------CH-----
Q 027087          106 LQAIGDFNKALQYFTLVVENY----KDFAF-SEYARVGRALALYEVG-DREEAIAEMEDVSISLKG-------YP-----  167 (228)
Q Consensus       106 ~~~~g~~~~Ai~~~~~Al~l~----P~~~~-~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-------~p-----  167 (228)
                      ..++||++.|..+|.|+-.+.    |+... -+...||.|...+..+ ++++|...++++...+..       .+     
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            357899999999999996655    33211 1235789999999999 999999999999776422       22     


Q ss_pred             --HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCchh
Q 027087          168 --EVHAALAAALYVDK--HALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       168 --~~~~~la~~l~~~~--~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                        ..+..++.++...+  ...++|....+.+-.-.|+.+...
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence              23445566665532  233445555555555567766654

It is also involved in sporulation [].

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=1.4  Score=37.71  Aligned_cols=116  Identities=14%  Similarity=0.066  Sum_probs=85.9

Q ss_pred             HHHHhcChhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087           86 SAAVSSRVSDALELLEKGRELQAIGDFN-KALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK  164 (228)
Q Consensus        86 ~~al~~~p~~a~a~~~lG~~~~~~g~~~-~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~  164 (228)
                      ...++.+|+|..+|..+-.+....|++. .-++....++..+..+.-   +|..+-++...-+.+++=+....+.+..+-
T Consensus       102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH---aWshRqW~~r~F~~~~~EL~y~~~Lle~Di  178 (318)
T KOG0530|consen  102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH---AWSHRQWVLRFFKDYEDELAYADELLEEDI  178 (318)
T ss_pred             HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh---hhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence            3445788999999999989999999888 888888999999988888   899999999999999999999999866655


Q ss_pred             CCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCCch
Q 027087          165 GYPEVHAALAAALYVDKH-----ALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       165 ~~p~~~~~la~~l~~~~~-----~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .+-.++..+-.++....|     ..+.=..+....|.+.|++..+
T Consensus       179 ~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSa  223 (318)
T KOG0530|consen  179 RNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESA  223 (318)
T ss_pred             hccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccH
Confidence            554454433221111111     2244455666788899988775

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.43  E-value=0.77  Score=26.69  Aligned_cols=20  Identities=35%  Similarity=0.439  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHH
Q 027087          136 RVGRALALYEVGDREEAIAE  155 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~  155 (228)
                      ++.+|..++.+|++++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            55556666666666666666

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.16  E-value=2.3  Score=40.54  Aligned_cols=100  Identities=7%  Similarity=0.118  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      .+.|-+.-+++.++|..+++.|...+..-|.+...   .....+++.||..+.+.|.|.+.++++-+..|.++--.....
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            45666778899999999999999999887764320   125778999999999999999999999555566663333333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          175 AALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      .+....+ .-++|..........-
T Consensus       436 ~~~~~E~-~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  436 QSFLAED-KSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHhc-chHHHHHHHHHHHhhh
Confidence            3333323 5688888877766653

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.13  E-value=3.1  Score=28.77  Aligned_cols=62  Identities=10%  Similarity=0.040  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhc
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA---AALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la---~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      .....|+-++..++.++|+..+++++......++-...+|   .++... |+|.+.+++--+-+++
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~-Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEW-GKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            4677888899999999999999999998888777666655   456564 5788887766554444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.01  E-value=0.77  Score=38.59  Aligned_cols=62  Identities=13%  Similarity=0.034  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          115 ALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       115 Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      |+.+|.+|+.+.|++..   .++.+|.+....|+.=+|+-+|-+++.--..++.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~---p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGN---PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSH---HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC---cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999999   999999999999999999999999965444456788888886665

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.95  E-value=0.92  Score=27.69  Aligned_cols=25  Identities=36%  Similarity=0.392  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087          136 RVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      .+++|.+|.++|+++.|.+.+++++
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHH
Confidence            3567777888888888888887774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=90.81  E-value=1.3  Score=39.11  Aligned_cols=96  Identities=19%  Similarity=0.171  Sum_probs=73.0

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcCCHHH
Q 027087          109 IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS--LKGYPEVHAALAAALYVDKHALLL  186 (228)
Q Consensus       109 ~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~p~~~~~la~~l~~~~~~~~~  186 (228)
                      .-||..=...|+-...+.|+-.    .-.|++.+..+..-.+.++...+.+...  +..+--.+...+..+.. .|+.++
T Consensus       309 dtDW~~I~aLYdaL~~~apSPv----V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~e  383 (415)
T COG4941         309 DTDWPAIDALYDALEQAAPSPV----VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEE  383 (415)
T ss_pred             CCChHHHHHHHHHHHHhCCCCe----EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHH
Confidence            3466666667777777777754    5789999998888888899888888443  23333456667777777 458899


Q ss_pred             HHHHHHHHHhcCCCCCchhhhhh
Q 027087          187 AENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       187 A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      |...|++++.+.++..+..|+..
T Consensus       384 Ar~aydrAi~La~~~aer~~l~~  406 (415)
T COG4941         384 ARAAYDRAIALARNAAERAFLRQ  406 (415)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHH
Confidence            99999999999999998887655

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.63  E-value=1.1  Score=38.31  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF  131 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~  131 (228)
                      .-...+.+.....+.+..+|+++..+-.+|.+|.+.|-+..|+..++..++.-|+.+.
T Consensus       193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            3355666777777888999999999999999999999999999999999999999987

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.73  E-value=4.2  Score=37.08  Aligned_cols=91  Identities=13%  Similarity=-0.008  Sum_probs=55.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhc--------CCCchh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087          103 GRELQAIGDFNKALQYFTLVVENY--------KDFAFS-------EYARVGRALALYEVGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus       103 G~~~~~~g~~~~Ai~~~~~Al~l~--------P~~~~~-------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      +...+++|+|..|+.-|..++++-        |..+.+       ....-.+..||..+++.+-|+.+..+.+...|.++
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            444555666666666666665552        222221       12244677788888888888888888866666666


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087          168 EVHAALAAALYVDKHALLLAENQFTIA  194 (228)
Q Consensus       168 ~~~~~la~~l~~~~~~~~~A~~~~~~a  194 (228)
                      -.|...+.++.. .++|.+|-+.+.-+
T Consensus       263 rnHLrqAavfR~-LeRy~eAarSamia  288 (569)
T PF15015_consen  263 RNHLRQAAVFRR-LERYSEAARSAMIA  288 (569)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            666666666555 34677776655444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.47  E-value=1.4  Score=43.35  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL  177 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l  177 (228)
                      .|-..|..+...|+.|.|+..|..|-           -|+.+-.++.-+|+.++|....++.     .|-.+-+.++..|
T Consensus       914 L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~Y  977 (1416)
T KOG3617|consen  914 LYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMY  977 (1416)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHh
Confidence            34455888889999999999998863           2555555666666666666655544     2333445556655


Q ss_pred             HHhcCCHHHHHHHHHHH
Q 027087          178 YVDKHALLLAENQFTIA  194 (228)
Q Consensus       178 ~~~~~~~~~A~~~~~~a  194 (228)
                      -. .|++.+|...|.+|
T Consensus       978 En-~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  978 EN-DGDVVKAVKFFTRA  993 (1416)
T ss_pred             hh-hHHHHHHHHHHHHH
Confidence            44 34666666666654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.46  E-value=7.4  Score=36.73  Aligned_cols=109  Identities=16%  Similarity=0.069  Sum_probs=81.2

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhcCCCH-
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA---EMEDVSISLKGYP-  167 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~---~~~~al~~~~~~p-  167 (228)
                      -++.+..+..-+..-...|+++.|...|++..+--|+...   +-.....+..++|+.+.+..   .+... .....++ 
T Consensus       362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~---~~l~~~~~e~r~~~~~~~~~~~~l~s~~-~~~~~~~~  437 (577)
T KOG1258|consen  362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVE---VVLRKINWERRKGNLEDANYKNELYSSI-YEGKENNG  437 (577)
T ss_pred             CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhh---hHHHHHhHHHHhcchhhhhHHHHHHHHh-cccccCcc
Confidence            3445556666677777899999999999999998899998   77888888999999999883   33333 2222333 


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          168 ---EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       168 ---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                         ......+...+...++.+.|...+.+++++.|++...
T Consensus       438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~  477 (577)
T KOG1258|consen  438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL  477 (577)
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence               2333445555555678899999999999999998764

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=89.14  E-value=8.1  Score=36.32  Aligned_cols=82  Identities=11%  Similarity=-0.030  Sum_probs=69.0

Q ss_pred             HHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087           86 SAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG  165 (228)
Q Consensus        86 ~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~  165 (228)
                      +.-++.||.|.+.|+.+-.-+..+ .+++....|++.+..-|..+.   +|.......+..++|+.-.+.|.+.|-.. .
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r---~W~~yi~~El~skdfe~VEkLF~RCLvkv-L   84 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPR---AWKLYIERELASKDFESVEKLFSRCLVKV-L   84 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h
Confidence            567889999999999997766555 999999999999999999999   89999999999999999999999994432 2


Q ss_pred             CHHHHHH
Q 027087          166 YPEVHAA  172 (228)
Q Consensus       166 ~p~~~~~  172 (228)
                      +-+.|..
T Consensus        85 nlDLW~l   91 (656)
T KOG1914|consen   85 NLDLWKL   91 (656)
T ss_pred             hHhHHHH
Confidence            3455543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=88.73  E-value=0.87  Score=39.83  Aligned_cols=83  Identities=10%  Similarity=-0.015  Sum_probs=69.4

Q ss_pred             HHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           88 AVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG-RALALYEVGDREEAIAEMEDVSISLKGY  166 (228)
Q Consensus        88 al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~  166 (228)
                      .-..-|+|+..|.....-..+.|-|.+--..|.+++..+|.+.+   .|.- -+.-+...++++.+...+.++++..+.+
T Consensus        99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd---lWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD---LWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce---eeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            33556888888888888778889999999999999999999998   6655 5667788899999999999999999999


Q ss_pred             HHHHHHH
Q 027087          167 PEVHAAL  173 (228)
Q Consensus       167 p~~~~~l  173 (228)
                      |..|+..
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            9666543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.51  E-value=5.1  Score=37.39  Aligned_cols=62  Identities=29%  Similarity=0.343  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVEN----YKDFAFSEYARVGRALALYEVGD-REEAIAEMEDV  159 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~~g~-~~~A~~~~~~a  159 (228)
                      .++-+|.++.++|+...|..+|..+++.    .-+..-+++|+|.+|..+..+|. ..++.+.+.+|
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kA  517 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKA  517 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence            4567788888888888888888877632    22223345688888888888888 88888888888

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.41  E-value=15  Score=31.52  Aligned_cols=121  Identities=12%  Similarity=-0.034  Sum_probs=93.3

Q ss_pred             CchHHHHHHHHHHhcChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH-HHHH
Q 027087           77 PLTQAEKDASAAVSSRVSDALELLEKGRELQ-AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE-EAIA  154 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~-~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~-~A~~  154 (228)
                      ...-|......++.++|.+.-+|.-+=.++. ...+..+-++.++++++-+|.+.+   .|..+-.+....|+.. .=++
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ---vWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ---VWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh---HHHHHHHHHHHhcCcccchHH
Confidence            3455666667788999999888766656655 456788889999999999999999   8999999999999988 8888


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      ..+.++....++=.++..+--++..-+ .++.=..+-.+.|+.|-.+
T Consensus       135 f~~~~l~~DaKNYHaWshRqW~~r~F~-~~~~EL~y~~~Lle~Di~N  180 (318)
T KOG0530|consen  135 FTKLMLDDDAKNYHAWSHRQWVLRFFK-DYEDELAYADELLEEDIRN  180 (318)
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHh-hHHHHHHHHHHHHHHhhhc
Confidence            888986655555566666666665544 5788888888888876543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.16  E-value=12  Score=33.47  Aligned_cols=104  Identities=17%  Similarity=0.067  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKD-FAFSEYARVGRALALYEVGDREEAIAEMEDVSIS-----LKGYPEVH  170 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~p~~~  170 (228)
                      .+.+.....+.++|-+.-|.+..+-.+.+||+ |+-  .+++.+-..-.+.++|+=-+..++.....     ...-|+..
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a  181 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA  181 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH
Confidence            45677788899999999999999999999999 665  35666666777889998888888776331     11235667


Q ss_pred             HHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCCC
Q 027087          171 AALAAALYVDKHA--------------LLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       171 ~~la~~l~~~~~~--------------~~~A~~~~~~al~l~P~~~  202 (228)
                      +..+.+++..++.              .++|...+.+|+...|...
T Consensus       182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence            7777777775533              2799999999998877543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=87.79  E-value=0.79  Score=40.08  Aligned_cols=85  Identities=5%  Similarity=-0.126  Sum_probs=69.2

Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          118 YFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       118 ~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      .|.++-..-|+++.   .|...+.--.+.|-|.+--..|.+++.+.|.+.+.|..-+..-+...++++.++..|.++|++
T Consensus        95 ~~~R~tnkff~D~k---~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~  171 (435)
T COG5191          95 ELYRSTNKFFNDPK---IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM  171 (435)
T ss_pred             eeehhhhcCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence            45566666788888   787777777778889999999999999999999888765554445567999999999999999


Q ss_pred             CCCCCchh
Q 027087          198 DPHYTDLS  205 (228)
Q Consensus       198 ~P~~~~~~  205 (228)
                      +|+.+..+
T Consensus       172 N~~~p~iw  179 (435)
T COG5191         172 NSRSPRIW  179 (435)
T ss_pred             CCCCchHH
Confidence            99998853

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.77  E-value=1.1  Score=27.41  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFA  130 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~  130 (228)
                      .++++.+|...||++.|...++++++ ..++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~   32 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE-EGDEA   32 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence            47899999999999999999999995 44443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.74  E-value=4.5  Score=28.50  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF  131 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~  131 (228)
                      ...+..+++.++...|++++|+..+++++++.....+
T Consensus        40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   40 LAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence            3567889999999999999999999999998766544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.31  E-value=1.7  Score=25.66  Aligned_cols=27  Identities=19%  Similarity=-0.037  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      .+..+|.+-...++|++|+..|++++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            566777777777777777777777744

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=87.00  E-value=18  Score=34.90  Aligned_cols=127  Identities=13%  Similarity=-0.096  Sum_probs=91.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcChh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----------------
Q 027087           72 AATYDPLTQAEKDASAAVSSRVS----DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF----------------  131 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~----~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----------------  131 (228)
                      ....+..+.+...+.++...+..    -+.+|.+.|..-.+..+++.|+...++|... |..+.                
T Consensus       397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhr  475 (835)
T KOG2047|consen  397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHR  475 (835)
T ss_pred             HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHH
Confidence            44455666666666666655443    3677888888888889999999988888654 33211                


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          132 SEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       132 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ....|..++......|-++.-...|++++.+--..|....+.+..+-. ..-++++-+.|++-+.+-+-
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCC
Confidence            012456667777778888888899999866555678888888887766 56889999999999988753

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.64  E-value=2.5  Score=32.57  Aligned_cols=51  Identities=29%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD  148 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~  148 (228)
                      ..+.....+......|+|.-|....+.++..+|++..   +...++.++.++|.
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~---ar~l~A~al~~lg~  119 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE---ARQLKADALEQLGY  119 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHHHH
Confidence            3456778888889999999999999999999999999   88888888766543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.48  E-value=25  Score=31.90  Aligned_cols=127  Identities=6%  Similarity=-0.185  Sum_probs=86.8

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQ------------AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALA  142 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~------------~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~  142 (228)
                      ...++.....-.+.+..+|+..-+|+-+=.++.            ++.-.++-+.....++..+|+...   +|+.+..+
T Consensus        42 ~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~---aW~hR~w~  118 (421)
T KOG0529|consen   42 KEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG---AWHHRKWV  118 (421)
T ss_pred             cccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH---HHHHHHHH
Confidence            355666777777778888887777654433332            223567778888999999999999   99999999


Q ss_pred             HHHcCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCch
Q 027087          143 LYEVGD--REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA---LLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       143 ~~~~g~--~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~---~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +.+.+.  +..=++..++++..++.+-.++.++-.+.-.....   ..+=+++-+++|.-++.+-.+
T Consensus       119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsa  185 (421)
T KOG0529|consen  119 LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSA  185 (421)
T ss_pred             HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhH
Confidence            998765  47888899999777776656665554433332211   344466667777776655444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.07  E-value=10  Score=37.45  Aligned_cols=101  Identities=18%  Similarity=0.052  Sum_probs=74.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---
Q 027087          100 LEKGRELQAIGDFNKALQYFTLVVENYKD---------FAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---  167 (228)
Q Consensus       100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~---------~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---  167 (228)
                      ...+.......++++|.....++...-|.         ...   .....|.+....|+.++|++..+.++..++.+.   
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae---~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~  495 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAE---FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS  495 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence            34466677889999999999888666554         112   355678888999999999999999988877653   


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          168 --EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                        -+...++.+..- .|++++|....+.+.++.-.+...
T Consensus       496 r~~~~sv~~~a~~~-~G~~~~Al~~~~~a~~~a~~~~~~  533 (894)
T COG2909         496 RIVALSVLGEAAHI-RGELTQALALMQQAEQMARQHDVY  533 (894)
T ss_pred             hhhhhhhhhHHHHH-hchHHHHHHHHHHHHHHHHHcccH
Confidence              344455665555 468999999999888886555543

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=85.91  E-value=19  Score=32.06  Aligned_cols=99  Identities=18%  Similarity=0.145  Sum_probs=62.5

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------------C---------CchhHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYK--------------D---------FAFSEY  134 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P--------------~---------~~~~~~  134 (228)
                      ..+-+..+..++++||+-+.+|..++.-  ..--..+|+..|++|++..-              .         +.. .|
T Consensus       200 p~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl-~Y  276 (556)
T KOG3807|consen  200 PPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVL-VY  276 (556)
T ss_pred             cHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchh-hH
Confidence            3445566677889999998888776432  22334455666665554311              1         111 24


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHH
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYP--EVHAALAAALYV  179 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p--~~~~~la~~l~~  179 (228)
                      .-..+++|-.++|+..+|++.++...+..|...  +++.++-.++.+
T Consensus       277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE  323 (556)
T KOG3807|consen  277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLE  323 (556)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence            556789999999999999999999955444322  455555544444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.43  E-value=3.9  Score=37.06  Aligned_cols=60  Identities=15%  Similarity=0.159  Sum_probs=46.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087          100 LEKGRELQAIGDFNKALQYFTLVVENYKD---------FAFSEYARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus       100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~---------~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      ..+-.++.-.|||..|++.++-. +++..         +..   .+|..|.+|..++||.+|++.|..++.-+
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is---~~YyvGFaylMlrRY~DAir~f~~iL~yi  194 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHIS---TYYYVGFAYLMLRRYADAIRTFSQILLYI  194 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchhee---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466778899999999998764 22222         333   57899999999999999999999995533

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.17  E-value=7.1  Score=31.10  Aligned_cols=64  Identities=17%  Similarity=0.053  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ++..+|.-|.+.|++++|++.|.++ +..-..+    +....+-.+.+.. +++.....+..++-.+-..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~-~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFF-GDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhc
Confidence            7889999999999999999999998 3333344    4444444555553 5889999998888776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.07  E-value=5.6  Score=34.29  Aligned_cols=62  Identities=18%  Similarity=0.010  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      ++..++..+...|+++.++..+++.+...|.+-..+..+-.+++. .|+...|+..|++.-+.
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence            567788889999999999999999977767666777777777777 56779999999987663

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.57  E-value=8.7  Score=32.15  Aligned_cols=60  Identities=22%  Similarity=0.077  Sum_probs=50.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF  131 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~  131 (228)
                      .++-+..++++.....-++.+|.++.....+=.++.-.|+|++|...++-+-.++|++..
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            445566788888888888999999988888888899999999999999999999998765

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.13  E-value=2.9  Score=28.61  Aligned_cols=27  Identities=7%  Similarity=0.138  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVV  123 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al  123 (228)
                      ..+..++.-+-+.|++++|+.+|++++
T Consensus         7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682           7 RKYAINAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            334445555555566555555555544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=84.11  E-value=26  Score=33.44  Aligned_cols=103  Identities=12%  Similarity=0.058  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc--CCCchh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HH
Q 027087           95 DALELLEKGRELQ-AIGDFNKALQYFTLVVENY--KDFAFS-EYARVGRALALYEVGDREEAIAEMEDVSISLKGYP-EV  169 (228)
Q Consensus        95 ~a~a~~~lG~~~~-~~g~~~~Ai~~~~~Al~l~--P~~~~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-~~  169 (228)
                      ++.+++.+|.++. ...++++|+.+++|++.+.  +++.+. -.+.+.++.++.+.|... |+..+++.+......+ ..
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~  136 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA  136 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence            5788999999998 7999999999999998887  444431 113456678888888877 9999999977766633 11


Q ss_pred             H---HHHH-HHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          170 H---AALA-AALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       170 ~---~~la-~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      +   +.+- ..+....+++..|.+.++....+.
T Consensus       137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            1   2222 212222258899999999888876

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.93  E-value=27  Score=31.69  Aligned_cols=127  Identities=13%  Similarity=-0.015  Sum_probs=84.7

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC----HHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGD--FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD----REE  151 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~--~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~----~~~  151 (228)
                      .+..+.+...++..+|+..-+|+.+-.++.+.+.  +..-++..+++++.||.+..   +|.-+=.+..+...    ..+
T Consensus        91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh---~W~YRRfV~~~~~~~~~~~~~  167 (421)
T KOG0529|consen   91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH---AWHYRRFVVEQAERSRNLEKE  167 (421)
T ss_pred             hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc---chHHHHHHHHHHhcccccchh
Confidence            3444556667889999999999999999987654  68889999999999998877   66555554444322    456


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----C------CHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDK-----H------ALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~-----~------~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      =+....+++.....|-.+|.++..++-.+-     |      -...-.+.-..|+-.||++....+.
T Consensus       168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            677777774443333366666666554221     2      1223344445667789998887554

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.78  E-value=3.1  Score=22.17  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=17.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 027087          110 GDFNKALQYFTLVVENYKDFAFSEYARVGRA  140 (228)
Q Consensus       110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la  140 (228)
                      |+++.+...|++++...|.+..   .|....
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~---~W~~y~   28 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVE---LWLKYA   28 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChH---HHHHHH
Confidence            4566667777777777676665   454443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.60  E-value=4.8  Score=34.99  Aligned_cols=54  Identities=22%  Similarity=0.161  Sum_probs=29.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087          103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus       103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      +..+...|.+.+|+..-++++.++|-+..   .+..+-.++..+||--.+++.|++.
T Consensus       286 a~~yle~g~~neAi~l~qr~ltldpL~e~---~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQ---DNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHcCChHHHHHHHHHHhhcChhhhH---HHHHHHHHHHHhccchhhhhHHHHH
Confidence            33444555555555555555555555555   4555555555555555555555554

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=83.15  E-value=3.7  Score=27.15  Aligned_cols=27  Identities=26%  Similarity=0.597  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVV  123 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al  123 (228)
                      ..+.+.|.-.-+.|++++|+..|.+++
T Consensus         6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai   32 (69)
T PF04212_consen    6 IELIKKAVEADEAGNYEEALELYKEAI   32 (69)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            334555555555666666666665554

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.99  E-value=4.5  Score=34.94  Aligned_cols=56  Identities=14%  Similarity=0.071  Sum_probs=46.6

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087          108 AIGDFNKALQYFTLVVENYKDFAFSE-YARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus       108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      +..+.++|+..|++++++.+.-.+|+ .|+-.+-.+.+++|+|++-+..|++.+.-+
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI   95 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI   95 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            44689999999999999999887754 355667778999999999999999986543

>PF12854 PPR_1: PPR repeat

Probab=81.92  E-value=3.1  Score=23.48  Aligned_cols=24  Identities=13%  Similarity=0.113  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 027087          135 ARVGRALALYEVGDREEAIAEMED  158 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~  158 (228)
                      .|..+-..|.+.|+.++|.+.|++
T Consensus         9 ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    9 TYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHh
Confidence            466677777777777777777765

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=81.47  E-value=1.8  Score=38.30  Aligned_cols=68  Identities=9%  Similarity=-0.032  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      +.+++.+-.+.+++..|+..-..+++.+++...   +++.++..+....++++|++.++.+....|.+...
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tk---a~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i  345 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTK---AHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI  345 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccChhhCc---HHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence            455666677777777777777777777777777   77888888888888888888888776555655543

>PF12854 PPR_1: PPR repeat

Probab=81.34  E-value=4.1  Score=23.01  Aligned_cols=27  Identities=15%  Similarity=0.153  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTL  121 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~  121 (228)
                      |...|..+-..+.+.|+.++|++.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            455678888999999999999999976

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.68  E-value=3.9  Score=37.07  Aligned_cols=61  Identities=16%  Similarity=0.047  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKG---------YPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      +...+..++.-+|||..|++.++.+ ...+.         +...++..|.++.++ ++|.+|++.|...|..
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMl-rRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLML-RRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            4455667888899999999999887 22211         114567788888885 5999999999988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	7e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-04

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 94  SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153
           +D  + LE G++L A G    AL  F   V+   D      A   RA     +G  + A+
Sbjct: 1   ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---IAYYRRATVFLAMGKSKAAL 57

Query: 154 AEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVK 208
            ++  V I+LK  +          L   +  L  AE+ F      +P   +    +
Sbjct: 58  PDLTKV-IALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 21/167 (12%)

Query: 61  ITNKPSSSDAF---AATYDPL---TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNK 114
           +   P +  A+   A  +  +     A  D +  ++ ++      L++G  L   G  ++
Sbjct: 30  VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89

Query: 115 ALQYFTLVVENYKDFAFSEYAR------------VGRALALYEVGDREEAIAEMEDVSIS 162
           A   F  V+++       + A               +AL  ++  D   AI  + D  + 
Sbjct: 90  AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL-DKILE 148

Query: 163 LK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVK 208
           +     E+    A      +     A +    A+ L    T+  Y  
Sbjct: 149 VCVWDAELRELRAECFI-KEGEPRKAISDLKAASKLKSDNTEAFYKI 194

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 16/139 (11%)

Query: 80  QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR 139
            A       +   V DA     +       G+  KA+       +   D      A    
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT---EAFYKI 194

Query: 140 ALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLL-----------A 187
           +   Y++GD E +++E+ +  + L   +    A       ++K                A
Sbjct: 195 STLYYQLGDHELSLSEVREC-LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253

Query: 188 ENQFTIATLLDPHYTDLSY 206
            +++      +P   + + 
Sbjct: 254 TSKYESVMKTEPSVAEYTV 272

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 17/141 (12%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
           L  A     AAV     + +    +     A+G    AL   T V+    DF     AR+
Sbjct: 19  LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT---AARL 75

Query: 138 GRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLL----------- 186
            R   L + G  +EA  + + V  S     E   A +  +  D+   L            
Sbjct: 76  QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135

Query: 187 ---AENQFTIATLLDPHYTDL 204
              A         +     +L
Sbjct: 136 YTAAITFLDKILEVCVWDAEL 156

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 93  VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152
           ++D  + LE G++L A G    AL  F   V+   D      A   RA     +G  + A
Sbjct: 23  MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---IAYYRRATVFLAMGKSKAA 79

Query: 153 IAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203
           + ++  V I LK  +          L   +  L  AE+ F      +P   +
Sbjct: 80  LPDLTKV-IQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSENE 129

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 81  AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRA 140
            E+  + +   +  +   L  +       GD+  A+ +   ++E     A     R  RA
Sbjct: 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA---ELRELRA 184

Query: 141 LALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDP 199
               + G+  +AI++++     LK    E    ++   Y       L+ ++      LD 
Sbjct: 185 ECFIKEGEPRKAISDLKAA-SKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKLDQ 242

Query: 200 HYTD 203
            +  
Sbjct: 243 DHKR 246

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG 165
                   +A++  + V++   D      A   RA A       +EAI + E      + 
Sbjct: 305 FSKDEKPVEAIRVCSEVLQMEPDNV---NALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 166 YPEVHAALAAALYVDKHA 183
             ++   L  A  + K +
Sbjct: 362 DQQIREGLEKAQRLLKQS 379

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 9/136 (6%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS----- 132
              AE+  S A+S    D   + E G      G++  A ++F   +E  K          
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

Query: 133 -EYARVGRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQ 190
            E           ++    EA+       + L       ++A+             A + 
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQA-LVLIPQNASTYSAIGYIHS-LMGNFENAVDY 292

Query: 191 FTIATLLDPHYTDLSY 206
           F  A  L    T    
Sbjct: 293 FHTALGLRRDDTFSVT 308

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 7/134 (5%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYF----TLVVENYKDFAFSE 133
           +  A +   ++ +    D L L E G       D   A+ +F     LV +   +     
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516

Query: 134 YARVGRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFT 192
                   A  ++   + AI  +    + L      VH A+A   Y+ K    LA     
Sbjct: 517 ATWANLGHAYRKLKMYDAAIDALNQG-LLLSTNDANVHTAIALV-YLHKKIPGLAITHLH 574

Query: 193 IATLLDPHYTDLSY 206
            +  + P+    S 
Sbjct: 575 ESLAISPNEIMASD 588

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 99  LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMED 158
           LL K   L     F   L   T ++E                 +L+E G++ +      D
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLD---VYPLHLASLHESGEKNKLYLISND 364

Query: 159 VSISLKGYPEVHAALAAALY-VDKHALLLAENQFTIATLLDPHYTD 203
           +            A+      V+K +   A   F+ ++ +DP +  
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKIS--EARRYFSKSSTMDPQFGP 408

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 6/152 (3%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
           + Q   D     ++        +E+G  +  + +  +A   F  V +   +      A  
Sbjct: 3   MLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE---AWR 59

Query: 138 GRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATL 196
              L   E      AI  +   +  L      VHAALA +   ++H    A        L
Sbjct: 60  SLGLTQAENEKDGLAIIALNH-ARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAWLL 117

Query: 197 LDPHYTDLSYVKDTKHWPPSLVSSLRHFITLS 228
             P Y  L  V          ++        +
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 6/128 (4%)

Query: 80  QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR 139
           +       A+    +++     +G+    + ++++A + F    E   +  F        
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI---QL 344

Query: 140 ALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198
           A   Y     ++      +         PEV    A  L  DK+    A  Q+ +A  L+
Sbjct: 345 ACLAYRENKFDDCETLFSEA-KRKFPEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELE 402

Query: 199 PHYTDLSY 206
                +  
Sbjct: 403 NKLDGIYV 410

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 7/127 (5%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
             +     +     +   A+ L   G       D   A +     +E +        + +
Sbjct: 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV----NSYI 274

Query: 138 GRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATL 196
             AL + +  D  E     +  ++ L      V+       ++ ++    A   F  A  
Sbjct: 275 YMALIMADRNDSTEYYNYFDK-ALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKE 332

Query: 197 LDPHYTD 203
           LDP    
Sbjct: 333 LDPENIF 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 96  ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155
           AL L +KG +      ++ A++Y+   +E  +D  F  Y+    +     VGD ++ +  
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVF--YS--NLSACYVSVGDLKKVVEM 61

Query: 156 MEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198
                + LK  Y +V    A+A          A    ++ +L  
Sbjct: 62  STKA-LELKPDYSKVLLRRASANE-GLGKFADAMFDLSVLSLNG 103

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 7/133 (5%)

Query: 73  ATYDPLTQAEKDASAAVSSRVSDALELLEKGREL--QAIGDFNKALQYFTLVVENYKDFA 130
           A YD   +A+K+    +S+    + E  +K  E   +A   F + L       +  +  A
Sbjct: 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237

Query: 131 FSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQ 190
            S        +  +   D   A  ++   +I L      +  +A  +  D++      N 
Sbjct: 238 ISLE---HTGIFKFLKNDPLGAHEDI-KKAIELFPRVNSYIYMALIMA-DRNDSTEYYNY 292

Query: 191 FTIATLLDPHYTD 203
           F  A  LD + + 
Sbjct: 293 FDKALKLDSNNSS 305

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 25/135 (18%), Positives = 37/135 (27%), Gaps = 6/135 (4%)

Query: 94  SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153
            D  +  E+G      GD   A+  F   V+          A         E      AI
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME---AWQYLGTTQAENEQELLAI 118

Query: 154 AEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKH 212
           + +    + LK        ALA +   ++     A           P Y  L    +   
Sbjct: 119 SALRR-CLELKPDNQTALMALAVSFT-NESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176

Query: 213 WPPSLVSSLRHFITL 227
               L  S R   +L
Sbjct: 177 GGAGLGPSKRILGSL 191

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 7/109 (6%)

Query: 94  SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153
           S A +   +G +      F++A++++    E +KD          RA A YE G+ E AI
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT----YLNNRAAAEYEKGEYETAI 58

Query: 154 AEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201
           + + D  +         +  ++ +                         
Sbjct: 59  STLNDA-VEQGREMRADYKVISKSFA-RIGNAYHKLGDLKKTIEYYQKS 105

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 61  ITNKPSSSDAF--AATYDPLTQAEK---DASAAVSSRVSDALELLEKGRELQAIGDFNKA 115
           I     S      A     L  AEK    A A        A E   +G+E     D+  A
Sbjct: 99  IEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158

Query: 116 LQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALA 174
           ++ +T +++   + A        RA AL ++    EAIA+     I     +   +   A
Sbjct: 159 VKAYTEMIKRAPEDA---RGYSNRAAALAKLMSFPEAIADCNKA-IEKDPNFVRAYIRKA 214

Query: 175 AALYVDKHALLLAENQFTIATLLDPHYTDLSYVK 208
            A          A      A   D    + S  +
Sbjct: 215 TAQI-AVKEYASALETLDAARTKDAEVNNGSSAR 247

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
              AE+           +   LL            +++  + TL ++     A    A  
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA---EAYS 71

Query: 138 GRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATL 196
                  E G  +EAI      ++ LK  + + +  LAAAL      +  A   +  A  
Sbjct: 72  NLGNVYKERGQLQEAIEHY-RHALRLKPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQ 129

Query: 197 LDPHYTD 203
            +P    
Sbjct: 130 YNPDLYC 136

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
           L +A +    A+  +       +     L A GD   A+Q +   ++   D       R 
Sbjct: 83  LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY---CVRS 139

Query: 138 GRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATL 196
                L  +G  EEA A      I  +  +    + L       +  + LA + F  A  
Sbjct: 140 DLGNLLKALGRLEEAKACYLKA-IETQPNFAVAWSNLGCVFN-AQGEIWLAIHHFEKAVT 197

Query: 197 LDPHYTD 203
           LDP++ D
Sbjct: 198 LDPNFLD 204

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 13/109 (11%)

Query: 96  ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155
           A    + G    A     +  +                      +   ++    + +   
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLL----------LLSSIHFQCRRLDRSAHF 55

Query: 156 MEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203
              ++I       E ++ L      ++  L  A   +  A  L P + D
Sbjct: 56  S-TLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHALRLKPDFID 102

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 6/130 (4%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
           ++ +EK       +   D     E+G +    GD    + +    +      A    A  
Sbjct: 47  VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE---AWQ 103

Query: 138 GRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATL 196
              +   E  + + AI  ++   + L+    +   ALA +   +      A         
Sbjct: 104 FLGITQAENENEQAAIVALQR-CLELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIK 161

Query: 197 LDPHYTDLSY 206
            +P Y  L  
Sbjct: 162 QNPKYKYLVK 171

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 11/107 (10%), Positives = 29/107 (27%), Gaps = 5/107 (4%)

Query: 101 EKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVS 160
           E     +   +++KA  ++  +++   +           A      G  ++A+   E + 
Sbjct: 59  ELALAYKKNRNYDKAYLFYKELLQKAPNNV---DCLEACAEMQVCRGQEKDALRMYEKI- 114

Query: 161 ISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206
           + L+      +  L    Y+                          Y
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 16/120 (13%)

Query: 98  ELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-------------FSEYARVGRALALY 144
           E+L+K       G   +A+ YF   +    D                S       ALA  
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 145 EVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203
           +  + ++A    +++ +       +   A A    V +     A   +     L+     
Sbjct: 66  KNRNYDKAYLFYKEL-LQKAPNNVDCLEACAEM-QVCRGQEKDALRMYEKILQLEADNLA 123

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 10/129 (7%)

Query: 78  LTQAEKDASAAVS----SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE 133
               E D +         R + A++L  +G       +FN+A++Y+   +E   +     
Sbjct: 3   HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV-- 60

Query: 134 YARVGRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFT 192
                 +      GD E+ I E    ++ +K  + +     A+A          A    +
Sbjct: 61  -FYSNISACYISTGDLEKVI-EFTTKALEIKPDHSKALLRRASANE-SLGNFTDAMFDLS 117

Query: 193 IATLLDPHY 201
           + +L     
Sbjct: 118 VLSLNGDFD 126

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 102 KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161
           +G+    + D+  A + F        +  +        A  LY+ G   E+ A   + + 
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI---QLACLLYKQGKFTESEAFFNE-TK 371

Query: 162 SLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206
                 PEV    A  L  D+     A  Q+ IA  L+     +  
Sbjct: 372 LKFPTLPEVPTFFAEILT-DRGDFDTAIKQYDIAKRLEEVQEKIHV 416

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 80  QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR 139
                 +     R + AL L   G       +   A       +  +        + +  
Sbjct: 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP----NSYIFL 282

Query: 140 ALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198
           AL L +  + +E   +    ++ L   YP  +       +        A+  F  A  L+
Sbjct: 283 ALTLADKENSQEFF-KFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLN 340

Query: 199 PHYTD 203
           P    
Sbjct: 341 PENVY 345

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 9/109 (8%)

Query: 96  ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155
           A+ L    ++   +    + L    L  +              R +    +G R  A  +
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQ------LLYERGVLYDSLGLRALARND 65

Query: 156 MEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203
               +++++   PEV   L   L         A   F     LDP Y  
Sbjct: 66  FSQ-ALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNY 112

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 102 KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161
            G  L   G+F+ A + F  V+E    +    YA + R +ALY  G  + A  ++     
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYYGGRDKLAQDDLLAF-Y 138

Query: 162 SLK-GYPEVHAALAAALYVDKH--ALLLAENQFTIATLLDPHYTDLSY 206
                 P     L  A        A  + +  F  +      +  + +
Sbjct: 139 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 7/109 (6%)

Query: 98  ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157
                   L    ++ +A++ F  +     +     Y    RA+  YE+   + A  ++E
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP---YIYNRRAVCYYELAKYDLAQKDIE 61

Query: 158 DV--SISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203
                ++               L   K    LA  Q+  A   D    D
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILM-KKGQDSLAIQQYQAAVDRDTTRLD 109

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 97  LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM 156
           ++ L+  +EL   GD   ALQ     ++         Y  +G   A  ++GD ++A+   
Sbjct: 1   MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGN--AYRKLGDWQKALNNY 58

Query: 157 EDVSISLK-GYPEVHA 171
           +  +I L    P + A
Sbjct: 59  QS-AIELNPDSPALQA 73

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 98  ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157
             +E+G  +  + +  +A   F  V +   +      A     L   E      AI  + 
Sbjct: 19  NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---EAWRSLGLTQAENEKDGLAIIALN 75

Query: 158 DVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204
                L      VHAALA + + ++H    A        L  P Y  L
Sbjct: 76  HA-RMLDPKDIAVHAALAVS-HTNEHNANAALASLRAWLLSQPQYEQL 121

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162
           G   + +G++ KA       V+ + +       RV  A+ LY +G  E+ +  +  +   
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQ---ALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

Query: 163 LKGYPEVHA-ALAAALYVDK 181
                 + +   A   Y DK
Sbjct: 91  TSDDETIQSYKQAILFYADK 110

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 6/102 (5%)

Query: 103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162
                  GD+ KA + FT  +E  K+ A      +  A  L  V + E A+A  +   + 
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDA---IPYINFANLLSSVNELERALAFYDKA-LE 85

Query: 163 LK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203
           L       +          K     A++ F  A        D
Sbjct: 86  LDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGD 126

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 8/127 (6%)

Query: 80  QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR 139
             +++       R       ++ G      G+  +A       +E     A    A    
Sbjct: 21  MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA---DAHAAL 77

Query: 140 ALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFT--IATL 196
           A+      + + A  E    +++       V       LY ++     A  +        
Sbjct: 78  AVVFQTEMEPKLADEEYRK-ALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDT 135

Query: 197 LDPHYTD 203
           L P  + 
Sbjct: 136 LYPERSR 142

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 90  SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR 149
                +AL     G    A  +F  A   F  +V  Y     +    +   L+ Y  G  
Sbjct: 35  GVYTPNAL--YWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN 92

Query: 150 EEAIAEMEDVSISLKGYPEVHAALAA 175
            EA   ++ V      YP   AA  A
Sbjct: 93  TEAQQTLQQV---ATQYPGSDAARVA 115

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
           + +A +    A+      A         LQ  G   +AL ++   +     FA    A  
Sbjct: 25  IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA---DAYS 81

Query: 138 GRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATL 196
                L E+ D + A+       I +   + + H+ LA+    D   +  A   +  A  
Sbjct: 82  NMGNTLKEMQDVQGALQCYTRA-IQINPAFADAHSNLASIHK-DSGNIPEAIASYRTALK 139

Query: 197 LDPHYTDL 204
           L P + D 
Sbjct: 140 LKPDFPDA 147

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 45/286 (15%), Positives = 81/286 (28%), Gaps = 84/286 (29%)

Query: 11  LLLSGSQSEAQRRNPIKTPKTPLQLPLTSRRLLFFSLPF-SSLLLLPN--NRKI------ 61
           LL     +   R +     K  +       R L  S P+ + LL+L N  N K       
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 62  -------TNKPSSSDAFAATY----------DPLTQAEKDA--SAAVSSRVSD------- 95
                  T     +D  +A              LT  E  +     +  R  D       
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 96  ----ALELLEKGRELQAIGDFNKALQYF--------TLVVE-------------NYKDFA 130
                L ++     ++   D       +        T ++E              +   +
Sbjct: 325 TNPRRLSII--AESIR---DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 131 -FSEYARV-GRALALY----EVGDREEAIAEMEDVSISLKGYPE----VHAALAAALYVD 180
            F   A +    L+L        D    + ++   S+  K   E    +      ++Y++
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLE 434

Query: 181 KHALLLAENQFTI-ATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFI 225
               L  EN++ +  +++D HY            PP L       I
Sbjct: 435 LKVKL--ENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHI 477

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 38.4 bits (90), Expect = 9e-04
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 17/123 (13%)

Query: 84  DASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV--GRAL 141
            A+   + +   A+E +      QA      AL+               +       RA 
Sbjct: 3   KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS------------DPKNELAWLVRAE 50

Query: 142 ALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200
               +   ++A       ++S+K    E++      L    +    +   F  A L DP 
Sbjct: 51  IYQYLKVNDKAQESFRQ-ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA-LADPT 108

Query: 201 YTD 203
           Y  
Sbjct: 109 YPT 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.79
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.77
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.75
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.75
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.71
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.71
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.71
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.69
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.69
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.68
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.68
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.66
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.66
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.66
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.65
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.65
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.65
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.64
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.63
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.63
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.62
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.62
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.61
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.61
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.6
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.6
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.59
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.58
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.58
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.58
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.58
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.58
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.58
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.57
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.57
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.57
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.56
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.56
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.56
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.56
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.56
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.55
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.54
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.54
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.54
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.54
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.52
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.52
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.52
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.51
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.5
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.5
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.49
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.48
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.48
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.48
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.48
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.48
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.47
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.47
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.47
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.46
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.46
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.45
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.45
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.45
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.45
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.44
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.44
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.43
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.43
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.42
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.42
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.37
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.35
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.35
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.32
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.32
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.31
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.3
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.3
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.29
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.29
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.28
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.28
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.27
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.27
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.26
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.26
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.25
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.23
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.22
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.22
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.21
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.2
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.19
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.18
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.16
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.16
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.13
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.09
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.09
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.04
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.99
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.97
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.93
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.91
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.86
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.85
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.85
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.84
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.84
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.83
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.81
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.68
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.68
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.65
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.6
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.5
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.47
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.43
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.38
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.24
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.23
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.16
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.06
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.96
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.92
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.91
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.84
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.58
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.55
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.36
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.36
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.11
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.09
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.48
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.39
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.36
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.8
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.61
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.6
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.53
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.45
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.37
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.86
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.47
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.18
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.9
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.44
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.33
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.32
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.85
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.59
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.49
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.24

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=4e-21  Score=144.00  Aligned_cols=115  Identities=18%  Similarity=0.124  Sum_probs=108.4

Q ss_pred             HHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087           88 AVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus        88 al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      +..+||+.++++.++|+.+++.|+|++|+..|+++++++|+++.   +++++|.++..+|++++|+..|++++...|.++
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---LYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence            45689999999999999999999999999999999999999999   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          168 EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++++.+|.++..+ |++++|++.|+++++++|++.+++.
T Consensus        82 ~a~~~lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~a~~  119 (126)
T 4gco_A           82 KGYIRKAACLVAM-REWSKAQRAYEDALQVDPSNEEARE  119 (126)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            9999999999885 5999999999999999999988654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.84  E-value=3.6e-20  Score=143.72  Aligned_cols=113  Identities=10%  Similarity=-0.108  Sum_probs=107.5

Q ss_pred             HHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087           86 SAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG  165 (228)
Q Consensus        86 ~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~  165 (228)
                      ..+++++|+++.+++++|.++.+.|++++|+..|+++++++|+++.   +|+++|.++..+|++++|+..|++++...|.
T Consensus        26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            3456899999999999999999999999999999999999999999   9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          166 YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       166 ~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      ++++++++|.++..+ |++++|+..|+++++++|+..
T Consensus       103 ~~~~~~~lg~~~~~l-g~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRL-KAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHH
T ss_pred             CcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999984 599999999999999999765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=1.3e-19  Score=139.29  Aligned_cols=127  Identities=9%  Similarity=-0.027  Sum_probs=115.9

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      .+.++..+..++..+|+++..++++|.+|.+.|+|++|+..|+++++++|+++.   +++++|.++..+|++++|+..|+
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~~~~~A~~~~~   89 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---AHRFLGLLYELEENTDKAVECYR   89 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCchHHHHHHHH
Confidence            466778888899999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchhhhh
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAEN-QFTIATLLDPHYTDLSYVK  208 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~-~~~~al~l~P~~~~~~~~~  208 (228)
                      +++...|.++++++.+|.++...+ ++++|.. +++++++++|+++.++...
T Consensus        90 ~al~~~p~~~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l~P~~~~~~~l~  140 (150)
T 4ga2_A           90 RSVELNPTQKDLVLKIAELLCKND-VTDGRAKYWVERAAKLFPGSPAVYKLK  140 (150)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            999999999999999999998865 6666655 4699999999998875543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.82  E-value=4.6e-19  Score=168.55  Aligned_cols=150  Identities=16%  Similarity=0.136  Sum_probs=135.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..++|+..++++++++|+++.+++++|.++.++|++++|+..|+++++++|++..   +++|+|.++..+|++++
T Consensus        19 ~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---a~~nLg~~l~~~g~~~~   95 (723)
T 4gyw_A           19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---AYSNMGNTLKEMQDVQG   95 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHH
Confidence            456788999999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh-----hhhcCCCChhHHHHHHHhhc
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY-----VKDTKHWPPSLVSSLRHFIT  226 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  226 (228)
                      |++.|++++...|.+++++.++|.++.. .|++++|++.|+++++++|++..++.     ...+.+|.++ ++.++++++
T Consensus        96 A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A-~~~~~kal~  173 (723)
T 4gyw_A           96 ALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY-DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH-HHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH-HHHHHHHHH
Confidence            9999999999999999999999999988 56999999999999999999998755     3555667653 444555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.81  E-value=6.2e-19  Score=135.47  Aligned_cols=116  Identities=14%  Similarity=0.029  Sum_probs=110.5

Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087           85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK  164 (228)
Q Consensus        85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~  164 (228)
                      +.++++.+|++..+++++|.++...|++++|+..|+++++++|+++.   +++++|.++..+|++++|+..|++++...|
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---FFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            56788999999999999999999999999999999999999999999   999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          165 GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       165 ~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .++.+++++|.++... |++++|+..|+++++++|+++..
T Consensus        87 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQX-GELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             TCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCCcc
Confidence            9999999999999884 68999999999999999987765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=2.9e-18  Score=139.19  Aligned_cols=130  Identities=19%  Similarity=0.150  Sum_probs=115.4

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAI-----------GDFNKALQYFTLVVENYKDFAFSEYARVGRA  140 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~-----------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la  140 (228)
                      ....+..+.|+..+.++++.+|+++.+++++|.++..+           |++++|+..|+++++++|++..   +++++|
T Consensus        49 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---~~~~lg  125 (217)
T 2pl2_A           49 QLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP---LHLQRG  125 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH---HHHHHH
Confidence            44567778888888889999999999999999999999           9999999999999999999998   899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          141 LALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++..+|++++|+..|++++... .+++++.++|.++... |++++|+..|+++++++|++...++
T Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~P~~~~~~~  189 (217)
T 2pl2_A          126 LVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSM-GRLDEALAQYAKALEQAPKDLDLRV  189 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHH
Confidence            99999999999999999998888 8889999999988884 5889999999999999999887655

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=1.9e-18  Score=139.34  Aligned_cols=127  Identities=11%  Similarity=0.023  Sum_probs=115.6

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLE----------------KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYAR  136 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~----------------lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~  136 (228)
                      ...+..+.|+..+..+++.+|+++.+++.                +|.++...|++++|+..|+++++++|++..   ++
T Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~   91 (208)
T 3urz_A           15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD---CL   91 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HH
Confidence            45577889999999999999999999999                999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----------------------------------C
Q 027087          137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK----------------------------------H  182 (228)
Q Consensus       137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~----------------------------------~  182 (228)
                      +++|.++..+|++++|+..|++++...|.++++++++|.+++..+                                  |
T Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~  171 (208)
T 3urz_A           92 EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT  171 (208)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999988765432                                  3


Q ss_pred             CHHHHHHHHHHHHhcCCCCC
Q 027087          183 ALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       183 ~~~~A~~~~~~al~l~P~~~  202 (228)
                      ++++|+..|+++++++|+..
T Consensus       172 ~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          172 RYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             THHHHHHHHHHHTTTSCCHH
T ss_pred             CHHHHHHHHHHHHHhCCCHH
Confidence            57889999999999999754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.79  E-value=2e-18  Score=130.80  Aligned_cols=118  Identities=15%  Similarity=-0.005  Sum_probs=109.6

Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087           85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK  164 (228)
Q Consensus        85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~  164 (228)
                      +..+++.+|++...++++|.++...|++++|+..|++++.++|++..   +++++|.++..+|++++|+..|++++...|
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---YFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34567889999999999999999999999999999999999999999   999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          165 GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       165 ~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++.+++.+|.++... |++++|+..|+++++++|+++....
T Consensus        84 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQL-GDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             TCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcchHH
Confidence            9999999999999884 6999999999999999998877543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=4.2e-18  Score=150.80  Aligned_cols=151  Identities=10%  Similarity=-0.006  Sum_probs=132.4

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGD-FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~-~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ...+..+.|+..+..+++++|++..+|+++|.++..+|+ +++|+..|+++++++|++..   +|+++|.++..+|++++
T Consensus       108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~---a~~~~g~~~~~~g~~~e  184 (382)
T 2h6f_A          108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQ  184 (382)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCCTT
T ss_pred             HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHccCHHH
Confidence            445668889999999999999999999999999999997 99999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhh-----hcCCC-ChhH----HHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVK-----DTKHW-PPSL----VSSL  221 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~-----~~~~~-~~~~----~~~~  221 (228)
                      |+..|++++...|.++.+++++|.++..+ |++++|+..|+++|+++|++..+++..     .+... .+++    +..+
T Consensus       185 Al~~~~kal~ldP~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~  263 (382)
T 2h6f_A          185 ELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT  263 (382)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            99999999999999999999999999985 488999999999999999999876532     21233 4444    4566


Q ss_pred             HHhhcc
Q 027087          222 RHFITL  227 (228)
Q Consensus       222 ~~~~~~  227 (228)
                      +++|++
T Consensus       264 ~~Al~l  269 (382)
T 2h6f_A          264 LEMIKL  269 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=7.7e-18  Score=136.66  Aligned_cols=129  Identities=16%  Similarity=0.073  Sum_probs=121.1

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc------
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV------  146 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~------  146 (228)
                      .+.+..+.|+..+.++++.+|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+      
T Consensus        16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~~~~~~~   92 (217)
T 2pl2_A           16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---GYMVLSEAYVALYRQAED   92 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHTCSS
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHhhhhhhh
Confidence            45567889999999999999999999999999999999999999999999999999999   999999999999      


Q ss_pred             -----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          147 -----GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       147 -----g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                           |++++|+..|++++...|.+++++..+|.++.. .|++++|+..|+++++++ ++...++
T Consensus        93 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~  155 (217)
T 2pl2_A           93 RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-LGERDKAEASLKQALALE-DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred             hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcc-cchHHHH
Confidence                 999999999999999999999999999999988 569999999999999999 7776554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.77  E-value=1.1e-17  Score=129.36  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=109.1

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~  170 (228)
                      .++.++..++.+|.++...|+|++|+..|+++++++|++..   +++++|.++..+|++++|+..|++++...|.++.++
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   82 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---YLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW   82 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            36778999999999999999999999999999999999999   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcC
Q 027087          171 AALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTK  211 (228)
Q Consensus       171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~  211 (228)
                      +.+|.+++.+ |++++|+..|+++++++|++...++...+.
T Consensus        83 ~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           83 SRLGLARFDM-ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHc-cCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            9999999884 699999999999999999999977665533

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=1.4e-17  Score=124.45  Aligned_cols=105  Identities=15%  Similarity=0.028  Sum_probs=95.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP-----  167 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-----  167 (228)
                      ++.+.++.++|++++++|+|++|+..|+++++++|++..   +++|+|.+|..+|++++|+..|++++...|.++     
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~---~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~   81 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT---FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL   81 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence            466788999999999999999999999999999999999   999999999999999999999999988777553     


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          168 --EVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                        .++..+|.++.. .|++++|++.|+++++.+|+.
T Consensus        82 ~a~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           82 IAKAMSRAGNAFQK-QNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCcCH
Confidence              467788888877 469999999999999998864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.75  E-value=1.8e-17  Score=157.66  Aligned_cols=132  Identities=20%  Similarity=0.249  Sum_probs=116.0

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~  170 (228)
                      ..|+++++++++|.++.++|++++|++.|+++++++|++..   +++|+|.+|.++|++++|+..|++++...|.+++++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~   80 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY   80 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            36999999999999999999999999999999999999999   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh-----hhcCCCChhHHHHHHHhhcc
Q 027087          171 AALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV-----KDTKHWPPSLVSSLRHFITL  227 (228)
Q Consensus       171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  227 (228)
                      +++|.++..+ |++++|++.|+++++++|++.+++..     ....++ +..+..+++++++
T Consensus        81 ~nLg~~l~~~-g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~-~eAi~~~~~Al~l  140 (723)
T 4gyw_A           81 SNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI-PEAIASYRTALKL  140 (723)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence            9999999884 69999999999999999999987653     222233 3445666766654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.75  E-value=1.6e-16  Score=124.14  Aligned_cols=150  Identities=13%  Similarity=0.064  Sum_probs=118.7

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|+..+.++++++|+++.+++++|.++...|++++|+..+++++..+|++..   ++.++|.++...+++++|
T Consensus        16 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a   92 (184)
T 3vtx_A           16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---AYYILGSANFMIDEKQAA   92 (184)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---HHHHHHHHHHHcCCHHHH
Confidence            44567788888889999999999999999999999999999999999999998888888   888888888888888888


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh-----hhcCCCChhHHHHHHHhhcc
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV-----KDTKHWPPSLVSSLRHFITL  227 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  227 (228)
                      +..+++++...|.+++++..+|.++.. .|++++|++.|+++++++|++..+++.     ....++ +..+..+++++++
T Consensus        93 ~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~  170 (184)
T 3vtx_A           93 IDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR-DEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH-HHHHHHHHHHHhC
Confidence            888888888888888888888888877 457888888888888888888776552     222222 2345556665543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.6e-17  Score=121.38  Aligned_cols=102  Identities=21%  Similarity=0.118  Sum_probs=98.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~  172 (228)
                      |.++..++++|..+...|+|++|+..|+++++++|++..   +++++|.++..+|++++|+..|++++...|.++.+++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            567889999999999999999999999999999999999   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          173 LAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       173 la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      +|.++..+ |++++|+..|+++++++
T Consensus        78 lg~~~~~~-~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           78 KATAQIAV-KEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hCHHHHHHHHHHHHHhC
Confidence            99999884 68999999999999999

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=1.7e-17  Score=146.81  Aligned_cols=133  Identities=9%  Similarity=-0.033  Sum_probs=122.8

Q ss_pred             HhhCCC-chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           72 AATYDP-LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        72 a~~~~~-~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      ....+. .+.++..+.++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..   +|+++|.++..+|+++
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~---a~~~lg~~~~~~g~~~  217 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH---AWQHRQWVIQEFKLWD  217 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCCT
T ss_pred             HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH---HHHHHHHHHHHcCChH
Confidence            345565 889999999999999999999999999999999999999999999999999999   9999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHhcCCCCCchhhh
Q 027087          151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLA-----ENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A-----~~~~~~al~l~P~~~~~~~~  207 (228)
                      +|+..|++++...|.++.+++++|.++..++|.+++|     ++.|+++++++|++..+++.
T Consensus       218 eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~  279 (382)
T 2h6f_A          218 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY  279 (382)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999999998866665777     59999999999999887553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.72  E-value=1e-16  Score=118.86  Aligned_cols=102  Identities=21%  Similarity=0.166  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL  177 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l  177 (228)
                      .++.+|..+.+.|++++|+..|+++++++|++..   +++++|.++...|++++|+..|++++...|.+++++..+|.++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4799999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          178 YVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       178 ~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ... |++++|+..|+++++++|++..
T Consensus        96 ~~~-g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           96 TNE-HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHH-HHHHHHHHHHHHHHC-------
T ss_pred             HHc-CCHHHHHHHHHHHHHhCcCCCC
Confidence            885 5899999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.71  E-value=3.3e-16  Score=122.31  Aligned_cols=127  Identities=15%  Similarity=0.030  Sum_probs=119.3

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.++..+..++..+|++..++..+|.++...++++.|+..++++++++|++..   ++..+|.++..+|++++
T Consensus        49 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~---~~~~lg~~~~~~g~~~~  125 (184)
T 3vtx_A           49 YMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYAD---AYYKLGLVYDSMGEHDK  125 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---HHHHHHHHHHHhCCchh
Confidence            345677788888889999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      |++.|++++...|.+++++.++|.++.. .|++++|++.|+++++++|+++
T Consensus       126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          126 AIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHhCCccCH
Confidence            9999999999999999999999999988 4689999999999999999764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.71  E-value=7.3e-17  Score=125.99  Aligned_cols=109  Identities=15%  Similarity=0.043  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---------SEYARVGRALALYEVGDREEAIAEMEDVSIS---  162 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~---  162 (228)
                      .+..++++|+.+...|+|++|+..|+++++++|+++.         ..-+|+|+|.++..+|+|++|+.+|+++|..   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            5667899999999999999999999999999999421         0117999999999999999999999999999   


Q ss_pred             ----cCCCHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          163 ----LKGYPEVH----AALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       163 ----~~~~p~~~----~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                          .|.++.+|    +++|.++..+ |++++|+..|+++++++|++...
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~l-gr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHC-CCHHHHHHHHHHHHhcCCCcHHH
Confidence                89899999    9999999995 59999999999999999998774

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.71  E-value=2.3e-16  Score=127.50  Aligned_cols=131  Identities=18%  Similarity=0.198  Sum_probs=120.3

Q ss_pred             HhhCCCchHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRV-SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      ....+..+.|+..+..+++.+| .+..+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|+++
T Consensus        17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~   93 (228)
T 4i17_A           17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN---AYIGKSAAYRDMKNNQ   93 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH---HHHHHHHHHHHTTCHH
T ss_pred             HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH---HHHHHHHHHHHcccHH
Confidence            3456778899999999999999 89999999999999999999999999999999999999   9999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchhh
Q 027087          151 EAIAEMEDVSISLKGYP-------EVHAALAAALYVDKHALLLAENQFTIATLLDPH--YTDLSY  206 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p-------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~--~~~~~~  206 (228)
                      +|+..|++++...|.++       +++..+|.++.. .|++++|+..|+++++++|+  +..+++
T Consensus        94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~  157 (228)
T 4i17_A           94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ-AGNIEKAEENYKHATDVTSKKWKTDALY  157 (228)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH-hccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence            99999999999999998       668888998888 46999999999999999999  766544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.71  E-value=3.1e-16  Score=117.15  Aligned_cols=103  Identities=16%  Similarity=0.132  Sum_probs=97.5

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..+.|+..+..+++++|+++.+++++|.++..+|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus        23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~~~~~   99 (126)
T 4gco_A           23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK---GYIRKAACLVAMREWSK   99 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHCCCHHH
Confidence            456677899999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAAL  177 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l  177 (228)
                      |+..|++++...|.+++++..++.++
T Consensus       100 A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          100 AQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999888754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.69  E-value=4.6e-16  Score=121.06  Aligned_cols=126  Identities=9%  Similarity=0.026  Sum_probs=114.9

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HHHcCCH--HHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALA-LYEVGDR--EEA  152 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~-~~~~g~~--~~A  152 (228)
                      +..+.++..+..+++.+|+++.+++.+|.++...|++++|+..|+++++++|++..   +++++|.+ +...|++  ++|
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---LYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---HHHHHHHHHHHHTTTCCCHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhcCCcchHHH
Confidence            34556677788899999999999999999999999999999999999999999999   99999999 8899999  999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      +..|++++...|.++.+++.+|.+++. .|++++|+..|+++++++|++....
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFM-QANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCccHH
Confidence            999999999999999999999999988 4699999999999999999987643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.69  E-value=4.6e-16  Score=125.71  Aligned_cols=131  Identities=14%  Similarity=0.099  Sum_probs=119.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-------FSEYARVGRALALY  144 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-------~~~~a~~~la~~~~  144 (228)
                      ....+..+.|+..+..+++.+|++..+++++|.++..+|++++|+..|+++++++|++.       .   +++++|.++.
T Consensus        52 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~---~~~~~g~~~~  128 (228)
T 4i17_A           52 ADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI---YYLKEGQKFQ  128 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH---HHHHHhHHHH
Confidence            45667788999999999999999999999999999999999999999999999999998       5   6999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHH
Q 027087          145 EVGDREEAIAEMEDVSISLKG--YPEVHAALAAALYVDKHAL---------------------------LLAENQFTIAT  195 (228)
Q Consensus       145 ~~g~~~~A~~~~~~al~~~~~--~p~~~~~la~~l~~~~~~~---------------------------~~A~~~~~~al  195 (228)
                      .+|++++|+..|++++...|.  +++++.++|.+++..+ +.                           ++|+..|++++
T Consensus       129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  207 (228)
T 4i17_A          129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV  207 (228)
T ss_dssp             HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999887788  7889999999988855 55                           89999999999


Q ss_pred             hcCCCCCchhh
Q 027087          196 LLDPHYTDLSY  206 (228)
Q Consensus       196 ~l~P~~~~~~~  206 (228)
                      +++|++..+..
T Consensus       208 ~l~p~~~~~~~  218 (228)
T 4i17_A          208 TLSPNRTEIKQ  218 (228)
T ss_dssp             HHCTTCHHHHH
T ss_pred             hcCCCCHHHHH
Confidence            99999987644

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.68  E-value=6.6e-16  Score=114.57  Aligned_cols=107  Identities=18%  Similarity=0.089  Sum_probs=100.7

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~  170 (228)
                      .++.++..++.+|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++|+..|++++...|.++.++
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH
Confidence            46788999999999999999999999999999999999999   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          171 AALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      +.+|.++... |++++|+..|+++++++|+.
T Consensus        81 ~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           81 FFLGQCQLEM-ESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-hhHHHHHHHHHHHHHHChhH
Confidence            9999999884 68999999999999999983

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.68  E-value=1.1e-16  Score=150.97  Aligned_cols=133  Identities=14%  Similarity=0.068  Sum_probs=123.0

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .+.+..+.|+..+.++++.+|+++.+++++|.++..+|++++|++.|+++++++|++..   +++++|.++.++|++++ 
T Consensus       444 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---~~~~lg~~~~~~g~~~~-  519 (681)
T 2pzi_A          444 LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA---PKLALAATAELAGNTDE-  519 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHHTCCCT-
T ss_pred             HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCChHH-
Confidence            34566778888888999999999999999999999999999999999999999999999   99999999999999999 


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhc
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDT  210 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~  210 (228)
                      +..|++++...|.++++++++|.++.. .|++++|++.|+++++++|++..+++....
T Consensus       520 ~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~~~~  576 (681)
T 2pzi_A          520 HKFYQTVWSTNDGVISAAFGLARARSA-EGDRVGAVRTLDEVPPTSRHFTTARLTSAV  576 (681)
T ss_dssp             TCHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHH-cCCHHHHHHHHHhhcccCcccHHHHHHHHH
Confidence            999999999999999999999999988 468999999999999999999988765443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.67  E-value=7.3e-16  Score=124.11  Aligned_cols=109  Identities=15%  Similarity=0.025  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH----------------HHHHHHHcCCHHHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG----------------RALALYEVGDREEAIAEMED  158 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~----------------la~~~~~~g~~~~A~~~~~~  158 (228)
                      ++..++..|..+...|++++|+..|+++++++|+++.   ++++                +|.++..+|++++|+..|++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH---HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5677899999999999999999999999999999999   8999                99999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      ++...|.+++++..+|.++... |++++|+..|+++++++|++..+++.
T Consensus        80 al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~  127 (208)
T 3urz_A           80 LLQKAPNNVDCLEACAEMQVCR-GQEKDALRMYEKILQLEADNLAANIF  127 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            9999999999999999999885 58999999999999999999987653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.66  E-value=6.8e-17  Score=124.01  Aligned_cols=123  Identities=12%  Similarity=0.014  Sum_probs=103.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087          101 EKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVD  180 (228)
Q Consensus       101 ~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~  180 (228)
                      ++|.++..+|++++|++.|++++..+|+++.   +++++|.+|+++|++++|+..|++++...|.+++++..+|.++.. 
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-   77 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI---KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-   77 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHT---THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            4789999999999999999999999999998   899999999999999999999999999999999999999999988 


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCchhh-----hhhcCCCChhHHHHHHHhhcc
Q 027087          181 KHALLLAENQFTIATLLDPHYTDLSY-----VKDTKHWPPSLVSSLRHFITL  227 (228)
Q Consensus       181 ~~~~~~A~~~~~~al~l~P~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  227 (228)
                      .|++++|+..|+++++++|++.++++     .....++.++...-+++++++
T Consensus        78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l  129 (150)
T 4ga2_A           78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL  129 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            46999999999999999999998755     334456665544444666543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.66  E-value=5.4e-16  Score=110.00  Aligned_cols=108  Identities=20%  Similarity=0.125  Sum_probs=101.8

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHH
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPE  168 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~  168 (228)
                      ++|+++..++.+|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++|+..|++++...+.  ++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   77 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK---YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD   77 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH
Confidence            36888899999999999999999999999999999999999   9999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 027087          169 VHAALAAALYVDK-HALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       169 ~~~~la~~l~~~~-~~~~~A~~~~~~al~l~P~~~  202 (228)
                      ++..++.++.. . |++++|++.|++++..+|...
T Consensus        78 ~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           78 VWAAKADALRY-IEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHTT-CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999888 5 588999999999999999864

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.66  E-value=1.1e-15  Score=117.73  Aligned_cols=105  Identities=17%  Similarity=0.115  Sum_probs=98.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVEN------------------YKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l------------------~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +.+..+.++|..+++.|+|++|+..|++++++                  +|.+..   +++|+|.++..+|++++|+..
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP---LYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHH---HHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH---HHHHHHHHHHhcCcHHHHHHH
Confidence            45778999999999999999999999999999                  777777   899999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      +++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++.
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCH
Confidence            9999999999999999999999985 599999999999999999987

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.65  E-value=4.6e-15  Score=107.63  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=104.8

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      +.+|+++..++.+|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++|+..+++++...|.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   82 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---YFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA   82 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence            456888999999999999999999999999999999999998   99999999999999999999999999988999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +..+|.++.. .|++++|+..|+++++++|++.....
T Consensus        83 ~~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (131)
T 2vyi_A           83 YGRMGLALSS-LNKHVEAVAYYKKALELDPDNETYKS  118 (131)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHH-hCCHHHHHHHHHHHHhcCccchHHHH
Confidence            9999999888 56999999999999999998876544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.65  E-value=2.2e-15  Score=110.23  Aligned_cols=111  Identities=20%  Similarity=0.127  Sum_probs=103.4

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      .|.+..+++.+|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++|+..+++++...|.++.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   88 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT   88 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH---HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence            5778889999999999999999999999999999999998   9999999999999999999999999998899999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .+|.++.. .|++++|+..|+++++++|++.....
T Consensus        89 ~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~  122 (133)
T 2lni_A           89 RKAAALEA-MKDYTKAMDVYQKALDLDSSCKEAAD  122 (133)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred             HHHHHHHH-HhhHHHHHHHHHHHHHhCCCchHHHH
Confidence            99999888 46899999999999999998876544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=6.5e-15  Score=105.09  Aligned_cols=108  Identities=19%  Similarity=0.150  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      .+..++.+|.++...|++++|+..|++++..+|++..   +++++|.++...|++++|+..+++++...|.++..+..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a   79 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            5678999999999999999999999999999999999   9999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++.. .|++++|+..|+++++++|++.....
T Consensus        80 ~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~  110 (118)
T 1elw_A           80 AALEF-LNRFEEAKRTYEEGLKHEANNPQLKE  110 (118)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHH-HhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99888 56999999999999999998876544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=9.5e-15  Score=126.64  Aligned_cols=128  Identities=16%  Similarity=0.007  Sum_probs=86.4

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      .+..+.++..+.++++.+|++..+++++|.++...|++++|+..|+++++++|+++.   +++++|.++...|++++|+.
T Consensus       216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~  292 (388)
T 1w3b_A          216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAED  292 (388)
T ss_dssp             TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---HHHHHHHHHHHHSCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHH
Confidence            344555666666666666777777777777777777777777777777777777666   67777777777777777777


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .|++++...|.+++.+..++.++.. .|++++|+..|+++++++|++...++
T Consensus       293 ~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~  343 (388)
T 1w3b_A          293 CYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHS  343 (388)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             HHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            7777766666666666666666655 34667777777777777776655433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.64  E-value=5e-15  Score=122.27  Aligned_cols=131  Identities=13%  Similarity=-0.011  Sum_probs=117.2

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH---
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE---  145 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~---  145 (228)
                      ....+..+.|+..+..+++.+|++   ..+++.+|.++..+|++++|+..|+++++++|+++....+++++|.+++.   
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~  104 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP  104 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence            345677899999999999999998   99999999999999999999999999999999876555589999999999   


Q ss_pred             -----cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          146 -----VGDREEAIAEMEDVSISLKGYPEVH-----------------AALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       146 -----~g~~~~A~~~~~~al~~~~~~p~~~-----------------~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                           +|++++|+..|++++...|.++.+.                 +.+|.+++. .|++++|+..|+++++.+|+...
T Consensus       105 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          105 PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCch
Confidence                 9999999999999998888886444                 778998888 56999999999999999998654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=1.3e-15  Score=131.96  Aligned_cols=122  Identities=13%  Similarity=0.082  Sum_probs=110.6

Q ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------chhHHHHHHHHHHHHH
Q 027087           81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF---------------AFSEYARVGRALALYE  145 (228)
Q Consensus        81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~---------------~~~~~a~~~la~~~~~  145 (228)
                      ++..+..+++.+|+++.+++++|.++...|+|++|+..|+++++++|++               ..   +++|+|.++..
T Consensus       132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~  208 (336)
T 1p5q_A          132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA---SHLNLAMCHLK  208 (336)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            3334455567789999999999999999999999999999999999999               47   89999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +|++++|+..|++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++..++.
T Consensus       209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~  268 (336)
T 1p5q_A          209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKT  268 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            99999999999999999999999999999999884 5899999999999999999987654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.64  E-value=9.8e-16  Score=144.52  Aligned_cols=149  Identities=17%  Similarity=0.022  Sum_probs=129.0

Q ss_pred             hhCCCchHHHHHHHHHH--------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAV--------SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALY  144 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al--------~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~  144 (228)
                      ...+..+.|+..+.+++        +.+|++..+++++|.++..+|++++|+..|+++++++|++..   +++++|.++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---LVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---HHHHHHHHHH
Confidence            45566788888999999        999999999999999999999999999999999999999999   9999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhh-----hcCCCChhHHH
Q 027087          145 EVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVK-----DTKHWPPSLVS  219 (228)
Q Consensus       145 ~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~-----~~~~~~~~~~~  219 (228)
                      .+|++++|++.|++++...|.++++++++|.++..+ |++++ ++.|+++++++|++..+++..     .+.++ +..+.
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~  555 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDR-VGAVR  555 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCH-HHHHH
Confidence            999999999999999999999999999999999885 58899 999999999999999876632     22222 33455


Q ss_pred             HHHHhhcc
Q 027087          220 SLRHFITL  227 (228)
Q Consensus       220 ~~~~~~~~  227 (228)
                      .+++++++
T Consensus       556 ~~~~al~l  563 (681)
T 2pzi_A          556 TLDEVPPT  563 (681)
T ss_dssp             HHHTSCTT
T ss_pred             HHHhhccc
Confidence            66666554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=1.6e-14  Score=104.83  Aligned_cols=124  Identities=22%  Similarity=0.170  Sum_probs=114.3

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+.+...+..+++.+|++...++.+|.++...|++++|+..|++++..+|++..   +++++|.++...|++++|+
T Consensus        13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~   89 (136)
T 2fo7_A           13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAI   89 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH---HHHHHHHHHHHhcCHHHHH
Confidence            3355778888889999999999999999999999999999999999999999999998   8999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      ..+++++...+.++..+..++.++.. .|++++|+..|+++++++|+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           90 EYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHHHHHHHHHccCCCC
Confidence            99999988888889999999998887 568999999999999999863

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.64  E-value=1.9e-14  Score=110.31  Aligned_cols=128  Identities=16%  Similarity=0.041  Sum_probs=101.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++|
T Consensus        53 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A           53 VKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN---VRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHH---HHHHHHHHHHHcCcHHHH
Confidence            34566777777777778888888888888888888888888888888888888888877   788888888888888888


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +..+++++...+.++.++..++.++.. .|++++|...|+++++++|++...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          130 IDSFKIALGLRPNEGKVHRAIAFSYEQ-MGRHEEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCchhh
Confidence            888888877777777888888887777 457788888888888888776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.63  E-value=5e-15  Score=128.40  Aligned_cols=134  Identities=16%  Similarity=0.079  Sum_probs=123.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.++..+.++++.+|+++.+++++|.++.+.|++++|+..|+++++++|++..   ++.++|.++...|++++
T Consensus       247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---SLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH---HHHHHHHHHHHcCCHHH
Confidence            345567788888999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      |+..|++++...|.++.++..++.++.. .|++++|+..|+++++++|++..+++..+
T Consensus       324 A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~a~~~lg  380 (388)
T 1w3b_A          324 AVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMG  380 (388)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence            9999999988778888999999998888 46889999999999999999988776544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.63  E-value=6.1e-15  Score=108.17  Aligned_cols=109  Identities=14%  Similarity=0.058  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAAL  173 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~l  173 (228)
                      .+++++|.++...|++++|+..|+++++.+|++.....+++++|.+++..|++++|+..|++++...|.+   +++++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578999999999999999999999999999998222289999999999999999999999999998988   8899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          174 AAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |.++.. .|++++|+..|+++++.+|++.....
T Consensus        83 a~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~  114 (129)
T 2xev_A           83 GLSQYG-EGKNTEAQQTLQQVATQYPGSDAARV  114 (129)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHCCCChHHHH
Confidence            999988 56899999999999999998876543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.63  E-value=1.5e-14  Score=104.01  Aligned_cols=113  Identities=22%  Similarity=0.206  Sum_probs=101.5

Q ss_pred             cChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           91 SRVSD-ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        91 ~~p~~-a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      .+|.+ +..++.+|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++|+..+++++...+.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence            35555 788999999999999999999999999999999998   99999999999999999999999999888899999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      +..++.++.. .|++++|+..|+++++++|++......
T Consensus        80 ~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~  116 (125)
T 1na0_A           80 WYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQN  116 (125)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            9999999988 568999999999999999988776543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=5.6e-15  Score=110.22  Aligned_cols=112  Identities=21%  Similarity=0.119  Sum_probs=103.9

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF---AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      .+++++..++.+|..+...|++++|+..|+++++++|++   ..   +++++|.++...|++++|+..+++++...|.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAV---LHRNRAACHLKLEDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence            467888999999999999999999999999999999997   66   899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          168 EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .+++.+|.++... |++++|+..|+++++++|++.....
T Consensus       100 ~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~  137 (148)
T 2dba_A          100 KALYRRSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQE  137 (148)
T ss_dssp             HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHH
Confidence            9999999999885 5899999999999999999877543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.63  E-value=3.9e-15  Score=134.63  Aligned_cols=130  Identities=15%  Similarity=0.031  Sum_probs=113.2

Q ss_pred             hhCCCc-hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc-----
Q 027087           73 ATYDPL-TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV-----  146 (228)
Q Consensus        73 ~~~~~~-~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~-----  146 (228)
                      ...+.. +.|+..+.++++.+|+++.+++++|.++..+|++++|+..|+++++++|+ ..   +++++|.++..+     
T Consensus       113 ~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~lg~~~~~~~~~~~  188 (474)
T 4abn_A          113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV---SLQNLSMVLRQLQTDSG  188 (474)
T ss_dssp             TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HH---HHHHHHHHHTTCCCSCH
T ss_pred             HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HH---HHHHHHHHHHHhccCCh
Confidence            345566 88999999999999999999999999999999999999999999999998 56   899999999999     


Q ss_pred             ----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----c--CCHHHHHHHHHHHHhcCC---CCCchhh
Q 027087          147 ----GDREEAIAEMEDVSISLKGYPEVHAALAAALYVD-----K--HALLLAENQFTIATLLDP---HYTDLSY  206 (228)
Q Consensus       147 ----g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~-----~--~~~~~A~~~~~~al~l~P---~~~~~~~  206 (228)
                          |++++|+..|++++...|.++.++..+|.++...     .  |++++|+..|+++++++|   ++...++
T Consensus       189 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  262 (474)
T 4abn_A          189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL  262 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence                9999999999999888888899999999988874     0  478999999999999999   7776654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.63  E-value=1.2e-14  Score=115.58  Aligned_cols=125  Identities=22%  Similarity=0.205  Sum_probs=110.6

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|+..+..++  ++ ++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++|
T Consensus        17 ~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~lg~~~~~~~~~~~A   90 (213)
T 1hh8_A           17 ADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---AYFQRGMLYYQTEKYDLA   90 (213)
T ss_dssp             HHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---HHHHHHHHHHHcccHHHH
Confidence            34566777777777764  33 6789999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          153 IAEMEDVSISLKGYP----------------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       153 ~~~~~~al~~~~~~p----------------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +..|++++...+.++                .+++++|.+++. .|++++|+..|+++++++|++...
T Consensus        91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~  157 (213)
T 1hh8_A           91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRHS  157 (213)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred             HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCcccccc
Confidence            999999988777655                899999999988 469999999999999999987543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.62  E-value=4.9e-15  Score=135.97  Aligned_cols=135  Identities=14%  Similarity=-0.010  Sum_probs=111.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.|+..+.++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus        33 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~  109 (568)
T 2vsy_A           33 ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG---IALWLGHALEDAGQAEA  109 (568)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCCHHH
Confidence            345566778888888888888888888888888888888888888888888888888888   88888888888888888


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDK--HALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~--~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      |++.|++++...|.+++++..++.++..++  |++++|++.|+++++.+|++...+..-.
T Consensus       110 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            888888888888888888888888887741  5788888888888888888777655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=1.5e-14  Score=118.51  Aligned_cols=120  Identities=18%  Similarity=0.091  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHhc----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           79 TQAEKDASAAVSS----RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        79 ~~a~~~~~~al~~----~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      +.++..+..+++.    +|+++.+++.+|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|+.
T Consensus        22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~~~~~~A~~   98 (275)
T 1xnf_A           22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---VFNYLGIYLTQAGNFDAAYE   98 (275)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHccCHHHHHH
Confidence            3444444444443    2444555555555555555555555555555555555555   55555555555555555555


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      .|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++.
T Consensus        99 ~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           99 AFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCh
Confidence            5555555555555555555555544 2355555555555555555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.62  E-value=3.5e-14  Score=114.23  Aligned_cols=131  Identities=16%  Similarity=0.058  Sum_probs=112.8

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.++..+..+++.+|++..+++.+|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++
T Consensus        67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~  143 (243)
T 2q7f_A           67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD---LFYMLGTVLVKLEQPKL  143 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHTSCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhccHHH
Confidence            345667788888888888889999999999999999999999999999999999998888   88999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |+..+++++...+.++..+..+|.++... |++++|+..|+++++.+|++...++
T Consensus       144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~  197 (243)
T 2q7f_A          144 ALPYLQRAVELNENDTEARFQFGMCLANE-GMLDEALSQFAAVTEQDPGHADAFY  197 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHH
Confidence            99999999888888888888888888885 4789999999999999988776543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.62  E-value=1.4e-14  Score=116.50  Aligned_cols=134  Identities=16%  Similarity=0.078  Sum_probs=123.5

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++++|++..   +++++|.++...|++++
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE---ARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCCHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHcCCHHH
Confidence            445677888888899999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      |+..|++++...+.++..+..++.++... |++++|+..|+++++++|++...+....
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAYK-ENREKALEMLDKAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence            99999999998899999999999999884 5889999999999999999988765433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2.2e-14  Score=116.08  Aligned_cols=111  Identities=21%  Similarity=0.123  Sum_probs=103.6

Q ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087           84 DASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus        84 ~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      .+..++..+|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|+..|++++...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---GYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            333444489999999999999999999999999999999999999999   99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      |.++.++..+|.++.. .|++++|+..|+++++++
T Consensus       204 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIA-VKEYASALETLDAARTKD  237 (258)
T ss_dssp             TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhC
Confidence            9999999999999988 468999999999999999

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=6.1e-15  Score=124.69  Aligned_cols=128  Identities=13%  Similarity=-0.052  Sum_probs=115.4

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +...+..+.|+..+.++++.+|+++.+++++|.++...|++++|+..|++++..+|++..   ...+.+..+...|+.++
T Consensus       127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~---~~~~~~~~l~~~~~~~~  203 (287)
T 3qou_A          127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY---QGLVAQIELLXQAADTP  203 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH---HHHHHHHHHHHHHTSCH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH---HHHHHHHHHHhhcccCc
Confidence            456677888888999999999999999999999999999999999999999999997665   78888888999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      |+..|++++...|.++++++++|.++.. .|++++|++.|+++++++|++.+
T Consensus       204 a~~~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~  254 (287)
T 3qou_A          204 EIQQLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAAD  254 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGG
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccccc
Confidence            9999999999999999999999999988 56899999999999999999843

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.61  E-value=5.4e-15  Score=133.25  Aligned_cols=122  Identities=12%  Similarity=0.061  Sum_probs=107.5

Q ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------chhHHHHHHHHHHHHH
Q 027087           81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF---------------AFSEYARVGRALALYE  145 (228)
Q Consensus        81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~---------------~~~~~a~~~la~~~~~  145 (228)
                      +...+..+++.+|+++..++++|.++.++|+|++|+..|+++++++|++               ..   +++|+|.+|.+
T Consensus       253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~  329 (457)
T 1kt0_A          253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA---AFLNLAMCYLK  329 (457)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            3334445567788999999999999999999999999999999999998               46   89999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +|++++|+..|++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++..++.
T Consensus       330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~  389 (457)
T 1kt0_A          330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARL  389 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999999999999999985 5999999999999999999998755

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.61  E-value=3.2e-14  Score=130.57  Aligned_cols=125  Identities=17%  Similarity=0.022  Sum_probs=104.3

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      .+.|+..+.++++.+|+++.+++++|.++...|++++|++.|+++++++|++..   +++++|.++..+|++++|++.|+
T Consensus         5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---AVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHH
Confidence            456777888899999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +++...|.+++++.++|.++.. .|++++|++.|+++++++|++...++
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~  129 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALED-AGQAEAAAAAYTRAHQLLPEEPYITA  129 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999999988 56899999999999999999887644

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.60  E-value=1.2e-14  Score=124.86  Aligned_cols=125  Identities=16%  Similarity=0.044  Sum_probs=115.7

Q ss_pred             CCCchHHHHHHHHHHhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVS--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .+..+.++..+..+++.+|+  ++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A  266 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS---LWNRLGATLANGDRSEEA  266 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHH
Confidence            44467788888999999999  9999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +..|++++...|.++.++..+|.++... |++++|+..|+++++++|+...
T Consensus       267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          267 VEAYTRALEIQPGFIRSRYNLGISCINL-GAYREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccCC
Confidence            9999999999999999999999999885 5889999999999999998544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=6.1e-15  Score=133.33  Aligned_cols=129  Identities=15%  Similarity=0.067  Sum_probs=119.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAI---------GDFNKALQYFTLVVENYKDFAFSEYARVGRALAL  143 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~---------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~  143 (228)
                      ...+..+.|+..+.++++++|+ ..+++++|.++...         |++++|+..|+++++++|++..   +++++|.++
T Consensus       148 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~  223 (474)
T 4abn_A          148 WKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR---SWYILGNAY  223 (474)
T ss_dssp             HHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Confidence            3456677888888889999999 69999999999999         9999999999999999999999   999999999


Q ss_pred             HHc--------CCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          144 YEV--------GDREEAIAEMEDVSISLK---GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       144 ~~~--------g~~~~A~~~~~~al~~~~---~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..+        |++++|+..|++++...|   .++.+++++|.++.. .|++++|++.|+++++++|++..++.
T Consensus       224 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~  296 (474)
T 4abn_A          224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQ  296 (474)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999        999999999999999999   899999999999988 46999999999999999999987644

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.60  E-value=3.6e-14  Score=107.74  Aligned_cols=122  Identities=16%  Similarity=0.019  Sum_probs=75.2

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++|+
T Consensus        25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~a~~~~~~~~~~~A~  101 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAASNMALGKFRAAL  101 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhccHHHHH
Confidence            4455566666666666666666666666666666666666666666666666666666   6666666666666666666


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCC
Q 027087          154 AEMEDVSISLKGYPEVHAALAAA--LYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~--l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      ..|++++...|.++..+..++.+  +.. .|++++|+..++++..+.+
T Consensus       102 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A          102 RDYETVVKVKPHDKDAKMKYQECNKIVK-QKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHcccchHHHhc
Confidence            66666666666666555333332  444 2456666666666655443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.60  E-value=2.4e-14  Score=109.80  Aligned_cols=129  Identities=16%  Similarity=0.046  Sum_probs=118.6

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++.+|++..   ++.++|.++...|++++|+
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~   96 (186)
T 3as5_A           20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---VATVLGLTYVQVQKYDLAV   96 (186)
T ss_dssp             HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCHHHHH
Confidence            3455677888888888999999999999999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..+++++...+.++..+..+|.++.. .|++++|+..|+++++.+|++...++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~  148 (186)
T 3as5_A           97 PLLIKVAEANPINFNVRFRLGVALDN-LGRFDEAIDSFKIALGLRPNEGKVHR  148 (186)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCccchHHHH
Confidence            99999999889999999999999888 56899999999999999998876544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.60  E-value=1.1e-14  Score=112.57  Aligned_cols=93  Identities=10%  Similarity=-0.084  Sum_probs=87.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..+.|+..+.++++++|+++.+|+++|.++..+|+|++|+..|+++++++|+++.   +++++|.+|..+|++++
T Consensus        46 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~---~~~~lg~~~~~lg~~~e  122 (151)
T 3gyz_A           46 FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT---PVFHTGQCQLRLKAPLK  122 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHcCCHHH
Confidence            456678899999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH
Q 027087          152 AIAEMEDVSISLKGYP  167 (228)
Q Consensus       152 A~~~~~~al~~~~~~p  167 (228)
                      |+..|++++...+..+
T Consensus       123 A~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          123 AKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHhCCCHH
Confidence            9999999977666544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.59  E-value=5.1e-14  Score=111.58  Aligned_cols=124  Identities=15%  Similarity=0.065  Sum_probs=63.9

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc-CCHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV-GDREEAIA  154 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~-g~~~~A~~  154 (228)
                      +..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++++|++..   ++.++|.++... |++++|+.
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~~A~~   98 (225)
T 2vq2_A           22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE---INNNYGWFLCGRLNRPAESMA   98 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhcCcHHHHHH
Confidence            33444555555555555555555555555555555555555555555555555555   555555555555 55555555


Q ss_pred             HHHHHHH--hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          155 EMEDVSI--SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       155 ~~~~al~--~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      .+++++.  ..+.++..+..+|.++.. .|++++|+..|+++++.+|++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~  148 (225)
T 2vq2_A           99 YFDKALADPTYPTPYIANLNKGICSAK-QGQFGLAEAYLKRSLAAQPQFPP  148 (225)
T ss_dssp             HHHHHHTSTTCSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHcCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCch
Confidence            5555533  112223445555554444 23555555555555555555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.59  E-value=3.4e-14  Score=112.78  Aligned_cols=112  Identities=19%  Similarity=0.165  Sum_probs=102.5

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc----------------hhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA----------------FSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~----------------~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      ..++.+..++++|..+...|+|++|+..|++++++.|+++                .   +++++|.++..+|++++|+.
T Consensus        33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~  109 (198)
T 2fbn_A           33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS---CNLNLATCYNKNKDYPKAID  109 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH---HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH---HHHHHHHHHHHhcCHHHHHH
Confidence            3456778899999999999999999999999999999987                6   89999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .+++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++...+.
T Consensus       110 ~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~  160 (198)
T 2fbn_A          110 HASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRN  160 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            99999999999999999999999885 5899999999999999999877644

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.2e-14  Score=115.08  Aligned_cols=131  Identities=15%  Similarity=0.091  Sum_probs=119.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD-------ALELLEKGRELQAIGDFNKALQYFTLVVE--------------------  124 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~-------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~--------------------  124 (228)
                      ....+..+.++..+..+++.+|++       +.+++.+|.++...|++++|+..|+++++                    
T Consensus        48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~  127 (258)
T 3uq3_A           48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK  127 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence            456677889999999999988887       89999999999999999999999999999                    


Q ss_pred             ------hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          125 ------NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       125 ------l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                            .+|++..   +++++|.++...|++++|+..|++++...|.++..+..+|.++.. .|++++|+..|+++++++
T Consensus       128 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          128 AEAEAYVNPEKAE---EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHCCHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCcchHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhC
Confidence                  5555666   899999999999999999999999999999999999999999988 569999999999999999


Q ss_pred             CCCCchhh
Q 027087          199 PHYTDLSY  206 (228)
Q Consensus       199 P~~~~~~~  206 (228)
                      |++...++
T Consensus       204 ~~~~~~~~  211 (258)
T 3uq3_A          204 PNFVRAYI  211 (258)
T ss_dssp             TTCHHHHH
T ss_pred             HHHHHHHH
Confidence            99887655

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.59  E-value=4.4e-14  Score=121.25  Aligned_cols=127  Identities=11%  Similarity=0.019  Sum_probs=74.5

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------------------
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD-------------------------  128 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-------------------------  128 (228)
                      ..+..+.|+..+.++++.+|++..+++++|.++...|++++|+..|+++++++|+                         
T Consensus       111 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~  190 (365)
T 4eqf_A          111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS  190 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence            3444555555555566666666666666666666666655555555555554433                         


Q ss_pred             ---------------------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Q 027087          129 ---------------------FAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLA  187 (228)
Q Consensus       129 ---------------------~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A  187 (228)
                                           ++.   +++++|.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|
T Consensus       191 g~~~~A~~~~~~al~~~p~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A  266 (365)
T 4eqf_A          191 SVLEGVKELYLEAAHQNGDMIDPD---LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDRSEEA  266 (365)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCccCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence                                 333   556666666666666666666666655556666666666665555 3456666


Q ss_pred             HHHHHHHHhcCCCCCch
Q 027087          188 ENQFTIATLLDPHYTDL  204 (228)
Q Consensus       188 ~~~~~~al~l~P~~~~~  204 (228)
                      +..|+++++++|++...
T Consensus       267 ~~~~~~al~~~p~~~~~  283 (365)
T 4eqf_A          267 VEAYTRALEIQPGFIRS  283 (365)
T ss_dssp             HHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHhcCCCchHH
Confidence            66666666666665544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.58  E-value=1.3e-13  Score=104.66  Aligned_cols=108  Identities=18%  Similarity=0.139  Sum_probs=101.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL  173 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l  173 (228)
                      +.+..++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|+..+++++...|.++.++..+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   87 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---YYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            45678999999999999999999999999999999999   999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          174 AAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      |.++.. .|++++|+..|+++++++|++....
T Consensus        88 a~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~  118 (166)
T 1a17_A           88 AASNMA-LGKFRAALRDYETVVKVKPHDKDAK  118 (166)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHH-hccHHHHHHHHHHHHHhCCCCHHHH
Confidence            999988 4699999999999999999988765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.58  E-value=3.9e-14  Score=118.67  Aligned_cols=126  Identities=16%  Similarity=0.050  Sum_probs=72.7

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------CCCchhHHHHHHHHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY---------KDFAFSEYARVGRALALYE  145 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~---------P~~~~~~~a~~~la~~~~~  145 (228)
                      .+..+.+...+..+++.+|+++.+++++|.++...|++++|+..|++++++.         |.+..   +++++|.++..
T Consensus       172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~la~~~~~  248 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP---LLNNLGHVCRK  248 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH---HHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH---HHHHHHHHHHH
Confidence            3444555555555555566666666666666666666666666666665554         44444   55566666666


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .|++++|+..|++++...|.++.++..+|.++... |++++|++.|+++++++|++...
T Consensus       249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~  306 (330)
T 3hym_B          249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM-GNFENAVDYFHTALGLRRDDTFS  306 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCHHHHHHHHHTTTTTCSCCHHH
T ss_pred             hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh-ccHHHHHHHHHHHHccCCCchHH
Confidence            66666666666666555555555555566555553 35566666666666666655544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.58  E-value=5.1e-14  Score=119.48  Aligned_cols=130  Identities=13%  Similarity=0.043  Sum_probs=80.6

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKG--RELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG--~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      .+.+..+.|...+.++++.+|++....+..|  .++...|++++|+..|+++++.+|+++.   +++++|.++..+|+++
T Consensus       141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~  217 (291)
T 3mkr_A          141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL---LLNGQAACHMAQGRWE  217 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH---HHHHHHHHHHHTTCHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHH
Confidence            3455566666666666666666543333222  2223346677777777777766676666   6677777777777777


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      +|+..|++++...|.+++++.+++.++...|+..+++.+.++++++++|+++...
T Consensus       218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            7777777776666666777777776666644332345566667777777666543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.58  E-value=4.5e-14  Score=102.50  Aligned_cols=104  Identities=15%  Similarity=0.080  Sum_probs=96.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY------  166 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------  166 (228)
                      |+.+..++.+|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++|+..+++++...+.+      
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence            356788999999999999999999999999999999998   99999999999999999999999998887776      


Q ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          167 -PEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       167 -p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                       +.++..+|.++.. .|++++|+..|+++++++|+
T Consensus        78 ~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           78 IAKAYARIGNSYFK-EEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCC
Confidence             7889999999888 56999999999999999984

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.58  E-value=4.5e-14  Score=116.45  Aligned_cols=134  Identities=13%  Similarity=0.013  Sum_probs=117.2

Q ss_pred             HhhCCCchHHHHHHHHHHhcCh---hhHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhcCCCchhHHHH----
Q 027087           72 AATYDPLTQAEKDASAAVSSRV---SDALELLEKGRELQA--------IGDFNKALQYFTLVVENYKDFAFSEYAR----  136 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p---~~a~a~~~lG~~~~~--------~g~~~~Ai~~~~~Al~l~P~~~~~~~a~----  136 (228)
                      ....+..+.|+..+..+++.+|   ....+++.+|.++..        .|++++|+..|+++++.+|++.....+.    
T Consensus        62 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~  141 (261)
T 3qky_A           62 YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR  141 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH
Confidence            4567888999999999999877   457899999999999        9999999999999999999998722233    


Q ss_pred             ----------HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhc---------CCHHHHHHHHHHH
Q 027087          137 ----------VGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAALAAALYVDK---------HALLLAENQFTIA  194 (228)
Q Consensus       137 ----------~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~la~~l~~~~---------~~~~~A~~~~~~a  194 (228)
                                +++|.+|...|++++|+..|++++...|.+   +++++.+|.++..+|         |++++|+..|+++
T Consensus       142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~  221 (261)
T 3qky_A          142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL  221 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence                      899999999999999999999998888874   578999999998752         6899999999999


Q ss_pred             HhcCCCCCchh
Q 027087          195 TLLDPHYTDLS  205 (228)
Q Consensus       195 l~l~P~~~~~~  205 (228)
                      ++.+|++....
T Consensus       222 ~~~~p~~~~~~  232 (261)
T 3qky_A          222 LQIFPDSPLLR  232 (261)
T ss_dssp             HHHCTTCTHHH
T ss_pred             HHHCCCChHHH
Confidence            99999987643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=7.4e-14  Score=102.62  Aligned_cols=104  Identities=16%  Similarity=0.129  Sum_probs=95.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.|+..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus        14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~   90 (126)
T 3upv_A           14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR---AYIRKATAQIAVKEYAS   90 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHhCHHH
Confidence            345677889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhc------CCCHHHHHHHHHHHH
Q 027087          152 AIAEMEDVSISL------KGYPEVHAALAAALY  178 (228)
Q Consensus       152 A~~~~~~al~~~------~~~p~~~~~la~~l~  178 (228)
                      |+..|++++...      |.+++++..+..+..
T Consensus        91 A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           91 ALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            999999998888      777777777666543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.58  E-value=5.6e-14  Score=114.17  Aligned_cols=127  Identities=16%  Similarity=0.088  Sum_probs=72.4

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE--NYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~--l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++  .+|++..   +++++|.++...|++++
T Consensus        83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~  159 (252)
T 2ho1_A           83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR---VFENLGLVSLQMKKPAQ  159 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHH---HHHHHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHH---HHHHHHHHHHHcCCHHH
Confidence            344455555555555555555555566666666666666666666666555  4444444   55566666666666666


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      |+..|++++...+.++..+..++.++.. .|++++|+..|+++++.+|++...
T Consensus       160 A~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~  211 (252)
T 2ho1_A          160 AKEYFEKSLRLNRNQPSVALEMADLLYK-EREYVPARQYYDLFAQGGGQNARS  211 (252)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHH
Confidence            6666666655555555555555555555 335566666666666655555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.58  E-value=1.4e-14  Score=122.24  Aligned_cols=106  Identities=18%  Similarity=0.090  Sum_probs=99.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~  172 (228)
                      |+++..++++|..+...|+|++|+..|+++++++|++..   +++++|.++..+|++++|+..|++++...|.++.+++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            467889999999999999999999999999999999999   99999999999999999999999998888888999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          173 LAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      +|.++.. .|++++|+..|+++++++|++.
T Consensus        78 lg~~~~~-~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           78 LGQCQLE-MESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHhCccch
Confidence            9999988 4589999999999999999774

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.57  E-value=1.9e-14  Score=112.36  Aligned_cols=127  Identities=13%  Similarity=-0.066  Sum_probs=110.2

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHcCCHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALAL-YEVGDRE  150 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~-~~~g~~~  150 (228)
                      ....+..+.++..+.++++.+|+++.+++++|.++...|++++|+..|+++++++| ++.   .+..++.+. ...++..
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~---~~~~~~~~~~~~~~~~~   91 (176)
T 2r5s_A           16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS---YKSLIAKLELHQQAAES   91 (176)
T ss_dssp             HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---HHHHHHHHHHHHHHTSC
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---HHHHHHHHHHHhhcccc
Confidence            34556788899999999999999999999999999999999999999999999999 776   555556443 3334555


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +|+..|++++...|.++++++.+|.++.. .|++++|+..|+++++++|++.+
T Consensus        92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~  143 (176)
T 2r5s_A           92 PELKRLEQELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLGAQD  143 (176)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTTTT
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccCh
Confidence            78999999999999999999999999988 56999999999999999998754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.57  E-value=5.7e-14  Score=119.98  Aligned_cols=123  Identities=18%  Similarity=0.064  Sum_probs=115.2

Q ss_pred             CCCchHHHHHHHHHHhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVS--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .+..+.++..+..+++.+|+  ++..++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---LWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---HHHHHHHHHHHcCCHHHH
Confidence            34456778888899999999  8999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      +..|++++...|.++.++..+|.++... |++++|+..|+++++++|++
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999885 58999999999999999987

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.57  E-value=1.9e-14  Score=118.04  Aligned_cols=130  Identities=21%  Similarity=0.152  Sum_probs=103.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG  147 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g  147 (228)
                      ....+..+.++..+..+++ .+++    +.+++++|.++...|++++|+..|+++++++|++..   ++.++|.++...|
T Consensus        47 ~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~  122 (272)
T 3u4t_A           47 YYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---MYGQIGSYFYNKG  122 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---HHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---HHHHHHHHHHHcc
Confidence            4566777788888888887 3333    445888888888888888888888888888888888   8888888888888


Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          148 DREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       148 ~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++++|+..|++++...|.++..+..+|...+..+ ++++|+..|+++++++|++...++
T Consensus       123 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~  180 (272)
T 3u4t_A          123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-EYVKADSSFVKVLELKPNIYIGYL  180 (272)
T ss_dssp             CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCccchHHHH
Confidence            8888888888887777777888888884344423 888888888888888888876544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.56  E-value=7.1e-14  Score=117.03  Aligned_cols=130  Identities=14%  Similarity=0.088  Sum_probs=108.5

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ...+..+.+...+..+++.+|+++.+++.+|.++...| ++++|+..|+++++++|++..   +++++|.++...|++++
T Consensus        67 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~  143 (330)
T 3hym_B           67 VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP---AWIAYGHSFAVESEHDQ  143 (330)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH---HHHHHHHHHHHHTCHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHccCHHH
Confidence            44566777888888888888888888888888888888 888888888888888888888   88888888888888888


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |+..|++++...|.++..+..+|.++.. .|++++|+..|+++++++|++...+.
T Consensus       144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~  197 (330)
T 3hym_B          144 AMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSKLAERFFSQALSIAPEDPFVMH  197 (330)
T ss_dssp             HHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCChHHHH
Confidence            8888888888778777888888888877 45888888888888888888766543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.56  E-value=1.2e-13  Score=112.10  Aligned_cols=129  Identities=16%  Similarity=0.004  Sum_probs=113.2

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|+
T Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~  125 (252)
T 2ho1_A           49 QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---VLNNYGGFLYEQKRYEEAY  125 (252)
T ss_dssp             HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---HHHHHHHHHHHHhHHHHHH
Confidence            3455677888889999999999999999999999999999999999999999999988   8999999999999999999


Q ss_pred             HHHHHHHH--hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          154 AEMEDVSI--SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       154 ~~~~~al~--~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..|++++.  ..+.++.++..+|.++.. .|++++|+..|+++++++|++...++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~  179 (252)
T 2ho1_A          126 QRLLEASQDTLYPERSRVFENLGLVSLQ-MKKPAQAKEYFEKSLRLNRNQPSVAL  179 (252)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHHHHhCccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcccHHHHH
Confidence            99999965  444556888889998888 46899999999999999998876544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.56  E-value=7.9e-15  Score=114.27  Aligned_cols=92  Identities=20%  Similarity=0.027  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR----------EEAIAEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      +.|++|++.|+++++++|++++   +++++|.++..+|++          ++|+..|++++...|.++++++++|.++..
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~ae---a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDAD---NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4444444444444444444444   444444444444432          244444444444444444444444444444


Q ss_pred             hc----------CCHHHHHHHHHHHHhcCCCCCch
Q 027087          180 DK----------HALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       180 ~~----------~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ++          |++++|+++|++|++++|++...
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            32          47788888888888888876543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.56  E-value=9e-14  Score=110.13  Aligned_cols=131  Identities=15%  Similarity=0.053  Sum_probs=115.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHHHHcCC
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAI-GDFNKALQYFTLVVE--NYKDFAFSEYARVGRALALYEVGD  148 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~-g~~~~Ai~~~~~Al~--l~P~~~~~~~a~~~la~~~~~~g~  148 (228)
                      ....+..+.+...+..+++.+|++...++++|.++... |++++|+..|+++++  .+|++..   +++++|.++...|+
T Consensus        52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~  128 (225)
T 2vq2_A           52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI---ANLNKGICSAKQGQ  128 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHH---HHHHHHHHHHHTTC
T ss_pred             HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHH---HHHHHHHHHHHcCC
Confidence            34567778888889999999999999999999999999 999999999999999  5555566   89999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCchhh
Q 027087          149 REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP-HYTDLSY  206 (228)
Q Consensus       149 ~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P-~~~~~~~  206 (228)
                      +++|+..|++++...|.++..+..++.++... |++++|+..|+++++++| ++....+
T Consensus       129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~  186 (225)
T 2vq2_A          129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQLGDADYYFKKYQSRVEVLQADDLL  186 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            99999999999888888999999999988884 589999999999999999 7766544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.56  E-value=1.3e-13  Score=119.27  Aligned_cols=122  Identities=16%  Similarity=-0.015  Sum_probs=111.3

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD---------------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYAR  136 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~---------------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~  136 (228)
                      ....+..+.|+..+.++++++|++               ..+++++|.++.++|++++|+..|+++++++|++..   ++
T Consensus       157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~  233 (336)
T 1p5q_A          157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK---GL  233 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HH
Confidence            345577889999999999999998               799999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 027087          137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLA-ENQFTIATLL  197 (228)
Q Consensus       137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A-~~~~~~al~l  197 (228)
                      +++|.+|..+|++++|+..|++++...|.++.++..++.++..++ ++++| ...|++++..
T Consensus       234 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR-RQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998865 77888 6677877754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.55  E-value=7.8e-14  Score=113.23  Aligned_cols=129  Identities=11%  Similarity=-0.051  Sum_probs=111.5

Q ss_pred             hhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----  145 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----  145 (228)
                      ...+..+.|+..+..+++.+|++   ..+++++|.++...|++++|+..|+++++++|++..+.++++.+|.++..    
T Consensus        15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~   94 (225)
T 2yhc_A           15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS   94 (225)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence            34567888999999999988876   47899999999999999999999999999999998766689999999986    


Q ss_pred             --------------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 027087          146 --------------VGDREEAIAEMEDVSISLKGYPEVH-----------------AALAAALYVDKHALLLAENQFTIA  194 (228)
Q Consensus       146 --------------~g~~~~A~~~~~~al~~~~~~p~~~-----------------~~la~~l~~~~~~~~~A~~~~~~a  194 (228)
                                    .|++++|+..|++++...|.++.+.                 ..+|.+++. .|++++|+..|+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~  173 (225)
T 2yhc_A           95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGM  173 (225)
T ss_dssp             -------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHH
Confidence                          6799999999999988778776332                 456777777 46999999999999


Q ss_pred             HhcCCCCC
Q 027087          195 TLLDPHYT  202 (228)
Q Consensus       195 l~l~P~~~  202 (228)
                      ++.+|++.
T Consensus       174 l~~~p~~~  181 (225)
T 2yhc_A          174 LRDYPDTQ  181 (225)
T ss_dssp             HHHSTTSH
T ss_pred             HHHCcCCC
Confidence            99999976

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.55  E-value=1.9e-13  Score=115.37  Aligned_cols=126  Identities=21%  Similarity=0.167  Sum_probs=71.1

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA  154 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~  154 (228)
                      .+..+.|+..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++..   +++.+|.++...|++++|+.
T Consensus        16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~   92 (359)
T 3ieg_A           16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA---ARLQRGHLLLKQGKLDEAED   92 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch---HHHHHHHHHHHcCChHHHHH
Confidence            344555555566666666666666666666666666666666666666666666655   56666666666666666666


Q ss_pred             HHHHHHHhcC---CCHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          155 EMEDVSISLK---GYPEVHAAL------------AAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       155 ~~~~al~~~~---~~p~~~~~l------------a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .|++++...|   .+++.+..+            +.++.. .|++++|+..|+++++.+|++...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~  156 (359)
T 3ieg_A           93 DFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD-GADYTAAITFLDKILEVCVWDAEL  156 (359)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCchHH
Confidence            6666644444   444444444            233333 345555555555555555555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.55  E-value=1.5e-13  Score=105.20  Aligned_cols=96  Identities=17%  Similarity=0.074  Sum_probs=89.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.|+..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|+++.   +++++|.++..+|++++
T Consensus        31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~~~~~~g~~~~  107 (148)
T 2vgx_A           31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR---FPFHAAECLLQXGELAE  107 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHcCCHHH
Confidence            345677889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~  170 (228)
                      |+..|++++...|.+|+..
T Consensus       108 A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A          108 AESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             HHHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHHHHCcCCCcch
Confidence            9999999999888887543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.54  E-value=1.2e-13  Score=106.37  Aligned_cols=105  Identities=15%  Similarity=0.036  Sum_probs=95.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.|+..+..+++++|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus        21 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~   97 (164)
T 3sz7_A           21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK---AWSRLGLARFDMADYKG   97 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHH
Confidence            345577889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      |+..|++++...|.+++.+..++.....
T Consensus        98 A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           98 AKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999998876666654433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=7.8e-13  Score=108.18  Aligned_cols=128  Identities=20%  Similarity=0.075  Sum_probs=115.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.|...+..+++.+|++..+++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++
T Consensus        53 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~g~~~~  129 (275)
T 1xnf_A           53 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AHLNRGIALYYGGRDKL  129 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH---HHHHHHHHHHHhccHHH
Confidence            446677889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      |+..|++++...|.++.....++.. .. .|++++|+..|++++..+|++...
T Consensus       130 A~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~~A~~~~~~~~~~~~~~~~~  180 (275)
T 1xnf_A          130 AQDDLLAFYQDDPNDPFRSLWLYLA-EQ-KLDEKQAKEVLKQHFEKSDKEQWG  180 (275)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH-HH-HHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHH-HH-hcCHHHHHHHHHHHHhcCCcchHH
Confidence            9999999999888888666555544 34 368999999999999999987664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.54  E-value=7e-14  Score=114.68  Aligned_cols=133  Identities=8%  Similarity=-0.021  Sum_probs=112.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHcCCHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-EYARVGRALALYEVGDREE  151 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-~~a~~~la~~~~~~g~~~~  151 (228)
                      ...+..+.|+..+..+++.+|++..+++.+|.++...|++++|+..|+++++ .|++... ..+++++|.++...|++++
T Consensus        14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~   92 (272)
T 3u4t_A           14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSL   92 (272)
T ss_dssp             HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHH
Confidence            3456678888889999999999999999999999999999999999999998 5544441 2258899999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      |+..|++++...|.+++++..+|.++.. .|++++|+..|+++++++|++...++.
T Consensus        93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~  147 (272)
T 3u4t_A           93 AIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRPTTTDPKVFYE  147 (272)
T ss_dssp             HHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCSSCCCHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhcCCCcHHHHHH
Confidence            9999999988888888999999998888 458999999999999999988876553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.54  E-value=2.1e-13  Score=115.73  Aligned_cols=130  Identities=10%  Similarity=-0.043  Sum_probs=105.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRA--LALYEVGDREEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~p~~~  170 (228)
                      |++..+++.+|.++.++|++++|++.|+++++.+|++..   .....+  .++...|++++|+..|++++...|.++.++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~---~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~  203 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL---TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL  203 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH---HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence            788899999999999999999999999999999999764   333333  233345899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh-----hhcCCCChhHHHHHHHhhc
Q 027087          171 AALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV-----KDTKHWPPSLVSSLRHFIT  226 (228)
Q Consensus       171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  226 (228)
                      +++|.++.. .|++++|++.|+++++++|++++++..     ..+.++.+....-++++++
T Consensus       204 ~~la~~~~~-~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          204 NGQAACHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999988 469999999999999999999987542     2334454445555566554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.54  E-value=1.3e-13  Score=104.02  Aligned_cols=98  Identities=18%  Similarity=0.061  Sum_probs=90.5

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.|+..+..++..+|+++.+++++|.++...|++++|+..|+++++++|+++.   +++++|.++..+|++++
T Consensus        28 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~  104 (142)
T 2xcb_A           28 QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR---FPFHAAECHLQLGDLDG  104 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHcCCHHH
Confidence            345577889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~  172 (228)
                      |+..|++++...|.+|+....
T Consensus       105 A~~~~~~al~~~p~~~~~~~~  125 (142)
T 2xcb_A          105 AESGFYSARALAAAQPAHEAL  125 (142)
T ss_dssp             HHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHhCCCCcchHHH
Confidence            999999999888888755443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.54  E-value=1.8e-13  Score=114.36  Aligned_cols=121  Identities=17%  Similarity=0.046  Sum_probs=113.8

Q ss_pred             CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087           77 PLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM  156 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~  156 (228)
                      ..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++.+|++..   ++.++|.++...|++++|+..|
T Consensus       153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---LWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHH
Confidence            3567788888899999999999999999999999999999999999999999999   9999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          157 EDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       157 ~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      ++++...|.++.++..+|.++.. .|++++|+..|+++++++|+.
T Consensus       230 ~~a~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          230 NRALDINPGYVRVMYNMAVSYSN-MSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcc
Confidence            99999889999999999999988 568999999999999999983

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.54  E-value=1.8e-14  Score=130.69  Aligned_cols=131  Identities=15%  Similarity=0.047  Sum_probs=115.0

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .+.+..+.|+..+.++++.+|+++.+++++|.++.++|++++|+..|+++++++|++..   +++++|.+|..+|++++|
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHHTCHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHH--HHHhcCCHHHHHHHHH-----------HHHhcCCCCCchhhh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAA--LYVDKHALLLAENQFT-----------IATLLDPHYTDLSYV  207 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~--l~~~~~~~~~A~~~~~-----------~al~l~P~~~~~~~~  207 (228)
                      ++.|++++...|.+++++..++.+  +.. .|++++|++.++           ++++++|++...++.
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  160 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVK-QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE  160 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHH-HHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence            999999999999998898888887  666 458999999999           999999988776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.53  E-value=5.2e-13  Score=113.96  Aligned_cols=86  Identities=15%  Similarity=-0.046  Sum_probs=53.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|+..+..+++.+|++..+++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|
T Consensus        75 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~g~~~~A  151 (368)
T 1fch_A           75 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT---ALMALAVSFTNESLQRQA  151 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCCHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666   566666666666666655


Q ss_pred             HHHHHHHHH
Q 027087          153 IAEMEDVSI  161 (228)
Q Consensus       153 ~~~~~~al~  161 (228)
                      +..|++++.
T Consensus       152 ~~~~~~~~~  160 (368)
T 1fch_A          152 CEILRDWLR  160 (368)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.53  E-value=7.7e-14  Score=101.86  Aligned_cols=95  Identities=19%  Similarity=0.199  Sum_probs=82.3

Q ss_pred             CchHHHHHHHHHHhc---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           77 PLTQAEKDASAAVSS---RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        77 ~~~~a~~~~~~al~~---~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+.|+..+.++++.   +|+++.+++++|.++..+|++++|+..|+++++++|+++.   +++++|.++..+|++++|+
T Consensus         5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA---LRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHcCCHHHHH
Confidence            345677788889988   6999999999999999999999999999999999999998   8999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHH
Q 027087          154 AEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la  174 (228)
                      ..|++++...|.+++......
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHH
Confidence            999999888888887654333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.52  E-value=9.5e-15  Score=106.74  Aligned_cols=94  Identities=14%  Similarity=0.117  Sum_probs=83.6

Q ss_pred             HcCCHHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Q 027087          108 AIGDFNKALQYFTLVVEN---YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAL  184 (228)
Q Consensus       108 ~~g~~~~Ai~~~~~Al~l---~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~  184 (228)
                      .+|++++|+..|++++++   +|++..   +++++|.++..+|++++|+..|++++...|.++++++.+|.++... |++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~   77 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAE---CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-GRY   77 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCH
Confidence            469999999999999999   688887   9999999999999999999999999999999999999999999985 589


Q ss_pred             HHHHHHHHHHHhcCCCCCchh
Q 027087          185 LLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       185 ~~A~~~~~~al~l~P~~~~~~  205 (228)
                      ++|+..|+++++++|++....
T Consensus        78 ~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHH
Confidence            999999999999999987753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.52  E-value=2.3e-14  Score=124.20  Aligned_cols=127  Identities=13%  Similarity=0.043  Sum_probs=79.9

Q ss_pred             hCCCchHHHHHHHHHHhcChhhH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDA-----------------LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYAR  136 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a-----------------~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~  136 (228)
                      +.+..+.|+..+..+++.+|++.                 .+++++|.++.++|+|++|+..|+++++++|++..   ++
T Consensus       191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~  267 (338)
T 2if4_A          191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK---AL  267 (338)
T ss_dssp             SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH---HH
T ss_pred             hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Confidence            45668889999999999999887                 48999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +++|.+|..+|++++|+..|++++...|.++.++..++.+.....+..+++...|++++..+|++..
T Consensus       268 ~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          268 FRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            9999999999999999999999988888888899999988666667889999999999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.52  E-value=4.9e-14  Score=109.78  Aligned_cols=96  Identities=16%  Similarity=0.012  Sum_probs=85.7

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDF----------NKALQYFTLVVENYKDFAFSEYARVGRALAL  143 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~----------~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~  143 (228)
                      ++...+.++..+..+++++|+++++|+++|.++...|++          ++|+..|++|++++|++.+   +++++|.+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---AVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH---HHHHHHHHH
Confidence            344567888889999999999999999999999999875          5999999999999999999   999999999


Q ss_pred             HHcC-----------CHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087          144 YEVG-----------DREEAIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus       144 ~~~g-----------~~~~A~~~~~~al~~~~~~p~~~~~  172 (228)
                      ..+|           ++++|+++|++++...|.++....+
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a  130 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  130 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9885           8999999999999998888755443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.52  E-value=7.6e-14  Score=103.20  Aligned_cols=92  Identities=11%  Similarity=-0.038  Sum_probs=82.4

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..+.|+..+.++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..   +++++|.++...|++++
T Consensus        27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---~~~~la~~~~~~g~~~~  103 (121)
T 1hxi_A           27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA---VHAALAVSHTNEHNANA  103 (121)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHH
Confidence            345677889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 027087          152 AIAEMEDVSISLKGY  166 (228)
Q Consensus       152 A~~~~~~al~~~~~~  166 (228)
                      |+..|++++...|.+
T Consensus       104 A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          104 ALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHhCcCC
Confidence            999999996555544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.51  E-value=8.5e-14  Score=106.96  Aligned_cols=105  Identities=13%  Similarity=0.000  Sum_probs=93.7

Q ss_pred             HhhCCCchHHHHHHHHHHhc------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH
Q 027087           72 AATYDPLTQAEKDASAAVSS------------------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE  133 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~------------------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~  133 (228)
                      ..+.+..+.|+..+..++..                  +|.+..+++++|.++..+|+|++|+..++++++++|++..  
T Consensus        21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~--   98 (162)
T 3rkv_A           21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK--   98 (162)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH--
Confidence            34556788899999999987                  8888899999999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 027087          134 YARVGRALALYEVGDREEAIAEMEDVSISLKGYP-EVHAALAAALYV  179 (228)
Q Consensus       134 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-~~~~~la~~l~~  179 (228)
                       +++++|.++..+|++++|+..|++++...|.++ .+...++.+...
T Consensus        99 -a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           99 -ALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence             999999999999999999999999999999888 556666665444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.50  E-value=3.2e-13  Score=120.96  Aligned_cols=127  Identities=18%  Similarity=0.165  Sum_probs=106.7

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+.+...+..+++.+|+++.+++.+|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|+
T Consensus       288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~  364 (537)
T 3fp2_A          288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY---PYIQLACLLYKQGKFTESE  364 (537)
T ss_dssp             CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH---HHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHH
Confidence            3455677777778888888888888888888888888888888888888888888888   8888888888888888888


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ..|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++...
T Consensus       365 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~  414 (537)
T 3fp2_A          365 AFFNETKLKFPTLPEVPTFFAEILTD-RGDFDTAIKQYDIAKRLEEVQEKI  414 (537)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCcchhh
Confidence            88888888888888888888888877 458888888888888888876654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.50  E-value=5.6e-13  Score=97.22  Aligned_cols=106  Identities=15%  Similarity=0.069  Sum_probs=98.5

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.++..+..+++.+|++..+++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|
T Consensus        27 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~~~~~~A  103 (133)
T 2lni_A           27 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK---GYTRKAAALEAMKDYTKA  103 (133)
T ss_dssp             HHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHHhhHHHH
Confidence            35567888999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDK  181 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~  181 (228)
                      +..|++++...|.+++++..++.++..++
T Consensus       104 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A          104 MDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999998888888899999999887743

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.50  E-value=4.9e-13  Score=121.67  Aligned_cols=128  Identities=15%  Similarity=0.088  Sum_probs=74.0

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      .+.+..+.|+..+..+++.+|++...++.+|.++.+.|++++|++.|+++++++|+++.   +++++|.++.+.|++++|
T Consensus       418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A  494 (597)
T 2xpi_A          418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL---LLNELGVVAFNKSDMQTA  494 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhCCHHHH
Confidence            34455555666666666666666666666666666666666666666666666666555   566666666666666666


Q ss_pred             HHHHHHHHHhc------CCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          153 IAEMEDVSISL------KGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       153 ~~~~~~al~~~------~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ++.|++++...      |.+ +..+..++.++.. .|++++|++.|+++++++|++...
T Consensus       495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~  552 (597)
T 2xpi_A          495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LKMYDAAIDALNQGLLLSTNDANV  552 (597)
T ss_dssp             HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHH
Confidence            66666665442      221 3455555555555 335566666666666666655543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.49  E-value=3.9e-13  Score=114.11  Aligned_cols=117  Identities=10%  Similarity=-0.086  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHH
Q 027087           81 AEKDASAAVSSRVSDALELLEKGRELQA-------IGDF-------NKALQYFTLVVE-NYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        81 a~~~~~~al~~~p~~a~a~~~lG~~~~~-------~g~~-------~~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~~  145 (228)
                      +...+.+++..+|+++.+|+++|..+..       .|++       ++|+..|+++++ ++|++..   +|.++|.++..
T Consensus        35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~---~~~~~~~~~~~  111 (308)
T 2ond_A           35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---LYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHh
Confidence            3344455555555555555555554432       3443       555555555555 4555554   55555555555


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          146 VGDREEAIAEMEDVSISLKGYPE-VHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~~~~p~-~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      .|++++|+..|++++...|.+++ ++..++.++... |++++|+..|+++++++|..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH-HCHHHHHHHHHHHHTSTTCC
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC
Confidence            55555555555555444444443 455555544442 24455555555555555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.49  E-value=2.7e-13  Score=114.44  Aligned_cols=131  Identities=18%  Similarity=0.056  Sum_probs=82.8

Q ss_pred             hhCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAI-GDFNKALQYFTLVVENYKDFAF---SEYARVGRALA  142 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~-g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~  142 (228)
                      ...+..+.|+..+.+++++.++.      +.++.++|.++... |++++|+..|++++++.|++..   ...++.++|.+
T Consensus        88 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~  167 (292)
T 1qqe_A           88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL  167 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            34556666777777776555432      45677777777775 7777777777777777765411   01156777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          143 LYEVGDREEAIAEMEDVSISLKGYPE-------VHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       143 ~~~~g~~~~A~~~~~~al~~~~~~p~-------~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +..+|++++|+..|++++...+.++.       .+.++|.++.. .|++++|+..|+++++++|++...
T Consensus       168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHGGGCC-------
T ss_pred             HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCc
Confidence            77777777777777777665555432       45666776666 347777777777777777776653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=1.8e-12  Score=93.69  Aligned_cols=106  Identities=14%  Similarity=0.071  Sum_probs=99.0

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.++..+..+++.+|++..+++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|
T Consensus        23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A   99 (131)
T 2vyi_A           23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK---AYGRMGLALSSLNKHVEA   99 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH---HHHHHHHHHHHhCCHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDK  181 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~  181 (228)
                      +..|++++...|.++.++..++.++...+
T Consensus       100 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A          100 VAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            99999999999999999999999887754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.48  E-value=8.6e-13  Score=115.76  Aligned_cols=130  Identities=21%  Similarity=0.160  Sum_probs=108.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|+..+..+++.+|+++.+++.+|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++|
T Consensus        37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A  113 (450)
T 2y4t_A           37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA---ARLQRGHLLLKQGKLDEA  113 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHH
Confidence            45566788888888889889999999999999999999999999999999999999988   899999999999999999


Q ss_pred             HHHHHHHHHhcCCCH---HHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          153 IAEMEDVSISLKGYP---EVHAAL------------AAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       153 ~~~~~~al~~~~~~p---~~~~~l------------a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +..|++++...|.++   ..+..+            |.++.. .|++++|+..|+++++++|++...+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~  181 (450)
T 2y4t_A          114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG-SGDYTAAIAFLDKILEVCVWDAELRE  181 (450)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            999999977666666   665544            444655 46889999999999999888776543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.48  E-value=9.5e-13  Score=106.75  Aligned_cols=134  Identities=13%  Similarity=0.039  Sum_probs=115.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhcCCCc
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDAL---ELLEKGRELQA------------------IGDFNKALQYFTLVVENYKDFA  130 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~---a~~~lG~~~~~------------------~g~~~~Ai~~~~~Al~l~P~~~  130 (228)
                      ....+..+.|+..+.++++.+|++..   +++.+|.++..                  .|++++|+..|+++++.+|++.
T Consensus        51 ~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           51 YYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            45667889999999999999998864   89999999986                  6899999999999999999998


Q ss_pred             hhHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087          131 FSEYA--------------RVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTI  193 (228)
Q Consensus       131 ~~~~a--------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~  193 (228)
                      .+..+              .+.+|.+++..|++++|+..|++++...|.++   +++..+|.++..+ |++++|++.+++
T Consensus       131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~-g~~~~A~~~~~~  209 (225)
T 2yhc_A          131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM-QMNAQAEKVAKI  209 (225)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc-CCcHHHHHHHHH
Confidence            72111              16789999999999999999999999888886   7899999999885 589999999999


Q ss_pred             HHhcCCCCCchhh
Q 027087          194 ATLLDPHYTDLSY  206 (228)
Q Consensus       194 al~l~P~~~~~~~  206 (228)
                      ++...|+..+-++
T Consensus       210 l~~~~~~~~~~~~  222 (225)
T 2yhc_A          210 IAANSSNTLEHHH  222 (225)
T ss_dssp             HHHCCSCCCCCTT
T ss_pred             HHhhCCCchhhcc
Confidence            9999998877543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.48  E-value=1.8e-12  Score=109.27  Aligned_cols=128  Identities=16%  Similarity=0.106  Sum_probs=108.3

Q ss_pred             hhCCCchHHHHHHHHHHhcCh---hhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRV---SDALELLEK------------GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV  137 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p---~~a~a~~~l------------G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~  137 (228)
                      ...+..+.+...+..+++.+|   ++...++.+            |.++...|++++|+..|+++++.+|++..   ++.
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~  158 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE---LRE  158 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH---HHH
Confidence            345667778888888888888   888887777            68888889999999999999988898888   889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          138 GRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       138 ~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ++|.++...|++++|+..+++++...|.+++.+..+|.++... |++++|+..|+++++++|++...
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~  224 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL-GDHELSLSEVRECLKLDQDHKRC  224 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCccchHH
Confidence            9999999999999999999999888888888888899888884 58899999999999999988764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.48  E-value=5.1e-14  Score=122.00  Aligned_cols=113  Identities=17%  Similarity=0.117  Sum_probs=96.1

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-----------------hhHHHHHHHHHHHHHcCCHHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-----------------FSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-----------------~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      +..++.+..++++|..+...|+|++|+..|++++.++|++.                 .   +++|+|.++..+|++++|
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~---~~~nla~~~~~~g~~~~A  249 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP---CHLNIAACLIKLKRYDEA  249 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTH---HHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHH---HHHHHHHHHHHcCCHHHH
Confidence            44567788999999999999999999999999999999876                 4   789999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +..|++++...|.++.+++.+|.++.. .|++++|+..|+++++++|++..++.
T Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~  302 (338)
T 2if4_A          250 IGHCNIVLTEEEKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRR  302 (338)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999999999999988 56999999999999999999887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.48  E-value=1.6e-12  Score=114.13  Aligned_cols=133  Identities=11%  Similarity=-0.000  Sum_probs=108.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhcCCCchh-HHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEK------------GRELQAIGDFNKALQYFTLVVENYKDFAFS-EYARVG  138 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~l------------G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-~~a~~~  138 (228)
                      ....+..+.+...+..+++.+|++...+..+            |.++...|++++|+..|+++++++|+++.. ...+.+
T Consensus       221 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  300 (450)
T 2y4t_A          221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER  300 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            3455667777778888888888887776555            888888888888888888888888887421 115788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          139 RALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       139 la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      +|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|+..|+++++++|++...+
T Consensus       301 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~  366 (450)
T 2y4t_A          301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI-EEMYDEAIQDYETAQEHNENDQQIR  366 (450)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCcchHHHH
Confidence            89999999999999999999988888888999999998887 4588999999999999999887653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.48  E-value=1.8e-13  Score=106.79  Aligned_cols=93  Identities=20%  Similarity=0.193  Sum_probs=85.4

Q ss_pred             hhCCCchHHHHHHHHHHhcChh-------h-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------cCCCchhH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVS-------D-----ALELLEKGRELQAIGDFNKALQYFTLVVEN-------YKDFAFSE  133 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~-------~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-------~P~~~~~~  133 (228)
                      .+.+..+.|+..++++++++|+       +     +.+|+|+|.++..+|+|++|+.+|+++|++       +|++..  
T Consensus        22 ~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~--   99 (159)
T 2hr2_A           22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK--   99 (159)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH--
T ss_pred             HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH--
Confidence            3557789999999999999998       4     349999999999999999999999999999       999999  


Q ss_pred             HHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 027087          134 YAR----VGRALALYEVGDREEAIAEMEDVSISLKGYPE  168 (228)
Q Consensus       134 ~a~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~  168 (228)
                       +|    +++|.++..+|++++|+.+|++++...|.+..
T Consensus       100 -A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A          100 -LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             -HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence             99    99999999999999999999999888887763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.48  E-value=8.7e-13  Score=104.53  Aligned_cols=123  Identities=13%  Similarity=-0.040  Sum_probs=101.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDA----------------LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYA  135 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a----------------~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a  135 (228)
                      ....+..+.|+..+..+++..|+++                .+++++|.++...|++++|+..|+++++++|++..   +
T Consensus        48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~  124 (198)
T 2fbn_A           48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK---A  124 (198)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---H
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH---H
Confidence            3456778889999999999888876                89999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcC
Q 027087          136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAE-NQFTIATLLD  198 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~-~~~~~al~l~  198 (228)
                      ++++|.++..+|++++|+..|++++...|.++.++..++.++...+ +.+++. ..|.+.+...
T Consensus       125 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          125 LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK-EARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHHC-------------
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999887754 556665 5566555543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=8.4e-13  Score=112.03  Aligned_cols=124  Identities=8%  Similarity=-0.060  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHh-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           79 TQAEKDASAAVS-SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        79 ~~a~~~~~~al~-~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      +.+...+.++++ ++|++..+|+++|.++...|++++|+..|+++++++|++..  .+|.++|.++.+.|++++|+..|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHHH
Confidence            677777888887 68888888888888888888888888888888888887763  167888888888888888888888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +++...|.+...+...+.+.+...|++++|+..|+++++++|++...
T Consensus       159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  205 (308)
T 2ond_A          159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  205 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            88665555555555444443333457777777777777777776554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.47  E-value=3.3e-13  Score=118.62  Aligned_cols=109  Identities=10%  Similarity=-0.024  Sum_probs=100.2

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVE----------------NYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~----------------l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      +.+..++++|..+.+.|+|++|+..|+++++                ++|.+..   +++|+|.+++.+|++++|+..++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~~g~~~~A~~~~~  297 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS---CVLNIGACKLKMSDWQGAVDSCL  297 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHH---HHHHHHHHHHhccCHHHHHHHHH
Confidence            4466799999999999999999999999999                7777788   89999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +++...|.++.+++.+|.++..+ |++++|+..|+++++++|++...+.
T Consensus       298 ~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~  345 (370)
T 1ihg_A          298 EALEIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQA  345 (370)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99988889999999999999884 6999999999999999999877544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.47  E-value=1.2e-12  Score=94.80  Aligned_cols=106  Identities=24%  Similarity=0.225  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAA  176 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~  176 (228)
                      .+++.+|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++|+..+++++...+.++..+..++.+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   78 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh---HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            46899999999999999999999999999999998   899999999999999999999999988888889999999998


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          177 LYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       177 l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +.. .|++++|+..|+++++.+|++....+
T Consensus        79 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~  107 (136)
T 2fo7_A           79 YYK-QGDYDEAIEYYQKALELDPRSAEAWY  107 (136)
T ss_dssp             HHT-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHH-hcCHHHHHHHHHHHHHhCCCChHHHH
Confidence            887 56899999999999999998876543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.47  E-value=1.2e-12  Score=110.57  Aligned_cols=132  Identities=10%  Similarity=-0.058  Sum_probs=109.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcC-----h-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSR-----V-SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALA  142 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~-----p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~  142 (228)
                      ....+..+.|+..+.+++++.     + ..+.++.++|.++..+|++++|+.+|++++++.|+...   ...++.++|.+
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345677888888888888653     3 23789999999999999999999999999999876521   12378999999


Q ss_pred             HHHc-CCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          143 LYEV-GDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       143 ~~~~-g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      |... |++++|+..|++++...+.+      ..++..+|.++.. .|++++|+..|+++++++|+....
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcc
Confidence            9996 99999999999998877643      3567889998888 469999999999999999987764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.46  E-value=1.2e-12  Score=97.50  Aligned_cols=100  Identities=15%  Similarity=0.040  Sum_probs=86.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHHHcC
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF----SEYARVGRALALYEVG  147 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----~~~a~~~la~~~~~~g  147 (228)
                      ..+.+..+.|+..+.++++++|+++.+++++|.++..+|+|++|+..|+++++++|++..    .+.+++++|.++..+|
T Consensus        18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~   97 (127)
T 4gcn_A           18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN   97 (127)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence            445677899999999999999999999999999999999999999999999999998743    1237899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087          148 DREEAIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus       148 ~~~~A~~~~~~al~~~~~~p~~~~~  172 (228)
                      ++++|+..|++++... .+|+....
T Consensus        98 ~~~~A~~~~~kal~~~-~~~~~~~~  121 (127)
T 4gcn_A           98 DLSLAVQWFHRSLSEF-RDPELVKK  121 (127)
T ss_dssp             CHHHHHHHHHHHHHHS-CCHHHHHH
T ss_pred             CHHHHHHHHHHHHhhC-cCHHHHHH
Confidence            9999999999996644 46765443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.46  E-value=9.2e-14  Score=125.98  Aligned_cols=111  Identities=17%  Similarity=0.133  Sum_probs=103.4

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      .++.+..++++|.++..+|++++|++.|+++++++|++..   +++++|.++.++|++++|++.|++++...|.++.+++
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   78 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---YYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   78 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3566777899999999999999999999999999999999   9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++|.++..+ |++++|++.|+++++++|++...+.
T Consensus        79 ~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~~~~~  112 (477)
T 1wao_1           79 RRAASNMAL-GKFRAALRDYETVVKVKPHDKDAKM  112 (477)
T ss_dssp             HHHHHHHHH-TCHHHHHHHHHHHHHHSTTCTTHHH
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999885 5899999999999999999988654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.45  E-value=1.2e-12  Score=117.27  Aligned_cols=130  Identities=12%  Similarity=0.089  Sum_probs=120.3

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.+...+..+++.+|+ ..+++.+|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++
T Consensus       253 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~  328 (537)
T 3fp2_A          253 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---TYYHRGQMYFILQDYKN  328 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHhcCCHHH
Confidence            34456678888899999999999 999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |+..|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++...+.
T Consensus       329 A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~  382 (537)
T 3fp2_A          329 AKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFTESEAFFNETKLKFPTLPEVPT  382 (537)
T ss_dssp             HHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            9999999999999999999999999988 56999999999999999999987644

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.45  E-value=6.5e-14  Score=99.76  Aligned_cols=93  Identities=14%  Similarity=0.137  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY------PE  168 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------p~  168 (228)
                      ++..++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++|+..|++++...|.+      +.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV---GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            5678999999999999999999999999999999999   99999999999999999999999998888888      77


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH
Q 027087          169 VHAALAAALYVDKHALLLAENQF  191 (228)
Q Consensus       169 ~~~~la~~l~~~~~~~~~A~~~~  191 (228)
                      +++.+|.++...+ ++++|+..|
T Consensus        80 ~~~~~~~~~~~~~-~~~~a~~~~  101 (111)
T 2l6j_A           80 LQYRLELAQGAVG-SVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHH-CCCCCSSSS
T ss_pred             HHHHHHHHHHHHH-hHhhhHhHH
Confidence            8888888887754 555555543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.45  E-value=2e-12  Score=88.68  Aligned_cols=85  Identities=22%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~  172 (228)
                      +.++..++++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|+..|++++...|.++.++..
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            357889999999999999999999999999999999999   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027087          173 LAAALYVD  180 (228)
Q Consensus       173 la~~l~~~  180 (228)
                      +|.++...
T Consensus        83 l~~~~~~~   90 (91)
T 1na3_A           83 LGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987663

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.45  E-value=2.9e-12  Score=101.64  Aligned_cols=103  Identities=15%  Similarity=0.022  Sum_probs=94.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~  172 (228)
                      ..++..++++|.++...|++++|+..|++++  +| ++.   +++++|.++...|++++|+..|++++...|.++.++..
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   76 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ   76 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            3456678999999999999999999999995  45 566   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          173 LAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      +|.++.. .|++++|+..|++++++.|++.
T Consensus        77 lg~~~~~-~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           77 RGMLYYQ-TEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHH-cccHHHHHHHHHHHHHhCCCcc
Confidence            9999988 5699999999999999999877

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.45  E-value=3.2e-12  Score=90.86  Aligned_cols=101  Identities=18%  Similarity=0.118  Sum_probs=93.5

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.+...+..++..+|++...++++|.++...|++++|+..++++++++|++..   +++++|.++...|++++|
T Consensus        15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A   91 (118)
T 1elw_A           15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---GYSRKAAALEFLNRFEEA   91 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHHhhHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHH
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAA  176 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~  176 (228)
                      +..|++++...|.++..+..++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           92 KRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHh
Confidence            999999988888888888777764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.45  E-value=5.8e-13  Score=111.31  Aligned_cols=126  Identities=13%  Similarity=0.030  Sum_probs=115.8

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus       182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR---VMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhccHHH
Confidence            445677888999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          152 AIAEMEDVSISLKG------------YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       152 A~~~~~~al~~~~~------------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      |+..|++++...|.            ++..+..++.++... |++++|...++++++..|+.
T Consensus       259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~~~~  319 (327)
T 3cv0_A          259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM-NRPDLVELTYAQNVEPFAKE  319 (327)
T ss_dssp             HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT-TCHHHHHHHTTCCSHHHHHH
T ss_pred             HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcchh
Confidence            99999999999888            688999999999884 68999999999888876654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.44  E-value=6e-12  Score=90.16  Aligned_cols=105  Identities=20%  Similarity=0.166  Sum_probs=97.1

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.+...+..+++.+|++...++++|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++|
T Consensus        20 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A   96 (125)
T 1na0_A           20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQGDYDEA   96 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhcCHHHH
Confidence            34566788899999999999999999999999999999999999999999999999998   999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVD  180 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~  180 (228)
                      +..|++++...|.++.++..++.++...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           97 IEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            9999999999999999999998877653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.44  E-value=1.3e-13  Score=107.57  Aligned_cols=111  Identities=15%  Similarity=0.147  Sum_probs=92.3

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      ||...+.++.+|..+...|++++|+..|+++++++|++..   +++++|.++...|++++|+..|++++...| ++..+.
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~   77 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKS   77 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHH
Confidence            3455566899999999999999999999999999999999   999999999999999999999999988778 887666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++.+....++...+|+..|+++++++|++...++
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~  112 (176)
T 2r5s_A           78 LIAKLELHQQAAESPELKRLEQELAANPDNFELAC  112 (176)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence            66654333222335689999999999999988765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.43  E-value=2.8e-12  Score=116.62  Aligned_cols=126  Identities=17%  Similarity=0.104  Sum_probs=93.7

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.+...+..+++.+|++...++.+|.++.+.|++++|+..|+++++++|++..   +++++|.++.+.|++++|++.
T Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~  429 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP---AWIGFAHSFAIEGEHDQAISA  429 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHH
Confidence            44455555555556667777777788888888888888888888888888887777   778888888888888888888


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      |++++...|.++..+..++.++.. .|++++|++.|+++++++|++...+
T Consensus       430 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~  478 (597)
T 2xpi_A          430 YTTAARLFQGTHLPYLFLGMQHMQ-LGNILLANEYLQSSYALFQYDPLLL  478 (597)
T ss_dssp             HHHHHHTTTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             HHHHHHhCccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHH
Confidence            888776666677777777777766 3477888888888888877766543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.43  E-value=5.1e-13  Score=112.56  Aligned_cols=126  Identities=12%  Similarity=-0.040  Sum_probs=107.4

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.|+..+..+++.+|+++.+++++|.++..+|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~   90 (281)
T 2c2l_A           14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHFFLGQCQLEMESYDE   90 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHH
Confidence            345577889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH-----H--------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          152 AIAEMEDVSISLKGYP-----E--------------------------VHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       152 A~~~~~~al~~~~~~p-----~--------------------------~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      |+..|++++...|.++     .                          ....++.++   .|++++|++.|+++++++|+
T Consensus        91 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~---~~~~~~A~~~~~~al~~~p~  167 (281)
T 2c2l_A           91 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI---AAERERELEECQRNHEGHED  167 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH---HHHHHHHHTTTSGGGTTTSC
T ss_pred             HHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHhhhccccc
Confidence            9999999988776542     1                          111222211   24789999999999999997


Q ss_pred             CCc
Q 027087          201 YTD  203 (228)
Q Consensus       201 ~~~  203 (228)
                      +..
T Consensus       168 ~~~  170 (281)
T 2c2l_A          168 DGH  170 (281)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.43  E-value=1.3e-12  Score=117.55  Aligned_cols=120  Identities=12%  Similarity=-0.039  Sum_probs=102.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD---------------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYAR  136 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~---------------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~  136 (228)
                      ..+.+..+.|+..+.++++++|++               ..+++++|.++.++|+|++|+..|+++++++|++..   ++
T Consensus       278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~  354 (457)
T 1kt0_A          278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK---GL  354 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HH
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HH
Confidence            446677889999999999999988               799999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 027087          137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAE-NQFTIAT  195 (228)
Q Consensus       137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~-~~~~~al  195 (228)
                      +++|.+|..+|++++|+..|++++...|.++.++..++.++..++ +++++. ..|++++
T Consensus       355 ~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~-~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          355 YRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK-EHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH-HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            999999999999999999999998888888899999999888865 566665 3444444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.8e-12  Score=115.15  Aligned_cols=125  Identities=15%  Similarity=0.076  Sum_probs=58.4

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++.+|++..   +++++|.++...|++++|+..
T Consensus       318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---VPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH---HHHHHHHHHHHCCCHHHHHHH
Confidence            33444444444444444444444455555555555555555555555555554444   444445555445555555555


Q ss_pred             HHHHHHhcCCCHH------HHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCc
Q 027087          156 MEDVSISLKGYPE------VHAALAAALYVD--KHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       156 ~~~al~~~~~~p~------~~~~la~~l~~~--~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      |++++...+.++.      ++..+|.++...  .|++++|+..|+++++++|++..
T Consensus       395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  450 (514)
T 2gw1_A          395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ  450 (514)
T ss_dssp             HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence            5444444443332      444444444330  12444444444444444444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.8e-11  Score=90.86  Aligned_cols=102  Identities=15%  Similarity=0.055  Sum_probs=93.6

Q ss_pred             hhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR  149 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~  149 (228)
                      ...+..+.++..+..+++.+|++   ..+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++
T Consensus        39 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~  115 (148)
T 2dba_A           39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK---ALYRRSQALEKLGRL  115 (148)
T ss_dssp             HTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH---HHHHHHHHHHHHTCH
T ss_pred             HHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH---HHHHHHHHHHHcCCH
Confidence            34566888999999999999998   899999999999999999999999999999999998   999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAAL  177 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l  177 (228)
                      ++|+..|++++...|.+++++..++.+.
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          116 DQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999998887776643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.42  E-value=3.2e-12  Score=94.38  Aligned_cols=104  Identities=15%  Similarity=-0.002  Sum_probs=92.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.++..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~   95 (137)
T 3q49_B           19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHFFLGQCQLEMESYDE   95 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH---HHHHHHHHHHHHhhHHH
Confidence            345567889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Q 027087          152 AIAEMEDVSISLKG-----YPEVHAALAAALY  178 (228)
Q Consensus       152 A~~~~~~al~~~~~-----~p~~~~~la~~l~  178 (228)
                      |+..|++++...|.     +.++...+..+..
T Consensus        96 A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           96 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            99999999887776     4455555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.42  E-value=5.5e-12  Score=92.15  Aligned_cols=101  Identities=18%  Similarity=0.130  Sum_probs=90.8

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHc
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDA---LELLEKGRELQAIGDFNKALQYFTLVVENYKDF---AFSEYARVGRALALYEV  146 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a---~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~---~~~~~a~~~la~~~~~~  146 (228)
                      ...+..+.|+..+..+++.+|++.   .+++.+|.++...|++++|+..|+++++.+|++   +.   +++++|.++..+
T Consensus        13 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~---~~~~la~~~~~~   89 (129)
T 2xev_A           13 LKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG---GLLKLGLSQYGE   89 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH---HHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH---HHHHHHHHHHHc
Confidence            455678889999999999999988   899999999999999999999999999999999   66   899999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087          147 GDREEAIAEMEDVSISLKGYPEVHAALAAA  176 (228)
Q Consensus       147 g~~~~A~~~~~~al~~~~~~p~~~~~la~~  176 (228)
                      |++++|+..|++++...|.++.+...+..+
T Consensus        90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           90 GKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             TCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            999999999999988888888766655543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.42  E-value=3.3e-12  Score=92.40  Aligned_cols=82  Identities=16%  Similarity=0.137  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087           80 QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus        80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      .++..+.++++.+|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++|+..|+++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV---AWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3566778889999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             HHhcC
Q 027087          160 SISLK  164 (228)
Q Consensus       160 l~~~~  164 (228)
                      +...|
T Consensus        80 l~~~~   84 (115)
T 2kat_A           80 LAAAQ   84 (115)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            76655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2e-12  Score=114.75  Aligned_cols=133  Identities=19%  Similarity=0.041  Sum_probs=119.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHH---c
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYE---V  146 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~---~  146 (228)
                      ...+..+.+...+..+++.+|++...++++|.++...|++++|+..|+++++++|++...   ..+++++|.++..   .
T Consensus       349 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  428 (514)
T 2gw1_A          349 YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV  428 (514)
T ss_dssp             TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred             HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence            345667888889999999999999999999999999999999999999999999988421   0169999999999   9


Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          147 GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       147 g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |++++|+..|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++.....
T Consensus       429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~  487 (514)
T 2gw1_A          429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ-QEDIDEAITLFEESADLARTMEEKLQ  487 (514)
T ss_dssp             THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhccccHHHHH
Confidence            999999999999999999999999999999988 56899999999999999999887644

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.40  E-value=1.8e-12  Score=92.32  Aligned_cols=71  Identities=14%  Similarity=0.097  Sum_probs=65.2

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK  164 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~  164 (228)
                      .+|+++.+++++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++|+..|++++...+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            47999999999999999999999999999999999999999   999999999999999999999999966544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.37  E-value=9.3e-12  Score=109.33  Aligned_cols=114  Identities=15%  Similarity=0.019  Sum_probs=102.6

Q ss_pred             HhhCCCchHHHHHHHHHHh----------------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHH
Q 027087           72 AATYDPLTQAEKDASAAVS----------------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYA  135 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~----------------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a  135 (228)
                      ..+....+.|+..+..+++                .+|.++.+++++|.++.++|+|++|+..|+++++++|++..   +
T Consensus       233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---a  309 (370)
T 1ihg_A          233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---A  309 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---H
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH---H
Confidence            3455677888888888887                88999999999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 027087          136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAEN  189 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~  189 (228)
                      ++++|.+|..+|++++|+..|++++...|.+++++..++.++..++ +++++.+
T Consensus       310 ~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~-~~~~a~k  362 (370)
T 1ihg_A          310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK-AQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHH
Confidence            9999999999999999999999999999999999999999887754 5566654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.36  E-value=7.9e-12  Score=101.85  Aligned_cols=127  Identities=13%  Similarity=-0.038  Sum_probs=105.6

Q ss_pred             HhhCCCchHHHHHHHHHHhc--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSS--------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVG  138 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~--------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~  138 (228)
                      ....+..+.++..+..+++.        +|....+++++|.++...|++++|+..|++++++.     ++++....++.+
T Consensus        53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  132 (283)
T 3edt_B           53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN  132 (283)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            34567778888888888855        58889999999999999999999999999999983     333332338999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          139 RALALYEVGDREEAIAEMEDVSIS--------LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       139 la~~~~~~g~~~~A~~~~~~al~~--------~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      +|.++...|++++|+..|++++..        .+....++..+|.++..+ |++++|+..|++++++.+
T Consensus       133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ-GKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999776        233347788999999885 589999999999999743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=7.3e-12  Score=116.02  Aligned_cols=128  Identities=9%  Similarity=-0.023  Sum_probs=117.7

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC-CHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIG--DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG-DREEAIA  154 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g--~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g-~~~~A~~  154 (228)
                      .+.++.++..+++.+|++..+|+.+|.++.+.|  +++++++.++++++++|.+..   ||.+++.++...| .++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~---aW~~R~~~l~~l~~~~~~el~  165 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQAAVAPAEELA  165 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc---HHHHHHHHHHHcCCChHHHHH
Confidence            577888888899999999999999999999999  779999999999999999999   9999999999999 9999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHhcCCCCCchhhhh
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVDK-------------HALLLAENQFTIATLLDPHYTDLSYVK  208 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~~-------------~~~~~A~~~~~~al~l~P~~~~~~~~~  208 (228)
                      .+++++...+.+..+|.+++.++....             +.++++++.+.+++.++|++..+++..
T Consensus       166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~  232 (567)
T 1dce_A          166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH  232 (567)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred             HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            999998888888899999999988751             468999999999999999999876543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.35  E-value=1.1e-11  Score=114.84  Aligned_cols=129  Identities=6%  Similarity=-0.183  Sum_probs=120.3

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGD----------FNKALQYFTLVVENYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~----------~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~  145 (228)
                      ...++++..+..++..+|++..+|+.+|.++...|+          ++++++.++++++.+|++..   +|+++++++.+
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---aW~hR~w~l~~  119 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TWHHRCWLLSR  119 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Confidence            456788999999999999999999999999999998          99999999999999999999   99999999999


Q ss_pred             cC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          146 VG--DREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       146 ~g--~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      .|  +++++++.+++++...+.+..+|.+++.++...+..+++++++++++++.+|++..+...
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~  183 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  183 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence            99  779999999999999999999999999999886558999999999999999999887553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.35  E-value=2.9e-12  Score=92.71  Aligned_cols=93  Identities=12%  Similarity=0.007  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 027087          113 NKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFT  192 (228)
Q Consensus       113 ~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~  192 (228)
                      ++|+..|+++++.+|++..   +++++|.++...|++++|+..|++++...|.++.+++.+|.++... |++++|+..|+
T Consensus         2 ~~a~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~   77 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNML---LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQAWE   77 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence            3689999999999999999   9999999999999999999999999999999999999999999885 58999999999


Q ss_pred             HHHhcCCCCCchhhhhh
Q 027087          193 IATLLDPHYTDLSYVKD  209 (228)
Q Consensus       193 ~al~l~P~~~~~~~~~~  209 (228)
                      ++++++|+........+
T Consensus        78 ~al~~~~~~~~~~~~~~   94 (115)
T 2kat_A           78 SGLAAAQSRGDQQVVKE   94 (115)
T ss_dssp             HHHHHHHHHTCHHHHHH
T ss_pred             HHHHhccccccHHHHHH
Confidence            99999998766544433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.34  E-value=4.3e-12  Score=107.09  Aligned_cols=120  Identities=14%  Similarity=-0.020  Sum_probs=106.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|...+.+++..+|+....+...+..+...|+.++|++.|+++++++|++..   +++++|.++...|++++|
T Consensus       162 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~---~~~~la~~l~~~g~~~~A  238 (287)
T 3qou_A          162 IALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAA---LATQLALQLHQVGRNEEA  238 (287)
T ss_dssp             HHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHH---HHHHHHHHHHHcccHHHH
Confidence            44555666666666667888988888888899899999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087          153 IAEMEDVSISLKGY--PEVHAALAAALYVDKHALLLAENQFTIATL  196 (228)
Q Consensus       153 ~~~~~~al~~~~~~--p~~~~~la~~l~~~~~~~~~A~~~~~~al~  196 (228)
                      +..|++++...|.+  +.++..++.++... |+.++|...|++++.
T Consensus       239 ~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~-g~~~~a~~~~r~al~  283 (287)
T 3qou_A          239 LELLFGHLRXDLTAADGQTRXTFQEILAAL-GTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHCTTGGGGHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchHHHHHHHHHHHc-CCCCcHHHHHHHHHH
Confidence            99999999998988  78999999988885 577999999999986

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.34  E-value=9.4e-12  Score=101.40  Aligned_cols=121  Identities=14%  Similarity=-0.055  Sum_probs=99.2

Q ss_pred             CCchHHHHHHHHHHh--------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHH
Q 027087           76 DPLTQAEKDASAAVS--------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVGRALA  142 (228)
Q Consensus        76 ~~~~~a~~~~~~al~--------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~la~~  142 (228)
                      +..+.|+..+.++++        .+|..+.+++++|.++...|++++|+..|++++++.     ++++....++.++|.+
T Consensus        15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            344555666665553        348889999999999999999999999999999985     4443333389999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          143 LYEVGDREEAIAEMEDVSISL-----KGY---PEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       143 ~~~~g~~~~A~~~~~~al~~~-----~~~---p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      +...|++++|+..|++++...     +.+   ..++..+|.++.. .|++++|+..|++++++
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            999999999999999997763     323   4778889998888 56999999999999998

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=2.5e-11  Score=107.30  Aligned_cols=88  Identities=10%  Similarity=-0.111  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHH
Q 027087          112 FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAE  188 (228)
Q Consensus       112 ~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~  188 (228)
                      +++|+..|+++++++|++..   +++++|.++...|++++|+..|++++...+.+.   ..+..+|.++....|++++|+
T Consensus       316 ~~~A~~~~~~a~~~~~~~~~---~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai  392 (472)
T 4g1t_A          316 IGHAVAHLKKADEANDNLFR---VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI  392 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTTCC---CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHHHhhcCCchhh---hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            34444445555555555555   556677777778888888888888865544433   235566665555567788888


Q ss_pred             HHHHHHHhcCCCCC
Q 027087          189 NQFTIATLLDPHYT  202 (228)
Q Consensus       189 ~~~~~al~l~P~~~  202 (228)
                      ..|+++++++|++.
T Consensus       393 ~~y~kal~i~~~~~  406 (472)
T 4g1t_A          393 HHFIEGVKINQKSR  406 (472)
T ss_dssp             HHHHHHHHSCCCCH
T ss_pred             HHHHHHHhcCcccH
Confidence            88888887776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.32  E-value=1.3e-11  Score=109.09  Aligned_cols=127  Identities=14%  Similarity=-0.005  Sum_probs=111.4

Q ss_pred             CchHHHHHHHHHHhcChhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc----CCH
Q 027087           77 PLTQAEKDASAAVSSRVSDALELLEKGRELQ---AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV----GDR  149 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~---~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~----g~~  149 (228)
                      ..+.|+..+.++++++|+++.+++++|.++.   ..|++++|++.|+++++++|++..   ++.++|..+...    |++
T Consensus       153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~---~~~~l~~~~~~~~~~~~~~  229 (472)
T 4g1t_A          153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY---LKVLLALKLHKMREEGEEE  229 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---HHHHHHHHHHHCC------
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---HHHHHHHHHHHHHhhhhHH
Confidence            3578899999999999999999999998865   468889999999999999999998   899999877664    678


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      ++|++.|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++..+++.
T Consensus       230 ~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~  286 (472)
T 4g1t_A          230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQ  286 (472)
T ss_dssp             CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCChHHHHHH
Confidence            899999999999999999999999999888 569999999999999999999887653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.32  E-value=1e-11  Score=102.87  Aligned_cols=124  Identities=15%  Similarity=0.046  Sum_probs=104.4

Q ss_pred             hhCCCchHHHHHHHHHHhc--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCchhHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSS--------RVSDALELLEKGRELQAIGDFNKALQYFTLVVEN--------YKDFAFSEYAR  136 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~--------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--------~P~~~~~~~a~  136 (228)
                      ...+..+.+...+..+++.        ++....+++++|.++...|++++|+..|++++++        +|....   ++
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~  198 (311)
T 3nf1_A          122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK---TK  198 (311)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH---HH
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH---HH
Confidence            3456677778778777755        4788899999999999999999999999999998        555555   89


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------------------------------CCCH
Q 027087          137 VGRALALYEVGDREEAIAEMEDVSISL-------------------------------------------------KGYP  167 (228)
Q Consensus       137 ~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------------~~~p  167 (228)
                      +++|.++..+|++++|+..|++++...                                                 +.++
T Consensus       199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  278 (311)
T 3nf1_A          199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT  278 (311)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence            999999999999999999999997642                                                 2234


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          168 EVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      .++..+|.++... |++++|++.|++++++.|+
T Consensus       279 ~~~~~la~~~~~~-g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          279 TTLKNLGALYRRQ-GKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhc
Confidence            6788899988885 5899999999999999875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.32  E-value=7.5e-12  Score=96.96  Aligned_cols=98  Identities=13%  Similarity=-0.007  Sum_probs=85.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-
Q 027087          106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAL-  184 (228)
Q Consensus       106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~-  184 (228)
                      +...|++++|+..|+++++.+|++..   +++++|.++...|++++|+..|++++...|.++.++..+|.+++...|++ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSE---QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            45689999999999999999999999   99999999999999999999999999999999999999999944436688 


Q ss_pred             -HHHHHHHHHHHhcCCCCCchhh
Q 027087          185 -LLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       185 -~~A~~~~~~al~l~P~~~~~~~  206 (228)
                       ++|+..|+++++++|++...++
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~  119 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALM  119 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHH
Confidence             9999999999999999887655

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.32  E-value=4.4e-11  Score=86.39  Aligned_cols=103  Identities=15%  Similarity=0.080  Sum_probs=92.1

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------chhHHHHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF-------AFSEYARVGRALALYE  145 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~-------~~~~~a~~~la~~~~~  145 (228)
                      ...+..+.++..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++       ..   +++++|.++..
T Consensus        15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~la~~~~~   91 (131)
T 1elr_A           15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK---AYARIGNSYFK   91 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH---HHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH---HHHHHHHHHHH
Confidence            345678889999999999999999999999999999999999999999999999887       66   89999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      .|++++|+..|++++...+ +++....++.+...
T Consensus        92 ~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           92 EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            9999999999999977666 78777777766544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.31  E-value=1.1e-11  Score=104.14  Aligned_cols=138  Identities=11%  Similarity=0.042  Sum_probs=103.3

Q ss_pred             CCchHHHHHHHHHHhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVS------DALELLEKGRELQAIGDFNKALQYFTLVVENYK----DFAFSEYARVGRALALYE  145 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P----~~~~~~~a~~~la~~~~~  145 (228)
                      ...+.|+..+..++...+.      ...+++++|.++..+|++++|+..|+++++...    +......+++|+|.+|..
T Consensus       129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 3u3w_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            3557788888888864322      145789999999999999999999999985321    222222378999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCC
Q 027087          146 VGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHW  213 (228)
Q Consensus       146 ~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~  213 (228)
                      +|++++|+..+++++...+..      +.+++.+|.++..+++.+++|++.|++++.+........+...+..+
T Consensus       209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~~~l~~~  282 (293)
T 3u3w_A          209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNK  282 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGGGGGTTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999999997765433      57889999999886546799999999999886655555554444433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.30  E-value=8.4e-11  Score=100.98  Aligned_cols=127  Identities=9%  Similarity=-0.128  Sum_probs=117.2

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----HHc---
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG--DFNKALQYFTLVVENYKDFAFSEYARVGRALAL----YEV---  146 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g--~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~----~~~---  146 (228)
                      ...+.++.....++.++|++..+|+.+|.++...|  ++++++..+++++..+|++..   +|+.++.++    ...   
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---IWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---HHHHHHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---HHHHHHHHHHHHHHhcccc
Confidence            45678899999999999999999999999999999  999999999999999999999   999999999    777   


Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCchhh
Q 027087          147 GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALL--LAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       147 g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~--~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +++++++..+++++...|.+..++..++.++...+ .++  ++++.+++++++||.+-.+..
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d~~N~sAW~  184 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTDLKNNSAWS  184 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhCCCCHHHHH
Confidence            89999999999999999999999999999888754 677  999999999999999888754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.30  E-value=2.3e-11  Score=85.70  Aligned_cols=91  Identities=16%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHc-CCH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD--FAFSEYARVGRALALYEV-GDR  149 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~-g~~  149 (228)
                      ...+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++++|+  +..   +++++|.++... |++
T Consensus        17 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~l~~~~~~~~~~~   93 (112)
T 2kck_A           17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD---VWAAKADALRYIEGKE   93 (112)
T ss_dssp             HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH---HHHHHHHHHTTCSSCS
T ss_pred             HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH---HHHHHHHHHHHHhCCH
Confidence            34566788999999999999999999999999999999999999999999999999  998   999999999999 999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 027087          150 EEAIAEMEDVSISLKGY  166 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~  166 (228)
                      ++|++.+++++...|.+
T Consensus        94 ~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           94 VEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHhhcccCC
Confidence            99999999996655543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.29  E-value=1.9e-10  Score=94.92  Aligned_cols=111  Identities=17%  Similarity=0.120  Sum_probs=52.0

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDR  149 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~  149 (228)
                      .+.++..+.++++  ++++.+++++|.++..    .|++++|+..|+++++++  ++.   +++++|.++..    .|++
T Consensus        22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~---a~~~lg~~~~~g~~~~~~~   94 (273)
T 1ouv_A           22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN---GCHLLGNLYYSGQGVSQNT   94 (273)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH---HHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH---HHHHHHHHHhCCCCcccCH
Confidence            3444444444444  3444445555555555    555555555555554442  334   44555555555    5555


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcC
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYV----DKHALLLAENQFTIATLLD  198 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~----~~~~~~~A~~~~~~al~l~  198 (228)
                      ++|+..|++++..  .+++++..+|.++..    . +++++|+.+|+++++++
T Consensus        95 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A           95 NKALQYYSKACDL--KYAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhcC
Confidence            5555555554322  244444445444443    2 24455555555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.29  E-value=1e-10  Score=91.46  Aligned_cols=133  Identities=17%  Similarity=0.089  Sum_probs=106.7

Q ss_pred             hhCCCchHHHHHHHHHHh------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCc-hhHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVS------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN---YKDFA-FSEYARVGRALA  142 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l---~P~~~-~~~~a~~~la~~  142 (228)
                      ...+..+.+...+..+++      ..+..+.+++++|.++...|++++|+..|++++++   .+++. ....+++++|.+
T Consensus        37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  116 (203)
T 3gw4_A           37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATV  116 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence            345667888888888886      56778899999999999999999999999999998   45332 223478999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcC--CCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          143 LYEVGDREEAIAEMEDVSISLK--GYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       143 ~~~~g~~~~A~~~~~~al~~~~--~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +..+|++++|+..+++++...+  .++    ..+..+|.++.. .|++++|++.|++++++.....+..+
T Consensus       117 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  185 (203)
T 3gw4_A          117 ALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ-EKNLLEAQQHWLRARDIFAELEDSEA  185 (203)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999976543  233    345788888888 56899999999999998765555433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.29  E-value=1.6e-11  Score=104.18  Aligned_cols=129  Identities=12%  Similarity=0.073  Sum_probs=102.5

Q ss_pred             hhCCCchHHHHHHHHHHhcC-----hh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSR-----VS-DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA---FSEYARVGRALAL  143 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~-----p~-~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~---~~~~a~~~la~~~  143 (228)
                      ...+..+.|+..+.+++++.     +. .+.++.++|.++.. |++++|+..|++++++.|...   ....++.++|.++
T Consensus        87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~  165 (307)
T 2ifu_A           87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL  165 (307)
T ss_dssp             HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            44566778888888887552     22 36788999999998 999999999999999987642   1123789999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          144 YEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ..+|++++|+..|++++...+.+.      ..+..++.++.. .|++++|+..|++++ ++|++...
T Consensus       166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          166 VRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH-RADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHh-CCCCCCCC
Confidence            999999999999999977655432      356667777776 468999999999999 99988764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.28  E-value=9e-12  Score=87.42  Aligned_cols=94  Identities=17%  Similarity=0.075  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY  178 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~  178 (228)
                      .+++|.++...|++++|+..|+++++.+|++..  ++++++|.++..+|++++|+..|++++...|.++.++..      
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence            478899999999999999999999999999863  268999999999999999999999999988888877532      


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          179 VDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       179 ~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                         +.+.++...|++++..+|+...
T Consensus        75 ---~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 ---KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             ---HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             ---HHHHHHHHHHHHHhccCccccc
Confidence               3578899999999999887654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.28  E-value=5.7e-11  Score=103.03  Aligned_cols=128  Identities=9%  Similarity=-0.032  Sum_probs=105.9

Q ss_pred             HhhCCCchHHHHHHHHHHhc-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSS-------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA---FSEYARVGRAL  141 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~-------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~---~~~~a~~~la~  141 (228)
                      ....+..+.|+..+..++++       .+..+.+++++|.++..+|++++|+..|++++++.+...   ....+++++|.
T Consensus       153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  232 (383)
T 3ulq_A          153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL  232 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            34566778888888888755       455677899999999999999999999999999876543   12237999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh-----c-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          142 ALYEVGDREEAIAEMEDVSIS-----L-KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       142 ~~~~~g~~~~A~~~~~~al~~-----~-~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ++..+|++++|+..|++++..     . +..+.++.++|.++..+ |++++|+..|++++++.+.
T Consensus       233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL-GKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999773     3 44458899999999884 5899999999999998654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.27  E-value=9e-11  Score=87.35  Aligned_cols=126  Identities=10%  Similarity=-0.042  Sum_probs=99.9

Q ss_pred             hCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALY  144 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~  144 (228)
                      ..+..+.++..+..+++..++.      +.+++++|.++...|++++|+..|++++++.+....   ...+++++|.++.
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            3455677888888887554432      358899999999999999999999999998765411   1237899999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          145 EVGDREEAIAEMEDVSISLKG--Y----PEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       145 ~~g~~~~A~~~~~~al~~~~~--~----p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ..|++++|+..+++++...+.  +    +..+..++.++... |++++|++.+++++++...
T Consensus       101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHH
Confidence            999999999999999766432  2    25677889888885 5899999999999987654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.27  E-value=4.3e-11  Score=100.58  Aligned_cols=131  Identities=12%  Similarity=0.040  Sum_probs=91.0

Q ss_pred             CCCchHHHHHHHHHHhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhcCCCchhH-HHHHHHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVS------DALELLEKGRELQAIGDFNKALQYFTLVV---ENYKDFAFSE-YARVGRALALY  144 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al---~l~P~~~~~~-~a~~~la~~~~  144 (228)
                      .+..+.|+..+..+++..++      .+.+++++|.++..+|++++|+..|++++   +..|++.... .+++|+|.+|.
T Consensus       128 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 2qfc_A          128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence            34556777777777744322      25678888888888888888888888888   4455543111 26788888888


Q ss_pred             HcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCCCchhh
Q 027087          145 EVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLA-ENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       145 ~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A-~~~~~~al~l~P~~~~~~~  206 (228)
                      .+|++++|+..+++++...+..      ..+++++|.++..+ |++++| ..+|++++.+........+
T Consensus       208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~Ai~~~~~~Al~~~~~~~~~~~  275 (293)
T 2qfc_A          208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL-EYEEAEIEDAYKKASFFFDILEMHAY  275 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence            8888888888888886654321      46777888888774 467888 7778888877554444333

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.27  E-value=1.1e-10  Score=100.29  Aligned_cols=130  Identities=6%  Similarity=-0.112  Sum_probs=119.0

Q ss_pred             hhCC--CchHHHHHHHHHHhcChhhHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087           73 ATYD--PLTQAEKDASAAVSSRVSDALELLEKGREL----QAI---GDFNKALQYFTLVVENYKDFAFSEYARVGRALAL  143 (228)
Q Consensus        73 ~~~~--~~~~a~~~~~~al~~~p~~a~a~~~lG~~~----~~~---g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~  143 (228)
                      ..+.  ..+.++.+...++..+|++..+|+.++.++    ...   +++++++..++++++.+|.+..   +|+.++.++
T Consensus        78 ~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~---aW~~R~~vl  154 (306)
T 3dra_A           78 KNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH---VWSYRKWLV  154 (306)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred             HHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Confidence            3445  678889999999999999999999999999    777   8999999999999999999999   999999999


Q ss_pred             HHcCCHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCCchhh
Q 027087          144 YEVGDRE--EAIAEMEDVSISLKGYPEVHAALAAALYVDKHA------LLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       144 ~~~g~~~--~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~------~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ...|+++  ++++.+++++...+.|-.++..++.++...+ +      ++++++.++++|.++|++..+.+
T Consensus       155 ~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~-~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~  224 (306)
T 3dra_A          155 DTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK-HLATDNTIDEELNYVKDKIVKCPQNPSTWN  224 (306)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG-GGCCHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHHHhCCCCccHHH
Confidence            9999999  9999999999999999999999999887754 4      89999999999999999998753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.26  E-value=8.6e-11  Score=97.29  Aligned_cols=128  Identities=14%  Similarity=-0.004  Sum_probs=105.9

Q ss_pred             HhhCCCchHHHHHHHHHHhc--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSS--------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVG  138 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~--------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~  138 (228)
                      ....+..+.+...+..+++.        ++....+++++|.++...|++++|+..|++++++.     ++++....++.+
T Consensus        79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  158 (311)
T 3nf1_A           79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN  158 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            34567778888888888755        58889999999999999999999999999999985     444433348999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          139 RALALYEVGDREEAIAEMEDVSIS--------LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       139 la~~~~~~g~~~~A~~~~~~al~~--------~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      +|.++...|++++|+..|++++..        .+..+..+..+|.++... |++++|+..|++++++.|.
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ-GKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999776        222346788899988885 5899999999999986543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.26  E-value=1.8e-10  Score=99.86  Aligned_cols=125  Identities=10%  Similarity=-0.033  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-HHHHHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGD--FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD-REEAIAE  155 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~--~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~-~~~A~~~  155 (228)
                      +.++.++..++..+|++..+|+.++.++...|+  +++++..++++++++|.+..   +|.+++.++...|+ ++++++.
T Consensus        91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~---AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCcCHHHHHHH
Confidence            567777888889999999999999999999994  99999999999999999999   99999999999999 6999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDK-------------HALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~-------------~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +++++...|.|..++.+++.++....             +.++++++.+.+++.++|++..+.+
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~  231 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF  231 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999888762             4689999999999999999998753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.25  E-value=1.5e-11  Score=104.34  Aligned_cols=126  Identities=14%  Similarity=0.014  Sum_probs=104.7

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHcCCHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF--AFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~--~~~~~a~~~la~~~~~~g~~~  150 (228)
                      ...+..++|...+...+..+|++. ++|.+|.++.+.|+|++|+..|++++...+.+  ..   +++++|.++..+|+++
T Consensus       113 ~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~---a~~~LG~al~~LG~~~  188 (282)
T 4f3v_A          113 AAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA---AGVAHGVAAANLALFT  188 (282)
T ss_dssp             HHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH---HHHHHHHHHHHTTCHH
T ss_pred             HHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH---HHHHHHHHHHHCCCHH
Confidence            345667777777777778899999 99999999999999999999999887643221  24   7999999999999999


Q ss_pred             HHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          151 EAIAEMEDVSISL--KG-YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       151 ~A~~~~~~al~~~--~~-~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +|+..|++++...  |. .+++++++|.++..+ |+.++|+..|+++++.+|+ ..+
T Consensus       189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~deA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESAAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCc-HHH
Confidence            9999999995322  33 457999999999996 4889999999999999998 554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.23  E-value=2e-10  Score=94.71  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCH
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      +|+++.+++.+|.++...|++++|+..|+++++  |++..   +++++|.++..    .|++++|+..|++++..  .++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~---a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~   74 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS---GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYS   74 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH---HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCH
Confidence            578999999999999999999999999999998  88888   99999999999    99999999999999654  378


Q ss_pred             HHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcC
Q 027087          168 EVHAALAAALYV----DKHALLLAENQFTIATLLD  198 (228)
Q Consensus       168 ~~~~~la~~l~~----~~~~~~~A~~~~~~al~l~  198 (228)
                      ++++.+|.++..    . +++++|+..|+++++.+
T Consensus        75 ~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLK  108 (273)
T ss_dssp             HHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC
Confidence            999999998877    4 58999999999999985

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.23  E-value=7.3e-11  Score=102.37  Aligned_cols=124  Identities=14%  Similarity=0.024  Sum_probs=103.9

Q ss_pred             hhCCCchHHHHHHHHHHhc------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----hHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSS------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF----SEYARVGRALA  142 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----~~~a~~~la~~  142 (228)
                      ...+..+.|...+..++++      ++..+.+++++|.++...|++++|+..|++++++.+....    ...+++++|.+
T Consensus       114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  193 (383)
T 3ulq_A          114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN  193 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence            4556788888888888865      4457899999999999999999999999999999655432    12378999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          143 LYEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       143 ~~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      +..+|++++|+..|++++...+...      .++.++|.++.. .|++++|+.+|++++++
T Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999977655332      578889999988 46999999999999995

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.22  E-value=2.3e-10  Score=99.26  Aligned_cols=131  Identities=13%  Similarity=0.021  Sum_probs=106.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CchhHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSR-------VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD---FAFSEYARVGRAL  141 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~-------p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~---~~~~~~a~~~la~  141 (228)
                      ....+..+.|...+..+++..       +..+.+++++|.++...|++++|+..|++++++.+.   ......+++++|.
T Consensus       151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  230 (378)
T 3q15_A          151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN  230 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345667778888888877432       245778999999999999999999999999997542   2222347899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          142 ALYEVGDREEAIAEMEDVSI-----SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       142 ~~~~~g~~~~A~~~~~~al~-----~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ++..+|++++|+..|++++.     ..+..+.++..+|.++.. .|++++|+..|++++++.+....
T Consensus       231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~  296 (378)
T 3q15_A          231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK-AGQTQKAFQFIEEGLDHITARSH  296 (378)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999977     455556889999999988 46899999999999999776443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.22  E-value=5.3e-11  Score=100.97  Aligned_cols=129  Identities=12%  Similarity=0.083  Sum_probs=104.9

Q ss_pred             hhCCCchHHHHHHHHHHhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVS------DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA---FSEYARVGRALAL  143 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~---~~~~a~~~la~~~  143 (228)
                      ...+..+.+...+..++++.+.      .+..+.++|.++..+|++++|+..|++++++.+...   ....++.++|.+|
T Consensus        47 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~  126 (307)
T 2ifu_A           47 KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM  126 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3456778888888888755432      367899999999999999999999999999965431   1234789999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          144 YEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      .. |++++|+..|++++...+..      ..++.++|.++.. .|++++|+..|++++++.|+...
T Consensus       127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCC
Confidence            99 99999999999998776543      3678889998888 56999999999999999876653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.21  E-value=3.1e-11  Score=85.83  Aligned_cols=81  Identities=11%  Similarity=0.005  Sum_probs=71.8

Q ss_pred             hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          125 NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       125 l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .+|+++.   +++++|.+++.+|++++|+..|++++...|.++.+++.+|.++.. .|++++|++.|++++++.|+..+.
T Consensus         2 ~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            2 EDPEDPF---TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             ---CCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCccCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCch
Confidence            4799999   999999999999999999999999999999999999999999988 569999999999999999887776


Q ss_pred             hhhhh
Q 027087          205 SYVKD  209 (228)
Q Consensus       205 ~~~~~  209 (228)
                      ....+
T Consensus        78 ~~~~~   82 (100)
T 3ma5_A           78 KDLSE   82 (100)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            65544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=1.2e-10  Score=105.59  Aligned_cols=123  Identities=8%  Similarity=-0.052  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHh-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           80 QAEKDASAAVS-SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        80 ~a~~~~~~al~-~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      .+...+.++++ .+|++...|+.+|.++...|++++|+..|+++++++|+++ .   +|.++|.++.+.|++++|++.|+
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~~A~~~~~  380 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL---VYIQYMKFARRAEGIKSGRMIFK  380 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchH---HHHHHHHHHHHhcCHHHHHHHHH
Confidence            77888888887 7999999999999999999999999999999999999874 5   78999999888999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      +++...+.+...+...+.+.+...|++++|+..|+++++.+|++....
T Consensus       381 ~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~  428 (530)
T 2ooe_A          381 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV  428 (530)
T ss_dssp             HHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence            996655555555555555444345688999999999999988877643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.20  E-value=5.6e-10  Score=96.81  Aligned_cols=128  Identities=6%  Similarity=-0.180  Sum_probs=117.1

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGD----------FNKALQYFTLVVENYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~----------~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~  145 (228)
                      +..+.++.....++.+||++..+|+.++.++...|+          +++++..+++++..+|.+..   +|+.++.++..
T Consensus        44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~---aW~hR~wlL~~  120 (331)
T 3dss_A           44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TWHHRCWLLSR  120 (331)
T ss_dssp             CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHhc
Confidence            456778999999999999999999999999998876          79999999999999999999   99999999999


Q ss_pred             cCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          146 VGD--REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       146 ~g~--~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .|+  +++++..+++++...|.|..++...+.++...+..++++++.++++++.+|.+..+..
T Consensus       121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            995  8999999999999999999999999998888553379999999999999999988744

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.19  E-value=1.3e-10  Score=100.76  Aligned_cols=125  Identities=17%  Similarity=0.024  Sum_probs=107.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCchhHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDA----LELLEKGRELQAIGDFNKALQYFTLVVEN------YKDFAFSEYARVGRAL  141 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a----~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l------~P~~~~~~~a~~~la~  141 (228)
                      ....+..+.++..+..+++.+|++.    .+++.+|.++...|++++|+..|++++++      +|....   +++++|.
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~l~~  134 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK---SSGNLGN  134 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH---HHHHHHH
Confidence            3456778899999999999999876    58999999999999999999999999998      566666   8999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhcC
Q 027087          142 ALYEVGDREEAIAEMEDVSISL------KGYPEVHAALAAALYVDKHA-----------------LLLAENQFTIATLLD  198 (228)
Q Consensus       142 ~~~~~g~~~~A~~~~~~al~~~------~~~p~~~~~la~~l~~~~~~-----------------~~~A~~~~~~al~l~  198 (228)
                      ++...|++++|+..|++++...      +....++..+|.++... |+                 +++|++.|++++++.
T Consensus       135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997763      22346888899988885 47                 999999999999875


Q ss_pred             CC
Q 027087          199 PH  200 (228)
Q Consensus       199 P~  200 (228)
                      +.
T Consensus       214 ~~  215 (411)
T 4a1s_A          214 RD  215 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.18  E-value=3.3e-10  Score=98.87  Aligned_cols=128  Identities=10%  Similarity=-0.099  Sum_probs=116.4

Q ss_pred             CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc-C-CHHH
Q 027087           75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV-G-DREE  151 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~-g-~~~~  151 (228)
                      ....+.++.....++.+||++..+|+.+|.++...| ++++++..+++++..+|++..   +|+.++.++... + ++++
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~---aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ---VWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH---HHHHHHHHHHHHCCSCCHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHhcCCChHH
Confidence            345667899999999999999999999999999999 599999999999999999999   999999999998 8 9999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALL--------LAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~--------~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +++.+++++...|.|..++..++.++...+ .++        ++++.++++++++|.+..+..
T Consensus       144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~  205 (349)
T 3q7a_A          144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVDGRNNSAWG  205 (349)
T ss_dssp             HHHHHHHHTSSCTTCHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999998888888899999999887755 456        999999999999999888744

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.17  E-value=2e-10  Score=92.48  Aligned_cols=114  Identities=18%  Similarity=0.066  Sum_probs=63.5

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cC
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG----DFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VG  147 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g----~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g  147 (228)
                      ...+.++..+.++++.  +++.+++++|.++.. |    ++++|+..|++++  +++++.   +++++|.+|..    .+
T Consensus        32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~---a~~~Lg~~y~~g~g~~~  103 (212)
T 3rjv_A           32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKS---GEIVLARVLVNRQAGAT  103 (212)
T ss_dssp             TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHH---HHHHHHHHHTCGGGSSC
T ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHH---HHHHHHHHHHcCCCCcc
Confidence            3344555555555543  455666666666655 4    6666666666663  345555   66666666655    56


Q ss_pred             CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 027087          148 DREEAIAEMEDVSISLKG--YPEVHAALAAALYVD---KHALLLAENQFTIATLL  197 (228)
Q Consensus       148 ~~~~A~~~~~~al~~~~~--~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l  197 (228)
                      ++++|+..|++++...+.  ++++++++|.++..-   .+++++|+.+|++++++
T Consensus       104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            666666666666222211  146666666655541   12556666666666665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.16  E-value=7.9e-10  Score=86.32  Aligned_cols=109  Identities=11%  Similarity=-0.003  Sum_probs=90.7

Q ss_pred             hcCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087           90 SSRV-SDALELLEKGRELQAIGDFNKALQYFTLVVENY------KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS  162 (228)
Q Consensus        90 ~~~p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~------P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  162 (228)
                      ..+| ..+.+++.+|.++...|++++|+..|++++++.      +....   ++.++|.++..+|++++|+..+++++..
T Consensus        19 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           19 LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR---ALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455 678999999999999999999999999999943      33444   8999999999999999999999999776


Q ss_pred             ---cCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          163 ---LKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       163 ---~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                         .+.++    .++.++|.++... |++++|+..+++++++.+...
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQAD  141 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcc
Confidence               33343    5678889988885 589999999999998755433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.16  E-value=3.4e-10  Score=102.70  Aligned_cols=122  Identities=11%  Similarity=-0.081  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hcCCCchhHHHHHHHHHHHH
Q 027087           80 QAEKDASAAVSSRVSDALELLEKGRELQA-------IGDFN-------KALQYFTLVVE-NYKDFAFSEYARVGRALALY  144 (228)
Q Consensus        80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~-------~g~~~-------~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~  144 (228)
                      .+...+.+++..+|+++..|+++|..+..       .|+++       +|+..|+++++ ++|++..   .|+++|.++.
T Consensus       256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~---l~~~~~~~~~  332 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---LYFAYADYEE  332 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH---HHHHHHHHHH
Confidence            45667889999999999999999999986       79987       99999999997 8999999   9999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          145 EVGDREEAIAEMEDVSISLKGYP-EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       145 ~~g~~~~A~~~~~~al~~~~~~p-~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      ..|++++|+..|++++...|.++ .++..++.++... |++++|++.|+++++..|.....+
T Consensus       333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~~~~~~~~~~  393 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVY  393 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred             hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh-cCHHHHHHHHHHHHhccCCchHHH
Confidence            99999999999999988777776 6888899887774 578999999999999988765543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=1.6e-09  Score=90.96  Aligned_cols=127  Identities=12%  Similarity=-0.012  Sum_probs=100.4

Q ss_pred             hhCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALAL  143 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~  143 (228)
                      ...+..+.+...+..+++..+..      ...++.+|.++...|++++|+..|++++++.+....   ...+++++|.+|
T Consensus        86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 2qfc_A           86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            34456667777777777655433      245678899999999999999999999987655411   123789999999


Q ss_pred             HHcCCHHHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          144 YEVGDREEAIAEMEDVS---ISLKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al---~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ..+|++++|+..|++++   ...+.++    .+++++|.++.. .|++++|+..|++++++.++
T Consensus       166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999997   4445543    578899999988 56999999999999998754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.14  E-value=3.2e-10  Score=97.33  Aligned_cols=126  Identities=11%  Similarity=-0.043  Sum_probs=100.0

Q ss_pred             hhCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------chhHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF------AFSEYARVGRA  140 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~------~~~~~a~~~la  140 (228)
                      ...+..+.+...+..+++..++.      +.+++++|.++...|++++|+..|++++++.|+.      ..   ++.++|
T Consensus       198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~la  274 (406)
T 3sf4_A          198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ---SCYSLG  274 (406)
T ss_dssp             HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH---HHHHHH
Confidence            34566777777777777554433      3488999999999999999999999999887765      44   788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          141 LALYEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      .++...|++++|+..|++++...+..      +.++..+|.++... |++++|+..|++++++.+...
T Consensus       275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~  341 (406)
T 3sf4_A          275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISREVG  341 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999997765433      35777888888874 589999999999998865543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.13  E-value=5.3e-10  Score=83.08  Aligned_cols=107  Identities=12%  Similarity=0.051  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA---FSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY----  166 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----  166 (228)
                      ..+.+++.+|.++...|++++|+..|++++++.+...   ....++.++|.++...|++++|+..+++++...+..    
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            3467899999999999999999999999999876432   112378999999999999999999999997765532    


Q ss_pred             --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          167 --PEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       167 --p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                        ...+..+|.++.. .|++++|+..+++++++.+..
T Consensus        87 ~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~  122 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQEL  122 (164)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHc
Confidence              3567888998888 569999999999999886543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.13  E-value=3.2e-10  Score=94.06  Aligned_cols=121  Identities=12%  Similarity=-0.010  Sum_probs=66.6

Q ss_pred             CCchHHHHHHHHHHhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVS------DALELLEKGRELQAIGDFNKALQYFTLVVENYKDF------AFSEYARVGRALAL  143 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~------~~~~~a~~~la~~~  143 (228)
                      +..+.+...+..+++..+.      .+.+++++|.++...|++++|+..|++++++.++.      ..   ++.++|.++
T Consensus       197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~la~~~  273 (338)
T 3ro2_A          197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ---SCYSLGNTY  273 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH---HHHHHHHHH
Confidence            4445555555555533222      12356666666666666666666666666665543      33   556666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          144 YEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ...|++++|+..+++++...+..      ..++..++.++... |++++|...|++++++.+.
T Consensus       274 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHC---
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHh
Confidence            66666666666666664443321      13455566655553 3566666666666666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.13  E-value=4.4e-10  Score=93.19  Aligned_cols=124  Identities=17%  Similarity=0.033  Sum_probs=104.8

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCchhHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD----ALELLEKGRELQAIGDFNKALQYFTLVVEN------YKDFAFSEYARVGRAL  141 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l------~P~~~~~~~a~~~la~  141 (228)
                      ....+..+.++..+..+++.+|++    +..++.+|.++...|++++|+..+++++++      .|....   ++.++|.
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~l~~   91 (338)
T 3ro2_A           15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK---ASGNLGN   91 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH---HHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH---HHHHHHH
Confidence            345677889999999999999888    578899999999999999999999999988      344445   8999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 027087          142 ALYEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHA--------------------LLLAENQFTIAT  195 (228)
Q Consensus       142 ~~~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~--------------------~~~A~~~~~~al  195 (228)
                      ++...|++++|+..+++++...+...      .++..+|.++... |+                    +++|+..|++++
T Consensus        92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999977655432      4778889988885 47                    999999999998


Q ss_pred             hcCC
Q 027087          196 LLDP  199 (228)
Q Consensus       196 ~l~P  199 (228)
                      ++.+
T Consensus       171 ~~~~  174 (338)
T 3ro2_A          171 SLVT  174 (338)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8743

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.12  E-value=4.6e-10  Score=90.31  Aligned_cols=117  Identities=14%  Similarity=-0.017  Sum_probs=93.3

Q ss_pred             CchHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHH----c
Q 027087           77 PLTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYK--DFAFSEYARVGRALALYE----V  146 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P--~~~~~~~a~~~la~~~~~----~  146 (228)
                      ..+.++..+..+++  ++++.+++++|.++..    .+++++|+..|+++++..+  +++.   +++++|.+|..    .
T Consensus        68 ~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~---a~~~Lg~~y~~g~g~~  142 (212)
T 3rjv_A           68 DYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD---AQMLLGLIYASGVHGP  142 (212)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH---HHHHHHHHHHHTSSSS
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH---HHHHHHHHHHcCCCCC
Confidence            35566666776654  5678888999998887    8899999999999988877  3467   88999999988    8


Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCC
Q 027087          147 GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKH-----ALLLAENQFTIATLLDP  199 (228)
Q Consensus       147 g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~-----~~~~A~~~~~~al~l~P  199 (228)
                      +++++|+..|++++.. +.++.+.+++|.++..-.+     ++++|+.+|+++++...
T Consensus       143 ~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          143 EDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             CCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            8899999999998544 5677888889988776323     78999999999988754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.12  E-value=2.7e-10  Score=98.77  Aligned_cols=131  Identities=8%  Similarity=-0.083  Sum_probs=93.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDA------LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALA  142 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a------~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~  142 (228)
                      ....+..+.+...+..+++..++..      .+++++|.++..+|++++|+..|++++++.++...   ...++.++|.+
T Consensus       233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  312 (411)
T 4a1s_A          233 YYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT  312 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3445666777777777776555433      37788888888888888888888888888775411   01267888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          143 LYEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       143 ~~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +..+|++++|+..|++++...+..      ..++..+|.++.. .|++++|.+.|++++++.+....
T Consensus       313 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          313 YTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA-IGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhhccc
Confidence            888888888888888886654322      2467777887777 45788888888888888765443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.12  E-value=8.1e-10  Score=95.79  Aligned_cols=131  Identities=8%  Similarity=-0.031  Sum_probs=106.1

Q ss_pred             hhCCCchHHHHHHHHHHhc------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSS------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA----FSEYARVGRALA  142 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~----~~~~a~~~la~~  142 (228)
                      ...+..+.|+..+..+++.      ++..+.+++++|.++...|++++|+..+++++++.+...    ....+++++|.+
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  191 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN  191 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence            3456678888888888754      345788999999999999999999999999999876432    223478999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 027087          143 LYEVGDREEAIAEMEDVSISLKG--YP----EVHAALAAALYVDKHALLLAENQFTIATL-----LDPHYTDL  204 (228)
Q Consensus       143 ~~~~g~~~~A~~~~~~al~~~~~--~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~-----l~P~~~~~  204 (228)
                      +..+|++++|+..|++++...+.  ++    .++.++|.++..+ |++++|+..|+++++     .+|....+
T Consensus       192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-GDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            99999999999999999775442  22    5788899999885 589999999999999     66665443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.11  E-value=4.3e-10  Score=96.52  Aligned_cols=125  Identities=17%  Similarity=0.030  Sum_probs=105.4

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCchhHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD----ALELLEKGRELQAIGDFNKALQYFTLVVENY------KDFAFSEYARVGRAL  141 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~------P~~~~~~~a~~~la~  141 (228)
                      ....+..+.++..+..+++.+|++    +.+++.+|.++...|++++|+..|++++++.      |....   ++.++|.
T Consensus        19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~la~   95 (406)
T 3sf4_A           19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK---ASGNLGN   95 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHH
Confidence            345567888999999999998887    4689999999999999999999999999883      33444   8999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 027087          142 ALYEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHA--------------------LLLAENQFTIAT  195 (228)
Q Consensus       142 ~~~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~--------------------~~~A~~~~~~al  195 (228)
                      ++...|++++|+..+++++...+..      ..++..+|.++... |+                    +++|+..|++++
T Consensus        96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  174 (406)
T 3sf4_A           96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL  174 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999997765532      25788899988885 47                    999999999999


Q ss_pred             hcCCC
Q 027087          196 LLDPH  200 (228)
Q Consensus       196 ~l~P~  200 (228)
                      ++...
T Consensus       175 ~~~~~  179 (406)
T 3sf4_A          175 SLVTA  179 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.09  E-value=4.8e-10  Score=97.83  Aligned_cols=130  Identities=7%  Similarity=-0.141  Sum_probs=118.2

Q ss_pred             hCC-CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087           74 TYD-PLTQAEKDASAAVSSRVSDALELLEKGRELQAI-G-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        74 ~~~-~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~-g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      .++ ..+.++.+...++..+|++..+|+.++.++... + +++++++.++++++++|.+..   +|..++.++...|+++
T Consensus       100 ~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~---AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          100 SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH---TWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH---HHHHHHHHHHHHHHTT
T ss_pred             HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcccc
Confidence            344 467888888899999999999999999999988 8 999999999999999999999   9999999999999988


Q ss_pred             --------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCCCchhh
Q 027087          151 --------EAIAEMEDVSISLKGYPEVHAALAAALYVDKH------ALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       151 --------~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~------~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                              ++++.+++++...+.|..++..++.++...++      .++++++.+++++.++|++..+.+
T Consensus       177 ~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~  246 (349)
T 3q7a_A          177 RISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWN  246 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence                    99999999999999999999999998877553      279999999999999999988743

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.09  E-value=1.1e-09  Score=91.99  Aligned_cols=129  Identities=12%  Similarity=-0.016  Sum_probs=100.6

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDAL------ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALAL  143 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~------a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~  143 (228)
                      ...+..+.+...+..++...+.+..      .++.+|.++...|++++|+..|++++++.+...++   ..++.++|.+|
T Consensus        86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 3u3w_A           86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            3456677777888877765544333      34468999999999999999999999976554331   22689999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcC---CCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          144 YEVGDREEAIAEMEDVSISLK---GYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al~~~~---~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      ..+|++++|+..|++++....   .+.    .+++++|.++.. .|++++|+..+++++++.++..
T Consensus       166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~A~~~~~~al~~~~~~~  230 (293)
T 3u3w_A          166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999975322   232    578899999988 4699999999999999876653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.09  E-value=3.7e-09  Score=96.26  Aligned_cols=124  Identities=12%  Similarity=0.033  Sum_probs=103.4

Q ss_pred             hCCCchHHHHHHHHHH--------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHH
Q 027087           74 TYDPLTQAEKDASAAV--------SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRA  140 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al--------~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la  140 (228)
                      ..+..++|+..+.+++        ..+|+-+..+.++|.+|..+|+|++|+..+++++++     .|+++.++..++|+|
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4456777888887777        345667788999999999999999999999999977     488888888999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhc-----CCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          141 LALYEVGDREEAIAEMEDVSISL-----KGYP---EVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~-----~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      .+|..+|++++|+..|++++...     +++|   +...+++.++..+ +.+++|+..|+++.+..
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~-~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL-RMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999997643     5667   4556777777774 58999999999987654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.06  E-value=8.7e-10  Score=78.12  Aligned_cols=73  Identities=14%  Similarity=-0.114  Sum_probs=65.0

Q ss_pred             ChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087           92 RVSDALELLEKGRELQAIGD---FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP  167 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~---~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p  167 (228)
                      +|+++..++.+|.+++..++   .++|+..++++++++|++..   +++.+|..+++.|+|++|+..+++++...|.+|
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---ALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            68899999999999987766   79999999999999999999   999999999999999999999999966666644

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.06  E-value=2.9e-09  Score=91.51  Aligned_cols=101  Identities=13%  Similarity=0.049  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------CH
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYEVGDREEAIAEMEDVSISLKG--------YP  167 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~p  167 (228)
                      ++++|.++...|++++|+..+++++++.|+....   ..++.++|.++...|++++|+..+++++...+.        ..
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  135 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  135 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence            4444444444455555555555544444332210   112344444444455555555554444333211        11


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          168 EVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      ..+.++|.+++. .|++++|+..+++++++.+.
T Consensus       136 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          136 FLVRIRAQLLWA-WARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhc
Confidence            233334444444 23445555555544444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.04  E-value=8.2e-11  Score=83.36  Aligned_cols=84  Identities=13%  Similarity=0.152  Sum_probs=77.1

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHHHHc
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF------AFSEYARVGRALALYEV  146 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~------~~~~~a~~~la~~~~~~  146 (228)
                      ...+..+.|+..+..+++.+|+++.+++++|.++..+|++++|+..|+++++++|++      ..   +++++|.++..+
T Consensus        15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---~~~~~~~~~~~~   91 (111)
T 2l6j_A           15 FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK---LQYRLELAQGAV   91 (111)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH---HHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH---HHHHHHHHHHHH
Confidence            355678899999999999999999999999999999999999999999999999998      77   899999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027087          147 GDREEAIAEMEDV  159 (228)
Q Consensus       147 g~~~~A~~~~~~a  159 (228)
                      |++++|+..++++
T Consensus        92 ~~~~~a~~~~~~~  104 (111)
T 2l6j_A           92 GSVQIPVVEVDEL  104 (111)
T ss_dssp             HCCCCCSSSSSSC
T ss_pred             HhHhhhHhHHHHh
Confidence            9999888777665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.99  E-value=1.4e-08  Score=76.37  Aligned_cols=111  Identities=14%  Similarity=-0.080  Sum_probs=93.5

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAI  153 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~  153 (228)
                      .+.++..+.++.+.+...+.    +|.++...+.+++|+..|+++.+.  +++.   +++++|.+|..    .+++++|+
T Consensus        11 ~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~---a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           11 LKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGN---GCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHH---HHHHHHHHHHcCCCCCccHHHHH
Confidence            35567777777776644443    999999999999999999999886  7788   99999999999    89999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVD---KHALLLAENQFTIATLLDP  199 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l~P  199 (228)
                      .+|+++...  .++++.+++|.++..-   .+++++|+.+|+++.+...
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999543  6899999999988771   2589999999999998743

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.97  E-value=3e-09  Score=72.47  Aligned_cols=72  Identities=24%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      +++++|.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++...+..
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            799999999999999999999999999999999999999999988 569999999999999999998776543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.93  E-value=1.1e-08  Score=87.96  Aligned_cols=126  Identities=17%  Similarity=0.070  Sum_probs=98.7

Q ss_pred             hCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAIGDFNKALQYFTLVVENYKD-----FAFSEYARVGRALA  142 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-----~~~~~~a~~~la~~  142 (228)
                      ..+..+.+...+.++++..++.      ..+++++|.++..+|++++|+..|++++++.+.     ++....++.++|.+
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  144 (373)
T 1hz4_A           65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  144 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence            3455677777777777554432      345789999999999999999999999998632     12223378899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          143 LYEVGDREEAIAEMEDVSISLKGY-----PEVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       143 ~~~~g~~~~A~~~~~~al~~~~~~-----p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                      +...|++++|+..+++++...+..     ...+..++.++... |++++|+..+++++++.+.
T Consensus       145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR-GDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc
Confidence            999999999999999997766542     25677888888874 6899999999999988543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.91  E-value=3.4e-09  Score=89.80  Aligned_cols=112  Identities=15%  Similarity=0.063  Sum_probs=96.9

Q ss_pred             hcChhhHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHc-----CCHHH
Q 027087           90 SSRVSDALELLEKGRELQA-----IGD------FNKALQYFTLVVENYKD--FAFSEYARVGRALALYEV-----GDREE  151 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~-----~g~------~~~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~-----g~~~~  151 (228)
                      +.+|++++.++..|.+...     .|+      ..+|...+++|+++||+  +..   ++..+|.+|...     |+.++
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~Gs---A~~~LG~lY~~vPp~~gGd~ek  222 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGA---VWNVLTKFYAAAPESFGGGMEK  222 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHH---HHHHHHHHHHHSCTTTTCCHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCH---HHHHHHHHHHhCCCccCCCHHH
Confidence            6678889999988887743     233      57899999999999999  566   899999999996     99999


Q ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-Cch
Q 027087          152 AIAEMEDVSISLKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHY-TDL  204 (228)
Q Consensus       152 A~~~~~~al~~~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~-~~~  204 (228)
                      |.++|++++.+.|+. .++++.+|..++...|++++|.+.++++++.+|+. +..
T Consensus       223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~  277 (301)
T 3u64_A          223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN  277 (301)
T ss_dssp             HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence            999999999999975 89999999988886679999999999999999985 443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.89  E-value=3.4e-08  Score=88.63  Aligned_cols=116  Identities=19%  Similarity=0.179  Sum_probs=90.1

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCC
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG---DFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGD  148 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g---~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~  148 (228)
                      ...+.++..+..+++.  +++.+++++|.++...|   ++++|+..|+++++.  +++.   +++++|.+|..    .++
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~---a~~~Lg~~y~~g~g~~~~  382 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKA---AQFNLGNALLQGKGVKKD  382 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHTSSSCCC
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHH---HHHHHHHHHHcCCCCCCC
Confidence            3455666666666654  45667888888888766   888888888888876  5677   88999999988    889


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCC
Q 027087          149 REEAIAEMEDVSISLKGYPEVHAALAAALYVD---KHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       149 ~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l~P~  200 (228)
                      +++|+.+|++++..  .++++++.+|.++..-   .+++++|+.+|+++++.+|+
T Consensus       383 ~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            99999999998542  4688888899887761   25889999999999998854

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.87  E-value=2.5e-08  Score=70.51  Aligned_cols=74  Identities=12%  Similarity=0.031  Sum_probs=67.8

Q ss_pred             cCCCchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          126 YKDFAFSEYARVGRALALYEVGD---REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       126 ~P~~~~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      +|++++   .+..+|.+++..++   .++|...+++++...|.++.+.+.+|..++. .|+|++|+..|+++++.+|..+
T Consensus         2 ~p~~~~---~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTAT---QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHH---HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence            688999   99999999987766   7999999999999999999999999999988 5699999999999999999944


Q ss_pred             c
Q 027087          203 D  203 (228)
Q Consensus       203 ~  203 (228)
                      .
T Consensus        78 ~   78 (93)
T 3bee_A           78 D   78 (93)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.87  E-value=2e-08  Score=89.94  Aligned_cols=114  Identities=19%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-H--HHcCCHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQAI----GDFNKALQYFTLVVENYKDFAFSEYARVGRALA-L--YEVGDREE  151 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~----g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~-~--~~~g~~~~  151 (228)
                      ..++..+..+.+.++.++..++++|.+|...    +++++|+..|+++.   |+++.   +++++|.+ +  ...|++++
T Consensus       196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~---a~~~Lg~~~~~~~~~~d~~~  269 (452)
T 3e4b_A          196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA---SWVSLAQLLYDFPELGDVEQ  269 (452)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH---HHHHHHHHHHHSGGGCCHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH---HHHHHHHHHHhCCCCCCHHH
Confidence            3444444445555555555555555555433    45555555555554   55555   55555555 2  24555555


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCch
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDK----HALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      |+.+|++++  ...++++++++|.++.. |    .++++|+.+|+++.   +.+..+
T Consensus       270 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa---~g~~~A  320 (452)
T 3e4b_A          270 MMKYLDNGR--AADQPRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV---GREVAA  320 (452)
T ss_dssp             HHHHHHHHH--HTTCHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred             HHHHHHHHH--HCCCHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence            555555552  12345555555555542 2    25555666665555   444444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.86  E-value=1.6e-08  Score=90.48  Aligned_cols=115  Identities=13%  Similarity=0.032  Sum_probs=95.2

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC-----CH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRE-L--QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG-----DR  149 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~-~--~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g-----~~  149 (228)
                      .+.++..+..+.   |+++.+++++|.+ +  ...|++++|+..|+++.+  .+++.   +++++|.+|. .|     ++
T Consensus       233 ~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~---A~~~Lg~~y~-~G~g~~~d~  303 (452)
T 3e4b_A          233 EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPR---AELLLGKLYY-EGKWVPADA  303 (452)
T ss_dssp             HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHH---HHHHHHHHHH-HCSSSCCCH
T ss_pred             HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHH---HHHHHHHHHH-cCCCCCCCH
Confidence            455666666665   8999999999999 4  478999999999999885  45888   9999999998 56     99


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDK----HALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      ++|+.+|+++.   +.++++.+++|.++.. |    .++++|..+|+++.+.  .+..+.+.
T Consensus       304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~  359 (452)
T 3e4b_A          304 KAAEAHFEKAV---GREVAADYYLGQIYRR-GYLGKVYPQKALDHLLTAARN--GQNSADFA  359 (452)
T ss_dssp             HHHHHHHHTTT---TTCHHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHTT--TCTTHHHH
T ss_pred             HHHHHHHHHHh---CCCHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHhh--ChHHHHHH
Confidence            99999999993   8889999999987765 3    4999999999999874  45665553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.85  E-value=4.2e-08  Score=89.31  Aligned_cols=105  Identities=10%  Similarity=-0.014  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCH-
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-----KGYP-  167 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~p-  167 (228)
                      ..+....+..+|+|++|+..|++++++     .|+++.+...+.|+|.+|..+|+|++|+..+++++...     +.+| 
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            445566678899999999999999987     37777766789999999999999999999999997643     4567 


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCch
Q 027087          168 --EVHAALAAALYVDKHALLLAENQFTIATLL-----DPHYTDL  204 (228)
Q Consensus       168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l-----~P~~~~~  204 (228)
                        ..++++|.++.. +|++++|+..|++|+++     .|+++.+
T Consensus       392 ~a~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~  434 (490)
T 3n71_A          392 LGMAVMRAGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPIT  434 (490)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence              567889998888 56999999999999985     5666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.85  E-value=2.1e-08  Score=87.89  Aligned_cols=129  Identities=14%  Similarity=0.014  Sum_probs=96.2

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCH----HHHHH----HHHH--HHHhcCCCchhHHHHHHHHHHHHHcC
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDF----NKALQ----YFTL--VVENYKDFAFSEYARVGRALALYEVG  147 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~----~~Ai~----~~~~--Al~l~P~~~~~~~a~~~la~~~~~~g  147 (228)
                      ...+...+.+++++||+++.++-.++.++.....+    ...+.    .++.  ++..+|.++.   ++..++.++...|
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~---~~~alal~~l~~g  291 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI---IYQIKAVSALVKG  291 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH---HHHHHHHHHHhCC
Confidence            35667778888899999988888887777521111    11111    2222  2355677777   7888888888899


Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcC
Q 027087          148 DREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTK  211 (228)
Q Consensus       148 ~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~  211 (228)
                      ++++|+..+++++.+.+ +...+..+|.++.. .|++++|++.|++|+.++|......|.+++-
T Consensus       292 d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~  353 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEM-SWLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGANTLYWIENGI  353 (372)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcChHHHHhCce
Confidence            99999999999988763 56677777887776 6799999999999999999998777777643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.84  E-value=4.3e-08  Score=70.21  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYK-------DFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE  168 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P-------~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~  168 (228)
                      +...+.+|..++..|+|+.|+..|++|++..+       ....   .+.++|.+++++|++++|+..+++++...|.++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~---i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVS---VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHH---HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            45679999999999999999999999998752       2344   7899999999999999999999999999999988


Q ss_pred             HHHHHH
Q 027087          169 VHAALA  174 (228)
Q Consensus       169 ~~~~la  174 (228)
                      +..+++
T Consensus        82 ~~~n~~   87 (104)
T 2v5f_A           82 ANGNLK   87 (104)
T ss_dssp             HHHHHH
T ss_pred             HHhhHH
Confidence            877776

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.84  E-value=1.8e-08  Score=70.17  Aligned_cols=70  Identities=19%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPE-VHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~-~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .+++|.++...|++++|+..|++++...|.++. +++.+|.++..+ |++++|+..|+++++++|++...+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            468899999999999999999999999999999 999999999885 5899999999999999999998763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.83  E-value=2e-08  Score=77.38  Aligned_cols=82  Identities=11%  Similarity=0.031  Sum_probs=44.3

Q ss_pred             HHHHhcChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           86 SAAVSSRVSDALELLEKGRELQAIG---DFNKALQYFTLVVENY-K-DFAFSEYARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus        86 ~~al~~~p~~a~a~~~lG~~~~~~g---~~~~Ai~~~~~Al~l~-P-~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      ...++.++.+.++.|++|.++.+.+   +.++++..++.+++.+ | +..+   .+|++|..++++|+|++|++++++++
T Consensus        22 ~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd---~lY~LAv~~~kl~~Y~~A~~y~~~lL   98 (152)
T 1pc2_A           22 QSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD---YVFYLAVGNYRLKEYEKALKYVRGLL   98 (152)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH---HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3334444555555555555555555   4445555555555555 4 3344   45555555555555555555555555


Q ss_pred             HhcCCCHHHH
Q 027087          161 ISLKGYPEVH  170 (228)
Q Consensus       161 ~~~~~~p~~~  170 (228)
                      +..|.+..+.
T Consensus        99 ~ieP~n~QA~  108 (152)
T 1pc2_A           99 QTEPQNNQAK  108 (152)
T ss_dssp             HHCTTCHHHH
T ss_pred             hcCCCCHHHH
Confidence            5555554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.81  E-value=6.2e-08  Score=86.84  Aligned_cols=101  Identities=10%  Similarity=-0.064  Sum_probs=83.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCH---HH
Q 027087          103 GRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-----KGYP---EV  169 (228)
Q Consensus       103 G~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~p---~~  169 (228)
                      +......|+|++|+..|++++++     .|+++.+...+.|+|.+|..+|+|++|+..+++++...     +.+|   ..
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            34444678999999999999985     57888777789999999999999999999999997643     4567   45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCch
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLL-----DPHYTDL  204 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l-----~P~~~~~  204 (228)
                      ++++|.++.. +|++++|+..|++|+++     .|+++.+
T Consensus       385 l~nLa~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          385 WLKLGRLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            7889998888 56999999999999986     4555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.80  E-value=6.4e-10  Score=94.32  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=75.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CH----HHHHHHHHHHH
Q 027087          104 RELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG-YP----EVHAALAAALY  178 (228)
Q Consensus       104 ~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~p----~~~~~la~~l~  178 (228)
                      .++...|+|++|++.|+.++..+|++.    +++.+|.++++.|++++|+..|+++   ... ++    ++++++|.++.
T Consensus       110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~----~~~~~a~l~~~~~r~~dA~~~l~~a---~~~~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          110 ACEAAQGNYADAMEALEAAPVAGSEHL----VAWMKAVVYGAAERWTDVIDQVKSA---GKWPDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHTCHHHHHHHHTSSCCTTCHHH----HHHHHHHHHHHTTCHHHHHHHHTTG---GGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHcCCHHHHHHHHHHh---hccCCcccHHHHHHHHHHHHH
Confidence            567788999999999998888777655    5889999999999999999999988   332 33    58999999988


Q ss_pred             HhcCCHHHHHHHHHHHHhcC--CC-CCchhh
Q 027087          179 VDKHALLLAENQFTIATLLD--PH-YTDLSY  206 (228)
Q Consensus       179 ~~~~~~~~A~~~~~~al~l~--P~-~~~~~~  206 (228)
                      .+ |++++|+.+|++++...  |. +.++.+
T Consensus       183 ~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~  212 (282)
T 4f3v_A          183 NL-ALFTEAERRLTEANDSPAGEACARAIAW  212 (282)
T ss_dssp             HT-TCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred             HC-CCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence            84 59999999999999654  54 333444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.78  E-value=2.1e-07  Score=83.36  Aligned_cols=113  Identities=14%  Similarity=0.120  Sum_probs=85.6

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cC
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VG  147 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g  147 (228)
                      ...+.++..+..+++.  +++.+++.+|.++..    .+++++|+..|+++.+.  +++.   +++++|.+|..    .+
T Consensus        57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~---a~~~Lg~~y~~g~g~~~  129 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQ---AQQNLGVMYHEGNGVKV  129 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHTSSSCC
T ss_pred             cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH---HHHHHHHHHHcCCCCCC
Confidence            3456667777777664  567888888888888    88888888888888764  5677   88888888888    78


Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 027087          148 DREEAIAEMEDVSISLKGYPEVHAALAAALYVD---KHALLLAENQFTIATLL  197 (228)
Q Consensus       148 ~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l  197 (228)
                      ++++|+..|+++..  ..++++++.+|.++..-   .+++++|+++|+++++.
T Consensus       130 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          130 DKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            88888888888843  35678888888877651   24778888888888775

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.75  E-value=7.2e-08  Score=74.23  Aligned_cols=95  Identities=15%  Similarity=-0.007  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHhcCCHH
Q 027087          111 DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG---DREEAIAEMEDVSISL-K-GYPEVHAALAAALYVDKHALL  185 (228)
Q Consensus       111 ~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~-~-~~p~~~~~la~~l~~~~~~~~  185 (228)
                      ....+.+.|.+.++.++.+.+   +.+++|+++.+.+   +.++++..+++++... | .+.+.++++|..++. .++|+
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~---~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~   88 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKS---TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYE   88 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHH
T ss_pred             HHHHHHHHHHHHHccCCCcHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHH
Confidence            456788899999998998898   9999999999998   7779999999997766 4 345899999999988 56999


Q ss_pred             HHHHHHHHHHhcCCCCCchhhhhh
Q 027087          186 LAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       186 ~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      +|+++++++|+++|++.++...++
T Consensus        89 ~A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           89 KALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999999998766433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.68  E-value=1.7e-07  Score=84.08  Aligned_cols=89  Identities=8%  Similarity=-0.011  Sum_probs=76.3

Q ss_pred             CCCchHHHHHHHHHH--------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHH
Q 027087           75 YDPLTQAEKDASAAV--------SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRAL  141 (228)
Q Consensus        75 ~~~~~~a~~~~~~al--------~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~  141 (228)
                      ....++|+..+.+++        ..+|.-+..+.++|.+|..+|+|++|+..|++++++     -|++++++..++|+|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            345677888888877        335666788999999999999999999999999976     4888888888999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhc
Q 027087          142 ALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus       142 ~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      +|..+|++++|+..|++++...
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHH
Confidence            9999999999999999996643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.68  E-value=3.3e-07  Score=82.01  Aligned_cols=105  Identities=13%  Similarity=0.002  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCH-
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-----KGYP-  167 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~p-  167 (228)
                      ..+...-+..+|+|++|+..|++++++     .|+++.+...+.|+|.+|..+|+|++|+..+++++...     +.+| 
T Consensus       290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~  369 (429)
T 3qwp_A          290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV  369 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence            344455677899999999999999975     47777766689999999999999999999999997543     4667 


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCch
Q 027087          168 --EVHAALAAALYVDKHALLLAENQFTIATLL-----DPHYTDL  204 (228)
Q Consensus       168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l-----~P~~~~~  204 (228)
                        ..++++|.++.. +|++++|+..|++|+++     .|+++.+
T Consensus       370 ~a~~l~nLa~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~  412 (429)
T 3qwp_A          370 RGVQVMKVGKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLI  412 (429)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence              457889998888 56999999999999986     5555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.65  E-value=5.2e-07  Score=80.68  Aligned_cols=104  Identities=13%  Similarity=-0.055  Sum_probs=83.3

Q ss_pred             hCCCchHHHHHHHHHHh--------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHH
Q 027087           74 TYDPLTQAEKDASAAVS--------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRA  140 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~--------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la  140 (228)
                      .....+.++..+.++++        .+|.-+..+.++|.+|..+|+|++|+..+++++++     -|+++.++..++|+|
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            34566777888888873        35666788999999999999999999999999976     488888877899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhc-----CCCHH---HHHHHHHHH
Q 027087          141 LALYEVGDREEAIAEMEDVSISL-----KGYPE---VHAALAAAL  177 (228)
Q Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~-----~~~p~---~~~~la~~l  177 (228)
                      .+|..+|++++|+..|++++...     +++|.   ...+|+.+.
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            99999999999999999997653     45663   334444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.60  E-value=2.7e-07  Score=78.19  Aligned_cols=84  Identities=14%  Similarity=-0.015  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHhcChh--hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHH-cCCH
Q 027087           79 TQAEKDASAAVSSRVS--DALELLEKGRELQAI-----GDFNKALQYFTLVVENYKDF-AFSEYARVGRALALYE-VGDR  149 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~-----g~~~~Ai~~~~~Al~l~P~~-~~~~~a~~~la~~~~~-~g~~  149 (228)
                      ..+.....+++++||+  +..+|..+|.+|...     |+.++|.++|++|++++|+. .+   +++.+|..+.. +|++
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id---~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD---HHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH---HHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHhcCCH
Confidence            4556667888999999  778999999999995     99999999999999999975 88   99999999988 5999


Q ss_pred             HHHHHHHHHHHHhcCC
Q 027087          150 EEAIAEMEDVSISLKG  165 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~  165 (228)
                      ++|.+.+++++...+.
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999665554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.50  E-value=1.9e-06  Score=64.60  Aligned_cols=88  Identities=16%  Similarity=0.085  Sum_probs=74.0

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDR  149 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~  149 (228)
                      .+.++..+.++.+.  +++.+++++|.+|..    .+|+++|+..|+++.+.  +++.   +.+++|.+|..    .+++
T Consensus        41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~---a~~~Lg~~y~~G~g~~~d~  113 (138)
T 1klx_A           41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQD---GCLILGYKQYAGKGVVKNE  113 (138)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHH---HHHHHHHHHHCCCCCCcCH
Confidence            34477888888775  788999999999999    99999999999999876  7788   99999999999    9999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087          150 EEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus       150 ~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      ++|+.+|+++...  .++++...++
T Consensus       114 ~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          114 KQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHh
Confidence            9999999999432  4566665554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.50  E-value=1.6e-06  Score=74.28  Aligned_cols=118  Identities=9%  Similarity=-0.017  Sum_probs=74.7

Q ss_pred             HhhCCCchHHHHHHHHHHhcCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CchhHHHHHHHH--HH
Q 027087           72 AATYDPLTQAEKDASAAVSSRV--SDALELLEKGRELQAIGDFNKALQYFTLVVENYKD-----FAFSEYARVGRA--LA  142 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p--~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-----~~~~~~a~~~la--~~  142 (228)
                      ....+..+.|+..+.+.+..+|  ++.+++...+.++.++|+.+.|.+.+++..+.+|+     +.    ...+++  ++
T Consensus       110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~----~l~~Laea~v  185 (310)
T 3mv2_B          110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE----MILNLAESYI  185 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH----HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH----HHHHHHHHHH
Confidence            3344667777777777777765  77777888888888888888888888777777772     22    344443  33


Q ss_pred             HHHcC--CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          143 LYEVG--DREEAIAEMEDVSISLKG--YPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       143 ~~~~g--~~~~A~~~~~~al~~~~~--~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      ....|  ++++|...|+++....|.  .+..+++   ++.. .|++++|++.++.+++.
T Consensus       186 ~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~-~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          186 KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ-QRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH-HTCHHHHHHHHHHHHSH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH-cCCHHHHHHHHHHHHHh
Confidence            55445  777777777777333332  1233333   4444 35777777777766665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.47  E-value=9.6e-07  Score=63.03  Aligned_cols=71  Identities=20%  Similarity=0.010  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLK-------GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..+.+|..++..|+|+.|+.+|++++...+       ..++++..+|.+++.+ |++++|+..++++++++|++..+..
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            578999999999999999999999987652       2358899999999995 5899999999999999999977643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.43  E-value=1.6e-06  Score=74.25  Aligned_cols=117  Identities=11%  Similarity=0.064  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087           81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYK--DFAFSEYARVGRALALYEVGDREEAIAEMED  158 (228)
Q Consensus        81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P--~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~  158 (228)
                      ++..+.+.++.++.+...++.+|.++...|++++|++.+.+.+..+|  ++.+   ++..++.++..+|+.+.|.+.+++
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le---a~~l~vqi~L~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE---LLLLAIEVALLNNNVSTASTIFDN  161 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH---HHHHHHHHHHHCCCHHHHHHHHHH
Confidence            56666666766555667778999999999999999999999999887  7788   899999999999999999999999


Q ss_pred             HHHhcCC----CHHHHHHHHHH--HHHh-cCCHHHHHHHHHHHHhcCCC
Q 027087          159 VSISLKG----YPEVHAALAAA--LYVD-KHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       159 al~~~~~----~p~~~~~la~~--l~~~-~~~~~~A~~~~~~al~l~P~  200 (228)
                      +....+.    +-.....++.+  .... ++++.+|...|+++.+..|+
T Consensus       162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            8554441    12445555544  3332 35899999999999988886

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.38  E-value=2.9e-06  Score=73.79  Aligned_cols=66  Identities=15%  Similarity=0.122  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                      .+.++|.++...|+|++|+..+++++......      .+.+..++.++.. .|++++|+..|++++.+.+..
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~  208 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSI  208 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcC
Confidence            56788999999999999999999886654321      2677788888877 458999999999998876543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.24  E-value=8.9e-06  Score=70.62  Aligned_cols=120  Identities=6%  Similarity=-0.040  Sum_probs=89.6

Q ss_pred             CCchHHHHHHHHHHh------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHH
Q 027087           76 DPLTQAEKDASAAVS------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY------KDFAFSEYARVGRALAL  143 (228)
Q Consensus        76 ~~~~~a~~~~~~al~------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~------P~~~~~~~a~~~la~~~  143 (228)
                      +..+.+...+..++.      ..+..+..+.++|.++...|+|++|+..+++++...      +....   ++.++|.++
T Consensus       109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~  185 (434)
T 4b4t_Q          109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD---VHLLESKVY  185 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH---HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH---HHHHHHHHH
Confidence            445666666666653      234457889999999999999999999999998763      22234   789999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcC---CCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087          144 YEVGDREEAIAEMEDVSISLK---GYP----EVHAALAAALYVDKHALLLAENQFTIATLLDP  199 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al~~~~---~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P  199 (228)
                      ..+|++++|...|++++...+   ..+    ..+..+|..+.. .+++++|..+|.++++..+
T Consensus       186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~y~~A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE-DKDYKTAFSYFFESFESYH  247 (434)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhh
Confidence            999999999999999966543   222    233344444444 5799999999999987643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.23  E-value=1.7e-05  Score=58.97  Aligned_cols=93  Identities=14%  Similarity=0.009  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhcCCC-H----HHHHHHHHHHHHhc
Q 027087          110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE---AIAEMEDVSISLKGY-P----EVHAALAAALYVDK  181 (228)
Q Consensus       110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~-p----~~~~~la~~l~~~~  181 (228)
                      .......+.|.+.+..++...+   +.+++|+++...++..+   ++..++.+   ...+ |    +.++.++..++.. 
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~---~~F~yAw~Lv~S~~~~d~~~GI~lLe~l---~~~~~p~~~Rd~lY~LAvg~ykl-   87 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKS---TQFEYAWCLVRTRYNDDIRKGIVLLEEL---LPKGSKEEQRDYVFYLAVGNYRL-   87 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHH---HHHHHHHHHTTSSSHHHHHHHHHHHHHH---TTTSCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhccCCCcHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHH---HhcCCcchHHHHHHHHHHHHHHh-
Confidence            3455667778888777777777   88999999988887766   88888888   4444 4    7788888888884 


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          182 HALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       182 ~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      |+|++|+.+++.+|+++|++.++.-.+.
T Consensus        88 g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5889999999999999998887755443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.16  E-value=4.2e-06  Score=73.25  Aligned_cols=75  Identities=11%  Similarity=-0.097  Sum_probs=68.2

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE  168 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~  168 (228)
                      ..+|.++.++..++..+...|++++|+..+++|++++|+ ..   ++..+|.++...|++++|++.|++++++.|..+.
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~---a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WL---NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            667899999999999999999999999999999999975 55   7899999999999999999999999888786653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.06  E-value=4.1e-05  Score=76.85  Aligned_cols=62  Identities=13%  Similarity=0.099  Sum_probs=54.8

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      ..+++.+|+++|.++...|++++|+++|.++     +++.   ++++.|.++.+.|++++|++.|..+..
T Consensus      1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~s---ay~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A         1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPS---SYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred             hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChH---HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3567889999999999999999999999886     7777   899999999999999999999988743

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.96  E-value=4e-05  Score=68.70  Aligned_cols=116  Identities=14%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI---------------  161 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~---------------  161 (228)
                      .+|.++|..+...|+|++|+..|.++        .   .|..+|.++.++|+|++|++.++++..               
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~---n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~  191 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------S---NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK  191 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------T---CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------h---hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC
Confidence            36666666666666666666666654        2   356666666666666666666666600               


Q ss_pred             ----------hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh---hhhcCCCChhHHHHHHHh
Q 027087          162 ----------SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY---VKDTKHWPPSLVSSLRHF  224 (228)
Q Consensus       162 ----------~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~---~~~~~~~~~~~~~~~~~~  224 (228)
                                .+-.+|+-...+... |...|++++|+..+++++.+++.+.....   +---+--++++.+.++.+
T Consensus       192 ef~lA~~~~l~L~~~ad~l~~lv~~-Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          192 EFRLAQMCGLHIVVHADELEELINY-YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             CHHHHHHTTTTTTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCHhhHHHHHHH-HHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                      011233332223333 34457999999999999999987654322   111122355555555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.92  E-value=5.2e-06  Score=74.43  Aligned_cols=104  Identities=13%  Similarity=-0.036  Sum_probs=43.6

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +...+..++++.++..+.+ +..++.+...++.+|.+.|+++++++.++.     |+. .   +|.++|..++..|+|++
T Consensus        71 ae~~g~~EeAi~yl~~ark-~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~-~---a~~~IGd~~~~~g~yee  140 (449)
T 1b89_A           71 ANTSGNWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFING-----PNN-A---HIQQVGDRCYDEKMYDA  140 (449)
T ss_dssp             ---------------------------------------CHHHHTTTTTC-----C--------------------CTTT
T ss_pred             HHhCCCHHHHHHHHHHHHH-hCccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH-H---HHHHHHHHHHHcCCHHH
Confidence            4456667777776666665 444578889999999999999999988853     654 4   79999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIA  194 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~a  194 (228)
                      |+..|.++        ..+..++.+++.+ |+|++|++.|+++
T Consensus       141 A~~~Y~~a--------~n~~~LA~~L~~L-g~yq~AVea~~KA  174 (449)
T 1b89_A          141 AKLLYNNV--------SNFGRLASTLVHL-GEYQAAVDGARKA  174 (449)
T ss_dssp             HHHHHHHT--------TCHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHh--------hhHHHHHHHHHHh-ccHHHHHHHHHHc
Confidence            99999988        3667789989884 5899999999999

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.91  E-value=0.00012  Score=68.93  Aligned_cols=111  Identities=8%  Similarity=-0.083  Sum_probs=90.1

Q ss_pred             HHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087           83 KDASAAVSSRVSDALELLEKGRELQAIGDFNKAL-QYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus        83 ~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai-~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      ..+.+++...|.++..|+..+..+...|+.++|+ ..|++++...|.+..   .|+.++......|++++|...|++++.
T Consensus       330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~---Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV---LAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4577888889999999999999999999998997 999999999998887   788899999999999999999999976


Q ss_pred             hc-----------CC-----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          162 SL-----------KG-----------YPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       162 ~~-----------~~-----------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      .+           |.           .+.++..+..+.... +..+.|+..|.+|++.
T Consensus       407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI-QGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            53           32           124566666655554 4679999999999887

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.90  E-value=8.3e-05  Score=55.20  Aligned_cols=88  Identities=10%  Similarity=0.001  Sum_probs=73.4

Q ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-C-CCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087           82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNK---ALQYFTLVVENY-K-DFAFSEYARVGRALALYEVGDREEAIAEM  156 (228)
Q Consensus        82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~---Ai~~~~~Al~l~-P-~~~~~~~a~~~la~~~~~~g~~~~A~~~~  156 (228)
                      ...+......++.+..+.|+++.++.+.++...   +|..++..+..+ | ...+   .+|.+|..++++|+|++|+..+
T Consensus        21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd---~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---YVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHH---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHH---HHHHHHHHHHHhhhHHHHHHHH
Confidence            334445556677888999999999999888887   999999998876 5 3455   6999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHH
Q 027087          157 EDVSISLKGYPEVHAA  172 (228)
Q Consensus       157 ~~al~~~~~~p~~~~~  172 (228)
                      +.+|...|.+..+...
T Consensus        98 ~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           98 RGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             HHHHHHCTTCHHHHHH
T ss_pred             HHHHHhCCCCHHHHHH
Confidence            9999999999876553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.84  E-value=0.00024  Score=71.47  Aligned_cols=115  Identities=13%  Similarity=0.068  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG---------  165 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------  165 (228)
                      +...++++|..+...|+|++|+..|+++        .   .|..+|.+|.++|++++|++.++++   ...         
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~---ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~a 1259 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S---NFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFA 1259 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------h---HHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHH
Confidence            3355677888888888888888888885        3   4788888888888888888888887   222         


Q ss_pred             -------------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh--h-hhhcCCCChhHHHHHHH
Q 027087          166 -------------------YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS--Y-VKDTKHWPPSLVSSLRH  223 (228)
Q Consensus       166 -------------------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~--~-~~~~~~~~~~~~~~~~~  223 (228)
                                         +|+....++..| ...|.+++|+..++++|.++|.+....  + +-..+--++.+.+.++-
T Consensus      1260 cve~~Ef~LA~~cgl~Iiv~~deLeeli~yY-e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A         1260 CVDGKEFRLAQMCGLHIVVHADELEELINYY-QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred             HhhhhHHHHHHHHHHhhhcCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                               223333334433 446899999999999999998776543  1 11212345555555544


Q ss_pred             h
Q 027087          224 F  224 (228)
Q Consensus       224 ~  224 (228)
                      |
T Consensus      1339 f 1339 (1630)
T 1xi4_A         1339 F 1339 (1630)
T ss_pred             H
Confidence            3

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.79  E-value=0.00019  Score=67.71  Aligned_cols=124  Identities=6%  Similarity=-0.076  Sum_probs=80.7

Q ss_pred             CchHHH-HHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------CC-----------CchhH
Q 027087           77 PLTQAE-KDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----------KD-----------FAFSE  133 (228)
Q Consensus        77 ~~~~a~-~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----------P~-----------~~~~~  133 (228)
                      ..+.+. ..+.+++...|.+...|+..+......|+++.|...|++++..-           |.           +..  
T Consensus       358 ~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~--  435 (679)
T 4e6h_A          358 TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY--  435 (679)
T ss_dssp             CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH--
Confidence            344554 66777778888888888888888888888888888888887641           42           223  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          134 YARVGRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       134 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                       +|...+....+.|+.+.|.+.|.+++...+ .....+...+.+-+..+++++.|+..|+++++..|++..
T Consensus       436 -vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~  505 (679)
T 4e6h_A          436 -VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE  505 (679)
T ss_dssp             -HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence             566666666667777777777777744312 223444444444444344467777777777777666554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.58  E-value=0.00062  Score=52.01  Aligned_cols=111  Identities=12%  Similarity=0.031  Sum_probs=90.1

Q ss_pred             cChhhHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087           91 SRVSDALELLEKGRELQAIGDF------NKALQYFTLVVENYKDFAF-----SEYARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~------~~Ai~~~~~Al~l~P~~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      .+|+|++.|+..-..+.+.|+.      +.-++.|++|+..-|-...     =.|.|.+.+.. ...+|.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            5789999999999999988999      8999999999988775321     12456666654 5669999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          160 SISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       160 l~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +...+.++.+|...+..-.. +|+.+.|++.+.+++.+.|...+
T Consensus        87 ~~~hKkFAKiwi~~AqFEiR-qgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELS-QGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHhHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHhccCCCcHH
Confidence            87767778889988987777 56899999999999999997654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.55  E-value=0.0015  Score=58.97  Aligned_cols=117  Identities=17%  Similarity=-0.020  Sum_probs=89.5

Q ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH--------------------
Q 027087           82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL--------------------  141 (228)
Q Consensus        82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~--------------------  141 (228)
                      ...+.+++...|.++..|++.+..+...|+.++|...|++++.. |.+..   .++..+.                    
T Consensus       199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~---l~~~y~~~~e~~~~~~~l~~~~~~~~~  274 (493)
T 2uy1_A          199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF---LSLYYGLVMDEEAVYGDLKRKYSMGEA  274 (493)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH---HHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH---HHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence            45678888889999999999999999999999999999999999 98765   3333222                    


Q ss_pred             --------------------HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087          142 --------------------ALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY  201 (228)
Q Consensus       142 --------------------~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~  201 (228)
                                          .+.+.|+.+.|...|+++ ...+.....+...+.+-+..+++.+.|+..|+.+++..|+.
T Consensus       275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence                                223466788899999998 32223445555556666555656899999999999988876


Q ss_pred             Cc
Q 027087          202 TD  203 (228)
Q Consensus       202 ~~  203 (228)
                      ++
T Consensus       354 ~~  355 (493)
T 2uy1_A          354 TL  355 (493)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.36  E-value=0.0014  Score=50.72  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CC----------------------chhHHHHHHHHHHHHHcCCHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYK---DF----------------------AFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P---~~----------------------~~~~~a~~~la~~~~~~g~~~  150 (228)
                      +.+++.+|.+++..|+|..|+..|++|+.+.-   .+                      .+   ..|.++.||.++|+++
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~E---lkykia~C~~~l~~~~  139 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIE---VKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHH---HHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHH---HHHHHHHHHHHHCCHH
Confidence            45789999999999999999999999876532   11                      14   5799999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087          151 EAIAEMEDVSISLKGYPEVHAALAAAL  177 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~la~~l  177 (228)
                      +|+..++.+ -.-...|.+...||..+
T Consensus       140 ~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            999999886 11224677777777643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.36  E-value=0.0042  Score=46.89  Aligned_cols=77  Identities=13%  Similarity=0.073  Sum_probs=53.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           93 VSDALELLEKGRELQAIGDFN---KALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~---~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      .-.....|+++.++.+..+.+   ++|..++..+..+|.... . -+|.+|..++++|+|++|.++.+.+|...|.|..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~R-d-cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR-E-CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHH-H-HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchh-H-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            445677777777777665544   577777777777775433 1 46777777788888888888777777777777655


Q ss_pred             HH
Q 027087          170 HA  171 (228)
Q Consensus       170 ~~  171 (228)
                      ..
T Consensus       114 ~~  115 (144)
T 1y8m_A          114 GA  115 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.28  E-value=0.0019  Score=48.23  Aligned_cols=74  Identities=11%  Similarity=0.036  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087           95 DALELLEKGRELQAIGDF---NKALQYFTLVVENYKDF-AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~---~~Ai~~~~~Al~l~P~~-~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~  170 (228)
                      .....|+.+.++.+..+.   .++|..++..+..+|.. .+   -+|.+|..++++|+|++|.+..+.++...|.|..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd---~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRE---CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            567788888888776654   46888888888888744 44   578888888888888888888888877777776554


Q ss_pred             H
Q 027087          171 A  171 (228)
Q Consensus       171 ~  171 (228)
                      .
T Consensus       116 ~  116 (134)
T 3o48_A          116 A  116 (134)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.11  E-value=0.015  Score=43.77  Aligned_cols=77  Identities=13%  Similarity=0.053  Sum_probs=65.3

Q ss_pred             CCchhHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          128 DFAFSEYARVGRALALYEVGDRE---EAIAEMEDVSISLKGYP-EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       128 ~~~~~~~a~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~p-~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      -..+   +.+++|+++....+.+   +++..++..++..+... +.++.++..++.+ |+|++|+++.+.+|+++|++.+
T Consensus        37 vs~~---t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl-~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           37 ATIQ---SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             SCHH---HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CcHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcHH
Confidence            3456   8999999999987754   89999999977666554 8999999999995 5999999999999999999988


Q ss_pred             hhhhh
Q 027087          204 LSYVK  208 (228)
Q Consensus       204 ~~~~~  208 (228)
                      +.-.+
T Consensus       113 A~~Lk  117 (144)
T 1y8m_A          113 VGALK  117 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            75543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.09  E-value=0.006  Score=47.23  Aligned_cols=95  Identities=16%  Similarity=0.025  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCH-
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS------EYARVGRALALYEVGDREEAIAEMEDVSISLK---GYP-  167 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~p-  167 (228)
                      +++.-...+...|.|+.|+...+.++.+..++.++      .-+++.+|.+++..|+|..|...|+++|....   +++ 
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46777788899999999999999987765433320      11578899999999999999999999865432   111 


Q ss_pred             ---------------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087          168 ---------------------EVHAALAAALYVDKHALLLAENQFTI  193 (228)
Q Consensus       168 ---------------------~~~~~la~~l~~~~~~~~~A~~~~~~  193 (228)
                                           +..+-++.|+..+ +++++|+..++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l-~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL-KQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHT-TCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHH-CCHHHHHHHHhc
Confidence                                 6778889999885 588999996553

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.07  E-value=0.0055  Score=45.67  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          135 ARVGRALALYEVGDR---EEAIAEMEDVSISLKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       135 a~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      +.+++|+++....+.   .+++..++..++..+.. -+.++.++..++.+ |+|++|+++.+.+|+++|++..+.-.+.
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl-gdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            899999999998765   47999999997766544 38899999999995 5999999999999999999998765443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.48  E-value=0.14  Score=46.27  Aligned_cols=98  Identities=12%  Similarity=-0.037  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS-LKGYPEVHA  171 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~p~~~~  171 (228)
                      |...|..+-..+.+.|++++|+..|++..+.  .|+. .   .|..+-..|.+.|+.++|.+.|++.... +..+...+.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~---tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~  179 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-R---SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA  179 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-H---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-c---eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            5667888889999999999999999998775  3553 3   5788888999999999999999999442 223456677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          172 ALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       172 ~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      .+-.++.. .|+.++|.+.|++..+.
T Consensus       180 ~Li~~~~~-~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          180 ALLKVSMD-TKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhh-CCCHHHHHHHHHHHHHh
Confidence            77777777 56999999999988764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.39  E-value=0.027  Score=51.10  Aligned_cols=79  Identities=15%  Similarity=0.045  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL  177 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l  177 (228)
                      .+..+|.+......++.|..+|.+|+.+.|++..   .++.+|.+....|+.-+|+-+|-+++.....++.+..++...+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            4678899999999999999999999999999999   9999999999999999999999999766666778887777655


Q ss_pred             HH
Q 027087          178 YV  179 (228)
Q Consensus       178 ~~  179 (228)
                      -.
T Consensus       231 ~~  232 (497)
T 1ya0_A          231 SK  232 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.36  E-value=0.057  Score=47.15  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=73.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-------hhH------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087          100 LEKGRELQAIGDFNKALQYFTLVVENYKDFA-------FSE------------YARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus       100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-------~~~------------~a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      ...|......|+.++|++.+++|+.+-....       .|.            .+...++..+...|++++++..+++++
T Consensus       119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~  198 (388)
T 2ff4_A          119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT  198 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3445555667999999999999998863321       110            123356677888999999999999998


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087          161 ISLKGYPEVHAALAAALYVDKHALLLAENQFTIATL  196 (228)
Q Consensus       161 ~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~  196 (228)
                      ...|.+...+..+-.+++.. |+..+|++.|+++-+
T Consensus       199 ~~~P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          199 FEHPYREPLWTQLITAYYLS-DRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHSTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            88888888888888888884 578999999988744

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.035  Score=52.80  Aligned_cols=59  Identities=19%  Similarity=0.039  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087           98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus        98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      .+..-+.-+..+|+|+-|+..-++|+...|+...   .|+.|+.+|..+|+|+.|+-.+...
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~---tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFE---SWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH---HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH---HHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3444466677899999999999999999999999   9999999999999999999888775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.61  E-value=0.051  Score=47.43  Aligned_cols=61  Identities=11%  Similarity=0.010  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087           99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS  162 (228)
Q Consensus        99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  162 (228)
                      ...+...+...|++++++..+++++..+|-+..   ++..+-.+|+..|+..+|++.|++....
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~---~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREP---LWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345577788999999999999999999999999   8999999999999999999999998443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.60  E-value=0.084  Score=47.47  Aligned_cols=92  Identities=9%  Similarity=-0.078  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKD-FAFSEYARVGRALALYEVG-DREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~~~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      ..|...+....+.|+.+.|...|+++  ..|. ...   .+...+...+..| +.+.|...|+.++...+.+|+.+..+.
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~~~~---v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi  361 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL--GNEGVGPH---VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF  361 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCCHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCCChH---HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            34555555556678889999999998  3443 333   5566666666655 689999999999888888887766666


Q ss_pred             HHHHHhcCCHHHHHHHHHHH
Q 027087          175 AALYVDKHALLLAENQFTIA  194 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~a  194 (228)
                      ..... .|+.+.|+..|+++
T Consensus       362 d~e~~-~~~~~~aR~l~er~  380 (493)
T 2uy1_A          362 LFLLR-IGDEENARALFKRL  380 (493)
T ss_dssp             HHHHH-HTCHHHHHHHHHHS
T ss_pred             HHHHH-cCCHHHHHHHHHHH
Confidence            55544 34677777777776

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.53  E-value=0.22  Score=41.45  Aligned_cols=118  Identities=16%  Similarity=0.013  Sum_probs=78.6

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHHHcCCHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG-RALALYEVGDREE  151 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~-la~~~~~~g~~~~  151 (228)
                      .+-...++++......++.+|.|+.....+-..++-.|+|+.|++.++.+.+++|+...   .-.. +..+.        
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~---~a~~yr~lI~--------   76 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP---GASQLRHLVK--------   76 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHH--------
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH---HHHHHHHHHH--------
Confidence            45567788888888899999999999999999999999999999999999999998765   2211 21211        


Q ss_pred             HHHHHHHHHHhcC------CCHHHHHH-H-HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          152 AIAEMEDVSISLK------GYPEVHAA-L-AAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       152 A~~~~~~al~~~~------~~p~~~~~-l-a~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      |+. +++.+..-.      ..|..+.. + ........|+.++|.+.-.++++..|...
T Consensus        77 aE~-~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           77 AAQ-ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HHH-HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence            111 222211111      12222222 1 11111224688999999999999987644

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.45  E-value=0.3  Score=38.17  Aligned_cols=104  Identities=13%  Similarity=0.050  Sum_probs=71.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-c--------
Q 027087           93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS-L--------  163 (228)
Q Consensus        93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~--------  163 (228)
                      |+.++-...++..++-.|+|..++-.+.+     -+-..   +.+-...||...++|..|+..++..+.. +        
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~T---s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~  101 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCT---SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA  101 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence            33345567778889999999888876643     33345   6777889999999999999999998521 1        


Q ss_pred             --------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          164 --------KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       164 --------~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                              |.|-+..+.+-..+..+.|+.+||+.+|......+|=++..
T Consensus       102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A          102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence                    22334444443444455678899999999998888866554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.57  E-value=0.51  Score=39.23  Aligned_cols=58  Identities=17%  Similarity=0.075  Sum_probs=48.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087          105 ELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG  165 (228)
Q Consensus       105 ~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~  165 (228)
                      .+.+.|+.++|++.....++.+|.+.+   .+..+-..+.-.|+++.|.+.++-.....|.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~---~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDAS---LRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            356778899999999999999999988   8888888999999999999988888655553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.37  E-value=1.8  Score=38.90  Aligned_cols=118  Identities=8%  Similarity=-0.067  Sum_probs=83.1

Q ss_pred             CCCchHHHHHHHHHHhc--ChhhHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhc--CCCchhHHHHHHHHH
Q 027087           75 YDPLTQAEKDASAAVSS--RVSDALELLEKGRELQAIG---------DFNKALQYFTLVVENY--KDFAFSEYARVGRAL  141 (228)
Q Consensus        75 ~~~~~~a~~~~~~al~~--~p~~a~a~~~lG~~~~~~g---------~~~~Ai~~~~~Al~l~--P~~~~~~~a~~~la~  141 (228)
                      .+..+.|...+....+.  .| +...|..+-.++.+.+         +.++|.+.|++..+..  |+..    .+..+-.
T Consensus        39 ~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~----tyn~lI~  113 (501)
T 4g26_A           39 KGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA----TFTNGAR  113 (501)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH----HHHHHHH
Confidence            35566777777666532  33 4445555545554433         4789999999887653  5433    6888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          142 ALYEVGDREEAIAEMEDVSIS-LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       142 ~~~~~g~~~~A~~~~~~al~~-~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      .+.+.|+.++|.+.|+++... +..+...+..+-..+.. .|+.++|.+.|++..+..
T Consensus       114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~G  170 (501)
T 4g26_A          114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYEVDAHMVESE  170 (501)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHHHHHHHHhcC
Confidence            999999999999999998432 22345566666666766 569999999999998753

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.86  E-value=0.2  Score=44.30  Aligned_cols=102  Identities=12%  Similarity=-0.038  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHH---
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPEVH---  170 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~~~---  170 (228)
                      ..++..+|..+.+.||+++|++.|.++.............+++...++...+++..+...++++......  +++..   
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            4568899999999999999999999998876555433336777788888999999999999999554433  33322   


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          171 -AALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       171 -~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                       ...|.++.. .++|.+|-..|-.++.-.
T Consensus       211 k~~~gl~~l~-~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          211 KTYYGIHCLA-VRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHGGGG-TSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHH-hChHHHHHHHHHHHhccC
Confidence             223333333 478999999998887653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.47  E-value=1.4  Score=34.26  Aligned_cols=46  Identities=22%  Similarity=0.173  Sum_probs=36.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLV  122 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A  122 (228)
                      +++.+..+.|...+...     ++...|-.+|......|+++-|+.+|+++
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            55666666666665432     56778999999999999999999999885

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.18  E-value=0.95  Score=39.64  Aligned_cols=98  Identities=12%  Similarity=-0.026  Sum_probs=68.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCC--Cch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCHHHH---
Q 027087          100 LEKGRELQAIGDFNKALQYFTLVVENYKD--FAF-SEYARVGRALALYEVGDREEAIAEMEDVSISL---KGYPEVH---  170 (228)
Q Consensus       100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--~~~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~p~~~---  170 (228)
                      ..+|..|...|+|.+|+..+.+.++--..  +.. ---.+..-..+|..+|++.++...|.++....   ..+|...   
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            37899999999999999999998774332  111 00135666778999999999999999884332   2556322   


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHHHHHhc
Q 027087          171 AALAAALYV-DKHALLLAENQFTIATLL  197 (228)
Q Consensus       171 ~~la~~l~~-~~~~~~~A~~~~~~al~l  197 (228)
                      ...++.++. ..++|.+|-..|-++++-
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            223344444 467999999999888754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.92  E-value=0.44  Score=36.29  Aligned_cols=69  Identities=20%  Similarity=0.164  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE  168 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~  168 (228)
                      ...|...+.. ...+|.++|.+.|+.+++++..++.   .|...|....++|+.+.|.+.+.+++...+..-+
T Consensus        61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAK---iwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAF---VHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            3445555644 5669999999999999999888877   8999999999999999999999999665554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.90  E-value=1.3  Score=41.00  Aligned_cols=29  Identities=21%  Similarity=0.173  Sum_probs=17.8

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLV  122 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A  122 (228)
                      ++...|-++|..+.+.|+++.|+.+|.++
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34455666666666666666666666654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.80  E-value=1.2  Score=43.86  Aligned_cols=97  Identities=10%  Similarity=-0.123  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVE-----NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPEV  169 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-----l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~~  169 (228)
                      ..+..+-..+.+.|+.++|...|++..+     ..|+-.    .|+.+-..|.+.|+.++|.+.|++... ...  |.-.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdvv----TYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvT  202 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD----MYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLS  202 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHh----HHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHH
Confidence            3577778889999999999999976532     456644    688899999999999999999999933 333  3455


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          170 HAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      +..+-.++...|+..++|.+.|++..+..
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            56666667775544678889898887753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.44  E-value=0.57  Score=43.48  Aligned_cols=46  Identities=13%  Similarity=0.037  Sum_probs=36.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087          106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus       106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      ....|++++|.+..+     .-++..   .|.++|..+.+.|+++.|+++|.++
T Consensus       662 ~l~~~~~~~A~~~~~-----~~~~~~---~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLT-----DESAEM---KWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHT-----TCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHH-----hhCcHh---HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            345667776666543     335566   7999999999999999999999997

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.33  E-value=3.2  Score=32.46  Aligned_cols=71  Identities=14%  Similarity=0.012  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--c---------------CCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVEN--Y---------------KDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~---------------P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      ..-..+-...++.+.++|..|+..++..++-  +               |.+.  ++-+..+|.++.+.|+-+||+..+.
T Consensus        61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk--EfFy~l~a~lltq~g~r~EaI~y~~  138 (242)
T 3kae_A           61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE--EFFESLLGDLCTLSGYREEGIGHYV  138 (242)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH--HHHHHHHHHHHHHhcCHHHhhhHhh
Confidence            3444566689999999999999999999932  2               2233  3667889999999999999999999


Q ss_pred             HHHHhcCCCH
Q 027087          158 DVSISLKGYP  167 (228)
Q Consensus       158 ~al~~~~~~p  167 (228)
                      ......+..+
T Consensus       139 ~Sf~~~~lf~  148 (242)
T 3kae_A          139 RSFGKSFLFS  148 (242)
T ss_dssp             HHHHHCCCHH
T ss_pred             hhcCCccccc
Confidence            8865555444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.32  E-value=3.8  Score=38.91  Aligned_cols=114  Identities=11%  Similarity=-0.131  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------cCCCchhH-------HHHHHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQ--AI-GDFNKALQYFTLVVEN--------YKDFAFSE-------YARVGRA  140 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~--~~-g~~~~Ai~~~~~Al~l--------~P~~~~~~-------~a~~~la  140 (228)
                      +.++..+.+....+|.....+ ....+..  .. .+--+|+....++++-        .+.+....       -.+...+
T Consensus       266 ~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa  344 (754)
T 4gns_B          266 DFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT  344 (754)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence            557777778888888765433 2222222  22 3345677777777642        23332100       0233446


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087          141 LALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIA  194 (228)
Q Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~a  194 (228)
                      ..+...|+|+-|+++.++++...|.+-..|+.|+.+|..+ |+|+.|.-.+..+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l-~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKK-EEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh-ccHHHHHHHHhcC
Confidence            6677899999999999999999999999999999999995 5999999865544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.85  E-value=0.82  Score=41.31  Aligned_cols=66  Identities=18%  Similarity=0.074  Sum_probs=59.5

Q ss_pred             CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087           77 PLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~  145 (228)
                      ....|..+|..+..++|++...++.+|.+....|+.-+|+-+|-+++....-++.   +..|+...+..
T Consensus       167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~---a~~nL~~~f~~  232 (497)
T 1ya0_A          167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA---ASTNLQKALSK  232 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh---HHHHHHHHHHH
Confidence            3568888999999999999999999999999999999999999999988777888   89999887764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.59  E-value=9  Score=33.72  Aligned_cols=101  Identities=11%  Similarity=-0.024  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCc---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCCH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVEN-YKDFA---FSEYARVGRALALYEVGDREEAIAEMEDVSI---SLKGYP  167 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-~P~~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~p  167 (228)
                      .+.....++.++...|++.+|...+.....- .-...   .+. .+.....++...+++.+|...++++..   ..+.+|
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve-~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQ-FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            4555678899999999999999999887532 11111   112 356667788899999999999999732   233445


Q ss_pred             H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          168 E----VHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       168 ~----~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      +    .....|..+.. .++|.+|-.+|..+++.
T Consensus       215 ~lk~~~~~~~~~~~~~-e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLH-KREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhc
Confidence            3    22333444444 56899998888888764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.49  E-value=8.6  Score=33.50  Aligned_cols=60  Identities=18%  Similarity=0.033  Sum_probs=47.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087          138 GRALALYEVGDREEAIAEMEDVSISLKG--YP----EVHAALAAALYVDKHALLLAENQFTIATLLD  198 (228)
Q Consensus       138 ~la~~~~~~g~~~~A~~~~~~al~~~~~--~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~  198 (228)
                      .+|..|+..|+|.+|.+.+.+++.....  +.    +.+..-..++.. .+++.++...|+++....
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTA  169 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhh
Confidence            6899999999999999999999777654  22    555555666666 458999999999987654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.24  E-value=9.3  Score=37.77  Aligned_cols=98  Identities=14%  Similarity=0.034  Sum_probs=66.4

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcC--------------------CCchhHHHHHHHHHHHHHcCCHH
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVE-NYK--------------------DFAFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-l~P--------------------~~~~~~~a~~~la~~~~~~g~~~  150 (228)
                      -+.++...|.+|.++...|++++|..+|+++-. +..                    .+....| |+....++.+.|.++
T Consensus       838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~Y-Y~hv~~LFe~~~~~~  916 (1139)
T 4fhn_B          838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCY-YLHLSKKLFEESAYI  916 (1139)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHH-HHHHHHHHHHTSCCH
T ss_pred             ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHH-HHHHHHHHHHcCCHH
Confidence            345556679999999999999999999988721 001                    1111234 666777888889999


Q ss_pred             HHHHHHHHHHHhcCCC-HH----HHHHHHHHHHHhcCCHHHHHHHH
Q 027087          151 EAIAEMEDVSISLKGY-PE----VHAALAAALYVDKHALLLAENQF  191 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~-p~----~~~~la~~l~~~~~~~~~A~~~~  191 (228)
                      .+++..+.++.....+ ++    .+..+-...... ++|++|-..+
T Consensus       917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l-~~ye~Ay~aL  961 (1139)
T 4fhn_B          917 DALEFSLLADASKETDDEDLSIAITHETLKTACAA-GKFDAAHVAL  961 (1139)
T ss_dssp             HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH-CCSGGGGHHH
T ss_pred             HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh-CCHHHHHHHH
Confidence            9999999997766543 32    334444444453 5788886633

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 9e-06
 Identities = 8/84 (9%), Positives = 20/84 (23%), Gaps = 3/84 (3%)

Query: 99  LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMED 158
            +E        GDF  A ++   +     D        +  +   ++    + +      
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTG---VLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 159 VSISLKGYPEVHAALAAALYVDKH 182
                    E ++ L         
Sbjct: 59  AIKQNPLLAEAYSNLGNVYKERGQ 82

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 80  QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR 139
           +AE   + A+    + A  L       +  G+  +A++ +   +E + +FA    A    
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA---AAHSNL 345

Query: 140 ALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALY 178
           A  L + G  +EA+   ++ +I +   + + ++ +   L 
Sbjct: 346 ASVLQQQGKLQEALMHYKE-AIRISPTFADAYSNMGNTLK 384

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 80  QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR 139
            A      AV+   +     +  G  L+    F++A+  +   +    + A         
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA---VVHGNL 243

Query: 140 ALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP 199
           A   YE G  + AI            +P+ +  LA AL  +K ++  AE+ +  A  L P
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCP 302

Query: 200 HY 201
            +
Sbjct: 303 TH 304

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137
           + +A +    A+      A         LQ  G   +AL ++   +     FA    A  
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA---DAYS 377

Query: 138 GRALALYEVGD 148
                L E+ D
Sbjct: 378 NMGNTLKEMQD 388

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 7/129 (5%)

Query: 95  DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154
           +A+ L  +G       D+  AL  F+ V + +    F+             + +  EA  
Sbjct: 4   EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFN------IGCMYTILKNMTEAEK 57

Query: 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWP 214
                SI+   +  V       LY       LA      A +       + Y      + 
Sbjct: 58  AFTR-SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 116

Query: 215 PSLVSSLRH 223
                 L +
Sbjct: 117 LFACEVLYN 125

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 95  DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154
           D  +  E+G      GD   A+  F   V+          A         E      AI+
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM---EAWQYLGTTQAENEQELLAIS 74

Query: 155 EME 157
            + 
Sbjct: 75  ALR 77

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 10/107 (9%)

Query: 94  SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153
           +     L +G+  QA+    +A++                  R      L   GD E A 
Sbjct: 1   TQWKNALSEGQLQQALELLIEAIKASPKDAS----------LRSSFIELLCIDGDFERAD 50

Query: 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200
            ++         Y    + L   +   +     A+   T   L +  
Sbjct: 51  EQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.72
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.7
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.67
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.63
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.62
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.61
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.53
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.52
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.5
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.48
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.45
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.45
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.42
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.42
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.19
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.13
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.11
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.1
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.07
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.95
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.95
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.85
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.82
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.67
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.5
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.35
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.26
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.95
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.36
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	89.06
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.26

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-17  Score=121.74  Aligned_cols=107  Identities=19%  Similarity=0.143  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      ..-+.+.|+.+...|+|++|+..|+++++++|+++.   +++++|.++..+|++++|+..|++++...|.++.+++++|.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~   79 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   79 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh---hhhcccccccccccccccchhhhhHHHhccchhhHHHHHHH
Confidence            344678999999999999999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          176 ALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ++..+ |++++|+..|+++++++|++.....
T Consensus        80 ~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~  109 (117)
T d1elwa_          80 ALEFL-NRFEEAKRTYEEGLKHEANNPQLKE  109 (117)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHc-cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99885 5999999999999999999887644

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.4e-17  Score=133.45  Aligned_cols=122  Identities=18%  Similarity=0.076  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHh----cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           80 QAEKDASAAVS----SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        80 ~a~~~~~~al~----~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      .++..+...+.    .+++.+.+++++|.+|.+.|++++|+..|+++++++|+++.   +++++|.++..+|++++|+..
T Consensus        17 ~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~---a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---VFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH---HHhhhchHHHHHHHHHHhhhh
Confidence            33444455553    35678899999999999999999999999999999999999   999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      |++++...|.+++++.++|.++.. .|++++|+..|+++++++|++....
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~  142 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDPFRS  142 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHH-HhhHHHHHHHHHHHHhhccccHHHH
Confidence            999999999999999999999988 4689999999999999999877653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8e-17  Score=123.06  Aligned_cols=108  Identities=18%  Similarity=0.133  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      .+..+...|+.+++.|+|++|+..|+++++++|++..   +|+++|.++..+|++++|+..|++++...|.++.++..+|
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g   85 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---YYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   85 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh---hhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHH
Confidence            4556788999999999999999999999999999999   9999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++..+ |++++|+..|++++.++|++.....
T Consensus        86 ~~~~~~-g~~~eA~~~~~~a~~~~p~~~~~~~  116 (159)
T d1a17a_          86 ASNMAL-GKFRAALRDYETVVKVKPHDKDAKM  116 (159)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            999885 5899999999999999999988654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.9e-17  Score=128.40  Aligned_cols=106  Identities=18%  Similarity=0.065  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      ++..+.+.|+.+++.|+|++|+..|+++++++|+++.   +|+++|.+|..+|++++|+..|++++...|.++.+++.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~---~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            4667889999999999999999999999999999999   9999999999999999999999999888888999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .++..+ |++++|+..|+++++++|++...
T Consensus        80 ~~~~~l-~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          80 QCQLEM-ESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHC-CCHHHHHHHHHHHHHhCcccHHH
Confidence            999885 59999999999999999976553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.6e-17  Score=135.99  Aligned_cols=130  Identities=9%  Similarity=-0.043  Sum_probs=119.3

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      .+....+.|+..+..+++++|++..+|+++|.++...| ++++|+..++++++++|++..   +|+++|.++..+|++++
T Consensus        54 ~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~---a~~~~~~~~~~l~~~~e  130 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQ  130 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCCTT
T ss_pred             HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh---HHHHHhHHHHhhccHHH
Confidence            34566789999999999999999999999999999876 599999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |+..+++++...|.+..++.++|.++... +++++|++.|+++|+++|++..++.
T Consensus       131 Al~~~~kal~~dp~n~~a~~~~~~~~~~~-~~~~~Al~~~~~al~~~p~n~~a~~  184 (315)
T d2h6fa1         131 ELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRNNSVWN  184 (315)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHhhhhhhhhcchHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHCCccHHHHH
Confidence            99999999999999999999999988885 5889999999999999999988654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.8e-16  Score=131.51  Aligned_cols=131  Identities=16%  Similarity=0.088  Sum_probs=100.3

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|+..+.++++++|+++.+++++|.++...|++++|+..|++++...|++..   .+..+|.++...|++++|
T Consensus       248 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A  324 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---SLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch---hhhHHHHHHHHCCCHHHH
Confidence            34555667777777777778888888888888888888888888888888888887777   778888888888888888


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      ++.|++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++.++++.
T Consensus       325 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         325 VRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHTTSCTTCHHHHHHHHHHHHTT-TCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            8888888776777777788888877764 47788888888888888877766543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.6e-16  Score=121.31  Aligned_cols=124  Identities=22%  Similarity=0.209  Sum_probs=106.4

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA  152 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A  152 (228)
                      ...+..+.|+..+..   +.+.++.+++++|.++..+|++++|+..|++|++++|+++.   +++++|.++.++|++++|
T Consensus        16 ~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~---a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          16 ADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---AYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             HHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh---hHHHHHHHHHhhccHHHH
Confidence            344556666666553   46678899999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHhcCCC----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          153 IAEMEDVSISLKGY----------------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       153 ~~~~~~al~~~~~~----------------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      ++.|++++...+.+                .++++++|.++.. .|++++|++.|++++++.|+...
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcch
Confidence            99999997654433                2678899998888 46899999999999999997544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7e-16  Score=128.54  Aligned_cols=125  Identities=18%  Similarity=0.057  Sum_probs=110.6

Q ss_pred             chHHHHHHHHHHhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           78 LTQAEKDASAAVSSRVS--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      ...+...+..+++.+|+  ++.+++.+|.++...|++++|+..|++++..+|++..   +++++|.++..+|++++|+..
T Consensus       152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~  228 (323)
T d1fcha_         152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---LWNKLGATLANGNQSEEAVAA  228 (323)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccccccc---chhhhhhcccccccchhHHHH
Confidence            34566667778888876  4788999999999999999999999999999999999   999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |++++...|.++++++.+|.++..+ |++++|+..|+++|+++|++....+
T Consensus       229 ~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         229 YRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcChhhhh
Confidence            9999999999999999999999995 5899999999999999999877544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.5e-15  Score=121.26  Aligned_cols=93  Identities=23%  Similarity=0.225  Sum_probs=86.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ....+..+.|+..+.++++++|+++.+++++|.++..+|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus        47 y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~g~~~~  123 (259)
T d1xnfa_          47 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AHLNRGIALYYGGRDKL  123 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhh---hHHHHHHHHHHHhhHHH
Confidence            456788899999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH
Q 027087          152 AIAEMEDVSISLKGYP  167 (228)
Q Consensus       152 A~~~~~~al~~~~~~p  167 (228)
                      |+..|++++...|.++
T Consensus       124 A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_         124 AQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhccccH
Confidence            9999999987655544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-15  Score=110.52  Aligned_cols=102  Identities=19%  Similarity=0.124  Sum_probs=96.4

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +...+..+.|+..+..+++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.   +++++|.++..+|++++
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---GYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhh---HHHHHHHHHHHccCHHH
Confidence            456678899999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAA  176 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~  176 (228)
                      |+..|++++...|.+++++..++.+
T Consensus        90 A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          90 AKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999988877764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.5e-16  Score=114.22  Aligned_cols=104  Identities=16%  Similarity=0.084  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE------  168 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~------  168 (228)
                      .+..+-++|+.+++.|+|++|+.+|+++++++|++..   +++++|.+|..+|++++|+..+++++...|.++.      
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a   79 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4567889999999999999999999999999999999   9999999999999999999999999888887764      


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087          169 -VHAALAAALYVDKHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       169 -~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~  202 (228)
                       ++..+|.++.. .+++++|+..|++++..+++..
T Consensus        80 ~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~~~~~  113 (128)
T d1elra_          80 KAYARIGNSYFK-EEKYKDAIHFYNKSLAEHRTPD  113 (128)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCHH
Confidence             44455565655 3699999999999999987643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.64  E-value=2.1e-15  Score=108.95  Aligned_cols=95  Identities=18%  Similarity=0.079  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAA  176 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~  176 (228)
                      ..++++|.++.+.|++++|+..|+++++++|+++.   +++++|.++...|++++|+..|++++...|.+++++..+|.+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~   93 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   93 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccch---hhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHH
Confidence            34689999999999999999999999999999999   999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 027087          177 LYVDKHALLLAENQFTIAT  195 (228)
Q Consensus       177 l~~~~~~~~~A~~~~~~al  195 (228)
                      +..+| ++++|++.+++.|
T Consensus        94 y~~~g-~~~~A~~~l~~~l  111 (112)
T d1hxia_          94 HTNEH-NANAALASLRAWL  111 (112)
T ss_dssp             HHHHH-HHHHHHHHHHHHH
T ss_pred             HHHCC-CHHHHHHHHHHHh
Confidence            99964 8999999999876

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=129.04  Aligned_cols=131  Identities=9%  Similarity=-0.005  Sum_probs=119.9

Q ss_pred             hhCCC-chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           73 ATYDP-LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        73 ~~~~~-~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..++. .+.++.++..+++.+|++..+|+++|.++.++|++++|+..|+++++++|++..   +|+++|.++...|++++
T Consensus        88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~---a~~~~~~~~~~~~~~~~  164 (315)
T d2h6fa1          88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH---AWQHRQWVIQEFKLWDN  164 (315)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCCTT
T ss_pred             HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchH---HHHHHHHHHHHHHhhHH
Confidence            44554 588899999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVDK-----HALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~-----~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |+..|++++...|.+..++.++|.++...+     +.+++|++.+.++++++|++..+..
T Consensus       165 Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~  224 (315)
T d2h6fa1         165 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN  224 (315)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHH
Confidence            999999999999999999999999887754     2378999999999999999887643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-14  Score=121.03  Aligned_cols=149  Identities=15%  Similarity=0.018  Sum_probs=126.1

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      ..+..+.++..+......++.++..++.+|.++...|++++|+..|+++++++|+++.   +++++|.++...|++++|+
T Consensus       215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A~  291 (388)
T d1w3ba_         215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAE  291 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---HHHHHHHHHHHHSCHHHHH
T ss_pred             ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHH
Confidence            4455667777778888889999999999999999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh-----hhcCCCChhHHHHHHHhhcc
Q 027087          154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV-----KDTKHWPPSLVSSLRHFITL  227 (228)
Q Consensus       154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  227 (228)
                      +.+++++...|.++..+..++.++.. .|++++|+..|+++++++|++..+++.     ....++. ..+..+++++++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~l  368 (388)
T d1w3ba_         292 DCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ-EALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH-HHHHHHHHHHTT
T ss_pred             HHHHhhhccCCccchhhhHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh
Confidence            99999988888899999999998877 568999999999999999999887552     2323333 345666666654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-14  Score=110.78  Aligned_cols=116  Identities=16%  Similarity=0.025  Sum_probs=102.0

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +.+....+.|+..+..+++.+|+++..|+++|.++...|++++|+..|+++++++|++..   +++++|.++..+|++++
T Consensus        20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~---a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchH---HHHHHHHHHHHcCCHHH
Confidence            345677889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cCCHHHHHHH
Q 027087          152 AIAEMEDVSISLKGYPEVHAALAAALYVD-KHALLLAENQ  190 (228)
Q Consensus       152 A~~~~~~al~~~~~~p~~~~~la~~l~~~-~~~~~~A~~~  190 (228)
                      |+.+|++++...|.+++++..++.+.... .+.+++|+..
T Consensus        97 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          97 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999998888777654332 2345556543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.2e-15  Score=113.32  Aligned_cols=110  Identities=14%  Similarity=0.063  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF------------SEYARVGRALALYEVGDREEAIAEMEDVSISL  163 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~------------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  163 (228)
                      +..+.+.|+.+++.|+|++|+..|++++...|....            ...++.|+|.+|+++|++++|+..+++++...
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            667789999999999999999999999999886532            01257899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      |.++.+++.+|.+++.+ |++++|+..|+++++++|++..+..
T Consensus        93 p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~P~n~~~~~  134 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKT  134 (170)
T ss_dssp             TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             ccchhhhHHHHHHHHHh-hhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999985 5899999999999999999887643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.57  E-value=3.7e-14  Score=107.71  Aligned_cols=112  Identities=18%  Similarity=0.120  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-------------EYARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-------------~~a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      +.+..+...|+.+++.|+|.+|+..|++++...+.....             ...+.|+|.+|+++|++++|+..+++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            345668889999999999999999999999887654321             1257899999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          161 ISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       161 ~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ...|.+..+++.+|.++..+ |++++|+..|+++++++|++..+..
T Consensus        95 ~~~p~~~ka~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~n~~~~~  139 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRN  139 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999996 5999999999999999999887643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.6e-15  Score=108.69  Aligned_cols=106  Identities=14%  Similarity=-0.019  Sum_probs=89.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCC--HHHHHHHH
Q 027087          100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG---DREEAIAEMEDVSISLKGY--PEVHAALA  174 (228)
Q Consensus       100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~--p~~~~~la  174 (228)
                      -++.+.+...+++++|++.|++++.++|+++.   +++|+|.++...+   ++++|+..|++++...+.+  +++++++|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~---~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS---TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH---HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            35677888999999999999999999999999   9999999998755   4567999999994433322  25789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          175 AALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      .+++.+ |++++|+++|+++|+++|++..+....+
T Consensus        80 ~~y~~~-g~~~~A~~~~~~aL~~~P~~~~A~~l~~  113 (122)
T d1nzna_          80 VGNYRL-KEYEKALKYVRGLLQTEPQNNQAKELER  113 (122)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHH-hhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            999885 6999999999999999999998765443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-13  Score=115.01  Aligned_cols=82  Identities=16%  Similarity=-0.015  Sum_probs=42.8

Q ss_pred             hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI  153 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~  153 (228)
                      +.+..+.|+..+..+++.+|+++.+|+++|.++...|++++|+..|+++++++|++..   +++++|.++...|++++|+
T Consensus        31 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~  107 (323)
T d1fcha_          31 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT---ALMALAVSFTNESLQRQAC  107 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccc---ccccccccccccccccccc
Confidence            3344555555555555555555555555555555555555555555555555555544   4444444444444444444


Q ss_pred             HHHHH
Q 027087          154 AEMED  158 (228)
Q Consensus       154 ~~~~~  158 (228)
                      +.+++
T Consensus       108 ~~~~~  112 (323)
T d1fcha_         108 EILRD  112 (323)
T ss_dssp             HHHHH
T ss_pred             cchhh
Confidence            33333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.54  E-value=7.4e-14  Score=107.45  Aligned_cols=112  Identities=13%  Similarity=0.016  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087           94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS------------EYARVGRALALYEVGDREEAIAEMEDVSI  161 (228)
Q Consensus        94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~------------~~a~~~la~~~~~~g~~~~A~~~~~~al~  161 (228)
                      +.+..+...|+.+++.|+|++|+..|++++...+.....            .-.+.|+|.||+.+|++++|+..+++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            346778899999999999999999999999876654320            12478999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          162 SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       162 ~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ..|.++.+++.+|.++..+ |++++|+..|+++++++|++..+..
T Consensus        93 l~p~~~~a~~~~~~~~~~l-~~~~~A~~~~~~al~l~P~n~~~~~  136 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARL  136 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             cccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999885 5899999999999999999987633

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9e-14  Score=109.45  Aligned_cols=101  Identities=15%  Similarity=0.007  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA  175 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~  175 (228)
                      +..+++.|..+...|+|++|++.|+++   .|.++.   +++|+|.+|..+|++++|+.+|++++...|.++.+++++|.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~---~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~   78 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            445789999999999999999999874   666778   89999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          176 ALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      +++.+ |++++|+..|++++...+.+..
T Consensus        79 ~~~~~-g~~~~A~~~~~kAl~~~~~n~~  105 (192)
T d1hh8a_          79 LYYQT-EKYDLAIKDLKEALIQLRGNQL  105 (192)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHTTTTCSE
T ss_pred             HHHhh-ccHHHHHHHHHHHHHhCccCch
Confidence            99885 5999999999999998887654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=4.6e-14  Score=108.51  Aligned_cols=106  Identities=10%  Similarity=-0.004  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVVEN----------------YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVS  160 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l----------------~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al  160 (228)
                      ..+...|..+...|+|++|+..|++++++                +|.+..   .+.|+|.++.++|++++|+..|++++
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS---CVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHH---HHHHHHHHHHhhcccchhhhhhhhhh
Confidence            34678899999999999999999999865                345555   78999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          161 ISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       161 ~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      ...|.++.+++.+|.++..+ |++++|+..|+++++++|++..+..
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l-~~~~~A~~~~~~al~l~p~n~~~~~  149 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQA  149 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999985 5899999999999999999877543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3.8e-14  Score=110.21  Aligned_cols=93  Identities=14%  Similarity=-0.028  Sum_probs=86.9

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +.+.+..+.|+..+..+++++|+++.+|+++|.+|.+.|+|++|+..|++|++++|++..   +|+++|.+|..+|++++
T Consensus        14 ~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~---a~~~lg~~~~~l~~~~~   90 (201)
T d2c2la1          14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHFFLGQCQLEMESYDE   90 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHH---HHHHHHHHHHHCCCHHH
Confidence            456678999999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH
Q 027087          152 AIAEMEDVSISLKGYP  167 (228)
Q Consensus       152 A~~~~~~al~~~~~~p  167 (228)
                      |+..|++++...|.+.
T Consensus        91 A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          91 AIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccH
Confidence            9999999977666443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.50  E-value=2.7e-14  Score=107.77  Aligned_cols=99  Identities=20%  Similarity=0.029  Sum_probs=77.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087          105 ELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV----------GDREEAIAEMEDVSISLKGYPEVHAALA  174 (228)
Q Consensus       105 ~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~p~~~~~la  174 (228)
                      .+.+.+.|++|+..|+++++++|++++   +++++|.++...          +++++|+..|++++...|.++++++++|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~---~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDAD---NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence            355677788888888888888888888   888888888753          4457788888888888888888888888


Q ss_pred             HHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          175 AALYVDK----------HALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       175 ~~l~~~~----------~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .++..++          +.+++|++.|+++++++|++...+.
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~  124 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  124 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHH
Confidence            8776643          3578899999999999998876544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=1.2e-13  Score=104.08  Aligned_cols=101  Identities=15%  Similarity=-0.042  Sum_probs=89.4

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAI----------GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~----------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~  145 (228)
                      ...+.|+..+..+++++|+++.+++++|.++...          +++++|+..|+++++++|++..   +++++|.+|..
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~---a~~~lG~~y~~   87 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---AVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH---HHhhHHHHHHH
Confidence            3357888999999999999999999999999754          5568999999999999999999   99999999988


Q ss_pred             cCC-----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          146 VGD-----------REEAIAEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       146 ~g~-----------~~~A~~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      +|+           +++|++.|++++...|.++..+..++.+...
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            764           6999999999999999999888888776544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-12  Score=100.50  Aligned_cols=105  Identities=17%  Similarity=0.001  Sum_probs=91.5

Q ss_pred             hCCCchHHHHHHHHHHhcChh---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRVS---------------DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG  138 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~---------------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~  138 (228)
                      +.+..+.|+..+..+++..+.               ....+.++|.++.++|+|++|+..++++++++|++..   ++++
T Consensus        25 ~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~---a~~~  101 (170)
T d1p5qa1          25 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK---GLSR  101 (170)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchh---hhHH
Confidence            446677788888888755443               2356789999999999999999999999999999999   9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087          139 RALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK  181 (228)
Q Consensus       139 la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~  181 (228)
                      +|.+++.+|++++|+..|++++...|.++++...++.+.....
T Consensus       102 ~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1         102 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988888766544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=1.1e-12  Score=100.48  Aligned_cols=88  Identities=14%  Similarity=0.033  Sum_probs=82.3

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV  169 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~  169 (228)
                      ..+|.+...++++|.++.++|+|++|+..|+++++++|+++.   +++++|.+|..+|++++|+..|++++...|.++++
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~---a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~  147 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI  147 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh---HHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            557888899999999999999999999999999999999999   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027087          170 HAALAAALYVD  180 (228)
Q Consensus       170 ~~~la~~l~~~  180 (228)
                      ...++.+....
T Consensus       148 ~~~l~~~~~~l  158 (169)
T d1ihga1         148 QAELLKVKQKI  158 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888876553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.45  E-value=3.4e-13  Score=97.01  Aligned_cols=86  Identities=9%  Similarity=-0.078  Sum_probs=81.5

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      ..+.+..+.|+..++.++..+|+++.+|+++|.++.+.|++++|+..|+++++++|++..   +++++|.+|..+|++++
T Consensus        26 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA---VHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccccc---chHHHHHHHHHCCCHHH
Confidence            345677889999999999999999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHH
Q 027087          152 AIAEMEDVS  160 (228)
Q Consensus       152 A~~~~~~al  160 (228)
                      |++.+++.|
T Consensus       103 A~~~l~~~l  111 (112)
T d1hxia_         103 ALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999973

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.44  E-value=1.7e-12  Score=99.64  Aligned_cols=121  Identities=12%  Similarity=-0.060  Sum_probs=97.7

Q ss_pred             hCCCchHHHHHHHHHHhc---------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSS---------------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG  138 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~---------------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~  138 (228)
                      +.+....|+..+..++..               ++.....+.|+|.++..+|++++|+..+++++.++|++..   ++++
T Consensus        27 ~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~---a~~~  103 (168)
T d1kt1a1          27 KGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK---GLYR  103 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHH---HHHH
Confidence            445567777777776621               2223456789999999999999999999999999999999   9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087          139 RALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL  197 (228)
Q Consensus       139 la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l  197 (228)
                      +|.++..+|++++|+.+|++++...|.++.+...++.+....+...+...+.|.+.++.
T Consensus       104 ~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1         104 RGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999998888887655443334556666555543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.42  E-value=2.8e-13  Score=102.78  Aligned_cols=108  Identities=14%  Similarity=0.032  Sum_probs=88.2

Q ss_pred             HHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087           96 ALELL--EKGRELQAIGDFNKALQYFTLVVENYKDFAFS---------EYARVGRALALYEVGDREEAIAEMEDVSISLK  164 (228)
Q Consensus        96 a~a~~--~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~  164 (228)
                      +.++.  ..|..++..|+|++|+..|+++++++|+.++.         +-++.|+|.+|..+|++++|+..+++++...+
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            44444  44889999999999999999999999986531         12688999999999999999999999976543


Q ss_pred             C----C-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          165 G----Y-------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       165 ~----~-------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      .    +       ..+++++|.++..+ |++++|+..|++++++.|+....
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~l-g~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             ccccccccccchhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhhHHhhch
Confidence            2    1       14678899998885 58999999999999998866553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.6e-13  Score=98.16  Aligned_cols=101  Identities=11%  Similarity=-0.001  Sum_probs=88.2

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHcCCHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAI---GDFNKALQYFTLVVENYKDF--AFSEYARVGRALALYEVGDRE  150 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~---g~~~~Ai~~~~~Al~l~P~~--~~~~~a~~~la~~~~~~g~~~  150 (228)
                      +..+.|+..+..++.++|+++.+++++|.++.+.   +++++|+..|+++++.+|++  ..   +++++|.+|+++|+++
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~---~~~~Lg~~y~~~g~~~   89 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---YVFYLAVGNYRLKEYE   89 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHH---HHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHH---HHHHHHHHHHHHhhhH
Confidence            4467788899999999999999999999999864   45567999999999998765  45   7999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          151 EAIAEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      +|+++|++++...|.++++...++.+.-.
T Consensus        90 ~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          90 KALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            99999999999999999988777765443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-12  Score=91.32  Aligned_cols=83  Identities=13%  Similarity=0.101  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087           96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF----SEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA  171 (228)
Q Consensus        96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~  171 (228)
                      ++..|++|.+++++|+|++|+..|++|+++.|++..    ...++.++|.+++++|++++|+..|++++...|.+++++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            456899999999999999999999999999876531    1127899999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027087          172 ALAAALY  178 (228)
Q Consensus       172 ~la~~l~  178 (228)
                      +++.+..
T Consensus        85 Nl~~~~~   91 (95)
T d1tjca_          85 NLKYFEY   91 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.33  E-value=1.3e-11  Score=93.19  Aligned_cols=103  Identities=14%  Similarity=0.014  Sum_probs=86.6

Q ss_pred             hCCCchHHHHHHHHHHhcCh----------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHH
Q 027087           74 TYDPLTQAEKDASAAVSSRV----------------SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV  137 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p----------------~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~  137 (228)
                      +.+....|+..+..++..-+                -....+.|+|.++.++|++++|+..++++++++|++..   +++
T Consensus        29 ~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~k---a~~  105 (153)
T d2fbna1          29 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK---ALY  105 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhh---hhH
Confidence            34556667777777663222                12346789999999999999999999999999999999   999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          138 GRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       138 ~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      ++|.++..+|++++|+.+|++++...|.++++...+..+...
T Consensus       106 ~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1         106 KLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988887776544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.5e-11  Score=88.11  Aligned_cols=99  Identities=13%  Similarity=0.066  Sum_probs=84.2

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHHHcCC
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS----EYARVGRALALYEVGD  148 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~----~~a~~~la~~~~~~g~  148 (228)
                      ......+.|+..+..+++++|+++.+++++|.++.++|+|++|+..|+++++++|++...    +.+++++|.++..+++
T Consensus        15 ~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~   94 (128)
T d1elra_          15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK   94 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            344667899999999999999999999999999999999999999999999999988652    1256778889999999


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHH
Q 027087          149 REEAIAEMEDVSISLKGYPEVHAA  172 (228)
Q Consensus       149 ~~~A~~~~~~al~~~~~~p~~~~~  172 (228)
                      +++|+..|++++.. ..+++....
T Consensus        95 ~~~A~~~~~kal~~-~~~~~~~~~  117 (128)
T d1elra_          95 YKDAIHFYNKSLAE-HRTPDVLKK  117 (128)
T ss_dssp             HHHHHHHHHHHHHH-CCCHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCCHHHHHH
Confidence            99999999999654 445655443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=4.3e-11  Score=100.23  Aligned_cols=128  Identities=6%  Similarity=-0.187  Sum_probs=107.8

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAI----------GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE  145 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~----------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~  145 (228)
                      .-.+.++..+..+++.+|++..+|+.++.++...          |++++|+..|+++++.+|++..   +|+++|.++..
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~---~~~~~~~~~~~  119 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TWHHRCWLLSR  119 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH---HHHHhhHHHHH
Confidence            3357888889999999999999998887776544          4489999999999999999999   99999999988


Q ss_pred             cCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          146 VGD--REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       146 ~g~--~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      .|+  +++|+..+++++...+.+..++..+....+...+.+++|+..++++++++|++..++.
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~  182 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence            765  8999999999999888888776655444444467899999999999999999888754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=2.1e-10  Score=89.07  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=94.4

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-------------------HHHHHHHHHHHHHcCCHHHH
Q 027087           92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-------------------EYARVGRALALYEVGDREEA  152 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-------------------~~a~~~la~~~~~~g~~~~A  152 (228)
                      |-+..+.+++.|..+...|++++|+..|++|+++.++....                   ..++.+++.++..+|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            44556788999999999999999999999999998865321                   02678999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhcCCCC
Q 027087          153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIA-------TLLDPHY  201 (228)
Q Consensus       153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~a-------l~l~P~~  201 (228)
                      +.++++++...|.+..++..++.++.. .|++++|++.|+++       +.++|..
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~-~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            999999999999999999999999998 46899999999998       5567753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.5e-12  Score=110.99  Aligned_cols=114  Identities=7%  Similarity=-0.104  Sum_probs=74.5

Q ss_pred             HHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087           87 AAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY  166 (228)
Q Consensus        87 ~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  166 (228)
                      ..+.++|++...+.++|.++.+.|++++|+..+++++..+|.  .   +++++|.++...|++++|+.+|++++...|.+
T Consensus       111 ~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~---~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~  185 (497)
T d1ya0a1         111 TVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--H---CLVHLGDIARYRNQTSQAESYYRHAAQLVPSN  185 (497)
T ss_dssp             C-------------------------------CCHHHHHHHH--H---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB
T ss_pred             HHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--H---HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            334788999999999999999999999999999999988764  4   78999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087          167 PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY  206 (228)
Q Consensus       167 p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~  206 (228)
                      +.+++.+|.++.. .|++.+|+.+|.++|.++|.++.++.
T Consensus       186 ~~~~~~Lg~~~~~-~~~~~~A~~~y~ral~~~~~~~~a~~  224 (497)
T d1ya0a1         186 GQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAAST  224 (497)
T ss_dssp             SHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred             hHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence            9999999998888 56889999999999999999887644

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.13  E-value=4.5e-11  Score=98.56  Aligned_cols=127  Identities=13%  Similarity=-0.012  Sum_probs=105.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE  151 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~  151 (228)
                      +.+.+..++++..+.++++.+|+|+..+.++|.++...|++++|++.|+++++++|++..   ++.+++.++...++.++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~---~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP---GASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHhccccHH
Confidence            345567889999999999999999999999999999999999999999999999999999   89999999988888877


Q ss_pred             HHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          152 AIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       152 A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +...+.+..  ...+|   ..+...+.++.. .|++++|++.++++.++.|+.+..
T Consensus        83 a~~~~~~~~--~~~~p~~~~~~l~~a~~~~~-~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          83 FAQGAATAK--VLGENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HTTSCCCEE--CCCSCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHhhhhh--cccCchHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCCcc
Confidence            766655431  22223   344445565655 568999999999999999988764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=9.1e-10  Score=90.71  Aligned_cols=132  Identities=10%  Similarity=-0.047  Sum_probs=105.1

Q ss_pred             hhCCCchHHHHHHHHHHhc------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHH
Q 027087           73 ATYDPLTQAEKDASAAVSS------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALAL  143 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~  143 (228)
                      ......+.|...+.+++++      .++.+..+.++|.+|.++|++++|+..|++++++.++...   ...++.++|.++
T Consensus        48 ~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  127 (290)
T d1qqea_          48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL  127 (290)
T ss_dssp             HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhH
Confidence            3456678888888888754      2445678999999999999999999999999998766521   123788999888


Q ss_pred             HH-cCCHHHHHHHHHHHHHhcCCC--H----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087          144 YE-VGDREEAIAEMEDVSISLKGY--P----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS  205 (228)
Q Consensus       144 ~~-~g~~~~A~~~~~~al~~~~~~--p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~  205 (228)
                      .. .|++++|+..|++++...+..  +    .++..+|.++.. .|+|++|+..|++++...++.....
T Consensus       128 ~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~-~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH-cChHHHHHHHHHHHHHhCccchhhh
Confidence            66 699999999999997654422  2    557778998888 5699999999999999999887644

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=2.2e-11  Score=102.03  Aligned_cols=104  Identities=8%  Similarity=-0.099  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCchhHHHH-HHHHHHHHHcCCHHHHHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGD--FNKALQYFTLVVENYKDFAFSEYAR-VGRALALYEVGDREEAIAE  155 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~--~~~Ai~~~~~Al~l~P~~~~~~~a~-~~la~~~~~~g~~~~A~~~  155 (228)
                      ..++.++..+++.+|++..+++.+|.++...++  +++|+..++++++++|.+..   ++ ..+|.++...|++++|+..
T Consensus        90 ~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhh---hhhhHHHHHHHhccccHHHHHH
Confidence            456667778889999999999999999987764  89999999999999999988   65 5778999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Q 027087          156 MEDVSISLKGYPEVHAALAAALYVDKHALLL  186 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~  186 (228)
                      +++++...|.+..++.++|.++..++ ++++
T Consensus       167 ~~~~i~~~p~~~~a~~~l~~~~~~~~-~~~~  196 (334)
T d1dcea1         167 TDSLITRNFSNYSSWHYRSCLLPQLH-PQPD  196 (334)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHS-CCCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc-CHHH
Confidence            99998888999999999999888854 4343

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.9e-10  Score=78.26  Aligned_cols=72  Identities=19%  Similarity=-0.004  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDVSISLKGY-------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV  207 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~  207 (228)
                      ..+++|.++++.|+|++|+..|++++...+.+       .+++.++|.+++.. |++++|+..|+++|+++|++..+...
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~-g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc-CChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            57899999999999999999999998877654       37899999999995 58999999999999999999987553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=8.7e-09  Score=84.64  Aligned_cols=132  Identities=18%  Similarity=0.098  Sum_probs=97.5

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCC---chhHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQA-IGDFNKALQYFTLVVENYKDF---AFSEYARVGRAL  141 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~-~g~~~~Ai~~~~~Al~l~P~~---~~~~~a~~~la~  141 (228)
                      ..+.+..+.++..+..++++.++.      ..++.++|.++.. .|++++|+..|++++++.+..   .....++.++|.
T Consensus        87 y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~  166 (290)
T d1qqea_          87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD  166 (290)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Confidence            445667778888888887554443      6778899999876 699999999999999885443   221236899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          142 ALYEVGDREEAIAEMEDVSISLKGYP-------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       142 ~~~~~g~~~~A~~~~~~al~~~~~~p-------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ++..+|+|++|+..|++++...+.++       ..+...+.++.. .++++.|...|+++++++|.+...
T Consensus       167 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCccch
Confidence            99999999999999999977666554       334455666655 568999999999999999987764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.95  E-value=9.5e-10  Score=82.76  Aligned_cols=93  Identities=20%  Similarity=0.210  Sum_probs=76.7

Q ss_pred             hCCCchHHHHHHHHHHhcChh------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc--------hhH
Q 027087           74 TYDPLTQAEKDASAAVSSRVS------------DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA--------FSE  133 (228)
Q Consensus        74 ~~~~~~~a~~~~~~al~~~p~------------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~--------~~~  133 (228)
                      ..+..+.|+..+..+++++|+            .+.+|.++|.++..+|+|++|+..+++++++.|...        ...
T Consensus        21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhH
Confidence            345688899999999976654            357899999999999999999999999999865321        112


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087          134 YARVGRALALYEVGDREEAIAEMEDVSISLKGY  166 (228)
Q Consensus       134 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  166 (228)
                      .+++++|.+|..+|++++|+..|++++...+..
T Consensus       101 ~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         101 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            368999999999999999999999997776644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.6e-09  Score=94.83  Aligned_cols=99  Identities=15%  Similarity=0.032  Sum_probs=80.5

Q ss_pred             CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087           76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE  155 (228)
Q Consensus        76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~  155 (228)
                      +..+.+...+..++..++  ..+++++|.++..+|++++|+.+|++|++++|++..   +++++|.++...|++.+|+.+
T Consensus       134 ~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~---~~~~Lg~~~~~~~~~~~A~~~  208 (497)
T d1ya0a1         134 THTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---PYNQLAILASSKGDHLTTIFY  208 (497)
T ss_dssp             ---------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---HHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH---HHHHHHHHHHHcCCHHHHHHH
Confidence            334444444555555444  467899999999999999999999999999999999   999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHH
Q 027087          156 MEDVSISLKGYPEVHAALAAALYV  179 (228)
Q Consensus       156 ~~~al~~~~~~p~~~~~la~~l~~  179 (228)
                      |.+++...+.++.++.+|+.++-.
T Consensus       209 y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         209 YCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHH
Confidence            999988888899999999876544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.2e-08  Score=82.76  Aligned_cols=109  Identities=15%  Similarity=-0.040  Sum_probs=89.0

Q ss_pred             cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-
Q 027087           91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS--EYARVGRALALYEVGDREEAIAEMEDVSISLKGYP-  167 (228)
Q Consensus        91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-  167 (228)
                      .++.+++....+|.++...|++++|+..|+++++..|++...  ..++.++|.++..+|++++|+..|++++...+..+ 
T Consensus         7 ~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_           7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            355667788889999999999999999999999999987431  12688999999999999999999999976554332 


Q ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087          168 -----EVHAALAAALYVDKHALLLAENQFTIATLLDPH  200 (228)
Q Consensus       168 -----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~  200 (228)
                           .....++.++.. .+++..+...+.+++.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~al~~~~~  123 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFA-QGFLQTAWETQEKAFQLINE  123 (366)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHh
Confidence                 455667777777 56899999999999987543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=3.6e-08  Score=79.88  Aligned_cols=132  Identities=14%  Similarity=0.079  Sum_probs=107.1

Q ss_pred             HhhCCCchHHHHHHHHHHhcChhh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHH
Q 027087           72 AATYDPLTQAEKDASAAVSSRVSD-----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALAL  143 (228)
Q Consensus        72 a~~~~~~~~a~~~~~~al~~~p~~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~  143 (228)
                      +...+..+.|+..+..+++..|++     ..+++++|.++..+|++++|+..|++++++.+....   ...++.+++.++
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  101 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            445677889999999999888876     467899999999999999999999999998765432   223678999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          144 YEVGDREEAIAEMEDVSISLKGY--------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       144 ~~~g~~~~A~~~~~~al~~~~~~--------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      ...|++.+|+..+.+++...+..        ......+|.+++. .|+++++...+++++...+.....
T Consensus       102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_         102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH-hcchhhhHHHHHHHHHHhhhhhhh
Confidence            99999999999999997654321        1456677888877 568999999999999998876553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=5.1e-08  Score=80.49  Aligned_cols=127  Identities=13%  Similarity=-0.025  Sum_probs=107.1

Q ss_pred             hhCCCchHHHHHHHHHHhcChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH-cCCHH
Q 027087           73 ATYDPLTQAEKDASAAVSSRVSDA-LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE-VGDRE  150 (228)
Q Consensus        73 ~~~~~~~~a~~~~~~al~~~p~~a-~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~-~g~~~  150 (228)
                      ...+..+.+...+.++++.+|.+. ..|...+....+.|+++.|+..|+++++..|....   .+...+..... .|+.+
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---~~~~~a~~e~~~~~~~~  186 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---VYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---HHHHHHHHHHHTSCCHH
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHhccCHH
Confidence            345666777778888888888764 47888899999999999999999999999999988   78888877544 68999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087          151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD  203 (228)
Q Consensus       151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~  203 (228)
                      .|...|++++...|.+++.+..++..+.. .|+++.|+..|+++++..|..++
T Consensus       187 ~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         187 VAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChH
Confidence            99999999999999999999988887777 46899999999999998776543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=6.2e-08  Score=79.97  Aligned_cols=124  Identities=8%  Similarity=-0.060  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHh-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087           79 TQAEKDASAAVS-SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME  157 (228)
Q Consensus        79 ~~a~~~~~~al~-~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~  157 (228)
                      +.+...+.++++ ..|.+...|+..+.....+|++++|+..|+++++..|.+..  ..|..++....+.|++++|++.|+
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~--~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHcCChHHHHHHHH
Confidence            455566777775 47888999999999999999999999999999999997754  268899999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087          158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL  204 (228)
Q Consensus       158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~  204 (228)
                      +++...|.++..+...+...+...|+.+.|...|++++..+|++...
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~  205 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  205 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHH
Confidence            99777777778888888766665678999999999999999998764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=1.1e-07  Score=73.25  Aligned_cols=70  Identities=11%  Similarity=0.010  Sum_probs=63.5

Q ss_pred             hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087           90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS  162 (228)
Q Consensus        90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  162 (228)
                      .+.+....++.+++.++...|++++|+..++++++++|.+..   +|.+++.+|..+|++++|+..|+++...
T Consensus        61 ~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~---~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP---LWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            334555678899999999999999999999999999999999   9999999999999999999999998443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.61  E-value=7.6e-08  Score=78.73  Aligned_cols=84  Identities=15%  Similarity=0.037  Sum_probs=72.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 027087          104 RELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA  183 (228)
Q Consensus       104 ~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~  183 (228)
                      .-..+.|++++|++.|+++++.+|++..   ++.++|.+|...|++++|++.|++++...|.+...+..++.++...+ .
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~---ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~-~   79 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDAS---LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ-A   79 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc-c
Confidence            3456789999999999999999999999   99999999999999999999999999988988888888888776644 4


Q ss_pred             HHHHHHHH
Q 027087          184 LLLAENQF  191 (228)
Q Consensus       184 ~~~A~~~~  191 (228)
                      .+++...+
T Consensus        80 ~~~a~~~~   87 (264)
T d1zbpa1          80 RKDFAQGA   87 (264)
T ss_dssp             HHHHTTSC
T ss_pred             cHHHHHHh
Confidence            45554433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.50  E-value=1.6e-06  Score=69.16  Aligned_cols=101  Identities=17%  Similarity=0.118  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087           95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~p~~~  170 (228)
                      |+++++++|..+.+.||+++|++.|+++.+.  ++..   +++++|.+|..    ..++..|...++.+.  ...++.+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~---A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~--~~~~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENS---GCFNLGVLYYQGQGVEKNLKKAASFYAKAC--DLNYSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTTCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHH---HHHHHHHHHHcCCCcchhHHHHHHhhcccc--cccccchh
Confidence            5789999999999999999999999999764  6788   99999999998    779999999999983  33578888


Q ss_pred             HHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCC
Q 027087          171 AALAAALYVD---KHALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       171 ~~la~~l~~~---~~~~~~A~~~~~~al~l~P~~~  202 (228)
                      ..++.++...   ....+.|...|+++.+..+...
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a  108 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG  108 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhhhH
Confidence            8888876542   2578999999999998766544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=2.4e-06  Score=61.56  Aligned_cols=76  Identities=11%  Similarity=0.003  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087           95 DALELLEKGRELQAIG---DFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH  170 (228)
Q Consensus        95 ~a~a~~~lG~~~~~~g---~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~  170 (228)
                      .....|+.|.++.+..   +.++||..++.+++.+|.+. +   .++++|..|+++|+|++|+++++++|...|.+..+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd---~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRE---CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            3677888888888654   44689999999998888764 6   789999999999999999999999988888887665


Q ss_pred             HHH
Q 027087          171 AAL  173 (228)
Q Consensus       171 ~~l  173 (228)
                      ...
T Consensus       111 ~L~  113 (124)
T d2pqrb1         111 ALK  113 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=2.9e-06  Score=61.15  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087          135 ARVGRALALYEVGD---REEAIAEMEDVSISLKGYP-EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD  209 (228)
Q Consensus       135 a~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~p-~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~  209 (228)
                      +.|++|+++....+   .++++..+++++...|.+. +.++++|.+++.+ |+|++|+.+++++|+++|++..+.-.+.
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl-gdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            89999999998754   4699999999987777665 8999999999995 5999999999999999999998765443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=1.6e-05  Score=57.31  Aligned_cols=110  Identities=14%  Similarity=-0.036  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHHH
Q 027087           79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAIA  154 (228)
Q Consensus        79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~~  154 (228)
                      +.++..+.++.+.  +++.+.+++|.  ....++++|+..|+++.+  .+++.   +.+++|.+|..    ..++++|++
T Consensus        10 ~~A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~--~g~~~---a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_          10 KKAIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACE--LNSGN---GCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHH--TTCHH---HHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhc--ccchh---hhhhHHHhhhhccccchhhHHHHH
Confidence            4566666766665  35566777764  456899999999999876  46788   99999999987    577999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 027087          155 EMEDVSISLKGYPEVHAALAAALYVD---KHALLLAENQFTIATLLDP  199 (228)
Q Consensus       155 ~~~~al~~~~~~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l~P  199 (228)
                      .|+++.  ...++++.+.||.++..-   ..++++|..+|+++.++..
T Consensus        81 ~~~~aa--~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          81 YYSKAC--GLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhhh--ccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            999993  236799999999987761   2578999999999988654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.95  E-value=8.2e-05  Score=58.73  Aligned_cols=103  Identities=16%  Similarity=0.025  Sum_probs=85.2

Q ss_pred             ChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Q 027087           92 RVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAIAEMEDVSISL  163 (228)
Q Consensus        92 ~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~  163 (228)
                      +..+...++++|..+..    ..+...+...++++.+  ++++.   +.+++|.++..    ..++++|+..|+++... 
T Consensus       138 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~---A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-  211 (265)
T d1ouva_         138 DLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSP---GCFNAGNMYHHGEGATKNFKEALARYSKACEL-  211 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHH---HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-
T ss_pred             cccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccc---cccchhhhcccCcccccchhhhhhhHhhhhcc-
Confidence            45667788999999986    6788888888888764  66788   99999999988    67999999999999443 


Q ss_pred             CCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCC
Q 027087          164 KGYPEVHAALAAALYVDK----HALLLAENQFTIATLLDPHYT  202 (228)
Q Consensus       164 ~~~p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P~~~  202 (228)
                       .++.+.++||.++.. |    +++++|.++|+++.+.....+
T Consensus       212 -g~~~a~~~LG~~y~~-G~g~~~n~~~A~~~~~kAa~~g~~~A  252 (265)
T d1ouva_         212 -ENGGGCFNLGAMQYN-GEGVTRNEKQAIENFKKGCKLGAKGA  252 (265)
T ss_dssp             -TCHHHHHHHHHHHHT-TSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             -cCHHHHHHHHHHHHc-CCCCccCHHHHHHHHHHHHHCcCHHH
Confidence             578999999998875 3    378999999999999876544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.36  E-value=0.0014  Score=46.57  Aligned_cols=75  Identities=16%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             chHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCH
Q 027087           78 LTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDR  149 (228)
Q Consensus        78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~  149 (228)
                      .+.+...+.++.+.  +++.+.+++|.+|..    ..|+++|+..|+++.+.  +++.   +.+++|.+|..    ..++
T Consensus        39 ~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~---a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          39 KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQD---GCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--Ccch---HHHHHHHHHHcCCccCCCH
Confidence            45666666766654  678889999999986    67899999999999764  6677   99999999987    5789


Q ss_pred             HHHHHHHHHH
Q 027087          150 EEAIAEMEDV  159 (228)
Q Consensus       150 ~~A~~~~~~a  159 (228)
                      ++|+.+|+++
T Consensus       112 ~~A~~~~~~A  121 (133)
T d1klxa_         112 KQAVKTFEKA  121 (133)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999998

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=2.7  Score=34.58  Aligned_cols=25  Identities=28%  Similarity=0.190  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087          135 ARVGRALALYEVGDREEAIAEMEDV  159 (228)
Q Consensus       135 a~~~la~~~~~~g~~~~A~~~~~~a  159 (228)
                      +.|-+|.++..+|+.++|...|+.+
T Consensus       321 ~~YW~gRa~~~~G~~~~A~~~~~~~  345 (450)
T d1qsaa1         321 WRYWQADLLLERGREAEAKEILHQL  345 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChhhHHHHHHHH
Confidence            3444555555555555555555544

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.26  E-value=0.98  Score=28.74  Aligned_cols=27  Identities=15%  Similarity=0.257  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087           97 LELLEKGRELQAIGDFNKALQYFTLVV  123 (228)
Q Consensus        97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al  123 (228)
                      ..+-.++.-+.+.|+||+||+++++|.
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334456777778888888888877764