Citrus Sinensis ID: 027089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHccccccccHHHcccccEEcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MGKDTISTAQMRAVVDEIIKAGRRlanrgrcplmyewhgkkywgaahGLAGIMHVLMDmelkpdeveDVKGTLRYMIknrfpsgnypssegsesdrlvhwchgapgVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRvgichgisgnTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEgkmhggdrpyslfegiggmTHLFldmiepsearfpayel
Flexible Loop (DISEMBL)
mgkdtistaqmRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKnrfpsgnypsSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
Low Complexity Region (SEG)
MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
Disordered region (IsUnstruct)
***********RAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKN****************RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMI************
Disordered Region (DISOPRED)
***DTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
Disordered Region (DISEMBL)
********AQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSG***********RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
Disordered Region (DISPRO)
**KDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9JJK2	450	LanC-like protein 2 OS=Mu	yes	no	0.964	0.488	0.485	8e-58
Q9NS86	450	LanC-like protein 2 OS=Ho	yes	no	0.964	0.488	0.472	2e-56
O43813	399	LanC-like protein 1 OS=Ho	no	no	0.969	0.553	0.424	8e-49
O89112	399	LanC-like protein 1 OS=Mu	no	no	0.978	0.558	0.406	5e-48
Q90ZL2	405	LanC-like protein 1 OS=Da	no	no	0.947	0.533	0.410	1e-47
Q9QX69	399	LanC-like protein 1 OS=Ra	no	no	0.978	0.558	0.411	1e-47
Q9Y0Y7	419	LanC-like protein 3 homol	yes	no	0.964	0.525	0.380	6e-44
Q6ZV70	420	LanC-like protein 3 OS=Ho	no	no	0.960	0.521	0.370	1e-42
Q8CD19	420	LanC-like protein 3 OS=Mu	no	no	0.960	0.521	0.366	1e-42
Q29HZ1	420	LanC-like protein 3 homol	no	no	0.942	0.511	0.367	1e-40

>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1

 Score =  223 bits (568), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 19/239 (7%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
           +G  T+    ++ VV  II++G+ L+   R    CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct: 214 IGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYML 273

Query: 57  MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
           M  E K D+    E VK ++ Y+   +F SGNYPSS  +E+DRLVHWCHGAPGV   L +
Sbjct: 274 MQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQ 333

Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A +VF E+++L+ A++  +V+W+RGLL++  GICHG SGN Y FLSLYRLT + +YLYRA
Sbjct: 334 AYQVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRA 393

Query: 173 KAFACFLYDRAQKLIAEGKMHG---GDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             FA +  D           HG    DRPYSLFEG+ G  H   D++ P  ARFPA+EL
Sbjct: 394 CKFAEWCLDYG--------AHGCRIPDRPYSLFEGMAGAVHFLSDILVPETARFPAFEL 444

Necessary for abscisic acid (ABA) binding on the cell membrane and activation of the ABA signaling pathway in granulocytes.
Mus musculus (taxid: 10090)

>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1

 Score =  218 bits (556), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 19/239 (7%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
           +G  T+  + ++ VV+ II++G+ L+   R    CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct: 214 IGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLLYQWHRKQYVGAAHGMAGIYYML 273

Query: 57  MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
           M    K D+    E VK ++ Y+   +F SGNYPSS  +E+DRLVHWCHGAPGV   L +
Sbjct: 274 MQPAAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQ 333

Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A +VF E+++L+ A++  +V+W+RGLL++  GICHG +GN Y FLSLYRLT + +YLYRA
Sbjct: 334 AYKVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 393

Query: 173 KAFACFLYDRAQKLIAEGKMHGG---DRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             FA +  D           HG    DRPYSLFEG+ G  H   D++ P  +RFPA+EL
Sbjct: 394 CKFAEWCLDYG--------AHGCRIPDRPYSLFEGMAGAIHFLSDVLGPETSRFPAFEL 444

Necessary for abscisic acid (ABA) binding on the cell membrane and activation of the ABA signaling pathway in granulocytes.

Homo sapiens (taxid: 9606)

>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1

 Score =  193 bits (491), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
            G + I  + ++ + + I+ +G  LA +     + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 169 FGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL 228

Query: 57  MDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
           M   L+  + +    VK ++ Y+ + +FPSGNYP   G   D LVHWCHGAPGV   L +
Sbjct: 229 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ 288

Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A +VF E+++L  A    +V+W+ GLLK+  G+CHG +GN Y FL+LY LT +++YLYRA
Sbjct: 289 AYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRA 348

Query: 173 KAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             FA  C  Y        E      D P+SLFEG+ G  +   D++ P++ARFPA+EL
Sbjct: 349 CKFAEWCLEY-------GEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 399

May play a role in EPS8 signaling. Binds glutathion.

Homo sapiens (taxid: 9606)

>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1

 Score =  191 bits (484), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 145/236 (61%), Gaps = 13/236 (5%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
            G++ I  + ++ + + I+ +G  L+ +     + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 169 FGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAAHGLAGIYYYL 228

Query: 57  MDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
           M   L+ ++ +    VK ++ ++ + +FPSGNYP       D LVHWCHGAPGV   L +
Sbjct: 229 MQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQ 288

Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A +VF E+ +L  A    +V+W+ GLLK+  G+CHG +GN Y FL+LY LT +++YLYRA
Sbjct: 289 AYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRA 348

Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             FA +  D       E      D P+SLFEG+ G  +   D++ P++A+FPA+EL
Sbjct: 349 CKFAEWCLD-----YGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 399

May play a role in EPS8 signaling. Binds glutathion.

Mus musculus (taxid: 10090)

>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 149/239 (62%), Gaps = 23/239 (9%)

Query: 3   KDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
           ++ I    ++ + D I+++G+ L+ R +     PLMYEW+ ++Y GAAHGL+GI + LM 
Sbjct: 177 QEKIPFQYIQQICDAILESGQILSQRNKIQDQSPLMYEWYQEEYVGAAHGLSGIYYYLMQ 236

Query: 59  MELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAA 115
             L   +      VK ++ Y+ + +FPSGNY    G   D LVHWCHG+PGV   L +A 
Sbjct: 237 PGLVAGQDRVFSLVKPSVNYVCQLKFPSGNYAPCVGDARDLLVHWCHGSPGVIYMLIQAF 296

Query: 116 EVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRAKA 174
           +VFG +++L+ A+  GEV+W+RGLLK+  G+CHG +GN Y FL+LY++T + ++LYRA  
Sbjct: 297 KVFGVRQYLEDALQCGEVIWQRGLLKKGYGLCHGAAGNAYGFLALYKITQDPKHLYRACM 356

Query: 175 FA--CFLYDRAQKLIAEGKMHGG---DRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           FA  C  Y R          HG    D P+SLFEG+ G  +   D+++P+ A+FP +E+
Sbjct: 357 FADWCMNYGR----------HGCRTPDTPFSLFEGMAGTIYFLADLLQPARAKFPCFEV 405

Binds glutathion.

Danio rerio (taxid: 7955)

>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2

 Score =  189 bits (480), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 144/236 (61%), Gaps = 13/236 (5%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
            G++ I  + ++ + + I+ +G +L+ +     + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 169 FGEEKIPQSHIQQICETILTSGEKLSRKRNFTTKSPLMYEWYQEYYVGAAHGLAGIYYYL 228

Query: 57  MDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
           M   L   + +    VK ++ ++ + +FPSGNYPS      D LVHWCHGAPGV   L +
Sbjct: 229 MQPSLHVSQGKLHSLVKPSVDFVCQLKFPSGNYPSCLDDTRDLLVHWCHGAPGVIYMLIQ 288

Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A +VF E+ +L  A    +V+W+ GLLK+  G+CHG +GN Y FL+LY LT + +YLYRA
Sbjct: 289 AYKVFKEEHYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQDAKYLYRA 348

Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             FA +  D       E      D P+SLFEG+ G  +   D++ P++A+FPA+EL
Sbjct: 349 CKFAEWCLD-----YGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 399

May play a role in EPS8 signaling. Binds glutathion.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061 PE=1 SV=1

 Score =  177 bits (449), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 139/239 (58%), Gaps = 19/239 (7%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLA--NRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
           + +  I+   + ++   I+ +GR  +  N   CPLMY++HG +Y GAAHGL  I+H+L+D
Sbjct: 179 LPEKKITDDDLVSICQLIVTSGREYSKQNNSPCPLMYQYHGTEYLGAAHGLCAILHMLLD 238

Query: 59  --------MELKPDEVEDVKGTLRYMIKNRFPSGNYPSS----EGSESDRLVHWCHGAPG 106
                   +     E+ D+K ++ + ++ +   GN+P +          RLVHWCHGAPG
Sbjct: 239 SPWFRTLPISAPAAELRDIKRSIDFFLELQDSDGNFPVALEDLRSGRDKRLVHWCHGAPG 298

Query: 107 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGN 165
               LAKA  +F E+++L +     ++VWK+G L++  GICHG++GN YVFL L+RLT  
Sbjct: 299 AVYVLAKAYLIFKEEKYLASLRRCADMVWKKGFLRKGPGICHGVAGNGYVFLLLFRLTNE 358

Query: 166 VEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFP 224
           + YLYRA  F   L +   KL A       DRP+SL+EG+ G     +D++EP +A FP
Sbjct: 359 MRYLYRAHKFMELLTNAEFKLRARTP----DRPHSLYEGVAGTVCYLVDLLEPEQAYFP 413

Drosophila melanogaster (taxid: 7227)

>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 146/240 (60%), Gaps = 21/240 (8%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
           + ++ ++ AQ++++   I+ +G++ A + R   PLMY ++G +Y GAAHGL+ I+ +L+ 
Sbjct: 188 LAQEVLTPAQIKSICQAILDSGKQYAIKKRKPFPLMYSYYGTEYLGAAHGLSSILQMLLS 247

Query: 59  ME--LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDR---LVHWCHGAPGVTLTLAK 113
               LKP + E V  ++ ++++    + N+P   G   +R   LVHWCHGAPG+    AK
Sbjct: 248 YHEHLKPSDRELVWQSVDFLMEQE-QNCNWPPELGETIERENELVHWCHGAPGIAYLFAK 306

Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A  V  + ++L   +  GE+ W++GLLK+  GICHG++G+ YVFL LYRLTGN +Y+YRA
Sbjct: 307 AYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366

Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRP----YSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           + FA FL+          +   G R     YSL+EG  G     +D+++P++A FP + +
Sbjct: 367 QRFAQFLFTE--------EFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFSV 418

Homo sapiens (taxid: 9606)

>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 146/240 (60%), Gaps = 21/240 (8%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
           + ++ ++  Q++A+   I+ +G++ A + R   PLMY ++G +Y GAAHGL+ I+ +L+ 
Sbjct: 188 LAQEVLTPTQIKAICQAILDSGKQYALKKRKPFPLMYSYYGTEYLGAAHGLSSILQMLLS 247

Query: 59  ME--LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDR---LVHWCHGAPGVTLTLAK 113
            +  LKP + E V  ++ ++++    + N+P   G   +R   LVHWCHGAPG+    AK
Sbjct: 248 YQEHLKPSDRELVWQSVDFLMEQE-QNCNWPPELGETIERENELVHWCHGAPGIAYLFAK 306

Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A  +  + ++L   +  GE+ W++GLLK+  GICHG++G+ YVFL LYRLTGN +Y+YRA
Sbjct: 307 AYLISKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366

Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRP----YSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           + FA FL+          +   G R     YSL+EG  G     +D+++P++A FP + +
Sbjct: 367 QRFAQFLFTE--------EFKSGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFSV 418

Mus musculus (taxid: 10090)

>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15215 PE=3 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 135/234 (57%), Gaps = 19/234 (8%)

Query: 6   ISTAQMRAVVDEIIKAGRRLA--NRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMD----- 58
           I+   + ++   I+ +GR  +  N    PLM+++HG +Y GAAHGL  I+H+L+D     
Sbjct: 185 ITDDDLISICQLIVTSGREYSKMNNSPLPLMFQYHGTEYLGAAHGLCAILHMLLDSPWFR 244

Query: 59  ---MELKPDEVEDVKGTLRYMIKNRFPSGNYPSS----EGSESDRLVHWCHGAPGVTLTL 111
              +     E+ ++K ++ Y +  +   GN+P +          RLVHWCHGAPG    L
Sbjct: 245 TVPISAPAAELREIKRSIDYFLVLQDAEGNFPVALEDLRSGRDKRLVHWCHGAPGAVYML 304

Query: 112 AKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLY 170
           AKA  +F E+++L +   + ++VWK+G L++  GICHG++GN YVFL L+RLT  ++YLY
Sbjct: 305 AKAYLIFKEEKYLTSLRRSADLVWKKGFLRKGPGICHGVAGNGYVFLLLFRLTNEMKYLY 364

Query: 171 RAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFP 224
           RA  F   L +   K     +    D P+SL+EG+ G     +D++EP +A FP
Sbjct: 365 RAHKFMELLTNSEFK----QRARIPDNPHSLYEGVAGTVCFLVDILEPEQAYFP 414

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
225461385	407	PREDICTED: lanC-like protein 2 [Vitis vi	1.0	0.560	0.903	1e-120
224128201	417	predicted protein [Populus trichocarpa]	0.995	0.544	0.855	1e-114
356544018	405	PREDICTED: lanC-like protein 2-like [Gly	1.0	0.562	0.833	1e-112
146233385	443	abscisic acid ABA receptor [Populus tric	0.995	0.512	0.855	1e-112
449446947	412	PREDICTED: lanC-like protein 2-like [Cuc	1.0	0.553	0.820	1e-111
255587364	419	catalytic, putative [Ricinus communis] g	1.0	0.544	0.824	1e-110
449530271	293	PREDICTED: lanC-like protein 2-like, par	1.0	0.778	0.820	1e-110
297853060	410	predicted protein [Arabidopsis lyrata su	1.0	0.556	0.776	1e-105
225446932	412	PREDICTED: lanC-like protein 2 [Vitis vi	1.0	0.553	0.790	1e-103
147768321	412	hypothetical protein VITISV_008093 [Viti	1.0	0.553	0.786	1e-102

>gi|225461385|ref|XP_002284781.1| PREDICTED: lanC-like protein 2 [Vitis vinifera] gi|302143043|emb|CBI20338.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/228 (90%), Positives = 217/228 (95%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +GKDTIS+A+MRA V EIIK+GR +A R RCPLMYEWHGKKYWGAAHGLAG+MHVLM ME
Sbjct: 180 IGKDTISSARMRASVKEIIKSGREMAKRERCPLMYEWHGKKYWGAAHGLAGVMHVLMHME 239

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
           LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGV LTL KAAEVFG+
Sbjct: 240 LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLLKAAEVFGD 299

Query: 121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
           KEFLQAAVDAGEVVW RGLLKRVGICHGISGNTYVFLSLYRLTGNVE+LYRAKAFACFL 
Sbjct: 300 KEFLQAAVDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGNVEFLYRAKAFACFLL 359

Query: 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           DRAQ+LI+EGKMHGGDRPYSLFEGIGGMT+LFLDMIEPSEARFP YEL
Sbjct: 360 DRAQRLISEGKMHGGDRPYSLFEGIGGMTYLFLDMIEPSEARFPGYEL 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128201|ref|XP_002329106.1| predicted protein [Populus trichocarpa] gi|222869775|gb|EEF06906.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/228 (85%), Positives = 216/228 (94%), Gaps = 1/228 (0%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +GK+TIST++ RAVVDEIIKAGR LA +G+CPL+YEWHGK+YWGAAHGLAGIM VLMD+E
Sbjct: 191 IGKETISTSRKRAVVDEIIKAGR-LARKGKCPLLYEWHGKRYWGAAHGLAGIMLVLMDLE 249

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
           L PDEVEDVKGTL YMIKN FPSGNYPSSEG++SD LVHWCHGAPG+ LTLAKAAEVFG+
Sbjct: 250 LTPDEVEDVKGTLHYMIKNHFPSGNYPSSEGNKSDCLVHWCHGAPGIALTLAKAAEVFGD 309

Query: 121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
           KEFLQAA++AGEVVW RGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL+
Sbjct: 310 KEFLQAAMEAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLH 369

Query: 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           DRAQKL++EGKMHGGDRPYSLFEG GGM +LFLD++EPSEARFPAYEL
Sbjct: 370 DRAQKLVSEGKMHGGDRPYSLFEGFGGMAYLFLDILEPSEARFPAYEL 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544018|ref|XP_003540453.1| PREDICTED: lanC-like protein 2-like [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/228 (83%), Positives = 206/228 (90%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +G +TI T  MR++VDE+I AGR L  +GRCPLMYEWHGKKYWGAAHGLAGIMH LMDME
Sbjct: 178 IGNNTIPTTHMRSIVDEVIMAGRHLGRKGRCPLMYEWHGKKYWGAAHGLAGIMHALMDME 237

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
           LKPDEVEDVKGTLRYMI NR PSGNYPSSEGSE+DRLVHWCHGAPG+TLTL KAAEVFG+
Sbjct: 238 LKPDEVEDVKGTLRYMINNRLPSGNYPSSEGSENDRLVHWCHGAPGLTLTLVKAAEVFGD 297

Query: 121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
           KEF QAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYR+TGN EYLYRAKAFACFL 
Sbjct: 298 KEFSQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRMTGNEEYLYRAKAFACFLL 357

Query: 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           DRAQ LI+EGKMHGGDRPYSLFEG+GGM +  LDM++P  A+FP YEL
Sbjct: 358 DRAQNLISEGKMHGGDRPYSLFEGLGGMAYTCLDMVDPQMAKFPGYEL 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146233385|gb|ABQ14360.1| abscisic acid ABA receptor [Populus trichocarpa]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/228 (85%), Positives = 216/228 (94%), Gaps = 1/228 (0%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +GK+TIST++ RAVVDEIIKAGR LA +G+CPL+YEWHGK+YWGAAHGLAGIM VLMD+E
Sbjct: 217 IGKETISTSRKRAVVDEIIKAGR-LARKGKCPLLYEWHGKRYWGAAHGLAGIMLVLMDLE 275

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
           L PDEVEDVKGTL YMIKN FPSGNYPSSEG++SD LVHWCHGAPG+ LTLAKAAEVFG+
Sbjct: 276 LTPDEVEDVKGTLHYMIKNHFPSGNYPSSEGNKSDCLVHWCHGAPGIALTLAKAAEVFGD 335

Query: 121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
           KEFLQAA++AGEVVW RGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL+
Sbjct: 336 KEFLQAAMEAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLH 395

Query: 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           DRAQKL++EGKMHGGDRPYSLFEG GGM +LFLD++EPSEARFPAYEL
Sbjct: 396 DRAQKLVSEGKMHGGDRPYSLFEGFGGMAYLFLDILEPSEARFPAYEL 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446947|ref|XP_004141231.1| PREDICTED: lanC-like protein 2-like [Cucumis sativus]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/228 (82%), Positives = 208/228 (91%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +G++TIS   MR+VVDE+I+AGR L  + + PLMYEWHGKKYWGAAHGLAGIMHVLMDME
Sbjct: 185 IGQNTISNNFMRSVVDEVIEAGRTLGEKSKSPLMYEWHGKKYWGAAHGLAGIMHVLMDME 244

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
           LKPDEVEDVK TLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGV LTL KAAEVFG+
Sbjct: 245 LKPDEVEDVKNTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLGKAAEVFGD 304

Query: 121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
            EFLQAA+DAGEVVW RGLLKRVGICHGISGNTYVFLSLYRLTG++ YL+RAKAFACFL+
Sbjct: 305 DEFLQAAIDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGDLMYLHRAKAFACFLH 364

Query: 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             A+KLI+EGKMH GDRPYSLFEGIGGM +LF DM+EP+ A+FP+YEL
Sbjct: 365 QNAEKLISEGKMHSGDRPYSLFEGIGGMAYLFFDMVEPNAAKFPSYEL 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587364|ref|XP_002534246.1| catalytic, putative [Ricinus communis] gi|223525647|gb|EEF28136.1| catalytic, putative [Ricinus communis]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/228 (82%), Positives = 209/228 (91%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           + K+ IS  + RAVV+EI KAGR+LA+R R PLMYEWHGKKYWGAAHGLAGIMHVLM+ME
Sbjct: 192 IDKEIISAGRQRAVVNEINKAGRKLAHRERYPLMYEWHGKKYWGAAHGLAGIMHVLMNME 251

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
           L+PDE EDVK TLRYMI NRF SGNYPSSEG+ESDRLVHWCHGAPGV LTL KAAEVFG+
Sbjct: 252 LRPDETEDVKRTLRYMINNRFRSGNYPSSEGNESDRLVHWCHGAPGVALTLVKAAEVFGD 311

Query: 121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
           +EFLQAA++A EVVW  GLLKRVG+CHGISGNTYVFLSLY+LTGN+EYLYRAKAFACF++
Sbjct: 312 QEFLQAAMEAAEVVWNWGLLKRVGLCHGISGNTYVFLSLYQLTGNMEYLYRAKAFACFIH 371

Query: 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           DRAQKLI+EGKMHGGDRPYSLFEG+GGM +LF DMIEPSEARFPAYEL
Sbjct: 372 DRAQKLISEGKMHGGDRPYSLFEGVGGMAYLFFDMIEPSEARFPAYEL 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530271|ref|XP_004172119.1| PREDICTED: lanC-like protein 2-like, partial [Cucumis sativus]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/228 (82%), Positives = 208/228 (91%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +G++TIS   MR+VVDE+I+AGR L  + + PLMYEWHGKKYWGAAHGLAGIMHVLMDME
Sbjct: 66  IGQNTISNNFMRSVVDEVIEAGRTLGEKSKSPLMYEWHGKKYWGAAHGLAGIMHVLMDME 125

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
           LKPDEVEDVK TLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGV LTL KAAEVFG+
Sbjct: 126 LKPDEVEDVKNTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLGKAAEVFGD 185

Query: 121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
            EFLQAA+DAGEVVW RGLLKRVGICHGISGNTYVFLSLYRLTG++ YL+RAKAFACFL+
Sbjct: 186 DEFLQAAIDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGDLMYLHRAKAFACFLH 245

Query: 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             A+KLI+EGKMH GDRPYSLFEGIGGM +LF DM+EP+ A+FP+YEL
Sbjct: 246 QNAEKLISEGKMHSGDRPYSLFEGIGGMAYLFFDMVEPNAAKFPSYEL 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853060|ref|XP_002894411.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297340253|gb|EFH70670.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/228 (77%), Positives = 207/228 (90%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +GKD++S+ +MR+VV+EI +AGR+L NRG CPLMYEWHGK+YWGAAHGLAGIM+VLM ME
Sbjct: 183 IGKDSVSSERMRSVVEEIFRAGRQLGNRGTCPLMYEWHGKRYWGAAHGLAGIMNVLMHME 242

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
           L+ DE++DVKGTL YMI+NRFPSGNY SSEGSESDRLVHWCHGAPGV LTL KAA+VF  
Sbjct: 243 LEQDEIKDVKGTLSYMIQNRFPSGNYLSSEGSESDRLVHWCHGAPGVALTLVKAAQVFKT 302

Query: 121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
           KEF++AA++AGEVVW RGLLKRVGICHGISGNTYVFLSLYRLTG  EYLYRAKAFA FL 
Sbjct: 303 KEFVEAAMEAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGKAEYLYRAKAFASFLL 362

Query: 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
           D+++KLI+EGKMHGGDRP+SLFEGIGGM ++FLDM +P++A FP YEL
Sbjct: 363 DKSEKLISEGKMHGGDRPFSLFEGIGGMAYMFLDMNDPTQALFPGYEL 410

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446932|ref|XP_002263345.1| PREDICTED: lanC-like protein 2 [Vitis vinifera] gi|297739117|emb|CBI28768.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/229 (79%), Positives = 200/229 (87%), Gaps = 1/229 (0%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +G+ T+      AVV EIIK GRRLAN+GRCPLM+EW+G+KY GAAHGLAGIMHVLM ME
Sbjct: 184 IGQGTVPPTYTGAVVSEIIKNGRRLANKGRCPLMFEWYGEKYLGAAHGLAGIMHVLMHME 243

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSES-DRLVHWCHGAPGVTLTLAKAAEVFG 119
           LK DE+EDVKGTLRYMIKNRFP GNYP+SE   + D LVHWCHGAPGV LTLAKAAEVFG
Sbjct: 244 LKIDEIEDVKGTLRYMIKNRFPRGNYPASEEDRNGDVLVHWCHGAPGVALTLAKAAEVFG 303

Query: 120 EKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL 179
           + EFL+AA+DA EVVW RGLLKRVG+CHGISGN YVFLSLYRLTG +E+LYRAKAFACFL
Sbjct: 304 DDEFLEAAIDAAEVVWNRGLLKRVGVCHGISGNAYVFLSLYRLTGKMEFLYRAKAFACFL 363

Query: 180 YDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
            DRA KLI++G+MHGGD PYSLFEG GGM HLFLDMIEPSEARFPAYEL
Sbjct: 364 LDRAHKLISDGEMHGGDSPYSLFEGSGGMAHLFLDMIEPSEARFPAYEL 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768321|emb|CAN64758.1| hypothetical protein VITISV_008093 [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/229 (78%), Positives = 199/229 (86%), Gaps = 1/229 (0%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
           +G+ T+       VV EIIK GRRLAN+GRCPLM+EW+G+KY GAAHGLAGIMHVLM ME
Sbjct: 184 IGQGTVPPTYTGXVVSEIIKNGRRLANKGRCPLMFEWYGEKYLGAAHGLAGIMHVLMHME 243

Query: 61  LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSES-DRLVHWCHGAPGVTLTLAKAAEVFG 119
           LK DE+EDVKGTLRYMIKNRFP GNYP+SE   + D LVHWCHGAPGV LTLAKAAEVFG
Sbjct: 244 LKIDEIEDVKGTLRYMIKNRFPRGNYPASEEDRNGDVLVHWCHGAPGVALTLAKAAEVFG 303

Query: 120 EKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL 179
           + EFL+AA+DA EVVW RGLLKRVG+CHGISGN YVFLSLYRLTG +E+LYRAKAFACFL
Sbjct: 304 DDEFLEAAIDAAEVVWNRGLLKRVGVCHGISGNAYVFLSLYRLTGKMEFLYRAKAFACFL 363

Query: 180 YDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
            DRA KLI++G+MHGGD PYSLFEG GGM HLFLDMIEPSEARFPAYEL
Sbjct: 364 LDRAHKLISDGEMHGGDSPYSLFEGSGGMAHLFLDMIEPSEARFPAYEL 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2011466	410	GPCR "G protein coupled recept	1.0	0.556	0.745	1.2e-95
TAIR|locus:2051449	405	GCL2 "GCR2-like 2" [Arabidopsi	1.0	0.562	0.729	7e-93
TAIR|locus:2171800	433	GCL1 "GCR2-like 1" [Arabidopsi	0.995	0.524	0.493	2.5e-58
RGD|1310809	450	Lancl2 "LanC lantibiotic synth	0.978	0.495	0.491	4.8e-55
MGI|MGI:1919085	450	Lancl2 "LanC (bacterial lantib	0.978	0.495	0.491	7.8e-55
UNIPROTKB|I3LIW1	412	LANCL2 "Uncharacterized protei	0.969	0.536	0.5	2.1e-54
UNIPROTKB|Q9NS86	450	LANCL2 "LanC-like protein 2" [	0.978	0.495	0.478	2.4e-53
UNIPROTKB|A6QPG6	433	LANCL2 "Uncharacterized protei	0.969	0.510	0.478	4.9e-53
UNIPROTKB|F1PEY8	366	LANCL2 "Uncharacterized protei	0.969	0.603	0.478	1.7e-52
UNIPROTKB|E1C3R4	455	LANCL2 "Uncharacterized protei	0.969	0.485	0.462	1.3e-50

TAIR|locus:2011466 GPCR "G protein coupled receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 170/228 (74%), Positives = 206/228 (90%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
             +G+++IS+ +MR+VV+EI +AGR+L N+G CPLMYEWHGK+YWGAAHGLAGIM+VLM  E
Sbjct:   183 IGQESISSERMRSVVEEIFRAGRQLGNKGTCPLMYEWHGKRYWGAAHGLAGIMNVLMHTE 242

Query:    61 LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE 120
             L+PDE++DVKGTL YMI+NRFPSGNY SSEGS+SDRLVHWCHGAPGV LTL KAA+V+  
Sbjct:   243 LEPDEIKDVKGTLSYMIQNRFPSGNYLSSEGSKSDRLVHWCHGAPGVALTLVKAAQVYNT 302

Query:   121 KEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180
             KEF++AA++AGEVVW RGLLKRVGICHGISGNTYVFLSLYRLT N +YLYRAKAFA FL 
Sbjct:   303 KEFVEAAMEAGEVVWSRGLLKRVGICHGISGNTYVFLSLYRLTRNPKYLYRAKAFASFLL 362

Query:   181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             D+++KLI+EG+MHGGDRP+SLFEGIGGM ++ LDM +P++A FP YEL
Sbjct:   363 DKSEKLISEGQMHGGDRPFSLFEGIGGMAYMLLDMNDPTQALFPGYEL 410

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0009787 "regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010231 "maintenance of seed dormancy" evidence=IMP

GO:0010427 "abscisic acid binding" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=ISS

TAIR|locus:2051449 GCL2 "GCR2-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 167/229 (72%), Positives = 195/229 (85%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 60
             +GK+T+S+  +R V  EIIK GR +A +G  PLM+EW+GK+YWGAAHGLAGIMHVLMD++
Sbjct:   177 IGKETLSSDTIREVAQEIIKEGRSMAKKGSSPLMFEWYGKRYWGAAHGLAGIMHVLMDVQ 236

Query:    61 LKPDEVEDVKGTLRYMIKNRFPSGNYPSSE-GSESDRLVHWCHGAPGVTLTLAKAAEVFG 119
             LKPDE EDVKGTL+YMIKNRFPSGNYP+SE   + D LVHWCHGAPG+ LTL KAAEVFG
Sbjct:   237 LKPDEAEDVKGTLKYMIKNRFPSGNYPASEEDKKKDILVHWCHGAPGIALTLGKAAEVFG 296

Query:   120 EKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL 179
             E+EFL+A+  A EVVW RGLLKRVGICHGISGN YVFL+LYR TG  EYLYRAKAFA FL
Sbjct:   297 EREFLEASAAAAEVVWNRGLLKRVGICHGISGNAYVFLALYRATGRSEYLYRAKAFASFL 356

Query:   180 YDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
              DR  KL+++G+MHGGD PYSLFEG+ GM +LFLDM++PSEARFP YEL
Sbjct:   357 LDRGPKLLSKGEMHGGDSPYSLFEGVAGMAYLFLDMVDPSEARFPGYEL 405

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0019898 "extrinsic to membrane" evidence=ISS

TAIR|locus:2171800 GCL1 "GCR2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 114/231 (49%), Positives = 163/231 (70%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGR-RLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDM 59
             +G+ T+    +  +V  I+  GR   A+   CPL+Y +HG ++WGAA+GLAGI++VL+  
Sbjct:   204 LGQGTVPDHLLSPIVAAILAGGRVGAADHEACPLLYRFHGTRFWGAANGLAGILYVLLHF 263

Query:    60 ELKPDEVEDVKGTLRYMIKNRFP-SGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVF 118
              L  ++V+DV+GTLRYM+ NRFP SGNYP SEG+  D+LV W HGA G+ +TLAKA++VF
Sbjct:   264 PLSEEDVKDVQGTLRYMMSNRFPNSGNYPCSEGNPRDKLVQWAHGATGMAITLAKASQVF 323

Query:   119 G-EKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFAC 177
               E++F +AA++AGEVVWK GL+K+VG+  G++GN Y FLSLYRLTG+V Y  RAKAFA 
Sbjct:   324 PKERDFREAAIEAGEVVWKSGLVKKVGLADGVAGNAYAFLSLYRLTGDVVYEERAKAFAS 383

Query:   178 FLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             +L   A +L+        +  YSLF G+ G   L+ D++ P +++FP YE+
Sbjct:   384 YLCRDAIELVNMTSQET-EHDYSLFRGLAGPVCLWFDLVSPVDSKFPGYEI 433

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0019898 "extrinsic to membrane" evidence=ISS

RGD|1310809 Lancl2 "LanC lantibiotic synthetase component C-like 2 (bacterial)" [Rattus norvegicus (taxid:10116)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 116/236 (49%), Positives = 158/236 (66%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
             +G  T+    ++ VV  II++G+RL+   R    CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct:   214 IGPGTVGETAIKEVVTAIIESGKRLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYML 273

Query:    57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
             M  E K D+    E VK ++ Y+   +F SGNYPSS  +E+DRLVHWCHGAPGV   L +
Sbjct:   274 MQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLLR 333

Query:   114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
             A +VF E+++L+ A++  +V+W+RGLL++  GICHG +GN Y FLSLY+LT + +YLYRA
Sbjct:   334 AYQVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYQLTQDKKYLYRA 393

Query:   173 KAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
               FA +  D      A G     DRPYSLFEG+ G  H   DM+ P  ARFPA+EL
Sbjct:   394 CKFAEWCLDYG----AHG-CRIPDRPYSLFEGMAGAVHFLSDMLVPETARFPAFEL 444

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IEA;ISO

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=IEA;ISO

GO:0030864 "cortical actin cytoskeleton" evidence=IEA;ISO

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=IEA;ISO

MGI|MGI:1919085 Lancl2 "LanC (bacterial lantibiotic synthetase component C)-like 2" [Mus musculus (taxid:10090)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 116/236 (49%), Positives = 157/236 (66%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
             +G  T+    ++ VV  II++G+ L+   R    CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct:   214 IGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYML 273

Query:    57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
             M  E K D+    E VK ++ Y+   +F SGNYPSS  +E+DRLVHWCHGAPGV   L +
Sbjct:   274 MQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQ 333

Query:   114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
             A +VF E+++L+ A++  +V+W+RGLL++  GICHG SGN Y FLSLYRLT + +YLYRA
Sbjct:   334 AYQVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRA 393

Query:   173 KAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
               FA +  D      A G     DRPYSLFEG+ G  H   D++ P  ARFPA+EL
Sbjct:   394 CKFAEWCLDYG----AHG-CRIPDRPYSLFEGMAGAVHFLSDILVPETARFPAFEL 444

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=ISO

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=ISO

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=ISO

UNIPROTKB|I3LIW1 LANCL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 119/238 (50%), Positives = 156/238 (65%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
             MG   +  + ++ VVD II +G+ L+   R    CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct:   176 MGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAAHGMAGIYYML 235

Query:    57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
             M    K D+    E VK ++ YM   RF SGNYPSS  +E+DRLVHWCHGAPGV  TL +
Sbjct:   236 MQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQ 295

Query:   114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
             A +VF E+++L+ AV+  +V+W+RGLL++  GICHG +GN Y FLSLYRLT + +YLYRA
Sbjct:   296 AYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 355

Query:   173 KAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
               FA  C  Y       A G     DRPYSLFE + G  H   D++ P  ARFPA+EL
Sbjct:   356 CKFAEWCLEYG------AHG-CRIPDRPYSLFEVLXGAIHFLSDILAPETARFPAFEL 406

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=IEA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q9NS86 LANCL2 "LanC-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 113/236 (47%), Positives = 158/236 (66%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
             +G  T+  + ++ VV+ II++G+ L+   R    CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct:   214 IGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLLYQWHRKQYVGAAHGMAGIYYML 273

Query:    57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
             M    K D+    E VK ++ Y+   +F SGNYPSS  +E+DRLVHWCHGAPGV   L +
Sbjct:   274 MQPAAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQ 333

Query:   114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
             A +VF E+++L+ A++  +V+W+RGLL++  GICHG +GN Y FLSLYRLT + +YLYRA
Sbjct:   334 AYKVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 393

Query:   173 KAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
               FA +  D      A G     DRPYSLFEG+ G  H   D++ P  +RFPA+EL
Sbjct:   394 CKFAEWCLDYG----AHG-CRIPDRPYSLFEGMAGAIHFLSDVLGPETSRFPAFEL 444

GO:0003824 "catalytic activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005524 "ATP binding" evidence=NAS

GO:0005525 "GTP binding" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=IDA

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|A6QPG6 LANCL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 114/238 (47%), Positives = 156/238 (65%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRG----RCPLMYEWHGKKYWGAAHGLAGIMHVL 56
             +G   +  + ++ VV+ II++G+ L+       RCPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct:   191 IGPGAVCESAIKEVVNAIIESGKALSKEEKKVERCPLLYQWHRKQYVGAAHGMAGIYYML 250

Query:    57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
             M    K D+    E VK ++ YM   RF SGNYPSS  +E+DRLVHWCHGAPGV   L +
Sbjct:   251 MQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLMQ 310

Query:   114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
             A +VF E+++L+ AV+  +V+W+RGLL++  GICHG +GN Y FLSLY +T + +YLYRA
Sbjct:   311 AHKVFKEEKYLKDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYHITQDKKYLYRA 370

Query:   173 KAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
               FA  C  Y       A G     DRPYSLFEG+ G  H   D++ P  +RFPA+EL
Sbjct:   371 CKFAEWCLEYG------AHG-CRIPDRPYSLFEGMAGTIHFLSDILAPEASRFPAFEL 421

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=IEA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PEY8 LANCL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 114/238 (47%), Positives = 156/238 (65%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
             +G  T+  + ++ VV  II++G+ L+   R    CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct:   127 IGPGTVCESAIKEVVCAIIESGKTLSREERKAERCPLLYQWHRKQYVGAAHGMAGIYYML 186

Query:    57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
             M    K D+    E VK ++ Y+   RF SGNYPSS  +E+DRLVHWCHGAPGV   L +
Sbjct:   187 MQPAAKVDQETLTEMVKPSIDYVRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQ 246

Query:   114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
             A +VF E+++L+ A++  +V+W+RGLL++  GICHG +GN Y FLSLY LT + +YLYRA
Sbjct:   247 AYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYHLTQDKKYLYRA 306

Query:   173 KAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
               FA  C  Y       A G     DRPYSLFEG+ G  H   D++ P  +RFPA+EL
Sbjct:   307 CKFAEWCLEYG------AHG-CRIPDRPYSLFEGMAGAIHFLSDILAPETSRFPAFEL 357

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1C3R4 LANCL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 110/238 (46%), Positives = 152/238 (63%)

Query:     1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
             +  DT+  + ++ V+D II++G+  +   R    CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct:   212 IASDTVPQSIIKEVIDAIIESGKNFSKEERKTERCPLLYQWHRKQYVGAAHGVAGIYYML 271

Query:    57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
             M      D+    E VK ++ Y+   +F SGNYPSS  +E+DRLVHWCHGAPGV   L +
Sbjct:   272 MQPIANVDQETLTELVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQ 331

Query:   114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
             A + F E ++L+ A++  +V+W+RGLL++  GICHG +GN Y FLSLY LT + +YLYRA
Sbjct:   332 AYKTFKEDKYLKDAMECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYNLTQDKKYLYRA 391

Query:   173 KAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
               FA  C  Y       A G     DRPYSLFEG+ G  H   D+  P  +RFPA+EL
Sbjct:   392 CKFAEWCLEYG------AHG-CRIPDRPYSLFEGMAGAIHFLSDISVPETSRFPAFEL 442

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IEA

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
cd04794	343	cd04794, euk_LANCL, eukaryotic Lanthionine synthet	2e-98
pfam05147	352	pfam05147, LANC_like, Lanthionine synthetase C-lik	1e-80
cd04434	343	cd04434, LanC_like, LanC-like proteins	1e-50
cd04792	825	cd04792, LanM-like, LanM-like proteins	3e-16
TIGR03897	931	TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn	2e-13
cd04793	382	cd04793, LanC, LanC is the cyclase enzyme of the l	1e-10
TIGR03897	931	TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn	1e-08
pfam05147	352	pfam05147, LANC_like, Lanthionine synthetase C-lik	1e-04
COG4403	963	COG4403, LcnDR2, Lantibiotic modifying enzyme [Def	0.001

>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein

 Score =  289 bits (742), Expect = 2e-98
 Identities = 115/230 (50%), Positives = 157/230 (68%), Gaps = 11/230 (4%)

Query: 2   GKDTISTAQMRAVVDEIIKAGRRLA--NRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMD- 58
           G   I ++ ++++ D I+++GR  A   R  CPLMYEWHGK+Y GAAHGLAGI+++L+  
Sbjct: 118 GFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQT 177

Query: 59  --MELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSES-DRLVHWCHGAPGVTLTLAKAA 115
               LKP     +K +L Y++  +FPSGN+PSS G+   DRLV WCHGAPG+   LAKA 
Sbjct: 178 PLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAY 237

Query: 116 EVFGEKEFLQAAVDAGEVVWKRGLLKRV-GICHGISGNTYVFLSLYRLTGNVEYLYRAKA 174
            VF E+++L+AA+  GE++WKRGLLK+  G+CHGI+GN Y FL LYRLTG+++YLYRA  
Sbjct: 238 LVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACK 297

Query: 175 FACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFP 224
           FA FL +   K  A       DRP+SLFEG+ G      D+++P +A FP
Sbjct: 298 FAEFLINYGFKNGA----RIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Length = 343

>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein

 Score =  244 bits (625), Expect = 1e-80
 Identities = 99/221 (44%), Positives = 142/221 (64%), Gaps = 8/221 (3%)

Query: 14  VVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK----PDEVEDV 69
           +++ ++++GR LA+    PL+YEW+G    G AHGL+GI++ L+ + LK       +E +
Sbjct: 134 ILETLLESGRNLASE--SPLLYEWYGTVNLGFAHGLSGILYALLLLYLKGTGNEKLLELI 191

Query: 70  KGTLRYMIKNRFP-SGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAV 128
           K  L Y +  +FP SGN+P S G+E DR V WCHGAPG+ L L KAA+   E+E L+ A 
Sbjct: 192 KKALNYELSLKFPDSGNWPDSRGNERDRRVAWCHGAPGILLALLKAAKALNEEELLEEAE 251

Query: 129 DAGEVVWKRGLL-KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLI 187
           +A EVVWK+GLL K   +CHG+SGN Y+ L LYRLT + +YL RA  FA  + D  ++L 
Sbjct: 252 EALEVVWKKGLLLKNPSLCHGLSGNLYILLLLYRLTNDEKYLERANKFAEKILDYGKELG 311

Query: 188 AEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
               + GGD  + L EGI G+ +  LD++ P E+RFP+  L
Sbjct: 312 WLRGLPGGDESFGLMEGIAGILYFLLDLLNPEESRFPSALL 352

Lanthionines are thioether bridges that are putatively generated by dehydration of Ser and Thr residues followed by addition of cysteine residues within the peptide. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 (P40 seven-transmembrane-domain protein) and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Lanthionines are found in lantibiotics, which are peptide-derived, post-translationally modified antimicrobials produced by several bacterial strains. This region contains seven internal repeats. Length = 352

>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins

 Score =  167 bits (425), Expect = 1e-50
 Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 9/223 (4%)

Query: 3   KDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK 62
            + I    +R ++D +++ G+    + R P MY   G+   G AHGLAGI+  L+ +  K
Sbjct: 116 GEEIFLELIRKILDYLLELGKNGDGKIRWP-MYFPEGRVNLGLAHGLAGILLALLLLYKK 174

Query: 63  ---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSES--DRLVHWCHGAPGVTLTLAKAAEV 117
                    +K  L+Y  + +  SG +     S      LV WCHGAPG+ L L  A + 
Sbjct: 175 TVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKA 234

Query: 118 FGEKEFLQAAVDAGEVVWKRGLLKRV--GICHGISGNTYVFLSLYRLTGNVEYLYRAKAF 175
            G+ ++ +AA  A E+ WKRGLL+    G+CHGI+GN  + L LY+LTG++++L RA A 
Sbjct: 235 LGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALAL 294

Query: 176 ACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP 218
           A  L   A   +  G    GDR   L  G+ G+    L ++ P
Sbjct: 295 ALLLISHANGWLC-GGDSTGDRSPGLMTGLAGIALALLRLLNP 336

LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function. Length = 343

>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 20/220 (9%)

Query: 14  VVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMDM-ELKPDEV--ED 68
            +D  +K G  L          +         G AHG +GI   L+ + ++  D    + 
Sbjct: 608 FLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKL 667

Query: 69  VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLA---KAAEVFGE--KEF 123
               L+Y  +     G     +   S     WCHGAPG+ L      K  ++  E  KE 
Sbjct: 668 AHKALKYERRLFSEEGWNWPRKDGNSF-SAAWCHGAPGILLARLELLKFNDLDDEELKEE 726

Query: 124 LQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 183
           ++ A+       K G      +CHG  GN  + L   +  G+ +    A + A  +  + 
Sbjct: 727 IEIALKTTL---KEGFGNNHSLCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQG 783

Query: 184 QKLIAEGKMHG---GDRPYSLFEGIGGMTHLFLDMIEPSE 220
           +K    G + G   G     L  G+ G+ +  L +  P  
Sbjct: 784 KK---NGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAPDR 820

LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB. Length = 825

>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 57/224 (25%), Positives = 84/224 (37%), Gaps = 27/224 (12%)

Query: 14  VVDEIIKAGRRLANR-----GRCPLMYEWHGKKYWGAAHGLAGIMHVLM-------DMEL 61
           V++  I  G  L  +     G          K   G +HG AGI   L+       D   
Sbjct: 716 VLELAIACGEHLLKQAVKEEGGIAWKTPQDEKPLTGFSHGAAGIAWALLRLYKVTGDQRY 775

Query: 62  KPDEVEDVKGTLRYMIKNRF-PS-GNYPSS-EGSESDRLVHWCHGAPGVTLTLAKAAEVF 118
                E  K  L Y  ++ F P  GN+P   E +     V WCHGAPG+ L+     E+ 
Sbjct: 776 L----EAAKEALAYE-RSLFDPEEGNWPDLREEAGPSFPVAWCHGAPGILLSRLGLLEIL 830

Query: 119 GEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF 178
            + E  +    A E   K G      +CHG  GN  + L   ++  + E    A+  A  
Sbjct: 831 DDDEIDEDIEIALETTLKLGFGDNDSLCHGDLGNLEILLEAAKVLDDEELQELARRIASQ 890

Query: 179 LYDRAQKLIAEGK----MHGGDRPYSLFEGIGGMTHLFLDMIEP 218
           +  R  K    G+    +  G     L  G+ G+ +  L +  P
Sbjct: 891 VLARLTK---NGRYRLGLPRGVESPGLMTGLAGIGYGLLRLANP 931

Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge [Cellular processes, Toxin production and resistance]. Length = 931

>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine synthetase

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 37/188 (19%)

Query: 44  GAAHGLAGIMHVLMDMELK----PDEVEDVKGTLRYMIKNRFPSGNYPSSEG-SESDRLV 98
           G AHG+AG + +L   + +      ++E ++  + ++ + R  +   P   G   +   +
Sbjct: 169 GLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQI 228

Query: 99  H------------WCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR--GLLKRV- 143
                        WC+G PG+   L  A +   +++  +AA    +   K    L K + 
Sbjct: 229 GGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLIS 288

Query: 144 -GICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLF 202
             +CHG++G  ++F  LY+ T   E                + L+ +         YS  
Sbjct: 289 PTLCHGLAGLLFIFYLLYKDTNTNE-----------FKSALEYLLNQIISS-----YSEE 332

Query: 203 EGIGGMTH 210
           E  G    
Sbjct: 333 EPFGFKDI 340

Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. Length = 382

>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 36/184 (19%)

Query: 23  RRLANRGRCPLMY------EWHGKKYWGAAHGLAGIMHVLMDM-ELKPDEV--EDVKGTL 73
           R LA +   PL                GA  GL GI++ L  + +L  D     D K  L
Sbjct: 618 RDLARKALQPLRKYLETQLRLAKSMGLGAFSGLGGIIYALAHLGQLLNDSELLNDAKRIL 677

Query: 74  RYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGE- 132
             + +              + +  +    GA G  L L    EV G+ E L+ A+  GE 
Sbjct: 678 NRLEELI-----------IKDEEFLDLIGGAAGAILVLLNLYEVTGDPEVLELAIACGEH 726

Query: 133 -----------VVWKRGLLKR--VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL 179
                      + WK    ++   G  HG +G  +  L LY++TG+  YL  AK      
Sbjct: 727 LLKQAVKEEGGIAWKTPQDEKPLTGFSHGAAGIAWALLRLYKVTGDQRYLEAAK--EALA 784

Query: 180 YDRA 183
           Y+R+
Sbjct: 785 YERS 788

Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge [Cellular processes, Toxin production and resistance]. Length = 931

>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 102 HGAPGVTLTLAKAAEVFGEKEFLQAA---VDAGEVVWKRGLLKRVGICHGISGNTYVFLS 158
            G  G+ L L +  +V G++++L+ A   +              +    G++G       
Sbjct: 9   TGLAGIALFLLELYKVTGDEKYLELAHKYLKKIAKSLSSSGRDSISFFCGLAGIAAALAV 68

Query: 159 LYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFL 213
             +L G+ + L            R  +LI    +   + PY +  G  G+    L
Sbjct: 69  ASKLLGDYQLL-------LDYLKRLLELIENEILEDKNLPYDVISGRAGILLYLL 116

Lanthionines are thioether bridges that are putatively generated by dehydration of Ser and Thr residues followed by addition of cysteine residues within the peptide. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 (P40 seven-transmembrane-domain protein) and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Lanthionines are found in lantibiotics, which are peptide-derived, post-translationally modified antimicrobials produced by several bacterial strains. This region contains seven internal repeats. Length = 352

>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms]

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 23/182 (12%)

Query: 44  GAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMI--KNRFPSGNYPSSEGSESDRLVHWC 101
           G +HG +GI+  L+ +     E   +K     +   + +F            SD+   WC
Sbjct: 790 GFSHGASGIILTLLKLYEATGEESLLKKIKELLSYERMKF------------SDKFTRWC 837

Query: 102 HGAPGVT---LTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLS 158
            GAPG+    L L K  +       +Q A+         GL     +CHG  G   V L 
Sbjct: 838 SGAPGILVSRLLLKKIYDDESIDREIQQALKTIIN---NGLGND-SLCHGDFGIIEVLLH 893

Query: 159 LYRLTGNVEYLYRAKAFACFLYDRAQKL-IAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE 217
             ++  + E L  A   A  L  +A    I +G  H  +  + L  G+ G+ +  L +  
Sbjct: 894 YAKILSDSELLESANKLANELVSKAITYGINQGLNH-ANESFGLMNGVTGIGYSLLRISS 952

Query: 218 PS 219
           P 
Sbjct: 953 PK 954

Length = 963

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG2787	403	consensus Lanthionine synthetase C-like protein 1	100.0
cd04794	343	euk_LANCL eukaryotic Lanthionine synthetase C-like	100.0
PF05147	355	LANC_like: Lanthionine synthetase C-like protein;	100.0
cd04793	382	LanC LanC is the cyclase enzyme of the lanthionine	99.97
cd04434	343	LanC_like LanC-like proteins. LanC is the cyclase	99.97
cd04791	321	LanC_SerThrkinase Lanthionine synthetase C-like do	99.97
cd04792	825	LanM-like LanM-like proteins. LanM is a bifunction	99.96
COG4403	963	LcnDR2 Lantibiotic modifying enzyme [Defense mecha	99.93
cd04434	343	LanC_like LanC-like proteins. LanC is the cyclase	99.85
cd04794	343	euk_LANCL eukaryotic Lanthionine synthetase C-like	99.85
cd04791	321	LanC_SerThrkinase Lanthionine synthetase C-like do	99.83
cd04793	382	LanC LanC is the cyclase enzyme of the lanthionine	99.8
cd04792	825	LanM-like LanM-like proteins. LanM is a bifunction	99.77
PF05147	355	LANC_like: Lanthionine synthetase C-like protein;	99.62
KOG2787	403	consensus Lanthionine synthetase C-like protein 1	99.53
COG4403	963	LcnDR2 Lantibiotic modifying enzyme [Defense mecha	99.16
cd00249	384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	96.7
PF07944	520	DUF1680: Putative glycosyl hydrolase of unknown fu	96.68
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	96.24
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	95.63
COG1331	667	Highly conserved protein containing a thioredoxin	95.6
cd00249	384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	95.45
PF07944	520	DUF1680: Putative glycosyl hydrolase of unknown fu	95.36
COG3533	589	Uncharacterized protein conserved in bacteria [Fun	94.64
COG1331	667	Highly conserved protein containing a thioredoxin	94.01
PLN02993	763	lupeol synthase	92.93
PF03663	370	Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int	92.17
PF03663	370	Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int	91.43
PF07221	346	GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN	91.3
PF07470	336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	90.69
PLN03012	759	Camelliol C synthase	89.78
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	89.56
PF07470	336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	89.0
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	88.64
COG4225	357	Predicted unsaturated glucuronyl hydrolase involve	88.55
COG4225	357	Predicted unsaturated glucuronyl hydrolase involve	85.59
KOG2430	587	consensus Glycosyl hydrolase, family 47 [Carbohydr	83.96

>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]

Probab=100.00  E-value=1.2e-45  Score=308.65  Aligned_cols=224  Identities=63%  Similarity=1.190  Sum_probs=206.4

Q ss_pred             CCCCCCChhHHHHHHHHHHHhcHHhhhcCC--CCCceeecCccccccccchHHHHHHHHcccCCCch---HHHHHHHHHH
Q 027089            1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDE---VEDVKGTLRY   75 (228)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~---~~~~~~~l~~   75 (228)
                      .|+.++|.+.|.++|+.|+++++.+++...  +|+||+|+++.+.|.|||.+||++.|.......+.   .+.++..++|
T Consensus       174 ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldy  253 (403)
T KOG2787|consen  174 IGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDY  253 (403)
T ss_pred             cCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHH
Confidence            478999999999999999999999988865  99999999999999999999999999998765443   7889999999


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCC-CccccChhhHHH
Q 027089           76 MIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTY  154 (228)
Q Consensus        76 l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lCHG~aG~~~  154 (228)
                      +.+++|++||+|.+.+++.+..+.||||+||+++.+.+++++++++++++.+.++.+.+|++++.+. +++|||.+|+++
T Consensus       254 m~~~rfpsGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaY  333 (403)
T KOG2787|consen  254 MIQNRFPSGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAY  333 (403)
T ss_pred             HHHccCCCCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchh
Confidence            9999999999999887777888999999999999999999999999999999999999999998855 999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCCCC
Q 027089          155 VFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL  228 (228)
Q Consensus       155 ~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~~~~  228 (228)
                      +|+.+|+.|+|.+|+.+|.++++.++++...   . +...++.++|||.|.||.+++|+.+++|++.+||-|||
T Consensus       334 vFLsLyRLT~d~kYlyRA~kFae~lld~~~~---~-g~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~El  403 (403)
T KOG2787|consen  334 VFLSLYRLTGDMKYLYRAKKFAEWLLDYGFS---H-GCRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYEL  403 (403)
T ss_pred             hhHhHHHHcCcHHHHHHHHHHHHHHHhhhhh---c-cCCCCCCChhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence            9999999999999999999999999998742   1 22335678999999999999999999999999999986

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein

Probab=100.00  E-value=2e-36  Score=265.77  Aligned_cols=216  Identities=51%  Similarity=0.983  Sum_probs=180.7

Q ss_pred             CCChhHHHHHHHHHHHhcHHhhhc--CCCCCceeecCccccccccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHh
Q 027089            5 TISTAQMRAVVDEIIKAGRRLANR--GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKN   79 (228)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~   79 (228)
                      +...+.+.++++.+++..+.....  ...+.+|.|.+..++|+|||++||+++|..++..   .+..+.++++++++.+.
T Consensus       121 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~  200 (343)
T cd04794         121 KIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSL  200 (343)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHh
Confidence            345678888888888876544332  1345677788888999999999999999999764   44678899999999876


Q ss_pred             cCCCCCCCCCCCCC-CCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCC-CCccccChhhHHHHHH
Q 027089           80 RFPSGNYPSSEGSE-SDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLK-RVGICHGISGNTYVFL  157 (228)
Q Consensus        80 ~~~~g~w~~~~~~~-~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lCHG~aG~~~~ll  157 (228)
                      ..+.|+||+...+. ++...+||||++||+.+++.+++.++++++.+.++.+++.+|+.++.. ++++|||.+|++++|+
T Consensus       201 ~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL  280 (343)
T cd04794         201 QFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFL  280 (343)
T ss_pred             hccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHH
Confidence            55678999865432 345678999999999999999999999999999999999999888764 5899999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCC
Q 027089          158 SLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFP  224 (228)
Q Consensus       158 ~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~  224 (228)
                      .+++.+++++|+++|..+++.+++...+.    ....+..++|||+|.||++++|+++++|++..||
T Consensus       281 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~l~~G~aG~~~~ll~~~~p~~~~f~  343 (343)
T cd04794         281 LLYRLTGDLKYLYRACKFAEFLINYGFKN----GARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP  343 (343)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHhcchhhh----ccCCCCCCchhhccHHhHHHHHHHHcCcccccCC
Confidence            99999999999999999999988875432    1223457999999999999999999999999998

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.

>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others

Probab=100.00  E-value=2e-34  Score=252.58  Aligned_cols=218  Identities=23%  Similarity=0.435  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHHHhcHHhhhcCCCCCceee-cCccccccccchHHHHHHHHccc-CCC---chHHHHHHHHHHHHHhcC-C
Q 027089            9 AQMRAVVDEIIKAGRRLANRGRCPLMYEW-HGKKYWGAAHGLAGIMHVLMDME-LKP---DEVEDVKGTLRYMIKNRF-P   82 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~aHG~aGi~~~L~~~~-~~~---~~~~~~~~~l~~l~~~~~-~   82 (228)
                      ..+.++++++++...... ....+..+.| .+..++|||||.+||+++|++++ +..   ++.+.++++++++.+... .
T Consensus       129 ~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  207 (355)
T PF05147_consen  129 DIIEKILEKLLESIINDD-PSENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTD  207 (355)
T ss_dssp             HHHHHHHHHCCCHHCCCH-TCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TG
T ss_pred             HHHHHHHHHHHHHHhhcc-cccCCCccccCCCCccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcc
Confidence            455666666666654432 1123445556 67889999999999999999998 343   346789999999987554 3


Q ss_pred             CCCCCCCCCCCCCc-ccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC-CCCCCccccChhhHHHHHHHHH
Q 027089           83 SGNYPSSEGSESDR-LVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG-LLKRVGICHGISGNTYVFLSLY  160 (228)
Q Consensus        83 ~g~w~~~~~~~~~~-~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lCHG~aG~~~~ll~l~  160 (228)
                      +++||+.+...... +.+||||++||+++++.+.+.++++.+++.++++++.+++++ ...++|+|||.+|++.++..++
T Consensus       208 ~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~~~  287 (355)
T PF05147_consen  208 DGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQKGLFLNNPSLCHGTAGILEILLDLY  287 (355)
T ss_dssp             CCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-TCTTSS-STTSHHHHHHHHHHHH
T ss_pred             cCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccccCCCCceeCchHHhHHHHHHHH
Confidence            56699876432111 689999999999999999999999999999999998888866 5678999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCCC
Q 027089          161 RLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYE  227 (228)
Q Consensus       161 ~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~~~  227 (228)
                      +.+++++|.+.++++.+.+++...+............++|||+|.+||+++|+++.+|++++||-+-
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~~~~~~~l  354 (355)
T PF05147_consen  288 KYTGDEEYKELANKLIQKLLSYYDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDKPNWPSIL  354 (355)
T ss_dssp             HHH--HCCHHHHHHHHHHHCTTCCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGGS--TTT-
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCCCCCCccc
Confidence            9999999999999988877766544211111233566899999999999999999999999998653

The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.

>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase

Probab=99.97  E-value=2e-30  Score=230.68  Aligned_cols=184  Identities=20%  Similarity=0.315  Sum_probs=147.6

Q ss_pred             ccccccccchHHHHHHHHcccCC----CchHHHHHHHHHHHHHhcCC--CCCCCCCCC-----------CCCCccccccc
Q 027089           40 KKYWGAAHGLAGIMHVLMDMELK----PDEVEDVKGTLRYMIKNRFP--SGNYPSSEG-----------SESDRLVHWCH  102 (228)
Q Consensus        40 ~~~~G~aHG~aGi~~~L~~~~~~----~~~~~~~~~~l~~l~~~~~~--~g~w~~~~~-----------~~~~~~~~WC~  102 (228)
                      ..++|+|||++||+++|+.+++.    ++..+.++++++|+.+..+.  .++|++.+.           .....+.+|||
T Consensus       165 ~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wCh  244 (382)
T cd04793         165 HINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCY  244 (382)
T ss_pred             cccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCC
Confidence            45889999999999999999753    44678899999999875543  346654320           11234679999


Q ss_pred             CchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCC----CCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089          103 GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL----LKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF  178 (228)
Q Consensus       103 G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~  178 (228)
                      |++||+++++.+++.++|+++.+.+.++++.+++...    ..++++|||.+|++++|+.+++.++++++++.++++.+.
T Consensus       245 G~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~  324 (382)
T cd04793         245 GTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQ  324 (382)
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999988887765421    257999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcC--------CCCCCCCccccccchHHHHHHHHHccCCC--CCCC
Q 027089          179 LYDRAQKLIAEG--------KMHGGDRPYSLFEGIGGMTHLFLDMIEPS--EARF  223 (228)
Q Consensus       179 i~~~~~~~~~~g--------~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~--~~~~  223 (228)
                      ++++..+....+        ..+....++|||+|.|||+++|+++++|+  ++.|
T Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~~~~~~W  379 (382)
T cd04793         325 IISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGEIPDTNW  379 (382)
T ss_pred             HHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCCCCCCCC
Confidence            998876432111        01234568999999999999999999998  5555

Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.

>cd04434 LanC_like LanC-like proteins

Probab=99.97  E-value=8.3e-30  Score=221.64  Aligned_cols=216  Identities=34%  Similarity=0.597  Sum_probs=161.6

Q ss_pred             CCCChhHHHHHHHHHHHhcHHhhhcCCCCCcee---ecCccccccccchHHHHHHHHcccCCC---chHHHHHHHHHHHH
Q 027089            4 DTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE---WHGKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMI   77 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~G~aHG~aGi~~~L~~~~~~~---~~~~~~~~~l~~l~   77 (228)
                      ++-..+++.++++.+++......    ....|.   ..+..+.|++||.+||+++|.++++..   ...+.++++++++.
T Consensus       117 ~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~  192 (343)
T cd04434         117 EEIFLELIRKILDYLLELGKNGD----GKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYER  192 (343)
T ss_pred             CcCHHHHHHHHHHHHHHhhhhcc----CCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence            44456677778888877754442    222221   124578899999999999999998642   23566777777776


Q ss_pred             HhcCC-CCCCCCCC-CCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCC--CCCCccccChhhHH
Q 027089           78 KNRFP-SGNYPSSE-GSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL--LKRVGICHGISGNT  153 (228)
Q Consensus        78 ~~~~~-~g~w~~~~-~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lCHG~aG~~  153 (228)
                      +.... .+.|++.. ..+...+.+||||++||+++++.+++.++++++.+.+++.++.+++...  ..+++||||.+|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~  272 (343)
T cd04434         193 RLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNL  272 (343)
T ss_pred             HccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchH
Confidence            53333 34565422 2234557899999999999999999999999999999988888877654  36899999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCCC
Q 027089          154 YVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPA  225 (228)
Q Consensus       154 ~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~  225 (228)
                      ++++.+++.++++++.+.+.++...+....... .....+....++|||+|.|||+++|+++++| +..+|.
T Consensus       273 ~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~-~~~~~~  342 (343)
T cd04434         273 LILLLLYKLTGDLKFLARALALALLLISHANGW-LCGGDSTGDRSPGLMTGLAGIALALLRLLNP-KRSWPS  342 (343)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCCCchHHhhHHHHHHHHHHHhCC-ccccCC
Confidence            999999999999999999999887776654321 1111134567999999999999999999998 555554

LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.

>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases

Probab=99.97  E-value=4e-30  Score=223.15  Aligned_cols=189  Identities=18%  Similarity=0.253  Sum_probs=150.4

Q ss_pred             ceeecCccccccccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCcccccccCchHHHH
Q 027089           34 MYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDRLVHWCHGAPGVTL  109 (228)
Q Consensus        34 ~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~-~~g~w~~~~~~~~~~~~~WC~G~~Gi~~  109 (228)
                      .|......+.|++||.|||+++|..+++.   +++++.++++++++.+... ..++|.+.. +..+...+||||.+||++
T Consensus       126 ~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~wchG~aGi~~  204 (321)
T cd04791         126 LWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVD-EGARLLPYLCSGSAGLGL  204 (321)
T ss_pred             ccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcC-CCCccCcccCCCcHHHHH
Confidence            34333456789999999999999999875   3357889999999886433 345565432 223456789999999999


Q ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhc
Q 027089          110 TLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAE  189 (228)
Q Consensus       110 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~  189 (228)
                      +++.+++.++|+++.+.++++++.+.+.. ..++++|||.+|++.+++.+++.+++++|++.+.++.+.+++....... 
T Consensus       205 ~l~~l~~~~~d~~~~~~a~~~~~~~~~~~-~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  282 (321)
T cd04791         205 LMLRLEAITGDKRWRDEADGIAHAALSSC-YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIEG-  282 (321)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhhh-ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccCCccc-
Confidence            99999999999999999999988877543 4679999999999999999999999999999999999888876543110 


Q ss_pred             CCCCC---CCCccccccchHHHHHHHHHccCCCCCCCCC
Q 027089          190 GKMHG---GDRPYSLFEGIGGMTHLFLDMIEPSEARFPA  225 (228)
Q Consensus       190 g~~~~---~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~  225 (228)
                      ...++   ...++|||+|.|||+++|+++.++...+||+
T Consensus       283 ~~~~~~~~~~~~~gl~~G~aGi~~~ll~l~~~~~~~~p~  321 (321)
T cd04791         283 PVFPGDQGLRISTDLATGTAGILLFLLRLLTRARSWLPF  321 (321)
T ss_pred             cccCCccceeeccccccchHHHHHHHHHHhcCCcccCCC
Confidence            01122   2457999999999999999999987778885

Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.

>cd04792 LanM-like LanM-like proteins

Probab=99.96  E-value=2.9e-28  Score=235.67  Aligned_cols=178  Identities=22%  Similarity=0.321  Sum_probs=147.1

Q ss_pred             CccccccccchHHHHHHHHcccCCC---chHHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCcccccccCchHHHHHHHHH
Q 027089           39 GKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKA  114 (228)
Q Consensus        39 ~~~~~G~aHG~aGi~~~L~~~~~~~---~~~~~~~~~l~~l~~~~~-~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~  114 (228)
                      ...+.|++||.+||+++|+.+++..   .+.+.++++++++.+... ..++|+..  .......+||||++||+++++.+
T Consensus       635 ~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~--~~~~~~~~WChG~~GI~lal~~~  712 (825)
T cd04792         635 QPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRK--DGNSFSAAWCHGAPGILLARLEL  712 (825)
T ss_pred             ccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCc--CcCCCCCcccCCcHHHHHHHHHH
Confidence            4568899999999999999998643   346788888988865322 24579832  22345679999999999999999


Q ss_pred             HHh--hCcHHHHHHHHHHHHHHHHhCCCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh-hhcCC
Q 027089          115 AEV--FGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKL-IAEGK  191 (228)
Q Consensus       115 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~-~~~g~  191 (228)
                      .+.  ++++.+.+++..+++.+++.+...++|||||.+|++++|+.+++.++++++.+.+.+++..++++..+. +.. .
T Consensus       713 ~~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~-g  791 (825)
T cd04792         713 LKFNDLDDEELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQGKKNGWLC-G  791 (825)
T ss_pred             HhcCccchHHHHHHHHHHHHHHHHhcCCCCCeecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCccC-C
Confidence            998  788999999999998888777667899999999999999999999999999999999999988887652 112 2


Q ss_pred             CCCCCCccccccchHHHHHHHHHccCCC
Q 027089          192 MHGGDRPYSLFEGIGGMTHLFLDMIEPS  219 (228)
Q Consensus       192 ~~~~~~~~gl~~G~aGi~~~Ll~l~~~~  219 (228)
                      .+....++|||+|.|||+|+|+|+++|+
T Consensus       792 ~~~~~~~~glm~G~aGIgy~LLrl~~p~  819 (825)
T cd04792         792 LPRGFESPGLMTGLAGIGYGLLRLAAPD  819 (825)
T ss_pred             CCCCCCCchhhhhHHHHHHHHHhhhCCC
Confidence            3445579999999999999999999984

LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.

>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]

Probab=99.93  E-value=1.8e-25  Score=207.69  Aligned_cols=198  Identities=21%  Similarity=0.356  Sum_probs=156.9

Q ss_pred             HHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCch---HHHHHHHHHHHHHhcCCCCCCCCC
Q 027089           13 AVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSS   89 (228)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~---~~~~~~~l~~l~~~~~~~g~w~~~   89 (228)
                      +..+-++..++.+...+-...-  +. +..+||+||+|||+++|..+++.++.   ++.+.+.+.+++. ++.+      
T Consensus       762 k~l~~ais~~~~l~~~~v~~d~--s~-~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~~~Er~-~f~~------  831 (963)
T COG4403         762 KFLELAISLGRILMEKIVGNDS--SE-TVLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLSYERM-KFSD------  831 (963)
T ss_pred             HHHHHHHHHHHHHHHHhhcccc--cc-ceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHH------
Confidence            3445556666666543211111  22 78899999999999999999986543   6778888887764 4421      


Q ss_pred             CCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCCCccccChhhHHHHHHHHHHHhCCHHHH
Q 027089           90 EGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYL  169 (228)
Q Consensus        90 ~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~  169 (228)
                            ....||||.+||+++|+.+.+.++|+.++++++.+++.+++.++. ++++|||+.|++++++.+.+++++++.+
T Consensus       832 ------~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~glg-n~~~Chgdfg~ie~l~~~a~~l~~~~l~  904 (963)
T COG4403         832 ------KFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIINNGLG-NDSLCHGDFGIIEVLLHYAKILSDSELL  904 (963)
T ss_pred             ------HHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHhccCC-CccccccchHHHHHHHHHHHHhCCHHHH
Confidence                  145799999999999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCC-CCCCCCCC
Q 027089          170 YRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPS-EARFPAYE  227 (228)
Q Consensus       170 ~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~-~~~~~~~~  227 (228)
                      +.|.+.+..+++++.+....-..+....++|||+|.+||||.|+|..+|. -|.+..+|
T Consensus       905 es~~~~~~~~~~k~~~~g~~~~~~~~~~~~glm~GvtGigY~lLR~~~p~~vpsiL~le  963 (963)
T COG4403         905 ESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGIGYSLLRISSPKFVPSILWLE  963 (963)
T ss_pred             HHHHHHHHHHHHhhccccccccCCCccchhHHHhhhHHHHHHHHHHhCcccCCceeecC
Confidence            99999988888887653111123335668999999999999999999984 46666553

>cd04434 LanC_like LanC-like proteins

Probab=99.85  E-value=1.4e-20  Score=163.71  Aligned_cols=170  Identities=19%  Similarity=0.208  Sum_probs=128.4

Q ss_pred             ccccccccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCC-C--CCCCCCCCCCCcccccccCchHHHHHHHH
Q 027089           40 KKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPS-G--NYPSSEGSESDRLVHWCHGAPGVTLTLAK  113 (228)
Q Consensus        40 ~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~-g--~w~~~~~~~~~~~~~WC~G~~Gi~~al~~  113 (228)
                      ..+.++.||.||++++|..++..   +...+.+.++.+++.+..... .  .|+. ...+.....+||||.+||+++++.
T Consensus        92 ~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~~HG~~Gi~~~l~~  170 (343)
T cd04434          92 DLNYDLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPM-YFPEGRVNLGLAHGLAGILLALLL  170 (343)
T ss_pred             CCCcceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceee-eccCCccccchhhhhHHHHHHHHH
Confidence            45679999999999999999864   345677888888887643322 1  2431 112234567999999999999999


Q ss_pred             HHHhhCcHHHHHHHHHHHHHHHHh---C------------CCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089          114 AAEVFGEKEFLQAAVDAGEVVWKR---G------------LLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF  178 (228)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~  178 (228)
                      +.+.++++.+.+.++.+.....+.   .            ...+++||||.+|++.+++.+++.++++++.+.+.+..+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~  250 (343)
T cd04434         171 LYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALEL  250 (343)
T ss_pred             HHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            999998777777776665543221   0            1134899999999999999999999999999998887766


Q ss_pred             HHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCC
Q 027089          179 LYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPS  219 (228)
Q Consensus       179 i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~  219 (228)
                      +......         ...+++||+|.+|++++++++++..
T Consensus       251 ~~~~~~~---------~~~~~~lChG~~G~~~~ll~l~~~~  282 (343)
T cd04434         251 AWKRGLL---------ELKNPGLCHGIAGNLLILLLLYKLT  282 (343)
T ss_pred             HHHhhhc---------cCCCCCcCcCccchHHHHHHHHHHh
Confidence            6555321         0458999999999999999987654

LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein

Probab=99.85  E-value=1.5e-20  Score=165.19  Aligned_cols=168  Identities=18%  Similarity=0.230  Sum_probs=121.6

Q ss_pred             cccccchHHHHHHHHcccCCCc----hHHHHHHHHHHHHHh---cCC--CCCCCCCCCCCCCcccccccCchHHHHHHHH
Q 027089           43 WGAAHGLAGIMHVLMDMELKPD----EVEDVKGTLRYMIKN---RFP--SGNYPSSEGSESDRLVHWCHGAPGVTLTLAK  113 (228)
Q Consensus        43 ~G~aHG~aGi~~~L~~~~~~~~----~~~~~~~~l~~l~~~---~~~--~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~  113 (228)
                      ..+.||.||++++|..+++..+    ..+.+.++++.+.+.   ...  ...|+...........+||||.+||+++++.
T Consensus        97 ~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~  176 (343)
T cd04794          97 DELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQ  176 (343)
T ss_pred             hhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHh
Confidence            4788999999999999976421    234455555443321   111  1235433221223457999999999999999


Q ss_pred             HHHhhCcHHHHHHHHHHHHHHHHh----CCC----------CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027089          114 AAEVFGEKEFLQAAVDAGEVVWKR----GLL----------KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL  179 (228)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i  179 (228)
                      +.+.++++++.+.+.++++.+.+.    +..          ...+||||.+|++.+++.++++++++++.+.+.+..+.+
T Consensus       177 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~  256 (343)
T cd04794         177 TPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELI  256 (343)
T ss_pred             hhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999889999999999888766443    110          125799999999999999999999999999888776654


Q ss_pred             HHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCC
Q 027089          180 YDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE  220 (228)
Q Consensus       180 ~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~  220 (228)
                      ..+       | ..  ..++|||||.+|+++.|++++++..
T Consensus       257 ~~~-------g-~~--~~~~~lCHG~~G~~~~lL~~~~~~~  287 (343)
T cd04794         257 WKR-------G-LL--KKGPGLCHGIAGNAYAFLLLYRLTG  287 (343)
T ss_pred             HHh-------C-Cc--cCCCccccCccchHHHHHHHHHHhC
Confidence            322       1 11  1368999999999999999887654

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.

>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases

Probab=99.83  E-value=1.7e-19  Score=156.48  Aligned_cols=165  Identities=20%  Similarity=0.199  Sum_probs=128.3

Q ss_pred             cccccccchHHHHHHHHcccCC--CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhh
Q 027089           41 KYWGAAHGLAGIMHVLMDMELK--PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVF  118 (228)
Q Consensus        41 ~~~G~aHG~aGi~~~L~~~~~~--~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~  118 (228)
                      .+.++.||.+|++++|..++..  +++.+.++++.+++.+.......|+... +......+||||.+||+++++.+++.+
T Consensus        77 ~~~dl~~G~aG~~~~ll~l~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~G~~hG~aGi~~~L~~l~~~t  155 (321)
T cd04791          77 LNIDLASGLAGIGLALLYFARTGDPALLEAAAKIAELLAEALERGDPALLWP-DFDRVDHGLLHGWAGIALFLLRLYKAT  155 (321)
T ss_pred             cCCccccchHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccccccc-cCCCCCCccccCcHHHHHHHHHHHHHH
Confidence            4679999999999999998765  3356788888888876433222222111 122345799999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHhCC-------------CCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Q 027089          119 GEKEFLQAAVDAGEVVWKRGL-------------LKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQK  185 (228)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~  185 (228)
                      +|+++.+.++++++...+...             ...+.+|||.+|++.+++.+++.++|++|.+.+++..+.+....  
T Consensus       156 ~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~--  233 (321)
T cd04791         156 GDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC--  233 (321)
T ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh--
Confidence            999999999998877643210             02367999999999999999999999999999888766664332  


Q ss_pred             hhhcCCCCCCCCccccccchHHHHHHHHHccCC
Q 027089          186 LIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP  218 (228)
Q Consensus       186 ~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~  218 (228)
                                ..+++||+|.+|++++++.+.+.
T Consensus       234 ----------~~~~~lchG~~G~~~~l~~~~~~  256 (321)
T cd04791         234 ----------YANPGLFSGTAGLGAHLNDLAAE  256 (321)
T ss_pred             ----------ccCccccCCcHhHHHHHHhhccc
Confidence                      24789999999999999988764

Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.

>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase

Probab=99.80  E-value=3.5e-18  Score=152.15  Aligned_cols=173  Identities=16%  Similarity=0.112  Sum_probs=121.9

Q ss_pred             cccccccchHHHHHHHHccc-CCCchHHHHHHHHHHHHHhcCC--CCCCCCCC---CC------CCCcccccccCchHHH
Q 027089           41 KYWGAAHGLAGIMHVLMDME-LKPDEVEDVKGTLRYMIKNRFP--SGNYPSSE---GS------ESDRLVHWCHGAPGVT  108 (228)
Q Consensus        41 ~~~G~aHG~aGi~~~L~~~~-~~~~~~~~~~~~l~~l~~~~~~--~g~w~~~~---~~------~~~~~~~WC~G~~Gi~  108 (228)
                      .+.+|.||.||++.+|...+ ...+..+.+.+.++.+.+....  .+.|+...   ..      ......+||||.+||+
T Consensus        99 ~~yD~i~G~aGi~~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~  178 (382)
T cd04793          99 TNYDVISGLSGIGRYLLLRHEPDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEFPEGHINLGLAHGIAGPL  178 (382)
T ss_pred             CCCceeechHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccCCCccccccchhcchHHH
Confidence            34699999999999999887 3333344566666665543221  12243221   00      1123569999999999


Q ss_pred             HHHHHHHHhh-CcHHHHHHHHHHHHHHHHh--------------------------CCCCCCccccChhhHHHHHHHHHH
Q 027089          109 LTLAKAAEVF-GEKEFLQAAVDAGEVVWKR--------------------------GLLKRVGICHGISGNTYVFLSLYR  161 (228)
Q Consensus       109 ~al~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~lCHG~aG~~~~ll~l~~  161 (228)
                      +++..+++.. .++++.+.+.++++...+.                          ....+++||||.+|++.+++.+++
T Consensus       179 ~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~  258 (382)
T cd04793         179 ALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGK  258 (382)
T ss_pred             HHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHH
Confidence            9999998876 7788888887775442210                          001247899999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCC
Q 027089          162 LTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE  220 (228)
Q Consensus       162 ~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~  220 (228)
                      .++++++.+.+.+..+.+..+....       ....+++||||.+|+++++++++++..
T Consensus       259 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~lChG~~G~~~~l~~~~~~~~  310 (382)
T cd04793         259 ALDDQKLQEAAEKILKAALKDKKQL-------SKLISPTLCHGLAGLLFIFYLLYKDTN  310 (382)
T ss_pred             HhCCHHHHHHHHHHHHHHHhChhhh-------ccCCCCCcCccHHHHHHHHHHHHHHhC
Confidence            9999999998888766655432111       123588999999999999999887654

Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.

>cd04792 LanM-like LanM-like proteins

Probab=99.77  E-value=1.1e-17  Score=162.22  Aligned_cols=164  Identities=18%  Similarity=0.150  Sum_probs=123.3

Q ss_pred             cccccccchHHHHHHHHcccCCC---chHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHh
Q 027089           41 KYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEV  117 (228)
Q Consensus        41 ~~~G~aHG~aGi~~~L~~~~~~~---~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~  117 (228)
                      ...++.||.||++++|+.+++..   ...+.+.++++++.+.......|..  ..+.....+||||.+||+++++.+++.
T Consensus       581 ~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~--~~~~~~~~G~aHG~sGi~~aL~~l~~~  658 (825)
T cd04792         581 EKLDFISGAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIG--PAEQPNLTGFAHGASGIAWALLRLYKV  658 (825)
T ss_pred             cCCCEeeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCcc--cccccccccccccHHHHHHHHHHHHHH
Confidence            45699999999999999998642   3467788888888764333223322  112345679999999999999999999


Q ss_pred             hCcHHHHHHHHHHHHHHHHhC------------CCCCCccccChhhHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHH
Q 027089          118 FGEKEFLQAAVDAGEVVWKRG------------LLKRVGICHGISGNTYVFLSLYRL--TGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~lCHG~aG~~~~ll~l~~~--~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      ++++++.+.+.++++......            .....+||||.+|++.+++.+++.  .+++.+.+.+.+..+.+....
T Consensus       659 ~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~  738 (825)
T cd04792         659 TGDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEG  738 (825)
T ss_pred             cCcHHHHHHHHHHHHHHHHhcCHhhcCCCCcCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhc
Confidence            999999999988876542210            012478999999999999999999  678777777766655443321


Q ss_pred             hhhhhcCCCCCCCCccccccchHHHHHHHHHccC
Q 027089          184 QKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE  217 (228)
Q Consensus       184 ~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~  217 (228)
                                 ...+++||||.+|++.+++.+.+
T Consensus       739 -----------~~~~~slCHG~~Gil~~ll~~~~  761 (825)
T cd04792         739 -----------FGNNHSLCHGDLGNLEILLYAAK  761 (825)
T ss_pred             -----------CCCCCeecCCCcchHHHHHHHHH
Confidence                       22478899999999999998765

LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.

>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others

Probab=99.62  E-value=2.1e-15  Score=132.12  Aligned_cols=165  Identities=19%  Similarity=0.247  Sum_probs=116.1

Q ss_pred             cccccchHHHHHHHHcccC---CCchHHHHHHHHHHHHHhcCCCC--CCCCCCCC-CCCcccccccCchHHHHHHHHHH-
Q 027089           43 WGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPSG--NYPSSEGS-ESDRLVHWCHGAPGVTLTLAKAA-  115 (228)
Q Consensus        43 ~G~aHG~aGi~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~~~g--~w~~~~~~-~~~~~~~WC~G~~Gi~~al~~~~-  115 (228)
                      ..+-+|.+|++.++..+++   .+...+.+.+.++.+.+......  ..+..... ......++.||.+||++++..++ 
T Consensus       102 ~D~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~  181 (355)
T PF05147_consen  102 YDLLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSENQIGSEWKEGFINLGFAHGIAGILYALLRLYK  181 (355)
T ss_dssp             CSTTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCH
T ss_pred             chhhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccCCCccccCCCCccCCccccHHHHHHHHHHhhh
Confidence            6899999999999998874   23345667777766654332211  00000000 22346799999999999999998 


Q ss_pred             HhhCcHHHHHHHHHHHHHHHHhC------C----C-C----CCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 027089          116 EVFGEKEFLQAAVDAGEVVWKRG------L----L-K----RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY  180 (228)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~------~----~-~----~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~  180 (228)
                      +.++++++.+.+++.++...+..      .    . .    .++||||.+|++.++..+++.++++.+.+.+.+..+.+.
T Consensus       182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (355)
T PF05147_consen  182 KGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESIL  261 (355)
T ss_dssp             HT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             cccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            68899999999998887765432      1    0 1    479999999999999999999999999999888776665


Q ss_pred             HHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccC
Q 027089          181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE  217 (228)
Q Consensus       181 ~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~  217 (228)
                      +...          ...++++|||.+|++++++.+++
T Consensus       262 ~~~~----------~~~~~~lCHG~aG~~~~l~~~~~  288 (355)
T PF05147_consen  262 QKGL----------FLNNPSLCHGTAGILEILLDLYK  288 (355)
T ss_dssp             HH-T----------CTTSS-STTSHHHHHHHHHHHHH
T ss_pred             Hccc----------cCCCCceeCchHHhHHHHHHHHH
Confidence            5321          23589999999999999998875

The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.

>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]

Probab=99.53  E-value=3.4e-14  Score=120.05  Aligned_cols=166  Identities=17%  Similarity=0.309  Sum_probs=118.1

Q ss_pred             cccchHHHHHHHHcccCC--Cc--hHHHHHHHHHHHHHh--cC-CCCCCCCCC-CC-CCCcccccccCchHHHHHHHHHH
Q 027089           45 AAHGLAGIMHVLMDMELK--PD--EVEDVKGTLRYMIKN--RF-PSGNYPSSE-GS-ESDRLVHWCHGAPGVTLTLAKAA  115 (228)
Q Consensus        45 ~aHG~aGi~~~L~~~~~~--~~--~~~~~~~~l~~l~~~--~~-~~g~w~~~~-~~-~~~~~~~WC~G~~Gi~~al~~~~  115 (228)
                      +-.|-+|++++++.+.+.  ++  ..+.++++++.++..  .. +.++=|... -+ ......+=.||.+||...++...
T Consensus       156 lLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~  235 (403)
T KOG2787|consen  156 LLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPT  235 (403)
T ss_pred             HHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCC
Confidence            446899999999988653  11  245566666665541  11 111100000 00 11223445999999999998854


Q ss_pred             HhhCcHHHHHHHHHHHHHHHHhCCC-----------CC--CccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089          116 EVFGEKEFLQAAVDAGEVVWKRGLL-----------KR--VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR  182 (228)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~  182 (228)
                      -..+++...++++..++..+++.+.           .+  ..||||..|+++.|..+|+++++++|++.|.+..+-+.++
T Consensus       236 L~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~r  315 (403)
T KOG2787|consen  236 LKVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKR  315 (403)
T ss_pred             CCCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            4455677888999999998775432           11  7899999999999999999999999999999998888777


Q ss_pred             HhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCC
Q 027089          183 AQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE  220 (228)
Q Consensus       183 ~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~  220 (228)
                      ..       +   +..+|+|+|+||.+|++|.++..++
T Consensus       316 Gl-------L---kkg~GichGvaGNaYvFLsLyRLT~  343 (403)
T KOG2787|consen  316 GL-------L---KKGVGICHGVAGNAYVFLSLYRLTG  343 (403)
T ss_pred             hh-------h---hcCCcccccccCchhhhHhHHHHcC
Confidence            42       1   2368999999999999999987543

>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]

Probab=99.16  E-value=2.6e-09  Score=100.93  Aligned_cols=203  Identities=18%  Similarity=0.149  Sum_probs=146.0

Q ss_pred             CCCCCChhHHHHHHHHHHHhcHHhhhcC--CCCCceeecC-----------ccccccccchHHHHHHHHcccCCCc---h
Q 027089            2 GKDTISTAQMRAVVDEIIKAGRRLANRG--RCPLMYEWHG-----------KKYWGAAHGLAGIMHVLMDMELKPD---E   65 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------~~~~G~aHG~aGi~~~L~~~~~~~~---~   65 (228)
                      -+.++|.|.+-++...+-++-...+.+.  +....|.|.+           ....++--|.+||+.+++.+...++   +
T Consensus       589 ~~~ti~~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y  668 (963)
T COG4403         589 SKHTIDNEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYY  668 (963)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHH
Confidence            3567888877665555555544434331  3344444322           2466899999999999999987543   4


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCCc
Q 027089           66 VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KRVG  144 (228)
Q Consensus        66 ~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  144 (228)
                      .+.+.+++.=+.+ ...+.        ..+...+=..|.+|..+|+..++..+.|..+...+++.+..+...... +++.
T Consensus       669 ~~ia~~~L~~~~~-sv~~~--------~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d  739 (963)
T COG4403         669 KEIAIKALQDSRK-SVNNN--------LNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPD  739 (963)
T ss_pred             HHHHHHHHHHHHH-hhhhc--------cCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcc
Confidence            5666666655543 22111        112233457899999999999999999999988888877665543322 4588


Q ss_pred             cccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCC
Q 027089          145 ICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP  218 (228)
Q Consensus       145 lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~  218 (228)
                      +--|.+|++.+|..+|+.+++|++++.|..+.+.+.+.....  +   ..+..-.|+-+|.|||+++|+.++..
T Consensus       740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~--d---~s~~~l~gfshg~sgi~~tL~~ly~~  808 (963)
T COG4403         740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGN--D---SSETVLLGFSHGASGIILTLLKLYEA  808 (963)
T ss_pred             hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcc--c---cccceecccccchHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988776542  1   11234679999999999999998864

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid

Probab=96.70  E-value=0.036  Score=49.15  Aligned_cols=139  Identities=21%  Similarity=0.158  Sum_probs=92.5

Q ss_pred             ccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcC-CC-CCCCCCCC-CCCCcccc-cccCchHHHHHHHHHHHhh
Q 027089           46 AHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRF-PS-GNYPSSEG-SESDRLVH-WCHGAPGVTLTLAKAAEVF  118 (228)
Q Consensus        46 aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~-~~-g~w~~~~~-~~~~~~~~-WC~G~~Gi~~al~~~~~~~  118 (228)
                      ....+=.+++++.++..   ++.++.+++.++++.++.. .. |.|..... +..+.... =++.-+=++.++..+++.+
T Consensus        52 ~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at  131 (384)
T cd00249          52 LWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVG  131 (384)
T ss_pred             EEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhc
Confidence            55666678888887753   4468899999999997544 23 66543321 11111111 2555566778888899999


Q ss_pred             CcHHHHHHHHHHHHHHHHhCC------C----CCCccccChhhH---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 027089          119 GEKEFLQAAVDAGEVVWKRGL------L----KRVGICHGISGN---TYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQ  184 (228)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~------~----~~~~lCHG~aG~---~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~  184 (228)
                      +++++++.++++++.+.+.-.      .    .+..--++..+.   +..++.++++|++++|++.|+++.+.+.....
T Consensus       132 ~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~  210 (384)
T cd00249         132 GDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFI  210 (384)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            999999999998877654321      0    000111222233   46788899999999999999999888877653

Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function

Probab=96.68  E-value=0.039  Score=51.50  Aligned_cols=132  Identities=18%  Similarity=0.223  Sum_probs=86.9

Q ss_pred             ccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCC---CCCCC--CCCCCccc----ccccCchHHHHHHHHH
Q 027089           44 GAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGN---YPSSE--GSESDRLV----HWCHGAPGVTLTLAKA  114 (228)
Q Consensus        44 G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~---w~~~~--~~~~~~~~----~WC~G~~Gi~~al~~~  114 (228)
                      -+.|=++|+++++.... ..+..+.+.+.++.+.+.|..+|.   ++...  .....-..    -||.  --++-+++..
T Consensus        61 ~~g~wl~a~a~~~~~~~-D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~--~~ll~gl~~~  137 (520)
T PF07944_consen   61 DVGKWLEAAAYAYAYTG-DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCL--GKLLEGLIDY  137 (520)
T ss_pred             cHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehH--hHHHHHHHHH
Confidence            34466677776665442 223356788888888876666662   33322  00001011    2442  3366778888


Q ss_pred             HHhhCcHHHHHHHHHHHHHHHHh--CCCC---CCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089          115 AEVFGEKEFLQAAVDAGEVVWKR--GLLK---RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF  178 (228)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~  178 (228)
                      ++++++++.++.+.+.++.+.+.  .+..   ...+.-|..|+.+.+..+|+.|+|++|++.|+.+.+.
T Consensus       138 y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~  206 (520)
T PF07944_consen  138 YEATGNERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ  206 (520)
T ss_pred             HHHHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            89999999999999999888321  1221   1345557888999999999999999999999887543

One member of this family is annotated as a possible arabinosidase, but no references were found to back this.

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=96.24  E-value=0.13  Score=44.30  Aligned_cols=133  Identities=11%  Similarity=0.143  Sum_probs=84.8

Q ss_pred             chHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC--cccccccC-chHHHHHHHHHHHhhC--
Q 027089           48 GLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHG-APGVTLTLAKAAEVFG--  119 (228)
Q Consensus        48 G~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~--~~~~WC~G-~~Gi~~al~~~~~~~~--  119 (228)
                      +..--+-+|++++..   ..+.+.+.+.++|+++-++++|.||.-......  ...-++.. +..++-.+..+.+..+  
T Consensus        45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~  124 (290)
T TIGR02474        45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF  124 (290)
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence            456678888888764   346889999999999989999999964322111  11123322 4455555555554322  


Q ss_pred             -------cHHHHHHHHHHHHHHHHhCCC-------------------------CCCccccC-hhhHHHHHHHHHHHhCCH
Q 027089          120 -------EKEFLQAAVDAGEVVWKRGLL-------------------------KRVGICHG-ISGNTYVFLSLYRLTGNV  166 (228)
Q Consensus       120 -------~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~lCHG-~aG~~~~ll~l~~~~~~~  166 (228)
                             .++....+.++++.+++....                         ..+++|-+ .+|++.+|+.+.+  .++
T Consensus       125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~--ps~  202 (290)
T TIGR02474       125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPN--PSA  202 (290)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCC--CCH
Confidence                   157777788888887653210                         13778866 6788888877763  456


Q ss_pred             HHHHHHHHHHHHHHHH
Q 027089          167 EYLYRAKAFACFLYDR  182 (228)
Q Consensus       167 ~~~~~a~~~~~~i~~~  182 (228)
                      ++++.+....+.+...
T Consensus       203 ~i~~ai~~A~~W~~~~  218 (290)
T TIGR02474       203 EIKEAIRAGVAWFDTS  218 (290)
T ss_pred             HHHHHHHHHHHHHHHC
Confidence            7777766665555444

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=95.63  E-value=0.051  Score=46.68  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=80.0

Q ss_pred             chHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC--cccccccC-chHHHHHHHHHHHhhCcH
Q 027089           48 GLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHG-APGVTLTLAKAAEVFGEK  121 (228)
Q Consensus        48 G~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~--~~~~WC~G-~~Gi~~al~~~~~~~~~~  121 (228)
                      ....-+-+|++++..   ..+.+.+.+.++|+++.++++|.||..-+....  ....+-.+ +.+++..+..+.+..++.
T Consensus        40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~  119 (289)
T PF09492_consen   40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF  119 (289)
T ss_dssp             TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred             hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence            346678889999863   336789999999999989999999865322111  11122233 345555555565554433


Q ss_pred             ---------HHHHHHHHHHHHHHHhCC-------------------------CCCCccccC-hhhHHHHHHHHHHHhCCH
Q 027089          122 ---------EFLQAAVDAGEVVWKRGL-------------------------LKRVGICHG-ISGNTYVFLSLYRLTGNV  166 (228)
Q Consensus       122 ---------~~~~~~~~~~~~~~~~~~-------------------------~~~~~lCHG-~aG~~~~ll~l~~~~~~~  166 (228)
                               +..+.+.++++++++...                         -..+++|-+ .+|++.+|+.+++-+  +
T Consensus       120 ~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps--~  197 (289)
T PF09492_consen  120 AFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS--P  197 (289)
T ss_dssp             TTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS----H
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC--H
Confidence                     666777777788765321                         023888877 789999998888776  6


Q ss_pred             HHHHHHHHHHHHHH
Q 027089          167 EYLYRAKAFACFLY  180 (228)
Q Consensus       167 ~~~~~a~~~~~~i~  180 (228)
                      ++++.+...++.+-
T Consensus       198 ~v~~aI~~AvaWl~  211 (289)
T PF09492_consen  198 EVLAAIEAAVAWLE  211 (289)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777666555543

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=1.7  Score=41.49  Aligned_cols=128  Identities=18%  Similarity=0.244  Sum_probs=84.4

Q ss_pred             HHHHHHcccC---CCchHHHHHHHHHHHHHhcCCCC---CCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHH
Q 027089           52 IMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPSG---NYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQ  125 (228)
Q Consensus        52 i~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~~~g---~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~  125 (228)
                      .+.+|+..+.   .+++.+.++++.+|+.++.+.+.   .|.+..    ....+.--=-+=.+.+++.+++.+.+.++++
T Consensus       416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~----a~~~g~leDYA~~i~gll~lye~t~d~~yL~  491 (667)
T COG1331         416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGE----AAVAGLLEDYAFLILGLLALYEATGDLAYLE  491 (667)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCc----ccccccchhHHHHHHHHHHHHHhhCcHHHHH
Confidence            4566666664   34568999999999987544321   122111    0011111111335778889999999999999


Q ss_pred             HHHHHHHHHHH----hC-------------CC-----CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          126 AAVDAGEVVWK----RG-------------LL-----KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       126 ~~~~~~~~~~~----~~-------------~~-----~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      .|++..+.++.    ..             ..     .+...=.|++=.+..|+.+..+|++.+|.+.|.+.++..-...
T Consensus       492 ~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~  571 (667)
T COG1331         492 KAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA  571 (667)
T ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence            99887766532    11             00     1345567789999999999999999999999998866654443

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid

Probab=95.45  E-value=1.4  Score=38.85  Aligned_cols=169  Identities=10%  Similarity=0.057  Sum_probs=95.9

Q ss_pred             hHHHHHHHHHHHhcHHhhhcCC-CCCceeec--Cc-ccccc-ccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhc
Q 027089            9 AQMRAVVDEIIKAGRRLANRGR-CPLMYEWH--GK-KYWGA-AHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNR   80 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-~~~G~-aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~   80 (228)
                      ++..+.++++.++..-    .. ..+.+.+.  ++ ...+. ....+=++.+|+.++..   +..++.++++++++.+..
T Consensus        76 ~~A~~~~~fl~~~~~d----~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~  151 (384)
T cd00249          76 EAAEHGLEYLDRHGRD----PDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRF  151 (384)
T ss_pred             HHHHHHHHHHHHhCcC----CCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            3446666666665221    11 23334432  22 12233 33445566666677654   345788999999998754


Q ss_pred             C-CCCCCC-CCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-----------C------
Q 027089           81 F-PSGNYP-SSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-----------K------  141 (228)
Q Consensus        81 ~-~~g~w~-~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~------  141 (228)
                      . +.|.+. ....+ .....+ .++..=.+-+++.+...++++++.+.+++.++.+.+.-..           .      
T Consensus       152 ~~~~g~~~~~~~~~-~~~~~~-~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~  229 (384)
T cd00249         152 WEDHPGAFDEADPG-TPPYRG-SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYN  229 (384)
T ss_pred             ccCCCcccCCCCCC-CCCCCC-CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCc
Confidence            3 334332 21111 111112 1111112346777888899999999998877665442100           0      


Q ss_pred             ----CCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          142 ----RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       142 ----~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                          ....-.+.+=.+..++.+++.+++++|++.|+++.+.+.+..
T Consensus       230 ~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~  275 (384)
T cd00249         230 GDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALG  275 (384)
T ss_pred             CcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence                011122233356778889999999999999999988887765

Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function

Probab=95.36  E-value=0.15  Score=47.54  Aligned_cols=123  Identities=17%  Similarity=0.128  Sum_probs=77.4

Q ss_pred             HHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHH
Q 027089           52 IMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAV  128 (228)
Q Consensus        52 i~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~  128 (228)
                      ++.+|...+..   ...++.+.+..+|+.+ ...  .+.     ..+....|+-|-.||..+++.+++.++|+++++.|+
T Consensus       130 ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~-~~~--~~~-----~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~  201 (520)
T PF07944_consen  130 LLEGLIDYYEATGNERALDVATKLADWVYR-RLS--RLG-----PEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAE  201 (520)
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-Hhc--cCC-----HHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHH
Confidence            44455555543   2236778888888733 110  011     011123577799999999999999999999999998


Q ss_pred             HHHHHHHHhC---------C---CCCCccccCh--hhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089          129 DAGEVVWKRG---------L---LKRVGICHGI--SGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR  182 (228)
Q Consensus       129 ~~~~~~~~~~---------~---~~~~~lCHG~--aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~  182 (228)
                      ...+.-....         .   ..+....|..  .=...-...+|+.|+|++|++.++++.+.+...
T Consensus       202 ~f~~~~~~~~~~~~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~  269 (520)
T PF07944_consen  202 YFVDQRGFDPYDLAYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRH  269 (520)
T ss_pred             HHHHHhCCCCCchhhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            8765422111         0   0134445553  111123356789999999999999988877665

One member of this family is annotated as a possible arabinosidase, but no references were found to back this.

>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.64  E-value=0.66  Score=42.70  Aligned_cols=170  Identities=16%  Similarity=0.129  Sum_probs=101.5

Q ss_pred             CCCChhHHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCC
Q 027089            4 DTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPS   83 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~   83 (228)
                      |++=+-+.+...+.+.+.+..-..+. .-..|....-....+.|=++-+++.|..-.. +.-.+++-++++.+-+.+-++
T Consensus        28 d~v~~~~~d~Lldr~~ea~~l~~~d~-~r~g~~~q~f~dsdlgkwlea~A~~l~~~~d-p~Lekr~D~vi~~~a~~Qded  105 (589)
T COG3533          28 DVVVSLQADRLLDRCHEAAMLPAKDP-FRGGWETQMFWDSDLGKWLEAAAYSLANKGD-PELEKRIDEVVEELARAQDED  105 (589)
T ss_pred             eeEEecCHHHHHhHhhhccCCCccCc-ccccceeeeeccccHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhhccC
Confidence            44445556777777777763332221 0023331112345788888888887665321 222345666676665545556


Q ss_pred             C---CCCCCC-CCCCCcccccccCc--hHHHH-HHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC--C-CCccccChhhHH
Q 027089           84 G---NYPSSE-GSESDRLVHWCHGA--PGVTL-TLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL--K-RVGICHGISGNT  153 (228)
Q Consensus        84 g---~w~~~~-~~~~~~~~~WC~G~--~Gi~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~lCHG~aG~~  153 (228)
                      |   .|.... +++......|||=.  +|-+. +.+..++.++..++.+.+.+.++.+.+. +.  . -.-.-+|-.++-
T Consensus       106 GYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tv-fgp~~~q~~g~~gH~eie  184 (589)
T COG3533         106 GYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATV-FGPEEDQVPGYCGHPEIE  184 (589)
T ss_pred             CcccceeeccCchhhhhccccchHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhh-cCccccccccccCCCchh
Confidence            5   265432 22233456677651  22222 2344556688889999888888876542 22  1 133444778899


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHH
Q 027089          154 YVFLSLYRLTGNVEYLYRAKAFA  176 (228)
Q Consensus       154 ~~ll~l~~~~~~~~~~~~a~~~~  176 (228)
                      .++.++|+.|++++|++.|+.+.
T Consensus       185 lAl~~Ly~~Tg~~rYL~LA~~Fi  207 (589)
T COG3533         185 LALAELYRLTGDQRYLDLARRFI  207 (589)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHH
Confidence            99999999999999999998874

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=0.82  Score=43.58  Aligned_cols=76  Identities=25%  Similarity=0.307  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCCCccccC--------------hhhHHHHHHHHHHHhCCHHHHHHH
Q 027089          107 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHG--------------ISGNTYVFLSLYRLTGNVEYLYRA  172 (228)
Q Consensus       107 i~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG--------------~aG~~~~ll~l~~~~~~~~~~~~a  172 (228)
                      ++.++..++.+++++++.+.|+++.+.+.++-.. + -+||.              .+=.+..++.+|+++.+.+|++.|
T Consensus       416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~-~-rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A  493 (667)
T COG1331         416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYV-D-RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKA  493 (667)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc-c-chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHH
Confidence            5667888899999999999999999887665322 2 34443              233567889999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027089          173 KAFACFLYDRAQ  184 (228)
Q Consensus       173 ~~~~~~i~~~~~  184 (228)
                      .++.+.++....
T Consensus       494 ~~L~~~~i~~f~  505 (667)
T COG1331         494 IELADEAIADFW  505 (667)
T ss_pred             HHHHHHHHHHhc
Confidence            999888877754

>PLN02993 lupeol synthase

Probab=92.93  E-value=0.77  Score=44.73  Aligned_cols=118  Identities=8%  Similarity=-0.043  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 027089           10 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS   89 (228)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~~   89 (228)
                      -|++.+++|.+.+...++|         .+.-.+.+..|.+-.+.+|..........+.++++++|+.+.+..+|.|-.+
T Consensus       591 ~i~rAv~yL~~~Q~~DGSW---------~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs  661 (763)
T PLN02993        591 SIEKAVQFIESKQTPDGSW---------YGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGES  661 (763)
T ss_pred             HHHHHHHHHHHhcCCCCCc---------ccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcC
Confidence            4566666666665555433         2333345666999999999877665444567999999999878889999653


Q ss_pred             CCCCCCccccccc--Cc----hHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC
Q 027089           90 EGSESDRLVHWCH--GA----PGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG  138 (228)
Q Consensus        90 ~~~~~~~~~~WC~--G~----~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (228)
                      -..-  ....|..  |.    ...++|++.+...-..++..+.+.++++.++++.
T Consensus       662 ~~S~--~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q  714 (763)
T PLN02993        662 YLSC--PEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQ  714 (763)
T ss_pred             cCcC--CCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Confidence            2110  0011221  11    5677777776655222232345667777776643

>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3

Probab=92.17  E-value=0.85  Score=40.67  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=73.3

Q ss_pred             HHHHHHHHcccC---CC-----chHHHHHHHHHHHHHhcC-C---CCC--CCCCCCCC-CCcccccccCchHHHHHHHHH
Q 027089           50 AGIMHVLMDMEL---KP-----DEVEDVKGTLRYMIKNRF-P---SGN--YPSSEGSE-SDRLVHWCHGAPGVTLTLAKA  114 (228)
Q Consensus        50 aGi~~~L~~~~~---~~-----~~~~~~~~~l~~l~~~~~-~---~g~--w~~~~~~~-~~~~~~WC~G~~Gi~~al~~~  114 (228)
                      +=++.++.++++   ..     .+++.++++.+++.. .. +   .|.  |.....+. .+....-.+|..-  ...+++
T Consensus        91 aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~--~laarL  167 (370)
T PF03663_consen   91 AWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAA--QLAARL  167 (370)
T ss_dssp             HHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB-SGG-GS-BEEET----TEEEEEEHHHHHHHH--HHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hcCCccCCCCccccccccCCCCCcccccchHHHH--HHHHHH
Confidence            335666677764   23     568899999998874 44 2   133  55321111 1122233343333  334456


Q ss_pred             HHhhCcHHHHHHHHHHHHHHHHhCCC--CC---------CccccC--------hhhH-HHHHHHHHHHhCCH-HHHHHHH
Q 027089          115 AEVFGEKEFLQAAVDAGEVVWKRGLL--KR---------VGICHG--------ISGN-TYVFLSLYRLTGNV-EYLYRAK  173 (228)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~lCHG--------~aG~-~~~ll~l~~~~~~~-~~~~~a~  173 (228)
                      +++++++.+++.|++..+.+.+..+.  ++         ..=|.-        +.|+ +..+..+|+.|+++ .|+++|.
T Consensus       168 ~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~  247 (370)
T PF03663_consen  168 YRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAE  247 (370)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHH
T ss_pred             HHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            66789999999999987665542111  00         111211        2333 46778899999877 9999999


Q ss_pred             HHHHHHHHHH
Q 027089          174 AFACFLYDRA  183 (228)
Q Consensus       174 ~~~~~i~~~~  183 (228)
                      ++++..++..
T Consensus       248 ~la~~~~~~~  257 (370)
T PF03663_consen  248 KLADAAINHF  257 (370)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988887773

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.

>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3

Probab=91.43  E-value=1.8  Score=38.57  Aligned_cols=72  Identities=28%  Similarity=0.410  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhhCcH-----HHHHHHHHHHHHHHHhCCCCCCccccC--------------------hhhHHHHHHHHHH
Q 027089          107 VTLTLAKAAEVFGEK-----EFLQAAVDAGEVVWKRGLLKRVGICHG--------------------ISGNTYVFLSLYR  161 (228)
Q Consensus       107 i~~al~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lCHG--------------------~aG~~~~ll~l~~  161 (228)
                      .+++++.+++.++++     ++++.++...+.+.. +.  +...|.|                    +.-.+.+..++|+
T Consensus        93 ~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~w--d~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~  169 (370)
T PF03663_consen   93 WALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GW--DDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYR  169 (370)
T ss_dssp             HHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB---SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hc--CCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHH
Confidence            788999999999999     999999998887763 22  1223433                    2345667778999


Q ss_pred             HhCCHHHHHHHHHHHHHHHH
Q 027089          162 LTGNVEYLYRAKAFACFLYD  181 (228)
Q Consensus       162 ~~~~~~~~~~a~~~~~~i~~  181 (228)
                      +|+++.|++.|+++.+.+.+
T Consensus       170 ~t~~~~Yl~~A~~~~~W~~~  189 (370)
T PF03663_consen  170 ITGDQTYLDWAKKIYDWMRD  189 (370)
T ss_dssp             HH--HHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHhhc
Confidence            99999999999999888877

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.

>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5

Probab=91.30  E-value=0.35  Score=42.39  Aligned_cols=131  Identities=21%  Similarity=0.180  Sum_probs=78.1

Q ss_pred             HHHHHHcccC--CCchHHHHHHHHHHHHHhcC--CCCCCCCCCCCCCC-cccccccCchHHHHHHHHHHHhhCcHHHHHH
Q 027089           52 IMHVLMDMEL--KPDEVEDVKGTLRYMIKNRF--PSGNYPSSEGSESD-RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQA  126 (228)
Q Consensus        52 i~~~L~~~~~--~~~~~~~~~~~l~~l~~~~~--~~g~w~~~~~~~~~-~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~  126 (228)
                      .+++++.++.  .++.++.+++.++|+.+...  ++|.|........+ ....=++..+=+++++.. ...++++++.+.
T Consensus        26 ~~~~fa~a~~~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~  104 (346)
T PF07221_consen   26 QLYTFARAYRLGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE-ARATGDPEALEL  104 (346)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH-HHCTT-TTHHHH
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH-HHHhCChhHHHH
Confidence            4455555543  34568899999999997544  34666543211111 111123333444566666 566888999999


Q ss_pred             HHHHHHHHHHhC-------CC----CCCccccChh---hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          127 AVDAGEVVWKRG-------LL----KRVGICHGIS---GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       127 ~~~~~~~~~~~~-------~~----~~~~lCHG~a---G~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      |+++++.+.+.-       +.    .+.+.-.+..   =.+++++.++++++++.|++++.++++.+++..
T Consensus       105 A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f  175 (346)
T PF07221_consen  105 AEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRF  175 (346)
T ss_dssp             HHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            998887775431       00    1112222222   235677889999999999999999888877443

3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []

Probab=90.69  E-value=7.5  Score=33.88  Aligned_cols=146  Identities=18%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             CchHHHHHHHHHHHHHhcC--CCCC-CCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh--
Q 027089           63 PDEVEDVKGTLRYMIKNRF--PSGN-YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR--  137 (228)
Q Consensus        63 ~~~~~~~~~~l~~l~~~~~--~~g~-w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--  137 (228)
                      +++.+.+.++.+++.+...  .+|. |..    ......-|+.+.--..-.+..+++.++|+++.+++.+-++...+.  
T Consensus        86 ~~y~~~~~~~a~~~l~~~~~~~~G~~~~~----~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~  161 (336)
T PF07470_consen   86 EKYKDAAIQAADWLLARRPRTSDGGFWHN----RPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLY  161 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTSCBECTGCBECT----TTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCccccC----CCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcc
Confidence            4467888889987776444  2454 331    123455799988778888888999999999999887766554432  


Q ss_pred             ----CCC---------C---CCccccChhhHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHhhhhhcCC----C
Q 027089          138 ----GLL---------K---RVGICHGISGNTYVFLSLYRLTGN-----VEYLYRAKAFACFLYDRAQKLIAEGK----M  192 (228)
Q Consensus       138 ----~~~---------~---~~~lCHG~aG~~~~ll~l~~~~~~-----~~~~~~a~~~~~~i~~~~~~~~~~g~----~  192 (228)
                          ++.         .   +.++.-|.+=.+.-+..+++.+++     +.+++.++++++.+.....   ++|-    +
T Consensus       162 d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~---~~G~w~~~~  238 (336)
T PF07470_consen  162 DPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD---EDGLWYQDL  238 (336)
T ss_dssp             -TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST---TTSBEBSBT
T ss_pred             CCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC---CCCCcceec
Confidence                110         0   112444444344444455555543     4445555555444332211   1221    1


Q ss_pred             CCCC-CccccccchHHHHHHHHHc
Q 027089          193 HGGD-RPYSLFEGIGGMTHLFLDM  215 (228)
Q Consensus       193 ~~~~-~~~gl~~G~aGi~~~Ll~l  215 (228)
                      ..+. .++-=-.|+|.+++.|++.
T Consensus       239 ~~~~~~~~~etSatA~~a~~l~~g  262 (336)
T PF07470_consen  239 DDPDPGNYRETSATAMFAYGLLRG  262 (336)
T ss_dssp             TTTTTTS-BEHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccHHHHHHHHHHHHHH
Confidence            1111 2333356788888888763

; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....

>PLN03012 Camelliol C synthase

Probab=89.78  E-value=2.8  Score=40.92  Aligned_cols=117  Identities=10%  Similarity=0.013  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 027089           10 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS   89 (228)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~~   89 (228)
                      -|.+.++.|.+.+...++      ++   +.-.+.+..|.+-++.+|..........+.++++++|+.+.|..+|.|..+
T Consensus       591 ~i~rAv~~L~~~Q~~DGs------W~---G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs  661 (759)
T PLN03012        591 FIKKAAEYIENIQMLDGS------WY---GNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGES  661 (759)
T ss_pred             HHHHHHHHHHHhcCCCCC------Cc---ccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCC
Confidence            345555555555544432      22   333334556899999998877664333568999999999988889999764


Q ss_pred             CCCCCCccccccc--Cc----hHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Q 027089           90 EGSESDRLVHWCH--GA----PGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR  137 (228)
Q Consensus        90 ~~~~~~~~~~WC~--G~----~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (228)
                      -..-  ....|..  |.    ...++|++.+...-.-++--..+.++++.++++
T Consensus       662 ~~Sc--~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~  713 (759)
T PLN03012        662 YLSC--PKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINS  713 (759)
T ss_pred             CCCC--CCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHc
Confidence            3210  0111222  22    566777776655421111012456666777654

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=89.56  E-value=13  Score=32.18  Aligned_cols=118  Identities=9%  Similarity=-0.059  Sum_probs=74.2

Q ss_pred             CchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC---------------CCCccccC-hhhHHHHHHHHHHHhCC-
Q 027089          103 GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL---------------KRVGICHG-ISGNTYVFLSLYRLTGN-  165 (228)
Q Consensus       103 G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lCHG-~aG~~~~ll~l~~~~~~-  165 (228)
                      ++.--+..|+.+++.++++.+++.+.++++.++.....               ...++|-. ...++.+|..+++..++ 
T Consensus        45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~  124 (290)
T TIGR02474        45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF  124 (290)
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence            34556667778888899999999999999999764221               11333322 56777777777764331 


Q ss_pred             --------HHHHHHHHHHHHHHHHHHhhh-hhcC---------CC-C---CCCCccccccc-hHHHHHHHHHccCCCC
Q 027089          166 --------VEYLYRAKAFACFLYDRAQKL-IAEG---------KM-H---GGDRPYSLFEG-IGGMTHLFLDMIEPSE  220 (228)
Q Consensus       166 --------~~~~~~a~~~~~~i~~~~~~~-~~~g---------~~-~---~~~~~~gl~~G-~aGi~~~Ll~l~~~~~  220 (228)
                              ++....+.+..++|+...... .+.+         .+ |   ...+.+|+..+ ++||..+|+++.+|+.
T Consensus       125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~  202 (290)
T TIGR02474       125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSA  202 (290)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCH
Confidence                    345555556666666554322 0110         11 1   12346888888 6789999998887763

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []

Probab=89.00  E-value=4.6  Score=35.22  Aligned_cols=72  Identities=21%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CC-----------CccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089          111 LAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KR-----------VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF  178 (228)
Q Consensus       111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~  178 (228)
                      ++.+++.++|+++++.+.++++.++++... .+           .+++-+..=+..+|..+++.++|++|.+.|.+-+..
T Consensus        76 ~~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~  155 (336)
T PF07470_consen   76 LLDLYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRL  155 (336)
T ss_dssp             HHHHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence            355888899999999999999966654332 12           335555555889999999999999999988776555


Q ss_pred             HHHH
Q 027089          179 LYDR  182 (228)
Q Consensus       179 i~~~  182 (228)
                      ..+.
T Consensus       156 ~~~~  159 (336)
T PF07470_consen  156 TRKY  159 (336)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=88.64  E-value=5.7  Score=34.27  Aligned_cols=117  Identities=9%  Similarity=0.032  Sum_probs=69.5

Q ss_pred             CchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCC---------------CccccC-hhhHHHHHHHHHHHhCCH
Q 027089          103 GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR---------------VGICHG-ISGNTYVFLSLYRLTGNV  166 (228)
Q Consensus       103 G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~lCHG-~aG~~~~ll~l~~~~~~~  166 (228)
                      .+.--+..|+.++..++|+++++.+.++++.+++..+.+.               .++=-+ ..+++.+|..+++..++-
T Consensus        40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~  119 (289)
T PF09492_consen   40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF  119 (289)
T ss_dssp             TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred             hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence            3456677778888889999999999999999987643210               111112 457777777777766644


Q ss_pred             ---------HHHHHHHHHHHHHHHHHhhh-h----hc-----CCC-C---CCCCccccccc-hHHHHHHHHHccCCC
Q 027089          167 ---------EYLYRAKAFACFLYDRAQKL-I----AE-----GKM-H---GGDRPYSLFEG-IGGMTHLFLDMIEPS  219 (228)
Q Consensus       167 ---------~~~~~a~~~~~~i~~~~~~~-~----~~-----g~~-~---~~~~~~gl~~G-~aGi~~~Ll~l~~~~  219 (228)
                               +..+.+.+..++|+...... .    ++     -.+ |   ...+.+|++.+ ++||..+|+++.+|+
T Consensus       120 ~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps  196 (289)
T PF09492_consen  120 AFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS  196 (289)
T ss_dssp             TTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC
Confidence                     44444445555555443311 0    10     011 1   13457889888 789999999999886

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]

Probab=88.55  E-value=1.6  Score=38.36  Aligned_cols=73  Identities=27%  Similarity=0.311  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC-CCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          108 TLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG-LLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       108 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      .+...++++.++|+++++.+..-.+..+..+ +. ..++=|=.+  ..+|+.+++.|++++|++.+.++++.+++..
T Consensus        42 lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~~-~~~id~i~~--g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~  115 (357)
T COG4225          42 LYGVARAYEATGDAEYLDYLKTWFDEQIDEGGLP-PRNIDHIAA--GLTLLPLYEQTGDPRYLEAAIKLASWLVHEP  115 (357)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCC-ccchhhhcc--CceeeehhhhhCCHHHHHHHHHHHHHHhhCc
Confidence            4556677888999999999988777666655 42 112222222  3467788999999999999999999988775

>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]

Probab=85.59  E-value=7.5  Score=34.24  Aligned_cols=69  Identities=19%  Similarity=0.134  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC------CC-----CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHH
Q 027089          108 TLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG------LL-----KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFA  176 (228)
Q Consensus       108 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~  176 (228)
                      .+.++-+++.++|+++++.+++..+.+....      +.     ..-.||-|..=-..++.++.+.+++++|.+.+..-+
T Consensus        85 g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF  164 (357)
T COG4225          85 GLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQF  164 (357)
T ss_pred             CceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3456778889999999999998887765432      11     125689998888889999999999999999876543

>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]

Probab=83.96  E-value=8.4  Score=34.02  Aligned_cols=84  Identities=25%  Similarity=0.354  Sum_probs=61.7

Q ss_pred             ccCchHH-HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC-----C-------------CCCCccccChhhHHHHHHHHHH
Q 027089          101 CHGAPGV-TLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG-----L-------------LKRVGICHGISGNTYVFLSLYR  161 (228)
Q Consensus       101 C~G~~Gi-~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------~~~~~lCHG~aG~~~~ll~l~~  161 (228)
                      |.--+|. ++-+..+...++++-+.+.+.++++.+|++.     +             .++.++--|.-...+.++.+|-
T Consensus       183 ctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayi  262 (587)
T KOG2430|consen  183 CTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYI  262 (587)
T ss_pred             hhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhh
Confidence            4444444 3445666777899999999999999998742     1             0245666777777888999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHHh
Q 027089          162 LTGNVEYLYRAKAFACFLYDRAQ  184 (228)
Q Consensus       162 ~~~~~~~~~~a~~~~~~i~~~~~  184 (228)
                      ..+|+.|+++-.+--+.+..+..
T Consensus       263 llgddsfldrfn~hydai~ryi~  285 (587)
T KOG2430|consen  263 LLGDDSFLDRFNKHYDAIKRYIN  285 (587)
T ss_pred             eeccHHHHHHHHHHHHHHHHHhc
Confidence            99999999998877666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
3e6u_A	411	Crystal Structure Of Human Lancl1 Length = 411		7e-50

>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411

Iteration: 1
 Score =  193 bits (490), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
            G + I  + ++ + + I+ +G  LA +     + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 181 FGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL 240
Query: 57  MDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
           M   L+  + +    VK ++ Y+ + +FPSGNYP   G   D LVHWCHGAPGV   L +
Sbjct: 241 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ 300
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A +VF E+++L  A    +V+W+ GLLK+  G+CHG +GN Y FL+LY LT +++YLYRA
Sbjct: 301 AYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRA 360
Query: 173 KAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             FA  C  Y        E      D P+SLFEG+ G  +   D++ P++ARFPA+EL
Sbjct: 361 CKFAEWCLEY-------GEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 411

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
3e6u_A	411	LANC-like protein 1; alpha barrel, cytoplasm, sign	1e-72
2g0d_A	409	Nisin biosynthesis protein NISC; alpha toroid, alp	2e-43
2g0d_A	409	Nisin biosynthesis protein NISC; alpha toroid, alp	8e-05

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411

 Score =  225 bits (575), Expect = 1e-72
 Identities = 99/236 (41%), Positives = 144/236 (61%), Gaps = 13/236 (5%)

Query: 1   MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
            G + I  + ++ + + I+ +G  LA +     + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 181 FGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL 240

Query: 57  MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
           M   L+  +      VK ++ Y+ + +FPSGNYP   G   D LVHWCHGAPGV   L +
Sbjct: 241 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ 300

Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
           A +VF E+++L  A    +V+W+ GLLK+  G+CHG +GN Y FL+LY LT +++YLYRA
Sbjct: 301 AYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRA 360

Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
             FA +  +       E      D P+SLFEG+ G  +   D++ P++ARFPA+EL
Sbjct: 361 CKFAEWCLEY-----GEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 411

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409

 Score =  149 bits (378), Expect = 2e-43
 Identities = 39/246 (15%), Positives = 67/246 (27%), Gaps = 33/246 (13%)

Query: 2   GKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-------WHGKKYWGAAHGLAGIMH 54
             D +    +  + +   +    ++   +               G    G AHGLAG+  
Sbjct: 154 QYDDLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGC 213

Query: 55  VLMDMELKPDEVED----VKGTLRYMIKNRFPSGNYP--------------SSEGSESDR 96
           +L    +K    E     ++  +    K                             S  
Sbjct: 214 ILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFI 273

Query: 97  LVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KRVGICHGISGNTYV 155
              WC+G PG++L             F+  A    E   +R L      ICHG SG   +
Sbjct: 274 RDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEI 333

Query: 156 FLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDM 215
                RL    ++    + F        ++       +G +      EGI G   +    
Sbjct: 334 CSLFKRLLNTKKFDSYMEEFNVNSEQILEE-------YGDESGTGFLEGISGCILVLSKF 386

Query: 216 IEPSEA 221
                 
Sbjct: 387 EYSINF 392

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409

 Score = 42.1 bits (98), Expect = 8e-05
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 6/116 (5%)

Query: 102 HGAPGVTLTLAKAAEVFGEKEFLQAA---VDAGEVVWKRGLLKRVGICHGISGNTYVFLS 158
            G PG+ L LA+       K + +     ++          L    +  G +G     L 
Sbjct: 35  TGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGAAGIALSILH 94

Query: 159 LYRLTGNV-EYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFL 213
           L          L     +  +      +      +   D  Y + EG+ G+    L
Sbjct: 95  LREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPD--YDVIEGLSGILSYLL 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
3e6u_A	411	LANC-like protein 1; alpha barrel, cytoplasm, sign	100.0
2g0d_A	409	Nisin biosynthesis protein NISC; alpha toroid, alp	99.97
2g0d_A	409	Nisin biosynthesis protein NISC; alpha toroid, alp	99.77
3e6u_A	411	LANC-like protein 1; alpha barrel, cytoplasm, sign	99.74
3pmm_A	382	Putative cytoplasmic protein; structural genomics,	97.43
2ahf_A	377	Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba	96.91
2ahf_A	377	Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba	96.82
2zzr_A	397	Unsaturated glucuronyl hydrolase; alpha barrel; 1.	96.69
3pmm_A	382	Putative cytoplasmic protein; structural genomics,	96.61
2gz6_A	388	N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C	96.55
3gt5_A	402	N-acetylglucosamine 2-epimerase; structural genomi	96.45
2zzr_A	397	Unsaturated glucuronyl hydrolase; alpha barrel; 1.	96.02
3k7x_A	349	LIN0763 protein; Q92DQ0, LKR23, NESG, structural g	95.93
3k7x_A	349	LIN0763 protein; Q92DQ0, LKR23, NESG, structural g	95.88
1nc5_A	373	Hypothetical protein YTER; structural genomics, he	95.3
1nc5_A	373	Hypothetical protein YTER; structural genomics, he	95.12
1fp3_A	402	N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr	94.68
2gz6_A	388	N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C	94.49
3k11_A	445	Putative glycosyl hydrolase; structural genomics,	93.23
2zbl_A	421	Putative isomerase; N-acyl-D-glucosamine 2-epimera	93.08
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	92.86
3k11_A	445	Putative glycosyl hydrolase; structural genomics,	92.47
2zbl_A	421	Putative isomerase; N-acyl-D-glucosamine 2-epimera	91.8
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	91.11
1fp3_A	402	N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr	89.7
3h7l_A	586	Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru	88.95
3gt5_A	402	N-acetylglucosamine 2-epimerase; structural genomi	85.78

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*

Probab=100.00  E-value=4.3e-40  Score=294.10  Aligned_cols=222  Identities=44%  Similarity=0.838  Sum_probs=190.3

Q ss_pred             CCCCCChhHHHHHHHHHHHhcHHhhhc----CCCCCceeecCccccccccchHHHHHHHHcccCCCc---hHHHHHHHHH
Q 027089            2 GKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPD---EVEDVKGTLR   74 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~---~~~~~~~~l~   74 (228)
                      +.+.++.+.+.++++.|++.++..+..    ...|++|.|.++.++|++||++||+++|++++...+   ..+.++++++
T Consensus       182 ~~~~~~~~~i~~i~~~ii~~g~~~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~~~~~~~i~~~l~  261 (411)
T 3e6u_A          182 GVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVD  261 (411)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHHHHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCHHHHHHTHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeecCccCCcccccHHHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence            455677777899999999998766433    257899999999999999999999999999986543   3678999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCC-CCCCccccChhhHH
Q 027089           75 YMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL-LKRVGICHGISGNT  153 (228)
Q Consensus        75 ~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lCHG~aG~~  153 (228)
                      ++.+.++++|+||+.+.++.+...+||||+|||+++++.+.+.++++++.+.++++++.+|+.++ ..++++|||.+|++
T Consensus       262 ~l~~~~~~~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~lChG~aG~~  341 (411)
T 3e6u_A          262 YVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNA  341 (411)
T ss_dssp             HHHHTCCTTSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCSBTTCSCSTTSHHHHH
T ss_pred             HHHHhhccCCCCCCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCccCCCCceecChHHHH
Confidence            99987667799998765555667899999999999999999999999999999999999999886 46799999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCCCC
Q 027089          154 YVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL  228 (228)
Q Consensus       154 ~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~~~~  228 (228)
                      ++|+++++.|++++|+++|.++++.++++..     +....+..++|||+|.|||+++|+++.+|++.+||+|||
T Consensus       342 ~~ll~~~~~t~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~sL~~G~aGi~~~Ll~l~~p~~~~fp~~~~  411 (411)
T 3e6u_A          342 YAFLTLYNLTQDMKYLYRACKFAEWCLEYGE-----HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL  411 (411)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHTTTTS-----SCCCCCSSTTSTTTSHHHHHHHHHHHTSGGGCCCTTTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-----ccCCCCCCCChhhccHHHHHHHHHHHcCCCcccCCCCCC
Confidence            9999999999999999999998887765421     112223457899999999999999999999999999997

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A

Probab=99.97  E-value=9.2e-30  Score=226.75  Aligned_cols=178  Identities=21%  Similarity=0.255  Sum_probs=143.0

Q ss_pred             CccccccccchHHHHHHHHcccCC----CchHHHHHHHHHHHHHhcC--CCCC-CCC-CC----------CCCCCccccc
Q 027089           39 GKKYWGAAHGLAGIMHVLMDMELK----PDEVEDVKGTLRYMIKNRF--PSGN-YPS-SE----------GSESDRLVHW  100 (228)
Q Consensus        39 ~~~~~G~aHG~aGi~~~L~~~~~~----~~~~~~~~~~l~~l~~~~~--~~g~-w~~-~~----------~~~~~~~~~W  100 (228)
                      +..++|++||++||+++|..++..    ++..+.++++++++.+.++  ++|+ ||+ ..          .+..+.+.+|
T Consensus       198 ~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~~~~~~W  277 (409)
T 2g0d_A          198 GCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAW  277 (409)
T ss_dssp             CBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCS
T ss_pred             CCccCCchhhHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCCCCCCcC
Confidence            347899999999999999888642    3457889999999987666  4677 987 11          1123457899


Q ss_pred             ccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh-CCCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027089          101 CHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR-GLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL  179 (228)
Q Consensus       101 C~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i  179 (228)
                      |||+|||+++++.+++.++|+++.+.++++++.++++ ....++++|||.+|++++|+.+++.+++++|++++.++. ..
T Consensus       278 ChG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~~~LCHG~aG~~~~l~~l~~~~~~~~~~~~a~~~~-~~  356 (409)
T 2g0d_A          278 CYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFN-VN  356 (409)
T ss_dssp             SSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCSCCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHH-HT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcC-Cc
Confidence            9999999999999999999999999999999999886 455789999999999999999999999999998887731 11


Q ss_pred             HHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCC-CCC
Q 027089          180 YDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE-ARF  223 (228)
Q Consensus       180 ~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~-~~~  223 (228)
                       .. ..   .+ .+....++|||+|.|||+++|+++.+|.+ +.|
T Consensus       357 -~~-~~---~g-~~~~~~~~gL~~G~AGi~~~Ll~l~~p~~~~~W  395 (409)
T 2g0d_A          357 -SE-QI---LE-EYGDESGTGFLEGISGCILVLSKFEYSINFTYW  395 (409)
T ss_dssp             -HH-HH---HH-SCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCG
T ss_pred             -ch-hh---cc-ccCCCCCCceeCCHHHHHHHHHHhcCCCCCCCh
Confidence             11 10   11 12334678999999999999999999988 654

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A

Probab=99.77  E-value=2e-17  Score=147.08  Aligned_cols=167  Identities=17%  Similarity=0.096  Sum_probs=126.3

Q ss_pred             cccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCC---CCCCCCCCC-----------CCCcccccccCchH
Q 027089           41 KYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPS---GNYPSSEGS-----------ESDRLVHWCHGAPG  106 (228)
Q Consensus        41 ~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~---g~w~~~~~~-----------~~~~~~~WC~G~~G  106 (228)
                      ...++.||.||++++|..++ .+...+.++++++++.+...+.   ..|......           ......+||||.+|
T Consensus       132 ~~~dl~~G~aGi~~~Ll~l~-~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aG  210 (409)
T 2g0d_A          132 PDYDVIEGLSGILSYLLLIN-DEQYDDLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAG  210 (409)
T ss_dssp             HHHSSSSSHHHHHHHHTTCC-CGGGHHHHHHHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHH
T ss_pred             ccccHhcCHHHHHHHHHHcc-CchhHHHHHHHHHHHHHHHhcCCCCCceeecCCccccchhhhcCCCCCccCCchhhHHH
Confidence            45699999999999999886 3445677888888888643311   136543211           01246799999999


Q ss_pred             HHHHHHHHHHhh-CcHHHHHHHHHHHHHHHHhCC---------------------------CCCCccccChhhHHHHHHH
Q 027089          107 VTLTLAKAAEVF-GEKEFLQAAVDAGEVVWKRGL---------------------------LKRVGICHGISGNTYVFLS  158 (228)
Q Consensus       107 i~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~lCHG~aG~~~~ll~  158 (228)
                      |++.+..+.... .++++.+.++++++.+.+..+                           ...++||||.+|++.+++.
T Consensus       211 i~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~  290 (409)
T 2g0d_A          211 VGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLY  290 (409)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCCCCCCcCCCCCHHHHHHHHH
Confidence            998888877653 478999999988887633110                           0247899999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCC
Q 027089          159 LYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP  218 (228)
Q Consensus       159 l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~  218 (228)
                      +++.++|++|++.+.+.++.+.++.          ....+++||||.+|++++++++++.
T Consensus       291 ~~~~~~d~~~~~~a~~~~~~~~~~~----------~~~~~~~LCHG~aG~~~~l~~l~~~  340 (409)
T 2g0d_A          291 GGLALDNDYFVDKAEKILESAMQRK----------LGIDSYMICHGYSGLIEICSLFKRL  340 (409)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHC----------TTCCSCCTTTSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhc----------cCCCCCCCCChHHHHHHHHHHHHHH
Confidence            9999999999999988877776551          1234899999999999999998764

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*

Probab=99.74  E-value=8.6e-18  Score=149.85  Aligned_cols=165  Identities=17%  Similarity=0.222  Sum_probs=117.8

Q ss_pred             cccccchHHHHHHHHcccCC---CchH-HHHHHHHHHHHHhc-----CCCCCCCCCC--CCCCCcccccccCchHHHHHH
Q 027089           43 WGAAHGLAGIMHVLMDMELK---PDEV-EDVKGTLRYMIKNR-----FPSGNYPSSE--GSESDRLVHWCHGAPGVTLTL  111 (228)
Q Consensus        43 ~G~aHG~aGi~~~L~~~~~~---~~~~-~~~~~~l~~l~~~~-----~~~g~w~~~~--~~~~~~~~~WC~G~~Gi~~al  111 (228)
                      ..+.||.||++++|..+++.   .... ..+.++++.+.+..     .....|+...  .-....+.+||||.+||++++
T Consensus       161 ~dll~G~AG~l~aLl~L~~~~~~~~~~~~~i~~i~~~ii~~g~~~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~L  240 (411)
T 3e6u_A          161 NEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL  240 (411)
T ss_dssp             SSTTTSHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHH
T ss_pred             hhhhcCcHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeecCccCCcccccHHHHHHHH
Confidence            58899999999999999753   1222 22333443333210     0010011100  001244689999999999999


Q ss_pred             HHHHHhhCcHHHHHHHHHHHHHHHHhCCC----C---------CCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089          112 AKAAEVFGEKEFLQAAVDAGEVVWKRGLL----K---------RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF  178 (228)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~  178 (228)
                      +.+.+.++++++.+.++++++.+.+....    .         .++||||.+|++.+++.+++.++++++++.|.+..+.
T Consensus       241 l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~  320 (411)
T 3e6u_A          241 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADV  320 (411)
T ss_dssp             TCGGGCCCHHHHHHTHHHHHHHHHHTCCTTSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99998899999999999999888664321    0         1479999999999999999999999999998887665


Q ss_pred             HHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccC
Q 027089          179 LYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE  217 (228)
Q Consensus       179 i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~  217 (228)
                      +.++       + .  ...++|||+|.||++++++++++
T Consensus       321 ~~~~-------g-~--~~~~~~lChG~aG~~~~ll~~~~  349 (411)
T 3e6u_A          321 IWQY-------G-L--LKKGYGLCHGSAGNAYAFLTLYN  349 (411)
T ss_dssp             HHHH-------C-S--BTTCSCSTTSHHHHHHHHHHHHH
T ss_pred             HHhc-------C-c--cCCCCceecChHHHHHHHHHHHH
Confidence            5443       1 1  12478999999999999999875

>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A

Probab=97.43  E-value=0.0013  Score=57.71  Aligned_cols=111  Identities=12%  Similarity=0.100  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCC------CCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC
Q 027089           67 EDVKGTLRYMIKNRFPSGNYPSSEG------SESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL  140 (228)
Q Consensus        67 ~~~~~~l~~l~~~~~~~g~w~~~~~------~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (228)
                      +.+.++++.+.+.+..++.++....      ++.-....||+|.  ...++..+++.++|+++.+.+++..+..++.+..
T Consensus        29 ~~l~~~~~~l~~~~~~~~~f~~~~~~~~~~d~k~~~~W~Wt~G~--~~~gl~~~ye~Tgd~~y~~~a~~~~~~~~~~~~~  106 (382)
T 3pmm_A           29 ALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGV--GLYGIYQYYQQTGDIEMRDIIDRWFADRFAEGAT  106 (382)
T ss_dssp             HHHHHHHHHHHHCCCTTCTTCEECTTSCEECSSSTTSCSHHHHH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccCccccccccCCccccccCCCCcCccccHHH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHcCCCC
Confidence            4556666666442223344432211      1222356788887  5667888899999999999999888777665422


Q ss_pred             CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089          141 KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR  182 (228)
Q Consensus       141 ~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~  182 (228)
                      . ..+=.+.+|  ..++.+|+.|+|++|++.+.++++.+.+.
T Consensus       107 ~-~n~D~~~~~--~~l~~lY~~Tgd~~Yl~~a~~~ad~L~~~  145 (382)
T 3pmm_A          107 T-KNVNTMAPF--LTLAYRFEETGRMAYLPWLESWAEWAMHE  145 (382)
T ss_dssp             C-CCTTTTTTH--HHHHHHHHHHCCGGGHHHHHHHHHHHHHT
T ss_pred             c-CcccchHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence            1 111113333  36789999999999999999999888765

>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A

Probab=96.91  E-value=0.0063  Score=53.16  Aligned_cols=153  Identities=14%  Similarity=0.057  Sum_probs=96.3

Q ss_pred             CchHHHHHHHHHHHHHhcC-CC-C---CCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Q 027089           63 PDEVEDVKGTLRYMIKNRF-PS-G---NYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR  137 (228)
Q Consensus        63 ~~~~~~~~~~l~~l~~~~~-~~-g---~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (228)
                      +.+++.+.++.+.+.. ++ +. |   .|....... ....-|-.-+-- +-++..+++.++|+++.+.|.+.++.+++.
T Consensus       107 ~~~~~~~~~aA~~L~~-r~~~~~g~i~sw~~~~~~~-~~~~~iID~mmn-i~~L~~A~~~~gd~~y~~~A~~~a~~~l~~  183 (377)
T 2ahf_A          107 ESARKLALDAADVLMR-RWRADAGIIQAWGPKGDPE-NGGRIIIDCLLN-LPLLLWAGEQTGDPEYRRVAEAHALKSRRF  183 (377)
T ss_dssp             HHHHHHHHHHHHHHHT-TEETTTTEECCBSSTTCTT-TTTEEEGGGGGG-HHHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-hCCCCCCeEEeccCCCCCC-CCceEEechHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            3456778888888775 44 33 2   253211111 111122111222 557888889999999999999987776543


Q ss_pred             C----------------------------CCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh---
Q 027089          138 G----------------------------LLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKL---  186 (228)
Q Consensus       138 ~----------------------------~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~---  186 (228)
                      -                            +..+.++..|.+-.+..+..+|+.|++++|++.|.++.++++++..+.   
T Consensus       184 ~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~~~d~~p  263 (377)
T 2ahf_A          184 LVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARVPEDGVV  263 (377)
T ss_dssp             TBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCTTSSC
T ss_pred             CcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhHHhCCc
Confidence            1                            112358888999999999999999999999999999999988875221   


Q ss_pred             hhcCCCCCCCCccccccchHHHHHHHHHccCC
Q 027089          187 IAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP  218 (228)
Q Consensus       187 ~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~  218 (228)
                      +.+-..+.....+---.+.|+.+..|+++...
T Consensus       264 ywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~~~  295 (377)
T 2ahf_A          264 YWDFEVPQEPSSYRDSSASAITACGLLEIASQ  295 (377)
T ss_dssp             BSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCccCCCccCCCHHHHHHHHHHHHHHh
Confidence            00000111111111246778888888887653

>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A

Probab=96.82  E-value=0.0076  Score=52.63  Aligned_cols=131  Identities=12%  Similarity=0.095  Sum_probs=93.5

Q ss_pred             HHHHHcccC---CCchHHHHHHHHHHHHHhcCC-CCC-CC----CC-CCC--------CCCcccccccCchHHHHHHHHH
Q 027089           53 MHVLMDMEL---KPDEVEDVKGTLRYMIKNRFP-SGN-YP----SS-EGS--------ESDRLVHWCHGAPGVTLTLAKA  114 (228)
Q Consensus        53 ~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~~-~g~-w~----~~-~~~--------~~~~~~~WC~G~~Gi~~al~~~  114 (228)
                      +.+|+..++   .+++++.+.+..+++.++.++ +|. |.    +. .+.        .-.....|+.|-+-.+++++.+
T Consensus       154 i~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~l  233 (377)
T 2ahf_A          154 LPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALN  233 (377)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHH
Confidence            446665554   356788899988888876653 343 11    11 111        0011257999999999999999


Q ss_pred             HHhhCcHHHHHHHHHHHHHHHHhC------CC--------CCCccccChhhHHHHHHHHHHHhC-----CHHHHHHHHHH
Q 027089          115 AEVFGEKEFLQAAVDAGEVVWKRG------LL--------KRVGICHGISGNTYVFLSLYRLTG-----NVEYLYRAKAF  175 (228)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~------~~--------~~~~lCHG~aG~~~~ll~l~~~~~-----~~~~~~~a~~~  175 (228)
                      ++.++++++++.+++..+.+++.-      +.        .++---.+.+..+..|+++++.++     +++|++.|.++
T Consensus       234 y~~T~d~~yL~~A~~la~~~l~~~~~d~~pywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~  313 (377)
T 2ahf_A          234 SRYLGNADLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTT  313 (377)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTCCTTSSCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHCChHHHHHHHHHHHHHHHhhHHhCCcccccCCCccCCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence            999999999999999888876531      00        012234678889999999999996     67899999998


Q ss_pred             HHHHHHHH
Q 027089          176 ACFLYDRA  183 (228)
Q Consensus       176 ~~~i~~~~  183 (228)
                      ++.+...+
T Consensus       314 l~~l~~~y  321 (377)
T 2ahf_A          314 VTALRDGY  321 (377)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            88887665

>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*

Probab=96.69  E-value=0.018  Score=50.65  Aligned_cols=148  Identities=13%  Similarity=0.064  Sum_probs=95.6

Q ss_pred             chHHHHHHHHHHHHHhcC-CCCC----CCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC
Q 027089           64 DEVEDVKGTLRYMIKNRF-PSGN----YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG  138 (228)
Q Consensus        64 ~~~~~~~~~l~~l~~~~~-~~g~----w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (228)
                      .+++.+.++.+++.. ++ +.+.    |.... +..+ ..-|-..+. -+-++..+++.++|+++.+.|.+.++.+++.-
T Consensus       134 ~~~~~~~~aA~~L~~-r~~~~~g~iqsw~~~~-~~~~-~~~iID~~m-ni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~  209 (397)
T 2zzr_A          134 KALEATIKAADKLME-RYQEKGGFIQAWGELG-YKEH-YRLIIDCLL-NIQLLFFAYEQTGDEKYRQVAVNHFYASANNV  209 (397)
T ss_dssp             HHHHHHHHHHHHHHT-TEETTTTEECCSSSTT-CGGG-CEEETTHHH-HTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH-HhCcCCCEEEecccCC-CCCC-CceeechHh-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence            357788888888875 55 3332    53211 1111 122333333 24466677888999999999998877765431


Q ss_pred             ----------------------------CCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh---h
Q 027089          139 ----------------------------LLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKL---I  187 (228)
Q Consensus       139 ----------------------------~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~---~  187 (228)
                                                  +..+.+|+.|.+-.++.+..+|+.|+|++|++.|.++.+.++++....   +
T Consensus       210 ~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~~~d~~py  289 (397)
T 2zzr_A          210 VRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLPEDKVSY  289 (397)
T ss_dssp             BCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCCTTSCCB
T ss_pred             cCCCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHhCCcc
Confidence                                        112356777889999999999999999999999999999988875321   0


Q ss_pred             hcCC---CCCCCCccccccchHHHHHHHHHccCC
Q 027089          188 AEGK---MHGGDRPYSLFEGIGGMTHLFLDMIEP  218 (228)
Q Consensus       188 ~~g~---~~~~~~~~gl~~G~aGi~~~Ll~l~~~  218 (228)
                      .+-.   .+....+   -.|.|..+..|+++...
T Consensus       290 wdt~~~~~~~~~~D---~Sa~aiaA~~Ll~L~~~  320 (397)
T 2zzr_A          290 WDLIFTDGSGQPRD---TSATATAVCGIHEMLKY  320 (397)
T ss_dssp             SBTTCCTTSCCCBC---HHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCCCCCCcCC---CCHHHHHHHHHHHHHHh
Confidence            1100   1111112   46777788888887764

>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A

Probab=96.61  E-value=0.043  Score=47.86  Aligned_cols=164  Identities=14%  Similarity=0.087  Sum_probs=101.8

Q ss_pred             chHHHHHHHHcccC---CCchHHHHHHHHHHHHHhcC--CCCC-CCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcH
Q 027089           48 GLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRF--PSGN-YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEK  121 (228)
Q Consensus        48 G~aGi~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~--~~g~-w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~  121 (228)
                      +..|.  +|..+|+   .+.+++.+.+..+++.+...  +.|. |.... +......-|+.|.--.+..+..+++.++|+
T Consensus       113 ~~~~~--~l~~lY~~Tgd~~Yl~~a~~~ad~L~~~~~r~~~Ggf~~~~~-~~~~~~~~WiDgl~M~~p~La~~~~~tgd~  189 (382)
T 3pmm_A          113 MAPFL--TLAYRFEETGRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTL-AEENHQQMWDDTLMMTVLPLAKIGKLLNRP  189 (382)
T ss_dssp             TTTHH--HHHHHHHHHCCGGGHHHHHHHHHHHHHTSCBCGGGCBCCCCS-SCCCTTEEETTHHHHTHHHHHHHHHHTTCH
T ss_pred             hHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCcCCCeeeecC-CCCCCCcEEecchhhhHHHHHHHHHHHCCH
Confidence            44443  4455554   35678899999998875332  3444 42211 111233569999877777888999999999


Q ss_pred             HHHHHHHHHHHHHHHh------CC------------CCCCccccChhhHHHHHHHHHHH-------hCCHHHHHHHHHHH
Q 027089          122 EFLQAAVDAGEVVWKR------GL------------LKRVGICHGISGNTYVFLSLYRL-------TGNVEYLYRAKAFA  176 (228)
Q Consensus       122 ~~~~~~~~~~~~~~~~------~~------------~~~~~lCHG~aG~~~~ll~l~~~-------~~~~~~~~~a~~~~  176 (228)
                      ++.+.|.+-+....+.      ++            ..+..|+.|.+=.+..+..+++.       ++.+++++.+++++
T Consensus       190 ~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a  269 (382)
T 3pmm_A          190 QYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQI  269 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHH
Confidence            9999887665554432      11            12356667776666677777776       33456777788887


Q ss_pred             HHHHHHHhhhhhcCC---CCCCCCccccccchHHHHHHHHHccC
Q 027089          177 CFLYDRAQKLIAEGK---MHGGDRPYSLFEGIGGMTHLFLDMIE  217 (228)
Q Consensus       177 ~~i~~~~~~~~~~g~---~~~~~~~~gl~~G~aGi~~~Ll~l~~  217 (228)
                      +.+++...+   +|-   ......++-=-.|+|.+++++++..+
T Consensus       270 ~~~~~~q~~---~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~  310 (382)
T 3pmm_A          270 AALAECQDD---SGLWHTLLDDPHSYLEASATAGFAYGILKAVR  310 (382)
T ss_dssp             HHHHHHCCT---TSCEESBTTCTTSCEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCC---CCChhhccCCCCCCccccHHHHHHHHHHHHHH
Confidence            777776432   221   11111133335678888999888665

>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}

Probab=96.55  E-value=0.0057  Score=53.03  Aligned_cols=135  Identities=9%  Similarity=-0.055  Sum_probs=84.5

Q ss_pred             hHHHHHHHHcccCC----CchHHHHHHHHHHHHHhcC-CCCCCCCCCC-CCCC-cccccccCchHHHHHHHHHHHhhCcH
Q 027089           49 LAGIMHVLMDMELK----PDEVEDVKGTLRYMIKNRF-PSGNYPSSEG-SESD-RLVHWCHGAPGVTLTLAKAAEVFGEK  121 (228)
Q Consensus        49 ~aGi~~~L~~~~~~----~~~~~~~~~~l~~l~~~~~-~~g~w~~~~~-~~~~-~~~~WC~G~~Gi~~al~~~~~~~~~~  121 (228)
                      .+=++++++..+..    +.+++.++++++|+.+... ++|.|..... +... ....-+++-+=.++++..+++.++++
T Consensus        55 nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~  134 (388)
T 2gz6_A           55 QNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEE  134 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCH
Confidence            34455666665542    3468899999999997534 4566543211 1111 11223334444777888888999999


Q ss_pred             HHHHHHHHHHHHHHHhC-----CC----CCCccccChhh---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          122 EFLQAAVDAGEVVWKRG-----LL----KRVGICHGISG---NTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       122 ~~~~~~~~~~~~~~~~~-----~~----~~~~lCHG~aG---~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      ++++.|.+..+.+.+.-     +.    ......-|..+   .+..++.++++|++++|++.|.++++.+.++.
T Consensus       135 ~~l~~A~~~~~~i~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~~~~  208 (388)
T 2gz6_A          135 WAKDVAMQAYNNVLRRKDNPKGKYTKTYPGTRPMKALAVPMILANLTLEMEWLLPQETLENVLAATVQEVMGDF  208 (388)
T ss_dssp             HHHHHHHHHHHHHHTC--------------CCCCEETHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccCcccCCCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            99999999888775421     10    00011122333   34456888999999999999999988887664

>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}

Probab=96.45  E-value=0.035  Score=48.56  Aligned_cols=133  Identities=17%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             HHHHHHHHcccC---CCchHHHHHHHHHHHHHhcC-CC-CCCCCCCCCCCC-cccccccCchHHHHHHHHHHHhhCcHHH
Q 027089           50 AGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRF-PS-GNYPSSEGSESD-RLVHWCHGAPGVTLTLAKAAEVFGEKEF  123 (228)
Q Consensus        50 aGi~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~-~~-g~w~~~~~~~~~-~~~~WC~G~~Gi~~al~~~~~~~~~~~~  123 (228)
                      +=++++++..+.   .+.+++.+++.++|+.+... ++ |.|.....+... .....|+.-+=++++++. +..++++++
T Consensus        55 ~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~-~~~tgd~~~  133 (402)
T 3gt5_A           55 TRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSC-GLKVGIKQA  133 (402)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHH-HHHTTCTTH
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHH-HHHhCChhH
Confidence            445666666653   34568899999999987533 23 554432211111 123567777777778888 556899999


Q ss_pred             HHHHHHHHHHHHHhC-------CC----CCCcc--ccChhh---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          124 LQAAVDAGEVVWKRG-------LL----KRVGI--CHGISG---NTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       124 ~~~~~~~~~~~~~~~-------~~----~~~~l--CHG~aG---~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      ++.|++..+.+.+.-       +.    .+..+  --+...   .++.++.++++|++++|+++|+++++.+.++.
T Consensus       134 l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~~~~~~~~n~~m~l~eall~L~~~tgd~~~~~~a~~l~~~~~~~f  209 (402)
T 3gt5_A          134 REWMDETWCLLERHFWDAEYGLYKDEADAQWNFTRYRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRRQ  209 (402)
T ss_dssp             HHHHHHHHHHHHHHTEETTTTEECCEECTTCCBCSCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHhcCCcCCCchhhhCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHh
Confidence            999999888776531       11    11001  012222   45568999999999999999999988877654

>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*

Probab=96.02  E-value=0.047  Score=47.94  Aligned_cols=170  Identities=10%  Similarity=0.062  Sum_probs=106.3

Q ss_pred             HHHHHHHHhcHHhhhcCCCCC--ceeecC--c--cccccccchHHHHHHHHcccC---CCchHHHHHHHHHHHHHhcCC-
Q 027089           13 AVVDEIIKAGRRLANRGRCPL--MYEWHG--K--KYWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFP-   82 (228)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~--~~~G~aHG~aGi~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~~-   82 (228)
                      ++-+.+++.++-++.|-+...  ...|..  .  ...-+.-.+. -+.+|+..++   .+++++.+.+..+++.++.++ 
T Consensus       134 ~~~~~~~~aA~~L~~r~~~~~g~iqsw~~~~~~~~~~~iID~~m-ni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~r~  212 (397)
T 2zzr_A          134 KALEATIKAADKLMERYQEKGGFIQAWGELGYKEHYRLIIDCLL-NIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRD  212 (397)
T ss_dssp             HHHHHHHHHHHHHHTTEETTTTEECCSSSTTCGGGCEEETTHHH-HTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCT
T ss_pred             HHHHHHHHHHHHHHHHhCcCCCEEEecccCCCCCCCceeechHh-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCC
Confidence            355666667777766522221  222321  1  1111122222 3445555544   345688888888888876653 


Q ss_pred             CCC-CC----CC-CCC--------CCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC------C---
Q 027089           83 SGN-YP----SS-EGS--------ESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG------L---  139 (228)
Q Consensus        83 ~g~-w~----~~-~~~--------~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---  139 (228)
                      +|. +.    +. .+.        .-.....|+.|-+-.+++++.+++.++|+++++.+.+..+.+.+.-      +   
T Consensus       213 dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~~~d~~pywdt  292 (397)
T 2zzr_A          213 DSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLPEDKVSYWDL  292 (397)
T ss_dssp             TSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCCTTSCCBSBT
T ss_pred             CCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHhCCccccC
Confidence            342 11    10 111        0011237999999999999999999999999999998888776531      0   


Q ss_pred             -----CCCCccccChhhHHHHHHHHHHHhCC---HH--HHHHHHHHHHHHHHHH
Q 027089          140 -----LKRVGICHGISGNTYVFLSLYRLTGN---VE--YLYRAKAFACFLYDRA  183 (228)
Q Consensus       140 -----~~~~~lCHG~aG~~~~ll~l~~~~~~---~~--~~~~a~~~~~~i~~~~  183 (228)
                           ...+-=-.|.+..+..|+++++.+++   ++  |.+.|.++++.+...+
T Consensus       293 ~~~~~~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y  346 (397)
T 2zzr_A          293 IFTDGSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLIEQY  346 (397)
T ss_dssp             TCCTTSCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHH
Confidence                 00111246788888999999999886   77  9999999888877664

>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}

Probab=95.93  E-value=0.06  Score=46.39  Aligned_cols=132  Identities=13%  Similarity=0.023  Sum_probs=81.9

Q ss_pred             cchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCC---CCC--CCCCCCCCCCcccccccCchHHHHHHHHHHHhh
Q 027089           47 HGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFP---SGN--YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVF  118 (228)
Q Consensus        47 HG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~---~g~--w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~  118 (228)
                      |=.+=.+.++..+++.   +.+++.++++.+++....+.   .|.  |...   ..+.....  +..-.+.++.++++.+
T Consensus        92 DD~a~~~la~~~aye~t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~---~~~~knai--sN~~~~~~la~l~~~t  166 (349)
T 3k7x_A           92 DDMLWNALAAYRLYKATGKSIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRP---QMYYKNTP--VNAPFIILSCWLYNEL  166 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCSGGGSCBEEETT---EEEEEEHH--HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhCCCCCCCCceEecCC---Cccccchh--hHHHHHHHHHHHHHHh
Confidence            4333345566666653   44688889899888333442   233  4321   01111223  4455566677788899


Q ss_pred             CcHHHHHHHHHHHHHHHHhC-----CCCC------C-------ccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 027089          119 GEKEFLQAAVDAGEVVWKRG-----LLKR------V-------GICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY  180 (228)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~-----~~~~------~-------~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~  180 (228)
                      +|+++.+.|++..+.+.+.-     ..-+      .       .+-.+..=.+..+..+|+.|+|++|+++|.++++.++
T Consensus       167 gd~~Yl~~A~~~~~w~~~~l~d~~g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~LY~~T~d~~yl~~a~~l~~~~~  246 (349)
T 3k7x_A          167 NETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLELYRITKEAIYLDTANKTAAISL  246 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHBCTTSCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCeEecCCccCCCCccCCcCeeeHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence            99999999999887765421     1000      0       1111222256777889999999999999999988887


Q ss_pred             HHH
Q 027089          181 DRA  183 (228)
Q Consensus       181 ~~~  183 (228)
                      +..
T Consensus       247 ~~f  249 (349)
T 3k7x_A          247 KEL  249 (349)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}

Probab=95.88  E-value=0.1  Score=44.86  Aligned_cols=123  Identities=17%  Similarity=0.081  Sum_probs=82.0

Q ss_pred             hHHHHHHHHcccC---CCchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHH
Q 027089           49 LAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQ  125 (228)
Q Consensus        49 ~aGi~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~  125 (228)
                      .+|.+-+|..++.   .+.+.+.+.+.+.++...  ..+.|+...   .+ -.+|      .+++++.+++.++++++++
T Consensus        48 ~a~~~~~l~d~~~~tgd~~y~~~a~~~~~~~~~~--~~~~~~~~~---~D-D~a~------~~la~~~aye~t~~~~yL~  115 (349)
T 3k7x_A           48 LAHLVEVRLDAYLRTKKQADLEVAEKTYLHNKNR--NGGTLIHDF---YD-DMLW------NALAAYRLYKATGKSIYLE  115 (349)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--TTSSSCCSB---HH-HHHH------HHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--CCCCCCccC---cc-HHHH------HHHHHHHHHHHHCCchHHH
Confidence            3455566666654   234678888888877642  223343211   11 2344      3479999999999999999


Q ss_pred             HHHHHHHHHHHhCCC----------C---CCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          126 AAVDAGEVVWKRGLL----------K---RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       126 ~~~~~~~~~~~~~~~----------~---~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      .++...+.+......          .   +.--..+++-.+.++.++++.|+|++|++.|++..+.+.+..
T Consensus       116 ~A~~l~~~l~~~~wd~~~gGGi~W~~~~~~~knaisN~~~~~~la~l~~~tgd~~Yl~~A~~~~~w~~~~l  186 (349)
T 3k7x_A          116 DAQLVWQDLVDTGWNDIMGGGFAWRRPQMYYKNTPVNAPFIILSCWLYNELNETKYLEWAMKTYEWQTKVL  186 (349)
T ss_dssp             HHHHHHHHHHHHTBCSGGGSCBEEETTEEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCceEecCCCccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            999988887322110          0   000111567778888899999999999999999999887753

>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*

Probab=95.30  E-value=0.067  Score=46.35  Aligned_cols=147  Identities=14%  Similarity=0.084  Sum_probs=86.4

Q ss_pred             CchHHHHHHHHHHHHHhcC--CCCC-CCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCC
Q 027089           63 PDEVEDVKGTLRYMIKNRF--PSGN-YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL  139 (228)
Q Consensus        63 ~~~~~~~~~~l~~l~~~~~--~~g~-w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (228)
                      +.+++.+.+..+++.. .+  .+|. |...    .....-|+.|+.-.+..++.+++.++|+++.+.+.+.++...+.-.
T Consensus       106 ~~yl~~a~~la~~l~~-~~r~~~G~fw~~~----~~~~~~w~D~l~m~~p~L~~l~~~tgd~~y~d~A~~~~~~~~~~l~  180 (373)
T 1nc5_A          106 ERYVKAAKRLRSLYGT-LNRTSEGGFWHKD----GYPYQMWLDGLYMGGPFALKYANLKQETELFDQVVLQESLMRKHTK  180 (373)
T ss_dssp             HHHHHHHHHHHGGGGT-SCBCTTSCBCSCT----TSTTEEETHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHB
T ss_pred             HHHHHHHHHHHHHHHh-ccCCCCCCeeccC----CCCCeEEeCcHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence            4467777777777743 44  2343 5431    1223579999877777889999999999999999887766554322


Q ss_pred             CCCCccc-c---------------C------hhhHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHHhhhhhc
Q 027089          140 LKRVGIC-H---------------G------ISGNTYVFLSLYRLT--------GNVEYLYRAKAFACFLYDRAQKLIAE  189 (228)
Q Consensus       140 ~~~~~lC-H---------------G------~aG~~~~ll~l~~~~--------~~~~~~~~a~~~~~~i~~~~~~~~~~  189 (228)
                      ....+++ |               |      .-|+++++.-+.++.        ++++|++.++++++.+++...+  ++
T Consensus       181 D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~WaRg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~--~d  258 (373)
T 1nc5_A          181 DAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDK--ET  258 (373)
T ss_dssp             CTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCT--TT
T ss_pred             CCCCCCEEeecCCccccccccccCCCCCCcccchHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCC--CC
Confidence            1122222 3               2      236666665554443        4566888888877777665322  12


Q ss_pred             CC----CCCC--CCccccccchHHHHHHHHHcc
Q 027089          190 GK----MHGG--DRPYSLFEGIGGMTHLFLDMI  216 (228)
Q Consensus       190 g~----~~~~--~~~~gl~~G~aGi~~~Ll~l~  216 (228)
                      |-    +..+  ..++-=-.|+|.+++.+++..
T Consensus       259 G~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~  291 (373)
T 1nc5_A          259 GLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGI  291 (373)
T ss_dssp             SCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHH
T ss_pred             CceeeecCCCCCCCCCccccHHHHHHHHHHHHH
Confidence            21    1101  011111346788888888754

>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*

Probab=95.12  E-value=0.12  Score=44.66  Aligned_cols=74  Identities=12%  Similarity=0.007  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CC-----------CccccChhhHHHHHHHHHHHhCCHHHHHHHHHHH
Q 027089          109 LTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KR-----------VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFA  176 (228)
Q Consensus       109 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~  176 (228)
                      .+++.+++.++|+++++.+....+.+.. .+. .+           ..+|.|..-++.+|..+++.|+|++|++.|.+.+
T Consensus        94 ~~ll~lY~~Tgd~~yl~~a~~la~~l~~-~~r~~~G~fw~~~~~~~~~w~D~l~m~~p~L~~l~~~tgd~~y~d~A~~~~  172 (373)
T 1nc5_A           94 LILFPLYEQTKDERYVKAAKRLRSLYGT-LNRTSEGGFWHKDGYPYQMWLDGLYMGGPFALKYANLKQETELFDQVVLQE  172 (373)
T ss_dssp             GGHHHHHHHHCCHHHHHHHHHHHGGGGT-SCBCTTSCBCSCTTSTTEEETHHHHHHHHHHHHHHHHHTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHh-ccCCCCCCeeccCCCCCeEEeCcHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            5778889999999999999888777632 111 11           2356677667888999999999999999999887


Q ss_pred             HHHHHHH
Q 027089          177 CFLYDRA  183 (228)
Q Consensus       177 ~~i~~~~  183 (228)
                      ....++.
T Consensus       173 ~~~~~~l  179 (373)
T 1nc5_A          173 SLMRKHT  179 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776664

>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3

Probab=94.68  E-value=0.14  Score=44.46  Aligned_cols=78  Identities=15%  Similarity=0.218  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHH-HHhCCCCC-Ccccc-----Chh---------------hHHHHHHHHHHHhC
Q 027089          107 VTLTLAKAAEVFGEKEFLQAAVDAGEVV-WKRGLLKR-VGICH-----GIS---------------GNTYVFLSLYRLTG  164 (228)
Q Consensus       107 i~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~lCH-----G~a---------------G~~~~ll~l~~~~~  164 (228)
                      .++.+++++..++++++.+.++++++.+ .+.+...+ .+++|     |..               =.+..++.+|+.|+
T Consensus       252 ~~wlL~~a~~~~~~~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~~l~d~~~~~W~qaea~~a~l~ly~~tg  331 (402)
T 1fp3_A          252 AGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESG  331 (402)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhC
Confidence            4446778888899999999999988887 66543222 23333     321               12677889999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHh
Q 027089          165 NVEYLYRAKAFACFLYDRAQ  184 (228)
Q Consensus       165 ~~~~~~~a~~~~~~i~~~~~  184 (228)
                      |++|++.+.++.+.+..+..
T Consensus       332 d~~yl~~a~~~~~~~~~~f~  351 (402)
T 1fp3_A          332 DPALLRLFYQVAEYTFRQFR  351 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHTB
T ss_pred             CHHHHHHHHHHHHHHHHhCc
Confidence            99999999999888877653

>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}

Probab=94.49  E-value=0.34  Score=41.59  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=78.2

Q ss_pred             HHHHHHcccCCC---chHHHHHHHHHHHHHhcC--CCCCCCC---CCCCCCC-cccccccCchH----HHHHHHHHHHhh
Q 027089           52 IMHVLMDMELKP---DEVEDVKGTLRYMIKNRF--PSGNYPS---SEGSESD-RLVHWCHGAPG----VTLTLAKAAEVF  118 (228)
Q Consensus        52 i~~~L~~~~~~~---~~~~~~~~~l~~l~~~~~--~~g~w~~---~~~~~~~-~~~~WC~G~~G----i~~al~~~~~~~  118 (228)
                      .+.++..++..+   .+++.+.++++.+.+...  +.|.+..   ...+..+ .....  =.||    .++.++.+.+.+
T Consensus       177 ~~~all~l~~~t~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e~~~~~w~~~~~~~~~~--~~pgh~~e~a~lL~~~~~~t  254 (388)
T 2gz6_A          177 LANLTLEMEWLLPQETLENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRL--INPGHGIEAMWFIMDIARRK  254 (388)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHHHTTEETTTTEECSEECTTSCCCCSTTTTE--ECHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCCCCcccCc--CCCCHHHHHHHHHHHHHHHc
Confidence            344556666543   246778888887765322  2232110   0000000 00001  1234    555688888899


Q ss_pred             CcHHHHHHHHHHHHHHHHhCCCCC-Ccccc-----Ch---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027089          119 GEKEFLQAAVDAGEVVWKRGLLKR-VGICH-----GI---------------SGNTYVFLSLYRLTGNVEYLYRAKAFAC  177 (228)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~-~~lCH-----G~---------------aG~~~~ll~l~~~~~~~~~~~~a~~~~~  177 (228)
                      +++++.+.+++.++...+.+...+ -+++|     |.               +=.+..++.+|+.|++++|++.+.++.+
T Consensus       255 gd~~~~~~A~~~~~~~~~~g~d~~~Gg~~~~~~~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd~~yl~~a~~~~~  334 (388)
T 2gz6_A          255 NDSKTINQAVDVVLNILNFAWDNEYGGLYYFMDAAGHPPQQLEWDQKLWWVHLESLVALAMGYRLTGRDACWAWYQKMHD  334 (388)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHBCTTTCSBCSCEETTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999988887766543222 33333     21               2235556778999999999999999888


Q ss_pred             HHHHHHh
Q 027089          178 FLYDRAQ  184 (228)
Q Consensus       178 ~i~~~~~  184 (228)
                      ++.++..
T Consensus       335 ~~~~~~~  341 (388)
T 2gz6_A          335 YSWQHFA  341 (388)
T ss_dssp             HHHHHHB
T ss_pred             HHHHhCc
Confidence            8876653

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=93.23  E-value=1.6  Score=38.66  Aligned_cols=168  Identities=12%  Similarity=0.063  Sum_probs=99.1

Q ss_pred             cccccchHHHHHHHHcccC---CCchHHHHHHHHHHHHHhcC--CCCC-CCCCCCCCCCcccccccCchHHHHHHHHHHH
Q 027089           43 WGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRF--PSGN-YPSSEGSESDRLVHWCHGAPGVTLTLAKAAE  116 (228)
Q Consensus        43 ~G~aHG~aGi~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~--~~g~-w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~  116 (228)
                      .++.+=.+.++.+|..+++   ...+++.+.+..+++.+...  ++|. |...    .....-|+.|.--....+..+++
T Consensus       141 ~~~LDD~g~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~----~~~~q~WiD~lyM~~pfla~~~~  216 (445)
T 3k11_A          141 PHALDDAGAVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARNR----PQRNTLWLDDMFMGIPAVAQMSR  216 (445)
T ss_dssp             CCSGGGTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCS----SSTTEEETHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCCCceeecC----CCCCceEecchhhHHHHHHHHHH
Confidence            4555556677778877774   24578999999999987432  3454 5321    12245799998667777888889


Q ss_pred             hhCcHH--HHHHHHHHHHHHHHh------CC-----------CCCCccccChhhHHHHHHHHHHHh-----CCHHHHHHH
Q 027089          117 VFGEKE--FLQAAVDAGEVVWKR------GL-----------LKRVGICHGISGNTYVFLSLYRLT-----GNVEYLYRA  172 (228)
Q Consensus       117 ~~~~~~--~~~~~~~~~~~~~~~------~~-----------~~~~~lCHG~aG~~~~ll~l~~~~-----~~~~~~~~a  172 (228)
                      .++|++  +.++|.+-.....+.      ++           .....|.-|..=.+..+..+++.+     +.+++++..
T Consensus       217 ~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~  296 (445)
T 3k11_A          217 YDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYF  296 (445)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHH
T ss_pred             HHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHH
Confidence            999998  888887654443321      11           011244444444444444455543     345566666


Q ss_pred             HHHHHHHHHHHhhhhhcCC---CCCCCCccccccchHHHHHHHHHccC
Q 027089          173 KAFACFLYDRAQKLIAEGK---MHGGDRPYSLFEGIGGMTHLFLDMIE  217 (228)
Q Consensus       173 ~~~~~~i~~~~~~~~~~g~---~~~~~~~~gl~~G~aGi~~~Ll~l~~  217 (228)
                      ++.++.+++...+   +|.   ......++-=-.|+|.+++.+++..+
T Consensus       297 ~~~a~~l~~~Q~~---~G~W~~vld~~~~y~EsSaTAmfaygllkgvr  341 (445)
T 3k11_A          297 RAHVRGVTALQSG---EGFWHQLLDCNDSYLETSATAIYVYCLAHAIN  341 (445)
T ss_dssp             HHHHHHHHTTCCT---TSCEESBTTCTTSCEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC---CCchhhccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            6766666555322   221   11111233235678888888887654

>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*

Probab=93.08  E-value=0.24  Score=43.41  Aligned_cols=130  Identities=18%  Similarity=0.091  Sum_probs=80.6

Q ss_pred             HHHHHHcccC--CCchHHHHHHHHHHHHHhcCC--CCCCCCCC-CCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHH
Q 027089           52 IMHVLMDMEL--KPDEVEDVKGTLRYMIKNRFP--SGNYPSSE-GSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQA  126 (228)
Q Consensus        52 i~~~L~~~~~--~~~~~~~~~~~l~~l~~~~~~--~g~w~~~~-~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~  126 (228)
                      ++++++..+.  .+++++.++++++++.+..+.  .|.|..+. .+........++.-+=++.++.. ++.++++++++.
T Consensus        56 ~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~-~~~tg~~~~l~~  134 (421)
T 2zbl_A           56 MLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAAS-AVTTGHPEARKL  134 (421)
T ss_dssp             HHHHHHHHHHTTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHH-HHTTTCTTHHHH
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHH-HHHhCCccHHHH
Confidence            3444554443  356789999999999875443  25544321 11100002445555666777777 788999999999


Q ss_pred             HHHHHHHHHHhC-------CC----CCCcccc---Chhh---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089          127 AVDAGEVVWKRG-------LL----KRVGICH---GISG---NTYVFLSLYRLTGNVEYLYRAKAFACFLYDR  182 (228)
Q Consensus       127 ~~~~~~~~~~~~-------~~----~~~~lCH---G~aG---~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~  182 (228)
                      +.+..+.+.+.-       +.    .+.....   +..+   .+..++.+++++++++|+++|.++++.+...
T Consensus       135 a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~~~~~~~~~n~~m~~~~al~~l~~~tgd~~~~~~A~~~~~~~~~~  207 (421)
T 2zbl_A          135 LDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHD  207 (421)
T ss_dssp             HHHHHHHHHHHTEETTTTEECCEECTTSCSBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccCCCCCeeeeecCCCCcccccCCCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence            988877765421       00    0000111   1334   3788889999999999999999887776543

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=92.86  E-value=0.76  Score=39.13  Aligned_cols=131  Identities=11%  Similarity=0.150  Sum_probs=84.9

Q ss_pred             hHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC--cccccccCchHHHHHHHHHHHh------
Q 027089           49 LAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHGAPGVTLTLAKAAEV------  117 (228)
Q Consensus        49 ~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~--~~~~WC~G~~Gi~~al~~~~~~------  117 (228)
                      .+-++.+|++++..   ..+.+.+.+.++|++.-++++|.|+.-..+...  ...-+|....+=++-++.....      
T Consensus        76 Ta~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~  155 (332)
T 1gxm_A           76 TITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFD  155 (332)
T ss_dssp             THHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCcc
Confidence            67899999998753   346789999999999989999999854322111  1244666666655555544321      


Q ss_pred             ---hCc---HHHHHHHHHHHHHHHHhCCC-------------------------CCCccccC-hhhHHHHHHHHHHHhCC
Q 027089          118 ---FGE---KEFLQAAVDAGEVVWKRGLL-------------------------KRVGICHG-ISGNTYVFLSLYRLTGN  165 (228)
Q Consensus       118 ---~~~---~~~~~~~~~~~~~~~~~~~~-------------------------~~~~lCHG-~aG~~~~ll~l~~~~~~  165 (228)
                         +.+   ++....++++++.+++....                         ..++||-. .+|++.+++....   +
T Consensus       156 ~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~---~  232 (332)
T 1gxm_A          156 TDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ---T  232 (332)
T ss_dssp             STTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC---C
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC---C
Confidence               112   56667788888988764210                         12467755 5677777776554   5


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 027089          166 VEYLYRAKAFACFLYDR  182 (228)
Q Consensus       166 ~~~~~~a~~~~~~i~~~  182 (228)
                      +++++.+.+.++.+...
T Consensus       233 ~~v~~aI~~Av~WL~~~  249 (332)
T 1gxm_A          233 AEIEQAVRAGVAWFNSP  249 (332)
T ss_dssp             HHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            77777777666665444

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=92.47  E-value=0.96  Score=40.16  Aligned_cols=85  Identities=11%  Similarity=0.042  Sum_probs=60.1

Q ss_pred             cccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH-----------hCCC-------CCCccccChhhHHHHHHHH
Q 027089           98 VHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWK-----------RGLL-------KRVGICHGISGNTYVFLSL  159 (228)
Q Consensus        98 ~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-------~~~~lCHG~aG~~~~ll~l  159 (228)
                      .+|..  .-++.++.++++.++|+++.+.+++.++.+.+           .+-.       ..+...+=...++..++.+
T Consensus        80 ~~y~~--Gv~l~gl~~ay~~Tgd~kY~~ya~~~~dfi~~~~p~~~~~~~~~G~l~~~~r~~~~~~~LDD~g~~~~~Li~l  157 (445)
T 3k11_A           80 ASYEW--GVTYSALIAAAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEKGKTDSQLLQILTPHALDDAGAVCTAMIKL  157 (445)
T ss_dssp             TSHHH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHSCCSGGGTHHHHHHHHHH
T ss_pred             CccCH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccchhhhhhhccCCeecccccccCCCcchhHHHHHHHHHHH
Confidence            35666  44566788889999999999999987765432           1110       0111222235566777899


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHh
Q 027089          160 YRLTGNVEYLYRAKAFACFLYDRAQ  184 (228)
Q Consensus       160 ~~~~~~~~~~~~a~~~~~~i~~~~~  184 (228)
                      |+.+++++|++.|.++++.++++..
T Consensus       158 Y~~T~d~~yl~~a~~~ad~L~~~~p  182 (445)
T 3k11_A          158 RLKDESLPVDGLIQNYFDFIINKEY  182 (445)
T ss_dssp             HHHCTTCCCHHHHHHHHHHHHHTSC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999988753

>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*

Probab=91.80  E-value=2.9  Score=36.45  Aligned_cols=77  Identities=13%  Similarity=0.043  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhh---Cc--H-HHHHHHHHHHHHHHHhCCCCC--Ccc-----ccCh-----------hhHHHHHHHHHHHh
Q 027089          108 TLTLAKAAEVF---GE--K-EFLQAAVDAGEVVWKRGLLKR--VGI-----CHGI-----------SGNTYVFLSLYRLT  163 (228)
Q Consensus       108 ~~al~~~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~--~~l-----CHG~-----------aG~~~~ll~l~~~~  163 (228)
                      ++.++++++.+   ++  + ++.+.+.+..+.+++.+...+  .++     +.|.           +=.+..++.+|+.|
T Consensus       253 ~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g~d~~~~GG~~~~~~~~g~~~~~~k~~w~~aea~~all~l~~~t  332 (421)
T 2zbl_A          253 GRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLT  332 (421)
T ss_dssp             HHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHBSCSSSSSBCSCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHhcCCCCCCcEEEeecCCCCccCCCcccHHHHHHHHHHHHHHHHh
Confidence            45677778877   34  4 788888888777655332111  111     2232           33466788899999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHh
Q 027089          164 GNVEYLYRAKAFACFLYDRAQ  184 (228)
Q Consensus       164 ~~~~~~~~a~~~~~~i~~~~~  184 (228)
                      ++++|++.+.++.+.+.....
T Consensus       333 gd~~yl~~a~~~~~~~~~~~~  353 (421)
T 2zbl_A          333 DDSQYEEWYQKWWDYCIKYLM  353 (421)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTB
T ss_pred             CCHHHHHHHHHHHHHHHHhCC
Confidence            999999999998888766544

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=91.11  E-value=1.2  Score=38.95  Aligned_cols=132  Identities=11%  Similarity=0.108  Sum_probs=82.8

Q ss_pred             hHHHHHHHHcccCC----C--chHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC--cccccccCchHHHHHHHH-HHHhhC
Q 027089           49 LAGIMHVLMDMELK----P--DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHGAPGVTLTLAK-AAEVFG  119 (228)
Q Consensus        49 ~aGi~~~L~~~~~~----~--~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~--~~~~WC~G~~Gi~~al~~-~~~~~~  119 (228)
                      .+-++.+|.+++..    .  .+.+.+.+.++|++.-++++|.|+.-..+...  ...-+|....+-++.++. +..-..
T Consensus       151 Ta~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~  230 (408)
T 1r76_A          151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRD  230 (408)
T ss_dssp             THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccC
Confidence            77889999998653    2  35788999999999989999999854322211  123466666666665443 333111


Q ss_pred             ---------cHHHHHHHHHHHHHHHHhCCC-------------------------CCCccccC-hhhHHHHHHHHHHHhC
Q 027089          120 ---------EKEFLQAAVDAGEVVWKRGLL-------------------------KRVGICHG-ISGNTYVFLSLYRLTG  164 (228)
Q Consensus       120 ---------~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~lCHG-~aG~~~~ll~l~~~~~  164 (228)
                               +++....++++++.+++....                         ..+++|-. .+|++.+|+.+.  ..
T Consensus       231 ~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~--~~  308 (408)
T 1r76_A          231 GFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIE--AP  308 (408)
T ss_dssp             TCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSS--SC
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHccCC--CC
Confidence                     246677788888888765321                         01244322 344555554444  36


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 027089          165 NVEYLYRAKAFACFLYDR  182 (228)
Q Consensus       165 ~~~~~~~a~~~~~~i~~~  182 (228)
                      ++++++.+.+..+.+...
T Consensus       309 ~~~~~~aI~~Av~WL~s~  326 (408)
T 1r76_A          309 SDAVKQAIRGGVAWLNTS  326 (408)
T ss_dssp             CHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            778888887777776654

>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3

Probab=89.70  E-value=3.1  Score=35.80  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhh---CcHHHHHHHHHHHHHHHHhCCCCC------------------CccccChhhHHHHHHHHHHHhCC
Q 027089          107 VTLTLAKAAEVF---GEKEFLQAAVDAGEVVWKRGLLKR------------------VGICHGISGNTYVFLSLYRLTGN  165 (228)
Q Consensus       107 i~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------------------~~lCHG~aG~~~~ll~l~~~~~~  165 (228)
                      +++++..++..+   +++++++.++++++.+.+......                  ...|-+.+=.+..+..+++.|++
T Consensus        61 ~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd  140 (402)
T 1fp3_A           61 QVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAE  140 (402)
T ss_dssp             HHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCC
Confidence            355566667766   899999999999988866421100                  12233355667788889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 027089          166 VEYLYRAKAFACFLYDRAQ  184 (228)
Q Consensus       166 ~~~~~~a~~~~~~i~~~~~  184 (228)
                      +++++.|.++++.+.....
T Consensus       141 ~~~~~~A~~l~~~~~~~~~  159 (402)
T 1fp3_A          141 ARYQSEAVDMMDQIVHWVR  159 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999998887753

>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}

Probab=88.95  E-value=2.6  Score=38.74  Aligned_cols=121  Identities=8%  Similarity=0.011  Sum_probs=73.5

Q ss_pred             cccchHHHHHHHHcccCC-----C---chHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchH------HHHH
Q 027089           45 AAHGLAGIMHVLMDMELK-----P---DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPG------VTLT  110 (228)
Q Consensus        45 ~aHG~aGi~~~L~~~~~~-----~---~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~G------i~~a  110 (228)
                      +.-|.+=.+.+|+..+..     .   .+++.++++.+|..++...  .+.              .|.+|      .+++
T Consensus       248 ~~~~agl~aAALA~Asrvf~d~~~~a~~~L~aA~~a~~fa~~~~~~--y~~--------------~g~~~~~De~~~~WA  311 (586)
T 3h7l_A          248 FRQGGGVAIAALAAASRLGVHGEYDQQKYRNAAENGYWHLKEHNTQ--YLN--------------DGEENIIDEYCALLA  311 (586)
T ss_dssp             GGGTHHHHHHHHHHHTTSSSCSSSCHHHHHHHHHHHHHHHHHHHHH--HST--------------TSCCCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhcccCCCCcChHHHHHHHHHHHHHHHhcCcc--ccC--------------CCCccchhHHHHHHH
Confidence            334544467777777654     2   2478889999998764210  011              12233      4799


Q ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHHHhCCC--------C-----CCccccCh-hhHHHH-HHHHHHHhCCHHHHHHHHHH
Q 027089          111 LAKAAEVFGEKEFLQAAVDAGEVVWKRGLL--------K-----RVGICHGI-SGNTYV-FLSLYRLTGNVEYLYRAKAF  175 (228)
Q Consensus       111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~lCHG~-aG~~~~-ll~l~~~~~~~~~~~~a~~~  175 (228)
                      .+++++.++++.|++.+....+.+..+-..        .     .-.+.|+. .|+..+ |+.+.+.++++.+.+++++.
T Consensus       312 A~eLy~ATgd~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~~~r~~~d~a~~gl~~iaLl~l~~~~~d~~~~~~a~~~  391 (586)
T 3h7l_A          312 SVELFKATKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAAEAGLPTIALCEYLAIEDDSVQTESVKCI  391 (586)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSSSSSBCCCTTTTTHHHHHHHHHHHHCCSTTTTHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhccCCccCCCcCCCcccCCcccccccccHHHHHHHHHhhhhcCChHHHHHHHHH
Confidence            999999999999999998766665432100        0     12344543 334333 55677888887677777666


Q ss_pred             HHHHHH
Q 027089          176 ACFLYD  181 (228)
Q Consensus       176 ~~~i~~  181 (228)
                      +..-.+
T Consensus       392 i~~~~d  397 (586)
T 3h7l_A          392 VNRACE  397 (586)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            554444

>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}

Probab=85.78  E-value=3.9  Score=35.35  Aligned_cols=83  Identities=16%  Similarity=0.057  Sum_probs=57.5

Q ss_pred             cccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCC----------------CCccccChhhHHHHHHHHHH
Q 027089           98 VHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLK----------------RVGICHGISGNTYVFLSLYR  161 (228)
Q Consensus        98 ~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~lCHG~aG~~~~ll~l~~  161 (228)
                      .-|.+|.  ++.++..++..++++.+++.|+++++.+.+.-...                ....|-..+=.+..+.. +.
T Consensus        50 ~l~~n~r--~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~-~~  126 (402)
T 3gt5_A           50 HLVSSTR--FVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSC-GL  126 (402)
T ss_dssp             EHHHHHH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHH-HH
T ss_pred             hHHHHHH--HHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHH-HH
Confidence            3455543  56666777777899999999999998876531111                11233334445556666 66


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHH
Q 027089          162 LTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       162 ~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      .|+++++++.|+++.+.+....
T Consensus       127 ~tgd~~~l~~A~~l~~~i~~~f  148 (402)
T 3gt5_A          127 KVGIKQAREWMDETWCLLERHF  148 (402)
T ss_dssp             HTTCTTHHHHHHHHHHHHHHHT
T ss_pred             HhCChhHHHHHHHHHHHHHHHh
Confidence            7999999999999988887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d2g0da1	409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	2e-39
d2g0da1	409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	6e-04
d2d5ja1	377	a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrola	5e-04

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score =  138 bits (347), Expect = 2e-39
 Identities = 39/236 (16%), Positives = 63/236 (26%), Gaps = 34/236 (14%)

Query: 14  VVDEIIKAGRRLANRGRC--------PLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDE 65
            +  + K    L +                   G    G AHGLAG+  +L    +K   
Sbjct: 165 FLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYS 224

Query: 66  V----EDVKGTLRYMIKNRF--------------PSGNYPSSEGSESDRLVHWCHGAPGV 107
                  ++  +    K                             S     WC+G PG+
Sbjct: 225 NEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGI 284

Query: 108 TLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL-LKRVGICHGISGNTYVFLSLYRLTGNV 166
           +L             F+  A    E   +R L +    ICHG SG   +     RL    
Sbjct: 285 SLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTK 344

Query: 167 EYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEAR 222
           ++    + F        ++       +G +      EGI G   +           
Sbjct: 345 KFDSYMEEFNVNSEQILEE-------YGDESGTGFLEGISGCILVLSKFEYSINFT 393

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 102 HGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVV---WKRGLLKRVGICHGISGNTYVFLS 158
            G PG+ L LA+       K + +   +  E +        L    +  G +G     L 
Sbjct: 35  TGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGAAGIALSILH 94

Query: 159 LYRLTGNVEYLYRAKAFACFLYDRAQKLIAE-GKMHGGDRPYSLFEGIGGMTHLFL 213
           L       +Y     +   ++    ++ I      +     Y + EG+ G+    L
Sbjct: 95  LREDDE--KYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLL 148

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Length = 377

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyl Hydrolase Family 88
domain: Unsaturated glucuronyl hydrolase
species: Bacillus sp. GL1 [TaxId: 84635]

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 17/138 (12%)

Query: 64  DEVEDVKGTLRYMIKNRFPS-----GNYPSSEGSESDRLVHWCHGA-PGVTLTLAKAAEV 117
           D +      L+    +RFP        Y  ++ ++      W  G   G+   L    E 
Sbjct: 8   DALGITARNLKKF-GDRFPHVSDGSNKYVLNDNTD------WTDGFWSGI---LWLCYEY 57

Query: 118 FGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTY-VFLSLYRLTGNVEYLYRAKAFA 176
            G++++ + AV       +R         H I         + + +  +      A   A
Sbjct: 58  TGDEQYREGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAA 117

Query: 177 CFLYDRAQKLIAEGKMHG 194
             L  R +      +  G
Sbjct: 118 DVLMRRWRADAGIIQAWG 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d2g0da1	409	Nisin biosynthesis protein NisC {Lactococcus lacti	99.97
d2g0da1	409	Nisin biosynthesis protein NisC {Lactococcus lacti	99.62
d2d5ja1	377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	96.72
d1nc5a_	363	Hypothetical protein YteR {Bacillus subtilis [TaxI	95.8
d2d5ja1	377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	94.81
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	94.13
d1nc5a_	363	Hypothetical protein YteR {Bacillus subtilis [TaxI	93.33
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	92.2
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	92.15
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	87.5
d2afaa1	411	Putative NAG isomerase YihS {Salmonella typhimuriu	86.62
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	84.79
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	81.49

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=3.3e-31  Score=234.01  Aligned_cols=182  Identities=20%  Similarity=0.247  Sum_probs=146.2

Q ss_pred             CccccccccchHHHHHHHHcccCC----CchHHHHHHHHHHHHHhcCC---CCCCCCCCC-----------CCCCccccc
Q 027089           39 GKKYWGAAHGLAGIMHVLMDMELK----PDEVEDVKGTLRYMIKNRFP---SGNYPSSEG-----------SESDRLVHW  100 (228)
Q Consensus        39 ~~~~~G~aHG~aGi~~~L~~~~~~----~~~~~~~~~~l~~l~~~~~~---~g~w~~~~~-----------~~~~~~~~W  100 (228)
                      +..++|||||.|||+++|++++..    +...+.++++++++.+.++.   ...||+.+.           +..+.+.+|
T Consensus       198 ~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~W  277 (409)
T d2g0da1         198 GCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAW  277 (409)
T ss_dssp             CBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCS
T ss_pred             CCCccchhhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHhhhccccCCCCCcCcccccccccccccCccccccc
Confidence            346899999999999999988642    23467888888888775552   335886532           123346899


Q ss_pred             ccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027089          101 CHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL  179 (228)
Q Consensus       101 C~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i  179 (228)
                      |||+|||+++++.+++.++|+++.+.+.++++.+++++.. .++|+|||.+|++++++.+++.++++++.+.+.++....
T Consensus       278 ChG~~Gi~la~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~LCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~  357 (409)
T d2g0da1         278 CYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNS  357 (409)
T ss_dssp             SSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCSCCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHHHTH
T ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCcccCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988765 579999999999999999999999999988887766555


Q ss_pred             HHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCC-CC----CCCCC
Q 027089          180 YDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE-AR----FPAYE  227 (228)
Q Consensus       180 ~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~-~~----~~~~~  227 (228)
                      .....       ......++|||+|.|||+++|+++.+|.+ +.    |.+||
T Consensus       358 ~~~~~-------~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~~~W~~~~L~~~  403 (409)
T d2g0da1         358 EQILE-------EYGDESGTGFLEGISGCILVLSKFEYSINFTYWRQALLLFD  403 (409)
T ss_dssp             HHHHH-------SCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCGGGGGTCCT
T ss_pred             HHhcc-------cCCCCCCCchhccHHHHHHHHHHhcCCCCCCCcchhhcccc
Confidence            44432       13345689999999999999999999987 33    55554

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=99.62  E-value=9.5e-15  Score=127.59  Aligned_cols=167  Identities=17%  Similarity=0.124  Sum_probs=114.9

Q ss_pred             cccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCC---CCCCCCCC-----------CCCcccccccCchH
Q 027089           41 KYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSG---NYPSSEGS-----------ESDRLVHWCHGAPG  106 (228)
Q Consensus        41 ~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g---~w~~~~~~-----------~~~~~~~WC~G~~G  106 (228)
                      .+..+-||.+|++.+|..++.... .+....+.+++.+......   .|.....+           ......+..||.+|
T Consensus       132 ~~~D~l~G~aG~~~~LL~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sG  210 (409)
T d2g0da1         132 PDYDVIEGLSGILSYLLLINDEQY-DDLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAG  210 (409)
T ss_dssp             HHHSSSSSHHHHHHHHTTCCCGGG-HHHHHHHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHH
T ss_pred             cccchhcccHHHHHHHHHhccccc-cHHHHHHHHHHHHHHHhcccccccccccccccccchhcccCCCCCccchhhhHHH
Confidence            345799999999999988865432 2334455555544222111   23221110           11235799999999


Q ss_pred             HHHHHHHHHHh-hCcHHHHHHHHHHHHHHHHhCC---------------------------CCCCccccChhhHHHHHHH
Q 027089          107 VTLTLAKAAEV-FGEKEFLQAAVDAGEVVWKRGL---------------------------LKRVGICHGISGNTYVFLS  158 (228)
Q Consensus       107 i~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~lCHG~aG~~~~ll~  158 (228)
                      |++++..++.. ..++...+.++++.+.+.+...                           ...++||||.+|++.+++.
T Consensus       211 i~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~  290 (409)
T d2g0da1         211 VGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLY  290 (409)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHhhhccccCCCCCcCcccccccccccccCcccccccCCCchHHHHHHHH
Confidence            99999988765 4567777777776655432100                           0126799999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCC
Q 027089          159 LYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP  218 (228)
Q Consensus       159 l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~  218 (228)
                      +++.++|+++.+.+.+..+.+..+..          ...+++||||.+|++.+++++++.
T Consensus       291 ~~~~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~~LCHG~aG~~~~l~~~~~~  340 (409)
T d2g0da1         291 GGLALDNDYFVDKAEKILESAMQRKL----------GIDSYMICHGYSGLIEICSLFKRL  340 (409)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHCT----------TCCSCCTTTSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcc----------CCCCCcccCcHHHHHHHHHHHHHH
Confidence            99999999999988887766654421          124789999999999999987753

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyl Hydrolase Family 88
domain: Unsaturated glucuronyl hydrolase
species: Bacillus sp. GL1 [TaxId: 84635]

Probab=96.72  E-value=0.022  Score=47.53  Aligned_cols=117  Identities=16%  Similarity=0.079  Sum_probs=81.2

Q ss_pred             chHHHHHHHHHHHHHhcC-CC-C---CCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC
Q 027089           64 DEVEDVKGTLRYMIKNRF-PS-G---NYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG  138 (228)
Q Consensus        64 ~~~~~~~~~l~~l~~~~~-~~-g---~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (228)
                      .+++.+.++.+.+.. ++ +. |   .|.... ........|+.+. ..+..++.+++.++|+++.+.+.+-.+.+.+.-
T Consensus       108 ~y~~~a~~~a~~L~~-r~~~~~g~~~~w~~~~-~~~~~~~~~iD~l-m~~~~l~~~~~~tgd~~y~~~A~~h~~~~~~~l  184 (377)
T d2d5ja1         108 SARKLALDAADVLMR-RWRADAGIIQAWGPKG-DPENGGRIIIDCL-LNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFL  184 (377)
T ss_dssp             HHHHHHHHHHHHHHT-TEETTTTEECCSSSTT-CTTTTTEEEGGGG-GGHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH-hcCcCCCccccCCCCC-CCCCCccchhhhh-hhHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHh
Confidence            356777777777764 43 22 2   243221 1112245789988 456667888999999999999987766654410


Q ss_pred             ----------------------------CCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          139 ----------------------------LLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       139 ----------------------------~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                                                  ...+.+++.|.+=.+.-+..+++.+++++|++.|+++++.++++.
T Consensus       185 ~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~~~l~~a~~~a~~~l~~~  257 (377)
T d2d5ja1         185 VRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARV  257 (377)
T ss_dssp             BBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCeEEEEEecCCCCcccCCCCCCCCCCcchHhhchHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhC
Confidence                                        001245777777788888889999999999999999999888664

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Hypothetical protein YteR
domain: Hypothetical protein YteR
species: Bacillus subtilis [TaxId: 1423]

Probab=95.80  E-value=0.022  Score=46.98  Aligned_cols=79  Identities=20%  Similarity=0.306  Sum_probs=54.3

Q ss_pred             cccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh-CC--CCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHH
Q 027089           98 VHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR-GL--LKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKA  174 (228)
Q Consensus        98 ~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~  174 (228)
                      ..|++|.  ...+++.+++.++|+++++.+++..+....+ +.  ......|.+.+|.  .++.+|+.|+|+.|++.+.+
T Consensus        29 W~W~~G~--~~~gl~~lye~Tgd~~y~~~a~~~~~~~~~~~g~~~~~~~~~d~~~~~~--~l~~ly~~Tgd~~y~~~a~~  104 (363)
T d1nc5a_          29 WHYHQGV--FLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAGL--ILFPLYEQTKDERYVKAAKR  104 (363)
T ss_dssp             CCHHHHH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHBCTTCCBCCCTTCGGGTGGGG--GHHHHHHHHCCHHHHHHHHH
T ss_pred             cCCchhH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHhccCCCccCCCCCCcchHHHH--HHHHHHHHcCcHHHHHHHHH
Confidence            3588764  3344577788999999999998877665332 11  1234455555553  56778999999999998887


Q ss_pred             HHHHHH
Q 027089          175 FACFLY  180 (228)
Q Consensus       175 ~~~~i~  180 (228)
                      +.+.+.
T Consensus       105 ~~~~l~  110 (363)
T d1nc5a_         105 LRSLYG  110 (363)
T ss_dssp             HHGGGG
T ss_pred             HHHhhc
Confidence            765543

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyl Hydrolase Family 88
domain: Unsaturated glucuronyl hydrolase
species: Bacillus sp. GL1 [TaxId: 84635]

Probab=94.81  E-value=0.6  Score=38.33  Aligned_cols=74  Identities=24%  Similarity=0.112  Sum_probs=56.3

Q ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHHHh-----C---CC--------CCCccccChhhHHHHHHHHHHHhCCHHHHHHH
Q 027089          109 LTLAKAAEVFGEKEFLQAAVDAGEVVWKR-----G---LL--------KRVGICHGISGNTYVFLSLYRLTGNVEYLYRA  172 (228)
Q Consensus       109 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~--------~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a  172 (228)
                      .+...+++.++|+++++.+..+.+.+...     +   ..        ....+|-+. .++.+|..+++.++|++|.+.|
T Consensus        95 ~s~~~~y~~Tgd~~y~~~a~~~a~~L~~r~~~~~g~~~~w~~~~~~~~~~~~~iD~l-m~~~~l~~~~~~tgd~~y~~~A  173 (377)
T d2d5ja1          95 LSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCL-LNLPLLLWAGEQTGDPEYRRVA  173 (377)
T ss_dssp             TTHHHHHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCTTTTTEEEGGGG-GGHHHHHHHHHHHCCHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcCCCccccCCCCCCCCCCccchhhhh-hhHHHHHHHHHhcCCHhHHHHH
Confidence            45667788899999999999988887542     0   00        013566666 5778889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027089          173 KAFACFLYDRA  183 (228)
Q Consensus       173 ~~~~~~i~~~~  183 (228)
                      .+.++.+++..
T Consensus       174 ~~h~~~~~~~l  184 (377)
T d2d5ja1         174 EAHALKSRRFL  184 (377)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            98887776653

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=94.13  E-value=1.2  Score=36.96  Aligned_cols=154  Identities=9%  Similarity=0.061  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCC-------------CC-------Cccccc-------------ccCchHHHHHHHH
Q 027089           67 EDVKGTLRYMIKNRFPSGNYPSSEGS-------------ES-------DRLVHW-------------CHGAPGVTLTLAK  113 (228)
Q Consensus        67 ~~~~~~l~~l~~~~~~~g~w~~~~~~-------------~~-------~~~~~W-------------C~G~~Gi~~al~~  113 (228)
                      +.++++.+.++..+.++|.||....-             +.       ....+|             ...++.-+.+|..
T Consensus        81 ~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~  160 (408)
T d1r76a_          81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ  160 (408)
T ss_dssp             HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHH
Confidence            45677788887767789999753210             00       000011             1246788888888


Q ss_pred             HHHhhCc---HHHHHHHHHHHHHHHHhCCCC-----CCccc-----------cChhhHHHHHHHHHHHhCC---------
Q 027089          114 AAEVFGE---KEFLQAAVDAGEVVWKRGLLK-----RVGIC-----------HGISGNTYVFLSLYRLTGN---------  165 (228)
Q Consensus       114 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~lC-----------HG~aG~~~~ll~l~~~~~~---------  165 (228)
                      ++..+++   +++++.+.++++.++.....+     ..-+.           |....++.+|..+++..++         
T Consensus       161 ~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r  240 (408)
T d1r76a_         161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR  240 (408)
T ss_dssp             HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred             HHHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHH
Confidence            8887654   569999999999998754310     01112           3445677777777776554         


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-hhc---------CCC-C---CCCCccccccc-hHHHHHHHHHccCCCC
Q 027089          166 VEYLYRAKAFACFLYDRAQKL-IAE---------GKM-H---GGDRPYSLFEG-IGGMTHLFLDMIEPSE  220 (228)
Q Consensus       166 ~~~~~~a~~~~~~i~~~~~~~-~~~---------g~~-~---~~~~~~gl~~G-~aGi~~~Ll~l~~~~~  220 (228)
                      ++....+++..++|+...... .+.         ..+ +   ...+.+++..+ ++||..+|+++.+|+.
T Consensus       241 ~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~  310 (408)
T d1r76a_         241 TRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSD  310 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCCh
Confidence            444555666666676654332 010         011 1   12345778877 7899999999988753

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Hypothetical protein YteR
domain: Hypothetical protein YteR
species: Bacillus subtilis [TaxId: 1423]

Probab=93.33  E-value=0.16  Score=41.42  Aligned_cols=74  Identities=12%  Similarity=0.033  Sum_probs=55.1

Q ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHHHhC------CC-----CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027089          109 LTLAKAAEVFGEKEFLQAAVDAGEVVWKRG------LL-----KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFAC  177 (228)
Q Consensus       109 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~  177 (228)
                      ++++.+++.++|+++++.+..+.+.+....      +.     .+..+|-+..=+..++..+++.|+|++|++.|.+-..
T Consensus        84 ~~l~~ly~~Tgd~~y~~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~~wiD~l~M~~p~l~~~~~~tgd~~y~d~a~~~~~  163 (363)
T d1nc5a_          84 LILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLDGLYMGGPFALKYANLKQETELFDQVVLQES  163 (363)
T ss_dssp             GGHHHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTTSTTEEETHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhhccCCCCCCCceeccCCCCCCeeeeecCCcHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            456778899999999998887776553321      10     1245787887788899999999999999999877665


Q ss_pred             HHHHH
Q 027089          178 FLYDR  182 (228)
Q Consensus       178 ~i~~~  182 (228)
                      ...++
T Consensus       164 ~~~~~  168 (363)
T d1nc5a_         164 LMRKH  168 (363)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=92.20  E-value=2.3  Score=34.18  Aligned_cols=133  Identities=14%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             hHHHHHHHHcccCCCc--hHHHHHHHHHHHHHhcCCCCCCCCCCCCC----------CCcccccccCchHHHHHHHHHHH
Q 027089           49 LAGIMHVLMDMELKPD--EVEDVKGTLRYMIKNRFPSGNYPSSEGSE----------SDRLVHWCHGAPGVTLTLAKAAE  116 (228)
Q Consensus        49 ~aGi~~~L~~~~~~~~--~~~~~~~~l~~l~~~~~~~g~w~~~~~~~----------~~~~~~WC~G~~Gi~~al~~~~~  116 (228)
                      .+..+.+|..+....+  ..+.+++.++|+.+.+.++|.|..-....          .+...-.-+..+.+....+....
T Consensus       100 Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~  179 (352)
T d2sqca1         100 TAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFG  179 (352)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHHHH
Confidence            4556666665543332  35678999999998788889886422110          00000011233444444444444


Q ss_pred             hhCcHHHHHHHHHHHHHHHHhCCC-----CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089          117 VFGEKEFLQAAVDAGEVVWKRGLL-----KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA  183 (228)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~  183 (228)
                      ..+.++..+.++++++.+.+....     ....-|| ..|...++..+. ..+.+.....+++..+++++..
T Consensus       180 ~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~~~~-~y~t~~~l~aL~-~~g~~~~~~~v~ka~~~L~~~Q  249 (352)
T d2sqca1         180 SFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNY-LYGTGAVVSALK-AVGIDTREPYIQKALDWVEQHQ  249 (352)
T ss_dssp             TTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSBSSH-HHHHHHHHHHHH-HTTCCTTSHHHHHHHHHHHHTC
T ss_pred             hcCCchhhHHHHHHHHHHHhccCCCCCccccCCCCc-chHHHHHHHHHH-hcccccchHHHHHHHHHHHhcc
Confidence            455556667788888877664321     2234444 233444433333 3443333344555566666553

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=92.15  E-value=0.26  Score=41.19  Aligned_cols=115  Identities=12%  Similarity=0.124  Sum_probs=75.6

Q ss_pred             hHHHHHHHHcccCC------CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc-----cCchHHHHHHHHHHHh
Q 027089           49 LAGIMHVLMDMELK------PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC-----HGAPGVTLTLAKAAEV  117 (228)
Q Consensus        49 ~aGi~~~L~~~~~~------~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC-----~G~~Gi~~al~~~~~~  117 (228)
                      .+.-+.+|++++..      ..+.+.+.+.++|+++.++++|.||...+...  .+..+     +.+..++-.+..+.+.
T Consensus       151 Tt~el~~La~~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~--~Y~~~ItfND~~m~~~l~~l~~~~~~  228 (408)
T d1r76a_         151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEG--GYHDAITYNDDALVHVAELLSDIAAG  228 (408)
T ss_dssp             THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCC--GGGGSEECGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCc--ccccccccCchHHHHHHHHHHHHHHh
Confidence            57888888888742      12678899999999998999999986432111  11111     4555666656666655


Q ss_pred             hCc---------HHHHHHHHHHHHHHHHhCCC-------------------------CCCccccC-hhhHHHHHHHHHHH
Q 027089          118 FGE---------KEFLQAAVDAGEVVWKRGLL-------------------------KRVGICHG-ISGNTYVFLSLYRL  162 (228)
Q Consensus       118 ~~~---------~~~~~~~~~~~~~~~~~~~~-------------------------~~~~lCHG-~aG~~~~ll~l~~~  162 (228)
                      .++         ++..+.++++++++++....                         ..+++|-+ .+|++.+|+.+++-
T Consensus       229 ~~~~~~~~~~~r~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~p  308 (408)
T d1r76a_         229 RDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAP  308 (408)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSC
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCC
Confidence            443         66777888888998775321                         12455555 77888888777765


Q ss_pred             hCC
Q 027089          163 TGN  165 (228)
Q Consensus       163 ~~~  165 (228)
                      +++
T Consensus       309 s~~  311 (408)
T d1r76a_         309 SDA  311 (408)
T ss_dssp             CHH
T ss_pred             Chh
Confidence            554

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=87.50  E-value=0.95  Score=36.41  Aligned_cols=123  Identities=13%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             hHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC--cccccccC-chHHHHHHHHHHH------
Q 027089           49 LAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHG-APGVTLTLAKAAE------  116 (228)
Q Consensus        49 ~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~--~~~~WC~G-~~Gi~~al~~~~~------  116 (228)
                      ....+.+|++++..   ..+.+.+.+.++|+++.|+++|.||.-......  ...-+... +.+++-.+-....      
T Consensus        68 T~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nGGWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~  147 (324)
T d1gxma_          68 TITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFD  147 (324)
T ss_dssp             THHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCCCccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchh
Confidence            46677788888753   335789999999999989999999864221111  11223333 3333332222221      


Q ss_pred             --hhC---cHHHHHHHHHHHHHHHHhCCC-------------------------CCCccccC-hhhHHHHHHHHHHHhCC
Q 027089          117 --VFG---EKEFLQAAVDAGEVVWKRGLL-------------------------KRVGICHG-ISGNTYVFLSLYRLTGN  165 (228)
Q Consensus       117 --~~~---~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~lCHG-~aG~~~~ll~l~~~~~~  165 (228)
                        .+.   +++..+.++++++.+++....                         ..+++|-+ .+|++.+|+..+   ..
T Consensus       148 ~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg~Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~~LM~~~---~s  224 (324)
T d1gxma_         148 TDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQP---QT  224 (324)
T ss_dssp             STTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSC---CC
T ss_pred             HHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhhhccCcccccccccccccChhhhhhhHHHHHHHHhhcC---Cc
Confidence              122   357777888888888764210                         13677777 678888887644   34


Q ss_pred             HHHHHHHHH
Q 027089          166 VEYLYRAKA  174 (228)
Q Consensus       166 ~~~~~~a~~  174 (228)
                      ++..+.+..
T Consensus       225 ~~i~~ai~~  233 (324)
T d1gxma_         225 AEIEQAVRA  233 (324)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            554444433

>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: Putative NAG isomerase YihS
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.62  E-value=1  Score=37.07  Aligned_cols=132  Identities=19%  Similarity=0.106  Sum_probs=80.1

Q ss_pred             HHHHHHHHcccC--CCchHHHHHHHHHHHHHhcC-C-CCCCCCCCCCCC-CcccccccCchHHHHHHHHHHHhhCcHHHH
Q 027089           50 AGIMHVLMDMEL--KPDEVEDVKGTLRYMIKNRF-P-SGNYPSSEGSES-DRLVHWCHGAPGVTLTLAKAAEVFGEKEFL  124 (228)
Q Consensus        50 aGi~~~L~~~~~--~~~~~~~~~~~l~~l~~~~~-~-~g~w~~~~~~~~-~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~  124 (228)
                      +=++++++..+.  .+++++.++..++|+.+... . .|.|.....+.. .....-||+-+=+++++..+++ +++++..
T Consensus        53 aR~~~~fs~a~~~g~~~~~~~A~~g~~fL~~~~~d~~~Gg~~~~~~~~~~~d~~k~~Y~~AF~l~ala~~~~-~g~~~~~  131 (411)
T d2afaa1          53 ARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVT-TGHPEAR  131 (411)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHTTTTTBCTTTSSBCSEECSSSEEECCEEHHHHHHHHHHHHHHHT-TTCTTHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcCCCCeEEEeecCCCCcccchhhHHHHHHHHHHHHHHH-hCCHHHH
Confidence            335666666653  45678999999999986433 2 344443222111 1223346666667788888776 5677778


Q ss_pred             HHHHHHHHHHHHhCC-------C----CCCccc---cC---hhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089          125 QAAVDAGEVVWKRGL-------L----KRVGIC---HG---ISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR  182 (228)
Q Consensus       125 ~~~~~~~~~~~~~~~-------~----~~~~lC---HG---~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~  182 (228)
                      +.+.+..+.+.+.-.       .    .+..-.   .+   ..=.++.++.+++++++++|++++..+++.+.++
T Consensus       132 ~~a~~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~mhl~eA~~~l~~at~d~~~~~~a~~~~~~~~~~  206 (411)
T d2afaa1         132 KLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHD  206 (411)
T ss_dssp             HHHHHHHHHHHHHTEETTTTEECCEECTTSCCBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhhCccCCCchhhcccccCCcccccccChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence            888877766654210       0    000000   11   1224567778899999999999999887776544

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.79  E-value=0.84  Score=38.42  Aligned_cols=90  Identities=9%  Similarity=0.060  Sum_probs=54.1

Q ss_pred             ccccchHHHHHHHHcccCCC---chHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchH----HHHHHHHHHH
Q 027089           44 GAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPG----VTLTLAKAAE  116 (228)
Q Consensus        44 G~aHG~aGi~~~L~~~~~~~---~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~G----i~~al~~~~~  116 (228)
                      .+-+|.+-++.+|.......   ...+.++++++|+.+.+..+|.|......  .....+..|.+.    .+++++.+..
T Consensus       300 ~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s--~~~~~~~~~~~s~~~~TAwAl~aL~~  377 (448)
T d1w6ka1         300 CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFES--CEERRYVQSAQSQIHNTCWAMMGLMA  377 (448)
T ss_dssp             SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHH--HHHTSCCBCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCcc--ccCcccCCCCCCcHHHHHHHHHHHHh
Confidence            46777888888888887643   23567899999999888889999753210  011223444333    3455555543


Q ss_pred             hhCcHHHHHHHHHHHHHHHHh
Q 027089          117 VFGEKEFLQAAVDAGEVVWKR  137 (228)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~  137 (228)
                      .- + .-.+.++++++.+.+.
T Consensus       378 ag-~-~~~~~v~rgv~~L~~~  396 (448)
T d1w6ka1         378 VR-H-PDIEAQERGVRCLLEK  396 (448)
T ss_dssp             TT-C-SCHHHHHHHHHHHHHH
T ss_pred             cC-C-CCcHHHHHHHHHHHHc
Confidence            32 1 1134566777777664

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=81.49  E-value=3.8  Score=32.82  Aligned_cols=70  Identities=11%  Similarity=0.213  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 027089            9 AQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPS   88 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~   88 (228)
                      +-|++.++.|++.++...++         .+....++..|.+-++.+|..+.... ..+.++++++|+.+.+.++|.|-.
T Consensus       188 ~~I~kav~~L~~~Q~~dG~w---------~~~~~~~~~y~t~~~l~aL~~~g~~~-~~~~v~ka~~~L~~~Q~~dGgWg~  257 (352)
T d2sqca1         188 KVIRRAVEYLKREQKPDGSW---------FGRWGVNYLYGTGAVVSALKAVGIDT-REPYIQKALDWVEQHQNPDGGWGE  257 (352)
T ss_dssp             HHHHHHHHHHHHHCCTTSCC---------CCSSBSSHHHHHHHHHHHHHHTTCCT-TSHHHHHHHHHHHHTCCTTSCCCC
T ss_pred             HHHHHHHHHHHhccCCCCCc---------cccCCCCcchHHHHHHHHHHhccccc-chHHHHHHHHHHHhccCCCCCccc
Confidence            34566666666665444322         12222344445555666666665432 235688999999987888999964