Citrus Sinensis ID: 027099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MAMAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mamavegggTLSEIYQSAKKLLLRARDGVEKLerlesststggydspelsfAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGrangesshiLRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR
Flexible Loop (DISEMBL)
mamavegggtlSEIYQSAKKLLLRARDGVeklerlesststggydspeLSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAEllgrangesshiLRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKAldvlntvglsnsvlrlierrnrvdtwikyvGMVSTVVILYFFWRWTR
Low Complexity Region (SEG)
MAMAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR
Disordered region (IsUnstruct)
*************************************************SFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKR******************YFL****************************I*********************FATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW**
Disordered Region (DISOPRED)
************EIYQSAKKL*LR*********************************SQIQSLCVE***********************VAEEAESLKESLDK*************************************************LQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR
Disordered Region (DISEMBL)
********GTLSEIYQSAKKLLLRARDGVEKLE***********DSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR
Disordered Region (DISPRO)
*A*****GGTLSEIYQSAKKLLLRARDGVEKLERLESS*STGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQxxxxxxxxxxxxxxxxxxxxxxxxxxxxNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9SJL6	225	Membrin-11 OS=Arabidopsis	yes	no	0.964	0.977	0.709	2e-90
Q9FK28	219	Membrin-12 OS=Arabidopsis	no	no	0.960	1.0	0.676	3e-84
O35166	212	Golgi SNAP receptor compl	yes	no	0.627	0.674	0.319	3e-12
O35165	212	Golgi SNAP receptor compl	yes	no	0.758	0.816	0.297	4e-12
A8XP14	212	Probable Golgi SNAP recep	N/A	no	0.907	0.976	0.271	8e-12
P41941	213	Probable Golgi SNAP recep	yes	no	0.925	0.990	0.251	3e-10
O14653	212	Golgi SNAP receptor compl	yes	no	0.618	0.665	0.309	4e-08
Q9VRL2	216	Probable Golgi SNAP recep	yes	no	0.780	0.824	0.310	4e-08
Q9P7G5	235	Protein transport protein	yes	no	0.600	0.582	0.266	1e-06
Q6BZQ6	226	Protein transport protein	yes	no	0.293	0.296	0.328	0.0002

>sp|Q9SJL6|MEM11_ARATH Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1

 Score =  331 bits (849), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/224 (70%), Positives = 194/224 (86%), Gaps = 4/224 (1%)

Query: 5   VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLC 64
           VEGGG+LS++Y SAK++LL+ARDG+E+LER ESS+     DSP+L+ +VK+DI++++SLC
Sbjct: 6   VEGGGSLSDVYSSAKRILLKARDGIERLERFESSS----MDSPDLASSVKRDITEVRSLC 61

Query: 65  VEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGR 124
             MD LWRSI  KSQRDLW+RK EQV EEAE L  SL+KY  RNQR++ EA+ERA+LLGR
Sbjct: 62  SNMDTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGR 121

Query: 125 ANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDV 184
           A+GE +HIL+IFDEEAQAM SV+NS RML+ESF++G AIL+KYAEQR+ LK AQRKALDV
Sbjct: 122 ASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDV 181

Query: 185 LNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           LNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct: 182 LNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 225

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK28|MEM12_ARATH Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1

 Score =  311 bits (796), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 153/226 (67%), Positives = 185/226 (81%), Gaps = 7/226 (3%)

Query: 3   MAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQS 62
           MA    G LSE+Y SAK++LLRAR+G+EKLER +S       D  +L+ +VK+DI+++QS
Sbjct: 1   MASGTVGGLSEVYSSAKRILLRARNGIEKLERFDS-------DPTDLASSVKRDITEVQS 53

Query: 63  LCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELL 122
           LC  MD LWRSI  KSQRDLW+RK EQV EEAE L +SL+KY  RNQR++ EA+ERA+LL
Sbjct: 54  LCSNMDGLWRSIPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERADLL 113

Query: 123 GRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKAL 182
           GR +GE +HIL+IFDEEAQ M SV+NS RML++SF +G AIL+KYAEQR+ LK AQRKAL
Sbjct: 114 GRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQRKAL 173

Query: 183 DVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           DVLNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct: 174 DVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 219

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.

Arabidopsis thaliana (taxid: 3702)

>sp|O35166|GOSR2_MOUSE Golgi SNAP receptor complex member 2 OS=Mus musculus GN=Gosr2 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 1/144 (0%)

Query: 84  KRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRA-NGESSHILRIFDEEAQA 142
           K +V+Q+  + + L+ +L  +  R Q R  + R+R ELL R      S      DE  Q 
Sbjct: 67  KLRVDQLKYDVQHLQTALRNFQHRRQVREQQERQRDELLSRTFTTNDSDTTIPMDESLQF 126

Query: 143 MQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRN 202
             S+ N    + +    G +IL     QR  LK  Q+K LD+ N +GLSN+V+RLIE+R 
Sbjct: 127 NSSLHNIHHGMDDLIGGGHSILEGLRAQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRA 186

Query: 203 RVDTWIKYVGMVSTVVILYFFWRW 226
             D +    GM+ T  +++   ++
Sbjct: 187 FQDKYFMIGGMLLTCAVMFLVVQY 210

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|O35165|GOSR2_RAT Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2 PE=1 SV=2

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 53  VKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRI 112
           ++  I QI S  +E   +  S    ++R   K +V+Q+  + + L+ +L  +  R Q + 
Sbjct: 37  IQASIDQIFS-HLERLEILSSKEPPNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRQAKE 95

Query: 113 NEARERAELLGRA-NGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQR 171
            + R+R ELL R      S      DE  Q   S++N    + +    G +IL     QR
Sbjct: 96  QQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLQNIHHGMDDLIGGGHSILEGLRAQR 155

Query: 172 EHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW 226
             LK  Q+K LD+ N +GLSN+V+RLIE+R   D +    GM+ T  +++   ++
Sbjct: 156 LTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMFLVVQY 210

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.

Rattus norvegicus (taxid: 10116)

>sp|A8XP14|GOSR2_CAEBR Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis briggsae GN=gosr-2.1 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 7/214 (3%)

Query: 15  YQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSI 74
           YQS   LL + +  + +LE  ++       D+  +  ++  DIS ++     +D  + S 
Sbjct: 5   YQSTNFLLQKVQHDLGRLEGTQNEQ-----DAQVVVQSIYGDISTLKDNLQALDN-YVSR 58

Query: 75  AAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILR 134
              ++R   + +V+Q+  + + +  ++     R  +R   A ER ELL      +   L 
Sbjct: 59  EQPARRQAARMRVDQLRMDVQRVDMAVSAVHTRMTQRWRSASEREELLSARYRPNDTALS 118

Query: 135 IFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSV 194
           I D E Q    + +S   L E  + G+A+L     Q   L+   RK  D+   +GLSNS 
Sbjct: 119 IGDHELQLNDRLHSSHNRLDELISQGSAVLDNLKSQHFSLRGVSRKMHDIGQALGLSNST 178

Query: 195 LRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           L++I+RR R D WI  +G +   + +Y F+R+ R
Sbjct: 179 LQVIDRRVRED-WIFVIGCIVCCIFMYAFYRFWR 211

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.

Caenorhabditis briggsae (taxid: 6238)

>sp|P41941|GOSR2_CAEEL Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis elegans GN=gosr-2.1 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 8/219 (3%)

Query: 11  LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRL 70
           +  +YQS   LL + +  + +LE  ++       D+  +   +  D+  ++  C  +D  
Sbjct: 1   MEALYQSTNFLLQKVQHDLGRLEGTQNEQ-----DAQVVVQCIYGDVITLKENCQTLDN- 54

Query: 71  WRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESS 130
           + S    ++R   + +V+Q+  +   +  ++     R  +R   A ER ELL      + 
Sbjct: 55  YVSREPPARRQAARMRVDQLRADVHRVDMAVSAVHTRMTQRWRAATERDELLRTRYRPND 114

Query: 131 HILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGL 190
             L I D E      +++S   L +  + G+A+L     Q  +L+   RK  ++   +GL
Sbjct: 115 TALSIGDHELLLNDRLQSSHTHLDDLISQGSAVLENLKSQHLNLRGVGRKMHEIGQALGL 174

Query: 191 SNSVLRLIERRNRVDTWIKYV-GMVSTVVILYFFWRWTR 228
           SNS L++I+RR R D WI +V G +   + +Y F+R+ R
Sbjct: 175 SNSTLQVIDRRVRED-WILFVIGCIVCCIFMYAFYRFWR 212

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.

Caenorhabditis elegans (taxid: 6239)

>sp|O14653|GOSR2_HUMAN Golgi SNAP receptor complex member 2 OS=Homo sapiens GN=GOSR2 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 86  KVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRA-NGESSHILRIFDEEAQAMQ 144
           +V+Q+  + + L+ +L  +  R   R  + R+R ELL R      S      DE  Q   
Sbjct: 69  RVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPMDESLQFNS 128

Query: 145 SVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRV 204
           S++     + +    G  IL     QR  LK  Q+K LD+ N +GLSN+V+RLIE+R   
Sbjct: 129 SLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQ 188

Query: 205 DTWIKYVGMVSTVVILYFFWRW 226
           D +    GM+ T V+++   ++
Sbjct: 189 DKYFMIGGMLLTCVVMFLVVQY 210

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q9VRL2|GOSR2_DROME Probable Golgi SNAP receptor complex member 2 OS=Drosophila melanogaster GN=membrin PE=2 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 45  DSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKY 104
           +S ++   ++  I+Q  + C  +D L   +   SQR   K +V+Q+  +   L+ SL   
Sbjct: 29  ESLDVENGIQLKITQANANCDRLDVLLYKVPP-SQRQSSKLRVDQLKYDLRHLQTSLQTA 87

Query: 105 FLRNQRRINEARERAELLGR---ANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATG 160
             R QRR+ E  ER +LL     AN       R+  D E Q    + N+ R + +  A+G
Sbjct: 88  RERRQRRMQEISEREQLLNHRFTANSAQPEETRLQLDYELQHHTQLGNAHRGVDDMIASG 147

Query: 161 TAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTV--- 217
           + IL     QR  L  A ++   + +T+GLSN  ++LIERR   D  I   G+V T+   
Sbjct: 148 SGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLII 207

Query: 218 -VILYFF 223
            +I+YF 
Sbjct: 208 ALIIYFL 214

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.

Drosophila melanogaster (taxid: 7227)

>sp|Q9P7G5|BOS1_SCHPO Protein transport protein bos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bos1 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 28/165 (16%)

Query: 83  WKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQA 142
           +++K  Q+ E+ + LK  +        R I +A+ R ELLGR  G  + +   +      
Sbjct: 80  FRQKHVQLLEKFDELKAHV--------RDIAQAKNRKELLGR-RGYVNSLDSPYGNSTTD 130

Query: 143 MQSVRNSSRM-------------------LQESFATGTAILAKYAEQREHLKKAQRKALD 183
            + V   S +                   + E    G  IL    EQ   LK  + K L+
Sbjct: 131 AEIVEGPSDLSRQDGLLKEHDFLGRAESQVDEFLERGRMILGDLVEQGSVLKATKTKVLN 190

Query: 184 VLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
             NT+G++   L LI RR++ D  I Y G     V+ Y  +RW R
Sbjct: 191 AANTLGITRHTLSLINRRSKQDKIIFYCGAFLVFVLFYLIYRWLR 235

SNARE required for targeting and fusion of ER-derived transport vesicles with the Golgi complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6BZQ6|BOS1_YARLI Protein transport protein BOS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BOS1 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 160 GTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVI 219
           G A L    EQ + L+   +K   V  T+GLS   ++++E+R R D    Y G+V  +V 
Sbjct: 158 GMAALGDLQEQSDILRSTGKKMRSVAETLGLSRETIKMVEKRARQDKRFFYGGIVFMLVC 217

Query: 220 LYFFWRW 226
            Y+  +W
Sbjct: 218 FYYILKW 224

SNARE required for protein transport between the ER and the Golgi complex.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
255569468	229	membrin, putative [Ricinus communis] gi|	1.0	0.995	0.794	1e-101
225439199	224	PREDICTED: membrin-11 [Vitis vinifera] g	0.969	0.986	0.793	3e-97
224123864	225	predicted protein [Populus trichocarpa]	0.960	0.973	0.789	1e-96
449462766	228	PREDICTED: membrin-11-like [Cucumis sati	0.969	0.969	0.797	2e-95
15228050	225	golgi SNAP receptor complex member 2 [Ar	0.964	0.977	0.709	1e-88
297827197	225	MEMB11 [Arabidopsis lyrata subsp. lyrata	0.964	0.977	0.700	5e-88
388492978	230	unknown [Medicago truncatula]	0.969	0.960	0.725	4e-84
356567466	225	PREDICTED: membrin-11-like [Glycine max]	0.960	0.973	0.728	3e-83
297795843	219	MEMB12 [Arabidopsis lyrata subsp. lyrata	0.960	1.0	0.676	7e-83
363807367	228	uncharacterized protein LOC100803902 [Gl	0.964	0.964	0.713	1e-82

>gi|255569468|ref|XP_002525701.1| membrin, putative [Ricinus communis] gi|223535001|gb|EEF36684.1| membrin, putative [Ricinus communis]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/229 (79%), Positives = 206/229 (89%), Gaps = 1/229 (0%)

Query: 1   MAMAVEG-GGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQ 59
           MAMA+EG GGTLSEI+QS+KK LLRARDG+E+LERLE+STS GG DSPELSFAVKKDISQ
Sbjct: 1   MAMAIEGEGGTLSEIFQSSKKALLRARDGIERLERLENSTSNGGLDSPELSFAVKKDISQ 60

Query: 60  IQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERA 119
           IQSLC E+DRLWRSIAAK QRDLWKRKVEQVAEEAESLK+SLD+YF RNQRR  EA+ERA
Sbjct: 61  IQSLCAELDRLWRSIAAKPQRDLWKRKVEQVAEEAESLKQSLDRYFSRNQRRTREAQERA 120

Query: 120 ELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQR 179
           ELLGRANGES+H+LRIFDEEAQAMQ+V NS  M++ES +TG AIL KY+EQR+ LK AQR
Sbjct: 121 ELLGRANGESAHVLRIFDEEAQAMQAVHNSKSMMEESLSTGYAILYKYSEQRQRLKNAQR 180

Query: 180 KALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           KALDVLNTVGLSNSVLRLIERR+RVD WIKYVGM+ T+ ++YF   W+R
Sbjct: 181 KALDVLNTVGLSNSVLRLIERRSRVDRWIKYVGMLITLALMYFLVSWSR 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439199|ref|XP_002275569.1| PREDICTED: membrin-11 [Vitis vinifera] gi|296085896|emb|CBI31220.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/223 (79%), Positives = 202/223 (90%), Gaps = 2/223 (0%)

Query: 5   VEGGGT-LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSL 63
           +EGGGT  SEIYQ++KKLLLR RDG+E+LERLE S+S    DSPEL+FAVKKDISQIQSL
Sbjct: 1   MEGGGTTFSEIYQNSKKLLLRTRDGLERLERLEFSSSNP-VDSPELAFAVKKDISQIQSL 59

Query: 64  CVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLG 123
           CVEMDRLWRSI+AKSQRDLWKRKVEQVAEE+ESLKESLDKYFLR+Q+R+ EA+ERAELLG
Sbjct: 60  CVEMDRLWRSISAKSQRDLWKRKVEQVAEESESLKESLDKYFLRHQKRMMEAKERAELLG 119

Query: 124 RANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALD 183
           RANG+S+H+LRIFDEEAQAMQS RNSS ML+E+++ G AIL KYA+QR+ LK A RKALD
Sbjct: 120 RANGDSAHVLRIFDEEAQAMQSARNSSMMLEEAYSKGVAILTKYADQRDRLKGAHRKALD 179

Query: 184 VLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW 226
           VLNTVGLSNSVL+LIERRNRVD WIKY GMV +VV+LY FWRW
Sbjct: 180 VLNTVGLSNSVLKLIERRNRVDKWIKYTGMVVSVVVLYTFWRW 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123864|ref|XP_002319183.1| predicted protein [Populus trichocarpa] gi|118486425|gb|ABK95052.1| unknown [Populus trichocarpa] gi|222857559|gb|EEE95106.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/219 (78%), Positives = 197/219 (89%)

Query: 7   GGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVE 66
           GGGTLSEIYQSAKKLL+RA+DG+E+LERLE+STS+GG DSPELSF VKKDISQ+ SLC +
Sbjct: 4   GGGTLSEIYQSAKKLLMRAQDGIERLERLENSTSSGGLDSPELSFVVKKDISQVLSLCAD 63

Query: 67  MDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRAN 126
           MDRLWRS+ AK QRDLW+RKVE VAEEA SLKESLD+YF RNQRR+ EA+ERAELLGRAN
Sbjct: 64  MDRLWRSVQAKPQRDLWRRKVELVAEEAGSLKESLDRYFARNQRRMKEAQERAELLGRAN 123

Query: 127 GESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLN 186
           G+S+H+LRIFDEEAQAMQSV NS RML +S +TG AIL+KY+EQRE LK+AQRKALDVLN
Sbjct: 124 GDSAHVLRIFDEEAQAMQSVHNSKRMLADSISTGAAILSKYSEQRERLKRAQRKALDVLN 183

Query: 187 TVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWR 225
           TVGLSN+VLRLIERRNR D WIKY GM+ T+VILYF  R
Sbjct: 184 TVGLSNAVLRLIERRNRFDRWIKYFGMLITLVILYFLVR 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462766|ref|XP_004149111.1| PREDICTED: membrin-11-like [Cucumis sativus]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 206/222 (92%), Gaps = 1/222 (0%)

Query: 7   GGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVE 66
           GGGTLSEIYQSAK+LLLR RDG+EKLERLE S ++G  DSPELSF++KKDI+QIQSLCVE
Sbjct: 8   GGGTLSEIYQSAKRLLLRTRDGLEKLERLEYSAASG-MDSPELSFSIKKDITQIQSLCVE 66

Query: 67  MDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRAN 126
           MDRLWRSIAAKSQRDLWKRKVEQVAEEA+S+K+SLDKYFLRNQ+R+ EA+ERAELLGRA+
Sbjct: 67  MDRLWRSIAAKSQRDLWKRKVEQVAEEADSMKQSLDKYFLRNQKRMTEAKERAELLGRAS 126

Query: 127 GESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLN 186
           G+S+HILRIFD+EAQAM SVRNSSRML+E+ ATG AIL KY+EQR+ LK+AQRKALDVLN
Sbjct: 127 GDSAHILRIFDDEAQAMNSVRNSSRMLEEASATGEAILFKYSEQRDRLKRAQRKALDVLN 186

Query: 187 TVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           TVGLSNSVL+LIERR+RVD WIKY GM+ T+V+++FF RW R
Sbjct: 187 TVGLSNSVLKLIERRHRVDNWIKYAGMILTIVVVFFFVRWVR 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228050|ref|NP_181227.1| golgi SNAP receptor complex member 2 [Arabidopsis thaliana] gi|11132470|sp|Q9SJL6.1|MEM11_ARATH RecName: Full=Membrin-11; Short=AtMEMB11; AltName: Full=27 kDa Golgi SNARE protein; AltName: Full=Golgi SNAP receptor complex member 2-1 gi|4883606|gb|AAD31575.1| putative cis-Golgi SNARE protein [Arabidopsis thaliana] gi|17380684|gb|AAL36172.1| putative cis-Golgi SNARE protein [Arabidopsis thaliana] gi|20259147|gb|AAM14289.1| putative cis-Golgi SNARE protein [Arabidopsis thaliana] gi|21592458|gb|AAM64409.1| putative cis-Golgi SNARE protein [Arabidopsis thaliana] gi|330254224|gb|AEC09318.1| golgi SNAP receptor complex member 2 [Arabidopsis thaliana]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/224 (70%), Positives = 194/224 (86%), Gaps = 4/224 (1%)

Query: 5   VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLC 64
           VEGGG+LS++Y SAK++LL+ARDG+E+LER ESS+     DSP+L+ +VK+DI++++SLC
Sbjct: 6   VEGGGSLSDVYSSAKRILLKARDGIERLERFESSS----MDSPDLASSVKRDITEVRSLC 61

Query: 65  VEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGR 124
             MD LWRSI  KSQRDLW+RK EQV EEAE L  SL+KY  RNQR++ EA+ERA+LLGR
Sbjct: 62  SNMDTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGR 121

Query: 125 ANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDV 184
           A+GE +HIL+IFDEEAQAM SV+NS RML+ESF++G AIL+KYAEQR+ LK AQRKALDV
Sbjct: 122 ASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDV 181

Query: 185 LNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           LNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct: 182 LNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827197|ref|XP_002881481.1| MEMB11 [Arabidopsis lyrata subsp. lyrata] gi|297327320|gb|EFH57740.1| MEMB11 [Arabidopsis lyrata subsp. lyrata]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 157/224 (70%), Positives = 194/224 (86%), Gaps = 4/224 (1%)

Query: 5   VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLC 64
           V GGG+LS++Y SAK++LL+ARDG+E+LER ESS+     DSP+L+ +VK+DI++++SLC
Sbjct: 6   VGGGGSLSDVYSSAKRILLKARDGIERLERFESSS----MDSPDLASSVKRDITEVRSLC 61

Query: 65  VEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGR 124
             MD LWRSI  KSQRDLW+RK EQV EEAE L +SL+KY  RNQR++ EA+ERA+LLGR
Sbjct: 62  SNMDALWRSIPVKSQRDLWRRKTEQVGEEAEYLNQSLEKYMSRNQRKMLEAKERADLLGR 121

Query: 125 ANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDV 184
           A+GE +HIL+I+DEEAQAM SV+NS RML+ESF++G AIL+KYAEQR+ LK AQRKALDV
Sbjct: 122 ASGEGAHILQIYDEEAQAMNSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDV 181

Query: 185 LNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           LNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct: 182 LNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492978|gb|AFK34555.1| unknown [Medicago truncatula]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 187/226 (82%), Gaps = 5/226 (2%)

Query: 7   GGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTG----GYDSPELSFAVKKDISQIQS 62
           GGGTLSE++QSAKKLLLR RDG+E+LERLE STST     G DS ELSF+ K+DI+QIQS
Sbjct: 6   GGGTLSEVHQSAKKLLLRCRDGLERLERLEHSTSTSAAAVGVDS-ELSFSAKRDINQIQS 64

Query: 63  LCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELL 122
           LCVEMDRLWRS+AAK QRDLWKRKVEQ+AEEAESLKESLDKY  R+Q+R  EA+ERAELL
Sbjct: 65  LCVEMDRLWRSLAAKPQRDLWKRKVEQIAEEAESLKESLDKYNSRSQKRSREAKERAELL 124

Query: 123 GRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKAL 182
           GR NG+SSH+L+IFD++AQAM SVR+SS+ L+ + A G AIL     QRE LK AQRKAL
Sbjct: 125 GRMNGDSSHVLQIFDDDAQAMHSVRSSSKELENANALGEAILFSMHGQRERLKSAQRKAL 184

Query: 183 DVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           DVLNTVG+SN VLRLIERRNRVD WIKY GM+ TVV L  F  W R
Sbjct: 185 DVLNTVGISNRVLRLIERRNRVDQWIKYAGMLLTVVFLLAFVMWRR 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567466|ref|XP_003551940.1| PREDICTED: membrin-11-like [Glycine max]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 187/221 (84%), Gaps = 2/221 (0%)

Query: 7   GGGTLSEIYQSAKKLLLRARDGVEKLE-RLESSTSTGGYDSPELSFAVKKDISQIQSLCV 65
           GGGTLSEI+QSAKKLLLR+RDG+E+LE    ++ +  G DS ELSFAVKKDI+QIQSLCV
Sbjct: 4   GGGTLSEIHQSAKKLLLRSRDGLERLEYSAPAAAAVSGADS-ELSFAVKKDITQIQSLCV 62

Query: 66  EMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRA 125
           EMDRLWRSIAAK QRDLWKRKVEQ+AEEAESL+ SLDKY LRNQ+R+ EA ERAELLGRA
Sbjct: 63  EMDRLWRSIAAKPQRDLWKRKVEQIAEEAESLRASLDKYNLRNQKRMREANERAELLGRA 122

Query: 126 NGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVL 185
           NG+S+H+LRI+DEEAQA+QSVR+SS+ L+ + A G AIL+    QRE LK A RKALD+L
Sbjct: 123 NGDSAHVLRIYDEEAQALQSVRSSSQELENANALGEAILSSIHGQRERLKSAHRKALDIL 182

Query: 186 NTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW 226
           NTVG+SNSVLRLIERRNRVD WIKY GM+ TV+ L  F  W
Sbjct: 183 NTVGISNSVLRLIERRNRVDQWIKYAGMLLTVIFLLAFIMW 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795843|ref|XP_002865806.1| MEMB12 [Arabidopsis lyrata subsp. lyrata] gi|297311641|gb|EFH42065.1| MEMB12 [Arabidopsis lyrata subsp. lyrata]

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 153/226 (67%), Positives = 186/226 (82%), Gaps = 7/226 (3%)

Query: 3   MAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQS 62
           MA    G LSE+Y SAK++LLRARDG+E+LER +S       D  +LS +VK+DI+++QS
Sbjct: 1   MASGTMGGLSEVYSSAKRILLRARDGIERLERFDS-------DPTDLSSSVKRDITEVQS 53

Query: 63  LCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELL 122
           LC  MD LWRSI  K+QRDLW+RK EQV EEAE L +SL+KY  RNQR++ EA+ERA+LL
Sbjct: 54  LCSNMDGLWRSIPVKAQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERADLL 113

Query: 123 GRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKAL 182
           GR +GE +HIL+IFDEEAQ M SV+NS RML++SF +G AIL+KYAEQR+ LK+AQRKAL
Sbjct: 114 GRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKRAQRKAL 173

Query: 183 DVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
           DVLNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct: 174 DVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807367|ref|NP_001242121.1| uncharacterized protein LOC100803902 [Glycine max] gi|255636977|gb|ACU18821.1| unknown [Glycine max]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/223 (71%), Positives = 185/223 (82%), Gaps = 3/223 (1%)

Query: 7   GGGTLSEIYQSAKKLLLRARDGVEKLERLE---SSTSTGGYDSPELSFAVKKDISQIQSL 63
           GGGTLSEI+QSAKKLLLR+RDG+E+LERLE   ++ +       ELSFAVKKDI+QIQ+L
Sbjct: 4   GGGTLSEIHQSAKKLLLRSRDGLERLERLEYSAAAGAAFSGADSELSFAVKKDITQIQTL 63

Query: 64  CVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLG 123
           CVEMDRLWRSIAAK QRDLWKRKVEQ+AEEAESL+ SLDKY LRNQ+R+ EA ER ELLG
Sbjct: 64  CVEMDRLWRSIAAKPQRDLWKRKVEQIAEEAESLRASLDKYNLRNQKRMREANERTELLG 123

Query: 124 RANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALD 183
           RANG+S+H+LRI+DEEAQA+QSVR+SSR L+ + A G AIL+    QRE LK A RKALD
Sbjct: 124 RANGDSAHVLRIYDEEAQALQSVRSSSRELENANALGEAILSSIHGQRERLKSAHRKALD 183

Query: 184 VLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW 226
           +LNTV +SNSVLRLIERRNRVD WIKY GM+  VV L+ F  W
Sbjct: 184 ILNTVEISNSVLRLIERRNRVDQWIKYAGMLLAVVFLFAFIMW 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2057946	225	MEMB11 "AT2G36900" [Arabidopsi	0.964	0.977	0.709	5.8e-82
TAIR|locus:2177512	219	MEMB12 "AT5G50440" [Arabidopsi	0.960	1.0	0.675	1.1e-76
DICTYBASE|DDB_G0268452	270	DDB_G0268452 "v-SNARE family p	0.916	0.774	0.307	1e-20
UNIPROTKB|E1BXT3	212	GOSR2 "Uncharacterized protein	0.732	0.787	0.337	2e-17
ZFIN|ZDB-GENE-030131-3290	212	gosr2 "golgi SNAP receptor com	0.714	0.768	0.321	1.1e-16
MGI|MGI:1927204	212	Gosr2 "golgi SNAP receptor com	0.894	0.962	0.273	8.8e-15
FB|FBgn0260856	216	membrin "membrin" [Drosophila	0.837	0.884	0.299	1.8e-14
RGD|62079	212	Gosr2 "golgi SNAP receptor com	0.736	0.792	0.305	4.9e-14
UNIPROTKB|O35165	212	Gosr2 "Golgi SNAP receptor com	0.736	0.792	0.305	4.9e-14
WB|WBGene00007128	213	memb-1 [Caenorhabditis elegans	0.925	0.990	0.251	6.2e-14

TAIR|locus:2057946 MEMB11 "AT2G36900" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 159/224 (70%), Positives = 194/224 (86%)

Query:     5 VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLC 64
             VEGGG+LS++Y SAK++LL+ARDG+E+LER ESS+     DSP+L+ +VK+DI++++SLC
Sbjct:     6 VEGGGSLSDVYSSAKRILLKARDGIERLERFESSSM----DSPDLASSVKRDITEVRSLC 61

Query:    65 VEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGR 124
               MD LWRSI  KSQRDLW+RK EQV EEAE L  SL+KY  RNQR++ EA+ERA+LLGR
Sbjct:    62 SNMDTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGR 121

Query:   125 ANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDV 184
             A+GE +HIL+IFDEEAQAM SV+NS RML+ESF++G AIL+KYAEQR+ LK AQRKALDV
Sbjct:   122 ASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDV 181

Query:   185 LNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
             LNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct:   182 LNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 225

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

TAIR|locus:2177512 MEMB12 "AT5G50440" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 154/228 (67%), Positives = 186/228 (81%)

Query:     1 MAMAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQI 60
             MA    GG  LSE+Y SAK++LLRAR+G+EKLER +S       D  +L+ +VK+DI+++
Sbjct:     1 MASGTVGG--LSEVYSSAKRILLRARNGIEKLERFDS-------DPTDLASSVKRDITEV 51

Query:    61 QSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAE 120
             QSLC  MD LWRSI  KSQRDLW+RK EQV EEAE L +SL+KY  RNQR++ EA+ERA+
Sbjct:    52 QSLCSNMDGLWRSIPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERAD 111

Query:   121 LLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRK 180
             LLGR +GE +HIL+IFDEEAQ M SV+NS RML++SF +G AIL+KYAEQR+ LK AQRK
Sbjct:   112 LLGRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQRK 171

Query:   181 ALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
             ALDVLNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct:   172 ALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 219

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0045088 "regulation of innate immune response" evidence=IMP

GO:0050708 "regulation of protein secretion" evidence=IMP

GO:0005801 "cis-Golgi network" evidence=IDA

DICTYBASE|DDB_G0268452 DDB_G0268452 "v-SNARE family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 72/234 (30%), Positives = 119/234 (50%)

Query:     8 GGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEM 67
             G  L ++Y+ A KLL   R+    LE LE+ T T      +LS     +I+Q+  L  ++
Sbjct:    48 GSGLDDLYKQANKLLFSIRND---LETLETGTDTSVIIQSKLS----TNINQLSRLSDQI 100

Query:    68 DRLWRSIAAKSQRDLWK------------RKVEQVAEEAESLKESLDKYFLRNQRRINEA 115
             D +  S    ++R++W+            RKV+Q+ EE++SL++SLD +     ++  E 
Sbjct:   101 DGMV-SNEPIAKREIWRILLIIIKKLKNFRKVKQLVEESKSLRKSLDMFLQTKYKKQMEE 159

Query:   116 RERAELLGRAN-GESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHL 174
              E+ +L+GR   GESS I  +  E     + + + +  L      G +I+     Q   L
Sbjct:   160 EEKNKLMGRRKAGESSAIGNLMKEN----KHLNDGNSTLDSLTEMGNSIIYNLVGQNSKL 215

Query:   175 KKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
             K   +K  D+ NT+GLS SV++ I+RR   D  I Y GMV  ++I++  W + R
Sbjct:   216 KGVNKKIYDIANTLGLSRSVIQRIKRRQHQDKVIVYSGMVIVLIIVFLLWYFFR 269

GO:0006810 "transport" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

UNIPROTKB|E1BXT3 GOSR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 59/175 (33%), Positives = 100/175 (57%)

Query:    53 VKKDI-SQIQSLCVEMDRLWRSIAAK---SQRDLWKRKVEQVAEEAESLKESLDKYFLRN 108
             V+ +I ++I  +   ++RL   +++K   ++R   K +V+Q+  + + L+ +L  +  R 
Sbjct:    33 VENEIQARIDKVFSNLERL-EILSSKEPPNKRQNAKLRVDQLKYDVQHLQTALRNFQHRR 91

Query:   109 QRRINEARERAELLGRA--NGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAK 166
               R  + R+R ELL R     +S   + I DE  Q  +S++N+ R + +   +GT IL  
Sbjct:    92 YIREQQERQREELLARTFTTNDSDTTIPI-DETLQFNESLQNAHRGMDDLIGSGTNILQG 150

Query:   167 YAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILY 221
               +QR  LK  Q+K LDV NT+GLSN+V+RLIE+R   D +    GM+ T VI++
Sbjct:   151 LRDQRVTLKGTQKKILDVANTLGLSNTVMRLIEKRAFQDKYFMIGGMIVTCVIMF 205

GO:0005795 "Golgi stack" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

ZFIN|ZDB-GENE-030131-3290 gosr2 "golgi SNAP receptor complex member 2" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 54/168 (32%), Positives = 95/168 (56%)

Query:    58 SQIQSLCVEMDRLWRSIAAK---SQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINE 114
             ++I  +  +++RL   +A+K   ++R   K +V+Q+  + + L+ +L  +  R      +
Sbjct:    39 ARIDQIFNQLERL-EILASKEPPNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRYAHEAQ 97

Query:   115 ARERAELLGRANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREH 173
              RER ELL R+   +     I  DE  Q   S++N+ R + +   +G++IL    +QR  
Sbjct:    98 EREREELLSRSFTTNDADTSIPIDETLQFNSSLQNAHRGMDDLLGSGSSILNGLRDQRST 157

Query:   174 LKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILY 221
             LK   +K LDV N +GLSN+V+RLIE+R   D +I   GM++T V+++
Sbjct:   158 LKGTHKKMLDVANMLGLSNTVMRLIEKRASQDKFIMMAGMLATCVVMF 205

GO:0005795 "Golgi stack" evidence=IEA

GO:0006810 "transport" evidence=IEA

MGI|MGI:1927204 Gosr2 "golgi SNAP receptor complex member 2" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 58/212 (27%), Positives = 103/212 (48%)

Query:    11 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRL 70
             +  +YQ   K +   +  + +LER +   S    ++ E+  ++++  S ++ L      +
Sbjct:     1 MEPLYQQTNKQVQEIQSHMGRLERADKQ-SVHLVEN-EIQASIEQIFSHLERL-----EI 53

Query:    71 WRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESS 130
               S    ++R   K +V+Q+  + + L+ +L  +  R Q R  + R+R ELL R    + 
Sbjct:    54 LSSKEPLNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRQVREQQERQRDELLSRTFTTND 113

Query:   131 HILRI-FDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVG 189
                 I  DE  Q   S+ N    + +    G +IL     QR  LK  Q+K LD+ N +G
Sbjct:   114 SDTTIPMDESLQFNSSLHNIHHGMDDLIGGGHSILEGLRAQRLTLKGTQKKILDIANMLG 173

Query:   190 LSNSVLRLIERRNRVDTWIKYVGMVSTVVILY 221
             LSN+V+RLIE+R   D +    GM+ T  +++
Sbjct:   174 LSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMF 205

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IDA

FB|FBgn0260856 membrin "membrin" [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 59/197 (29%), Positives = 97/197 (49%)

Query:    29 VEKLER-LESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKV 87
             V+ +ER  +  +     +S ++   ++  I+Q  + C  +D L   +   SQR   K +V
Sbjct:    12 VKDIERDFQRLSQLSAQESLDVENGIQLKITQANANCDRLDVLLYKVPP-SQRQSSKLRV 70

Query:    88 EQVAEEAESLKESLDKYFLRNQRRINEARERAELLGR---ANGESSHILRI-FDEEAQAM 143
             +Q+  +   L+ SL     R QRR+ E  ER +LL     AN       R+  D E Q  
Sbjct:    71 DQLKYDLRHLQTSLQTARERRQRRMQEISEREQLLNHRFTANSAQPEETRLQLDYELQHH 130

Query:   144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNR 203
               + N+ R + +  A+G+ IL     QR  L  A ++   + +T+GLSN  ++LIERR  
Sbjct:   131 TQLGNAHRGVDDMIASGSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLV 190

Query:   204 VDTWIKYVGMVSTVVIL 220
              D  I   G+V T++I+
Sbjct:   191 EDRRIFIGGVVVTLLII 207

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0005795 "Golgi stack" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007430 "terminal branching, open tracheal system" evidence=IMP

GO:0060439 "trachea morphogenesis" evidence=IMP

RGD|62079 Gosr2 "golgi SNAP receptor complex member 2" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 52/170 (30%), Positives = 86/170 (50%)

Query:    53 VKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRI 112
             ++  I QI S    ++ L  S    ++R   K +V+Q+  + + L+ +L  +  R Q + 
Sbjct:    37 IQASIDQIFSHLERLEIL-SSKEPPNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRQAKE 95

Query:   113 NEARERAELLGRANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQR 171
              + R+R ELL R    +     I  DE  Q   S++N    + +    G +IL     QR
Sbjct:    96 QQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLQNIHHGMDDLIGGGHSILEGLRAQR 155

Query:   172 EHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILY 221
               LK  Q+K LD+ N +GLSN+V+RLIE+R   D +    GM+ T  +++
Sbjct:   156 LTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMF 205

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0005795 "Golgi stack" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA;ISO

UNIPROTKB|O35165 Gosr2 "Golgi SNAP receptor complex member 2" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 52/170 (30%), Positives = 86/170 (50%)

Query:    53 VKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRI 112
             ++  I QI S    ++ L  S    ++R   K +V+Q+  + + L+ +L  +  R Q + 
Sbjct:    37 IQASIDQIFSHLERLEIL-SSKEPPNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRQAKE 95

Query:   113 NEARERAELLGRANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQR 171
              + R+R ELL R    +     I  DE  Q   S++N    + +    G +IL     QR
Sbjct:    96 QQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLQNIHHGMDDLIGGGHSILEGLRAQR 155

Query:   172 EHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILY 221
               LK  Q+K LD+ N +GLSN+V+RLIE+R   D +    GM+ T  +++
Sbjct:   156 LTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMF 205

GO:0005795 "Golgi stack" evidence=IEA

WB|WBGene00007128 memb-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 55/219 (25%), Positives = 104/219 (47%)

Query:    11 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRL 70
             +  +YQS   LL + +  + +LE  ++       D+  +   +  D+  ++  C  +D  
Sbjct:     1 MEALYQSTNFLLQKVQHDLGRLEGTQNEQ-----DAQVVVQCIYGDVITLKENCQTLDN- 54

Query:    71 WRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESS 130
             + S    ++R   + +V+Q+  +   +  ++     R  +R   A ER ELL      + 
Sbjct:    55 YVSREPPARRQAARMRVDQLRADVHRVDMAVSAVHTRMTQRWRAATERDELLRTRYRPND 114

Query:   131 HILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGL 190
               L I D E      +++S   L +  + G+A+L     Q  +L+   RK  ++   +GL
Sbjct:   115 TALSIGDHELLLNDRLQSSHTHLDDLISQGSAVLENLKSQHLNLRGVGRKMHEIGQALGL 174

Query:   191 SNSVLRLIERRNRVDTWIKYV-GMVSTVVILYFFWRWTR 228
             SNS L++I+RR R D WI +V G +   + +Y F+R+ R
Sbjct:   175 SNSTLQVIDRRVRED-WILFVIGCIVCCIFMYAFYRFWR 212

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJL6	MEM11_ARATH	No assigned EC number	0.7098	0.9649	0.9777	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	9e-13

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 61.1 bits (149), Expect = 9e-13
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 137 DEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLR 196
           +   +    ++NS R+  E+ + G AIL     QRE LK+A+ K  +  N +G SNS LR
Sbjct: 1   ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLR 60

Query: 197 LIERRN 202
           LI RR 
Sbjct: 61  LINRRR 66

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	100.0
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	100.0
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	100.0
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.57
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.56
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	99.22
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.47
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	98.19
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	97.14
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	97.11
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	96.98
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	96.29
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	96.1
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	95.41
PRK10884	206	SH3 domain-containing protein; Provisional	94.33
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	93.9
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	93.49
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	93.09
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	92.46
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	91.62
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	91.6
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	91.41
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	90.84
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	90.66
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	90.32
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	90.14
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	89.75
PF06024	101	DUF912: Nucleopolyhedrovirus protein of unknown fu	89.56
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	89.35
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	89.24
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	88.62
PRK14750	29	kdpF potassium-transporting ATPase subunit F; Prov	86.93
PF08802	39	CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit	85.96
PF12911	56	OppC_N: N-terminal TM domain of oligopeptide trans	85.82
PHA03164	88	hypothetical protein; Provisional	83.48
COG3937	108	Uncharacterized conserved protein [Function unknow	83.31
PF05283	186	MGC-24: Multi-glycosylated core protein 24 (MGC-24	82.47
PF04799	171	Fzo_mitofusin: fzo-like conserved region; InterPro	81.92
PRK10884	206	SH3 domain-containing protein; Provisional	81.63
PF11395	43	DUF2873: Protein of unknown function (DUF2873); In	81.44
PF14937	86	DUF4500: Domain of unknown function (DUF4500)	80.98
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	80.92

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-41  Score=273.36  Aligned_cols=212  Identities=39%  Similarity=0.580  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHH
Q 027099           11 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQV   90 (228)
Q Consensus        11 ~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~   90 (228)
                      |++||+++++...+++.+|.++++....     .+...++..+...|.++...|+.|+..+++.|| +.|+....+++++
T Consensus         1 m~~ly~~t~~~~~k~q~~l~rlE~~~~~-----~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp-~~rq~~rlr~dQl   74 (213)
T KOG3251|consen    1 MDALYQSTNRQLDKLQRGLIRLERTIKT-----QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPP-KSRQAARLRVDQL   74 (213)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHccccc-----cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCC-CcHHHHHHHHHHH
Confidence            6899999999999999999999987553     267899999999999999999999999999999 5566666679999


Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCCCCChhhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099           91 AEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHIL-RIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAE  169 (228)
Q Consensus        91 r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl~~~~~~~~~~~-~~~d~~~~~~~~L~~s~~~lde~~~~g~~~l~~L~~  169 (228)
                      ++|++.++..+++...++.++.....+|++||++.++++++.. .++|.+++++++|.+|++++|+++.+|.+|+++|.+
T Consensus        75 ~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~~~~D~el~~~d~l~~s~~~lDd~l~~G~~ile~l~~  154 (213)
T KOG3251|consen   75 LEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTSIPFDEELQENDSLKRSHNMLDDLLESGSAILENLVE  154 (213)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888899999999999887755443 348999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 027099          170 QREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR  228 (228)
Q Consensus       170 Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~~~~~  228 (228)
                      ||.+|++|++|+++++++||.|+.+|+.|+||.+.||+|||||+++||+++|++|||||
T Consensus       155 Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~wlr  213 (213)
T KOG3251|consen  155 QRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRWLR  213 (213)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999986

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-34  Score=233.02  Aligned_cols=207  Identities=18%  Similarity=0.235  Sum_probs=179.2

Q ss_pred             CHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHH
Q 027099           10 TLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQ   89 (228)
Q Consensus        10 ~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~   89 (228)
                      -|+..-+|+..|.++|+.+++++..++++      +++.++++|+..+++++++++||+.+|++.|| +.|..+..|++.
T Consensus         4 ~fe~yEqqy~~l~a~it~k~~~~~~~~~~------ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~-~~Rs~~~~KlR~   76 (220)
T KOG1666|consen    4 LFEGYEQQYRELSAEITKKIGRALSLPGS------EKKQLLSEIDSKLEEANELLDQMDLEVRELPP-NFRSSYLSKLRE   76 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhcCCch------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc-hhhhHHHHHHHH
Confidence            47777889999999999999999877533      88999999999999999999999999999999 789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCCCCC-----hhh---hchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099           90 VAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGES-----SHI---LRIFDEEAQAMQSVRNSSRMLQESFATGT  161 (228)
Q Consensus        90 ~r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl~~~~~~~-----~~~---~~~~d~~~~~~~~L~~s~~~lde~~~~g~  161 (228)
                      |+.++..+++++++...    ......+|+++++....++     +++   ....+...+..++|..|+|.+.||+++|.
T Consensus        77 yksdl~~l~~e~k~~~~----~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~  152 (220)
T KOG1666|consen   77 YKSDLKKLKRELKRTTS----RNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGS  152 (220)
T ss_pred             HHHHHHHHHHHHHHhhc----cccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999752    2234567888876654331     211   11234444567899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-h
Q 027099          162 AILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW-T  227 (228)
Q Consensus       162 ~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~~~-~  227 (228)
                      +|+++|++||++|.+++.+|+++++++|.|+++|+.|.||..++||++++++++++++|++++|| |
T Consensus       153 ~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf  219 (220)
T KOG1666|consen  153 EILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKF  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999988 5

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-32  Score=222.87  Aligned_cols=214  Identities=18%  Similarity=0.199  Sum_probs=173.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhHHHhhhhhcCC--------C-C--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027099            5 VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESST--------S-T--GGYDSPELSFAVKKDISQIQSLCVEMDRLWRS   73 (228)
Q Consensus         5 ~~~~~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~--------~-~--~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~   73 (228)
                      |.+.++|++|++||+++|++++.+|.+|+++.+.+        + .  ++-..+.+..+|+..|+++++++|+|...+. 
T Consensus         1 m~~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~-   79 (231)
T KOG3208|consen    1 MGSSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCAS-   79 (231)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhcc-
Confidence            56788999999999999999999999999986541        1 1  2224578899999999999999999998333 


Q ss_pred             hchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCCCCC-hhh----hchhHHHHHHHHHHHH
Q 027099           74 IAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGES-SHI----LRIFDEEAQAMQSVRN  148 (228)
Q Consensus        74 ~~~~s~r~~~~~rv~~~r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl~~~~~~~-~~~----~~~~d~~~~~~~~L~~  148 (228)
                      .|.  --......+.+|++.|++|.++|++++.    .....++|+.|++.+..+. ...    ....+..++|+.+|++
T Consensus        80 s~a--~~aa~~htL~RHrEILqdy~qef~rir~----n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~e~~lkE~~~in~  153 (231)
T KOG3208|consen   80 SPA--NSAAVMHTLQRHREILQDYTQEFRRIRS----NIDAKRERESLLESVRADISSYPSASGFNRGEMYLKEHDHINN  153 (231)
T ss_pred             CCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhccCCccCCCchHHHHHHHhccccc
Confidence            332  1234455789999999999999999865    4667889999998765431 111    1123455789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 027099          149 SSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW  226 (228)
Q Consensus       149 s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~~~  226 (228)
                      +.+.+|++++||++|.++|..||.+|++++.|+.++++.+|..|.+|.+|++|.++|.+|+. +|+.+|++|+++||+
T Consensus       154 s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa-~Vis~C~llllfy~~  230 (231)
T KOG3208|consen  154 SIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILA-AVISVCTLLLLFYWI  230 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999994 555555555555543

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.57  E-value=2e-14  Score=98.33  Aligned_cols=66  Identities=35%  Similarity=0.435  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhh
Q 027099          137 DEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRN  202 (228)
Q Consensus       137 d~~~~~~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~  202 (228)
                      |.+.+++++|++|.+++++++++|.+|+++|..||++|+++++|+.++++.+|.|+++|+.|.||.
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            356678899999999999999999999999999999999999999999999999999999999984

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.56  E-value=7.3e-14  Score=101.81  Aligned_cols=84  Identities=14%  Similarity=0.297  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 027099          142 AMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILY  221 (228)
Q Consensus       142 ~~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~~~~i~~~~~~i~  221 (228)
                      .++.|.+++++|.+.+++|..+++.|.+|.++|..+++++.++.+.++.|+++++.|+||..+||+|+++++++||++++
T Consensus         6 vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~   85 (92)
T PF03908_consen    6 VTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVL   85 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 027099          222 FFWR  225 (228)
Q Consensus       222 ~i~~  225 (228)
                      ||+|
T Consensus        86 yI~~   89 (92)
T PF03908_consen   86 YILW   89 (92)
T ss_pred             HHhh
Confidence            8886

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=99.22  E-value=1.2e-10  Score=82.27  Aligned_cols=79  Identities=23%  Similarity=0.364  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHH
Q 027099           18 AKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESL   97 (228)
Q Consensus        18 a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l   97 (228)
                      +..+..+|..+++.+....+      ++++.+..+|+..|+++.++|++|+.++++.|+ +.|..++.||+.|+.++..+
T Consensus         1 f~~l~~~i~~~l~~~~~~~~------~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-s~r~~~~~kl~~yr~~l~~l   73 (79)
T PF05008_consen    1 FQALTAEIKSKLERIKNLSG------EQRKSLIREIERDLDEAEELLKQMELEVRSLPP-SERNQYKSKLRSYRSELKKL   73 (79)
T ss_dssp             HHHHHHHHHHHHHHGGGS-C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999986533      378999999999999999999999999999987 99999999999999999999


Q ss_pred             HHHHHH
Q 027099           98 KESLDK  103 (228)
Q Consensus        98 ~~~~~~  103 (228)
                      +++|++
T Consensus        74 k~~l~~   79 (79)
T PF05008_consen   74 KKELKK   79 (79)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999964

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=0.00032  Score=60.23  Aligned_cols=211  Identities=14%  Similarity=0.189  Sum_probs=132.7

Q ss_pred             HHHHHHHHHH---HhhHHHhhhhhcCCCC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-h--HHHHHHH
Q 027099           16 QSAKKLLLRA---RDGVEKLERLESSTST---GGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKS-Q--RDLWKRK   86 (228)
Q Consensus        16 ~~a~~l~~ei---~~~l~~l~~~~~~~~~---~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s-~--r~~~~~r   86 (228)
                      ..|.++=.+|   -.+|++|..++...+.   -.-+-.++---|+.+|.-+..-|-++.........-+ +  ....+..
T Consensus        45 ~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~v  124 (311)
T KOG0812|consen   45 KKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNV  124 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHH
Confidence            3444444444   4556666555432110   0013345666778888888888877777664322212 1  3556778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCCCC-------C---------------hhhh-----------
Q 027099           87 VEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGE-------S---------------SHIL-----------  133 (228)
Q Consensus        87 v~~~r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl~~~~~~-------~---------------~~~~-----------  133 (228)
                      |-.+..-+...-++|+...--......+.++|.+.|..++.+       +               ++..           
T Consensus       125 V~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~  204 (311)
T KOG0812|consen  125 VVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDS  204 (311)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCC
Confidence            888888888888888877654444456777899998764211       0               0000           


Q ss_pred             -ch-------h---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHh
Q 027099          134 -RI-------F---DEEAQAM-QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERR  201 (228)
Q Consensus       134 -~~-------~---d~~~~~~-~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR  201 (228)
                       .+       +   |...+++ ..+++....+.|+-++=.++-.....|.++++++..-+.+++-.++.+.+.|.++--|
T Consensus       205 ~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~  284 (311)
T KOG0812|consen  205 SNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFER  284 (311)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHH
Confidence             00       0   0011111 4455556666666666666666778999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 027099          202 NRVDTWIKYVGMVSTVVILYFFWRWT  227 (228)
Q Consensus       202 ~~~dk~I~~~~i~~~~~~i~~i~~~~  227 (228)
                      ...++|+++=++.+ +++||++|++|
T Consensus       285 vSSNRwLmvkiF~i-~ivFflvfvlf  309 (311)
T KOG0812|consen  285 VSSNRWLMVKIFGI-LIVFFLVFVLF  309 (311)
T ss_pred             hccchHHHHHHHHH-HHHHHHHHHHh
Confidence            99999999544433 34444444444

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=0.0027  Score=53.71  Aligned_cols=193  Identities=15%  Similarity=0.104  Sum_probs=125.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-----hh
Q 027099            5 VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAK-----SQ   79 (228)
Q Consensus         5 ~~~~~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~-----s~   79 (228)
                      ++...+|-..|..+.++..+++..+.+.+.+....   +++.+..-..+++.+.+.-+-++..-..+...|..     ..
T Consensus         2 ~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~---~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~E   78 (235)
T KOG3202|consen    2 LSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDT---GSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFE   78 (235)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHH
Confidence            46678899999999999999999999988764320   11334444444445544444444444444444431     11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCCCCC-hhh---hchhH---HH-------HHH-HH
Q 027099           80 RDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGES-SHI---LRIFD---EE-------AQA-MQ  144 (228)
Q Consensus        80 r~~~~~rv~~~r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl~~~~~~~-~~~---~~~~d---~~-------~~~-~~  144 (228)
                      -+.=+..+.+.+..+...+..|....      ..+...|..|++....++ ...   ....|   ..       .++ -+
T Consensus        79 l~~R~~~i~~lr~q~~~~~~~~~~~~------~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe  152 (235)
T KOG3202|consen   79 LSRRRRFIDNLRTQLRQMKSKMAMSG------FANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDE  152 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc------cccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence            11112346677777777777775511      112234788886544331 110   00111   11       122 27


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhh
Q 027099          145 SVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDT  206 (228)
Q Consensus       145 ~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk  206 (228)
                      .|+..+..+..+-.+|..+=+.|..|...|..-...+-.+.+.+....+-+.++.+...+..
T Consensus       153 ~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~  214 (235)
T KOG3202|consen  153 GLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCS  214 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888888888999999999999999999999999999999999999999999999444444

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=97.14  E-value=0.13  Score=43.92  Aligned_cols=65  Identities=8%  Similarity=0.084  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 027099          156 SFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYF  222 (228)
Q Consensus       156 ~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~  222 (228)
                      .-+.+...-..|.....+|..+...+..-.+.++..+.=+..+.++...  |++|+.+++.+++|++
T Consensus       179 LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~  243 (251)
T PF09753_consen  179 LKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIM  243 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH
Confidence            3445555666788888899999998888888888888888888655444  6665544443333333

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.16  Score=44.18  Aligned_cols=208  Identities=15%  Similarity=0.141  Sum_probs=112.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHhhhhh---cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---hh---chhh
Q 027099            8 GGTLSEIYQSAKKLLLRARDGVEKLERLE---SSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWR---SI---AAKS   78 (228)
Q Consensus         8 ~~~~~~L~~~a~~l~~ei~~~l~~l~~~~---~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~---~~---~~~s   78 (228)
                      |+-|-+...+.......++.++..|.+..   ..|+-+  +...-+.+|+..=.+..+++........   ..   ++++
T Consensus        56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~--Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~  133 (305)
T KOG0809|consen   56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFS--DKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPS  133 (305)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChH
Confidence            77899999999999999999999988763   223211  1122234444444444444433333333   22   2446


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH-HHhcCC----CCCCChhhhchhHHHH--HHHHHHHH---
Q 027099           79 QRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARER-AELLGR----ANGESSHILRIFDEEA--QAMQSVRN---  148 (228)
Q Consensus        79 ~r~~~~~rv~~~r~el~~l~~~~~~~~~~~~~~~~~~~~R-~eLl~~----~~~~~~~~~~~~d~~~--~~~~~L~~---  148 (228)
                      ++-..+.-...+-..|+.+-.+||...++-.+......++ .+++..    ...+++..  ..+...  +..-.+++   
T Consensus       134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d--~~~~~~qe~ql~~~e~~~~  211 (305)
T KOG0809|consen  134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDED--FSDRTFQEQQLMLFENNEE  211 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhh--hhhhhHHHHHHHHHhcchH
Confidence            6555555566788888888899988776555444322222 122211    11111100  000000  00111111   


Q ss_pred             --------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 027099          149 --------SSRM---LQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTV  217 (228)
Q Consensus       149 --------s~~~---lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~~~~i~~~~  217 (228)
                              ...+   +-|..++=...=....+|...+.++.=-+.++.-.+..+.+=|.+.++-.++++-..+.+|+++|
T Consensus       212 ~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~  291 (305)
T KOG0809|consen  212 VVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLL  291 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHH
Confidence                    1122   22222222222233457888888888888888888989999999999877777655544444333


Q ss_pred             HH
Q 027099          218 VI  219 (228)
Q Consensus       218 ~~  219 (228)
                      +|
T Consensus       292 ii  293 (305)
T KOG0809|consen  292 II  293 (305)
T ss_pred             HH
Confidence            33

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=96.98  E-value=0.037  Score=39.60  Aligned_cols=64  Identities=11%  Similarity=0.103  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHH
Q 027099          146 VRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIK  209 (228)
Q Consensus       146 L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~  209 (228)
                      +......++++..+-...++.+-+..+.|.....+-.++...-..=.+.-+.+.|+..-.++-+
T Consensus         5 l~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~   68 (89)
T PF00957_consen    5 LEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKL   68 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444443333333222222333334444444343333

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=0.021  Score=42.78  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHHh
Q 027099          152 MLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTV-VILYFFWRWT  227 (228)
Q Consensus       152 ~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~~~~i~~~~-~~i~~i~~~~  227 (228)
                      .+--.-...-.|-.+...|...|.+..+-+..+.+-|+.+-.=+..|.|+   +.+-++..++++| +.||++||||
T Consensus        44 kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~---sg~~l~~~m~~f~lV~~fi~~~~l  117 (118)
T KOG3385|consen   44 KVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR---SGISLLCWMAVFSLVAFFILWVWL  117 (118)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHhheee
Confidence            33334455667777889999999999988888888887776666667766   3333334444444 4444444444

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.18  Score=37.99  Aligned_cols=83  Identities=13%  Similarity=0.092  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhchhcch-HHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 027099          143 MQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKAL---DVLNTVGLS-NSVLRLIERRNRVDTWIKYVGMVSTVV  218 (228)
Q Consensus       143 ~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~---~~~~~lg~s-~~ll~~I~rR~~~dk~I~~~~i~~~~~  218 (228)
                      ..++.+..+.+|++.++=.+-.+..-+-.+.|..-.+|-.   +.++.+-.+ .++=++|=-+..+-++|+  |++++++
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il--~~v~~i~  105 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIIL--GLVIIIL  105 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            3678888888888877776666666666666655555433   333333333 334444554555555555  3333344


Q ss_pred             HHHHHHHHh
Q 027099          219 ILYFFWRWT  227 (228)
Q Consensus       219 ~i~~i~~~~  227 (228)
                      ++++++|+|
T Consensus       106 l~iiii~~~  114 (116)
T KOG0860|consen  106 LVVIIIYIF  114 (116)
T ss_pred             HHHHHHHHh
Confidence            444444443

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=1.7  Score=38.20  Aligned_cols=72  Identities=10%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHH---HHHHhhhhhhHHHHHHHHH
Q 027099          144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLR---LIERRNRVDTWIKYVGMVS  215 (228)
Q Consensus       144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~---~I~rR~~~dk~I~~~~i~~  215 (228)
                      +-+..-.+.+.|..+.=..+-.--..|.+++.++-.-+.++...++.+..=+.   .+.++.++-|+|.+.++++
T Consensus       206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~ii  280 (297)
T KOG0810|consen  206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILII  280 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHH
Confidence            44444555555555554555555578999999999999999999999887666   7788888888776544433

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.33  E-value=2  Score=35.81  Aligned_cols=22  Identities=14%  Similarity=0.436  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027099           83 WKRKVEQVAEEAESLKESLDKY  104 (228)
Q Consensus        83 ~~~rv~~~r~el~~l~~~~~~~  104 (228)
                      ...++..+..++..++.++..+
T Consensus        91 ~~~rlp~le~el~~l~~~l~~~  112 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNNI  112 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777777777777664

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=93.90  E-value=1.6  Score=30.96  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhhHHHHHHH
Q 027099          152 MLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGM  213 (228)
Q Consensus       152 ~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk~I~~~~i  213 (228)
                      .++..++.| +-+++|..+.+.|......+...      |..+=+++-.+...=.+|+++++
T Consensus        22 Ni~~ll~Rg-e~L~~L~~kt~~L~~~a~~F~k~------a~~l~r~~~~~~~k~~~i~~~iv   76 (89)
T PF00957_consen   22 NIDKLLERG-EKLEELEDKTEELSDNAKQFKKN------AKKLKRKMWWRNYKLYIIIIIIV   76 (89)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC-chHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHhHHhhh
Confidence            345566677 66888888888888777777654      44455567777777777774433

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=93.49  E-value=4.2  Score=34.47  Aligned_cols=81  Identities=12%  Similarity=0.110  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchH----HHHHHHHHhhhhhhHHHHHHHHHHHH
Q 027099          143 MQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSN----SVLRLIERRNRVDTWIKYVGMVSTVV  218 (228)
Q Consensus       143 ~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~----~ll~~I~rR~~~dk~I~~~~i~~~~~  218 (228)
                      +.-|....+++.|+.+.=..+-+...+|-+.+.-+.+-+.+.-..++.+.    +-+.. .|..+..||+.||++++.++
T Consensus       184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~  262 (280)
T COG5074         184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIII  262 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHH
Confidence            35677777888888877777777778899999888888887766665554    45544 67788889888876655555


Q ss_pred             HHHHHH
Q 027099          219 ILYFFW  224 (228)
Q Consensus       219 ~i~~i~  224 (228)
                      +|++++
T Consensus       263 viv~vv  268 (280)
T COG5074         263 VIVVVV  268 (280)
T ss_pred             HHHHHH
Confidence            544444

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=0.97  Score=39.72  Aligned_cols=77  Identities=13%  Similarity=0.224  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHH
Q 027099          150 SRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERR-NRVDTWIKYVGMVSTVVILYFFWRW  226 (228)
Q Consensus       150 ~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR-~~~dk~I~~~~i~~~~~~i~~i~~~  226 (228)
                      .+.+-|+...=.-.-+-+-.|-..+..+++-..+++-.+..+|.=|+++.+. ...-+|++|+.+++-++++|+-||+
T Consensus       238 e~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~lLFldwy~  315 (316)
T KOG3894|consen  238 EKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSLLFLDWYY  315 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcC
Confidence            3333334433334455677889999999999999999999999999988886 5555666666666666666666664

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=92.46  E-value=0.9  Score=30.90  Aligned_cols=32  Identities=16%  Similarity=0.215  Sum_probs=24.5

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027099          194 VLRLIERRNRVDTWIKYVGMVSTVVILYFFWR  225 (228)
Q Consensus       194 ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~~  225 (228)
                      +-.+|+++.=+|--|+||.++.++++.+++.-
T Consensus        38 v~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l   69 (75)
T COG4064          38 VYQRIGKKIGRDIGILYGLVIGLILCMIYILL   69 (75)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            44567888888999999998887777666553

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.62  E-value=7.2  Score=32.57  Aligned_cols=185  Identities=14%  Similarity=0.084  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHH
Q 027099           11 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQV   90 (228)
Q Consensus        11 ~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~   90 (228)
                      |.++|..|.+..+++...|..-..-..       ..+  ..+=...+.+.++.++..+.+...+.- ..|..--.-=..|
T Consensus         1 ms~~fe~yEqqy~~l~a~it~k~~~~~-------~~~--~~ekk~~l~~i~~~leEa~ell~qMdl-Evr~lp~~~Rs~~   70 (220)
T KOG1666|consen    1 MSSLFEGYEQQYRELSAEITKKIGRAL-------SLP--GSEKKQLLSEIDSKLEEANELLDQMDL-EVRELPPNFRSSY   70 (220)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHh-------cCC--chHHHHHHHHHHHhHHHHHHHHHHHHH-HHHhCCchhhhHH
Confidence            457888888888888888765432211       112  334445577777777777777776544 2221111111257


Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCCC-CChh-hhc---hhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099           91 AEEAESLKESLDKYFLRNQRRINEARERAELLGRANG-ESSH-ILR---IFD---EEAQAMQSVRNSSRMLQESFATGTA  162 (228)
Q Consensus        91 r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl~~~~~-~~~~-~~~---~~d---~~~~~~~~L~~s~~~lde~~~~g~~  162 (228)
                      ..-+..+++++++++.    ..+....+....+.... ..+. ..+   ..|   +.++.+++|.+|.+.+.+.--++.+
T Consensus        71 ~~KlR~yksdl~~l~~----e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~E  146 (220)
T KOG1666|consen   71 LSKLREYKSDLKKLKR----ELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALE  146 (220)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence            7788888888887643    12222111111111100 0000 010   112   2345678899999999888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHH--hhhhhhHHH
Q 027099          163 ILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIER--RNRVDTWIK  209 (228)
Q Consensus       163 ~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~r--R~~~dk~I~  209 (228)
                      |=+-=..==+-|.+=++.|...-.++..++.-+.+=.+  +.+.-+++.
T Consensus       147 TEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~  195 (220)
T KOG1666|consen  147 TEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIR  195 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHH
Confidence            64333333456777788888888888888877766554  234444443

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.60  E-value=8.5  Score=33.40  Aligned_cols=57  Identities=12%  Similarity=0.039  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHH
Q 027099          144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIER  200 (228)
Q Consensus       144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~r  200 (228)
                      +.+.+-.+-+-|..++=...-.-.++|.+.+.++-..+..+...+-.++.-|++=.+
T Consensus       180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~  236 (269)
T KOG0811|consen  180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAK  236 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555566665555555556789999999999999999999888877776543

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=91.41  E-value=0.59  Score=30.99  Aligned_cols=32  Identities=16%  Similarity=0.206  Sum_probs=19.4

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 027099          193 SVLRLIERRNRVDTWIKYVGMVSTVVILYFFW  224 (228)
Q Consensus       193 ~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~  224 (228)
                      ....+-.+|.++-++|+++++++++++++++-
T Consensus        26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~   57 (59)
T PF09889_consen   26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFMT   57 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777778888766666444444433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>smart00397 t_SNARE Helical region found in SNAREs

Probab=90.84  E-value=1.5  Score=28.55  Aligned_cols=54  Identities=15%  Similarity=0.099  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHH
Q 027099          143 MQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLR  196 (228)
Q Consensus       143 ~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~  196 (228)
                      ...|.+.+..+.++.+++..+-..+..|++.|.++...+..+...+..+.+-+.
T Consensus        11 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~   64 (66)
T smart00397       11 DEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLK   64 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            378888999999999999999999999999999999999999998887776554

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=90.66  E-value=1.7  Score=30.27  Aligned_cols=50  Identities=16%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             HHHHHHHHhhchhcchH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027099          176 KAQRKALDVLNTVGLSN-SVLRLIERRNRVDTWIKYVGMVSTVVILYFFWR  225 (228)
Q Consensus       176 ~~~~kl~~~~~~lg~s~-~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~~  225 (228)
                      .+.+||.++...+-..+ -+-.+++++.=+|=-|+||+++.+++++.|+..
T Consensus        19 ~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~   69 (77)
T PRK01026         19 EIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIIL   69 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444333 345567788888999999988887776666543

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=90.32  E-value=0.27  Score=37.50  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=15.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 027099          206 TWIKYVGMVSTVVILYFFWRWT  227 (228)
Q Consensus       206 k~I~~~~i~~~~~~i~~i~~~~  227 (228)
                      .+|++|+|+.++++|++|+|+.
T Consensus        67 ~~Ii~gv~aGvIg~Illi~y~i   88 (122)
T PF01102_consen   67 IGIIFGVMAGVIGIILLISYCI   88 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhHHHHHHHHHHHHHHHHHH
Confidence            3566777777777777777764

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=90.14  E-value=2.1  Score=29.11  Aligned_cols=50  Identities=16%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhhchhcchH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 027099          175 KKAQRKALDVLNTVGLSN-SVLRLIERRNRVDTWIKYVGMVSTVVILYFFW  224 (228)
Q Consensus       175 ~~~~~kl~~~~~~lg~s~-~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~  224 (228)
                      +.+.+||.++...+-..+ -+-.+++++.=+|=-|+||.++.+++++.|..
T Consensus        15 ~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~   65 (70)
T TIGR01149        15 NEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYIL   65 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444 35567788888899999998888766555443

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=89.75  E-value=2.4  Score=28.87  Aligned_cols=48  Identities=10%  Similarity=0.239  Sum_probs=30.8

Q ss_pred             HHHHHHHHhhchhcchH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 027099          176 KAQRKALDVLNTVGLSN-SVLRLIERRNRVDTWIKYVGMVSTVVILYFF  223 (228)
Q Consensus       176 ~~~~kl~~~~~~lg~s~-~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i  223 (228)
                      .+.+||.++...+-..+ -+-.+++++.=+|--|+||.++.+++++.|+
T Consensus        16 ~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~   64 (70)
T PF04210_consen   16 EIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYI   64 (70)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444443 3556778888889999999888776655544

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins

Probab=89.56  E-value=0.24  Score=36.48  Aligned_cols=24  Identities=0%  Similarity=0.027  Sum_probs=13.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHh
Q 027099          204 VDTWIKYVGMVSTVVILYFFWRWT  227 (228)
Q Consensus       204 ~dk~I~~~~i~~~~~~i~~i~~~~  227 (228)
                      .+-++++.+.++|++++++++|||
T Consensus        61 ~~iili~lls~v~IlVily~IyYF   84 (101)
T PF06024_consen   61 GNIILISLLSFVCILVILYAIYYF   84 (101)
T ss_pred             ccchHHHHHHHHHHHHHHhhheEE
Confidence            344455444555555556666665

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=89.35  E-value=4.4  Score=26.45  Aligned_cols=59  Identities=15%  Similarity=0.088  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhh
Q 027099          144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRN  202 (228)
Q Consensus       144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~  202 (228)
                      +.|..-+..+.++-+++..+-..+..|.+.|.++...+..+...+..++.=|.+..++.
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56777888888999999999999999999999999999999999999988887776653

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=89.24  E-value=26  Score=35.17  Aligned_cols=24  Identities=13%  Similarity=0.205  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 027099           83 WKRKVEQVAEEAESLKESLDKYFL  106 (228)
Q Consensus        83 ~~~rv~~~r~el~~l~~~~~~~~~  106 (228)
                      ++....+++..+...|+++..+..
T Consensus       265 L~~~~~qL~~~L~~vK~~L~~~l~  288 (806)
T PF05478_consen  265 LQEYQSQLRDGLRGVKRDLNNTLQ  288 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445666666666666666543

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.62  E-value=2  Score=37.33  Aligned_cols=56  Identities=21%  Similarity=0.297  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHH
Q 027099          144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIE  199 (228)
Q Consensus       144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~  199 (228)
                      .+-.++-..+.+....|..|+..|..|++.|.+|...+-++...+-.+.+.|..++
T Consensus        79 ~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~  134 (273)
T KOG3065|consen   79 KSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK  134 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            34445555667889999999999999999999999999999999998888888776

>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional

Probab=86.93  E-value=1.3  Score=24.75  Aligned_cols=20  Identities=10%  Similarity=0.232  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 027099          208 IKYVGMVSTVVILYFFWRWT  227 (228)
Q Consensus       208 I~~~~i~~~~~~i~~i~~~~  227 (228)
                      ++.|++++++++.+++|..|
T Consensus         5 vi~g~llv~lLl~YLvYAL~   24 (29)
T PRK14750          5 IVCGALLVLLLLGYLVYALF   24 (29)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            55677777777777777665

>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Probab=85.96  E-value=2.4  Score=25.64  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=21.0

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 027099          197 LIERRNRVDTWIKYVGMVSTVVILYFFWRWT  227 (228)
Q Consensus       197 ~I~rR~~~dk~I~~~~i~~~~~~i~~i~~~~  227 (228)
                      .|+||..-|.+++.++.+.....++=+++||
T Consensus         5 dm~RR~lmN~ll~Gava~~a~~~lyP~~~ff   35 (39)
T PF08802_consen    5 DMSRRQLMNLLLGGAVAVPAGGMLYPYVKFF   35 (39)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHhhHHHHHHHHhhhheeEe
Confidence            4899999999777555555555555566665

The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.

>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C

Probab=85.82  E-value=1.4  Score=28.25  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 027099          193 SVLRLIERRNRVDTWIKYVGMVSTVVILYFFW  224 (228)
Q Consensus       193 ~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~  224 (228)
                      +..+.+-+|-++||.-++|.+++++++++.++
T Consensus         3 s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~   34 (56)
T PF12911_consen    3 SPWKDAWRRFRRNKLAVIGLIILLILVLLAIF   34 (56)
T ss_pred             CHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            34567788999999999877776655555443

>PHA03164 hypothetical protein; Provisional

Probab=83.48  E-value=1.6  Score=30.31  Aligned_cols=36  Identities=14%  Similarity=0.281  Sum_probs=21.7

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHHHHhC
Q 027099          193 SVLRLIERRNRVDTWIKYVGMVS-TVVILYFFWRWTR  228 (228)
Q Consensus       193 ~ll~~I~rR~~~dk~I~~~~i~~-~~~~i~~i~~~~~  228 (228)
                      .--+.++.|.++-.+|+..|+++ .+++++|++|.|.
T Consensus        46 tawnlwnnrRktftFlvLtgLaIamILfiifvlyvFn   82 (88)
T PHA03164         46 TAWNLWNNRRKTFTFLVLTGLAIAMILFIIFVLYVFN   82 (88)
T ss_pred             hhHHHHHhhhheeehHHHHHHHHHHHHHHHHHHHhee
Confidence            33445666666666666555544 4566667777763

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=83.31  E-value=9.5  Score=28.30  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=18.3

Q ss_pred             cccCCCCHHHHHHHHHHHHHHH
Q 027099            4 AVEGGGTLSEIYQSAKKLLLRA   25 (228)
Q Consensus         4 ~~~~~~~~~~L~~~a~~l~~ei   25 (228)
                      ++.|.++|..++.++.+|..++
T Consensus        12 ~~~gaG~~a~~~ek~~klvDel   33 (108)
T COG3937          12 ALIGAGLAAETAEKVQKLVDEL   33 (108)
T ss_pred             HHhhccHHHHHHHHHHHHHHHH
Confidence            4567789999999999998775

>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor

Probab=82.47  E-value=1.2  Score=36.46  Aligned_cols=27  Identities=22%  Similarity=0.515  Sum_probs=19.0

Q ss_pred             hhhhhHHHHHHHHHH---HHHHHHHHHHhC
Q 027099          202 NRVDTWIKYVGMVST---VVILYFFWRWTR  228 (228)
Q Consensus       202 ~~~dk~I~~~~i~~~---~~~i~~i~~~~~  228 (228)
                      ..=|..=|+||||+.   +.|+||+|||++
T Consensus       156 s~FD~~SFiGGIVL~LGv~aI~ff~~KF~k  185 (186)
T PF05283_consen  156 STFDAASFIGGIVLTLGVLAIIFFLYKFCK  185 (186)
T ss_pred             CCCchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence            445777788888875   456677777764

Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.

>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases

Probab=81.92  E-value=11  Score=30.48  Aligned_cols=45  Identities=13%  Similarity=0.248  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027099           51 FAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESL  101 (228)
Q Consensus        51 ~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~  101 (228)
                      ++++..|+++..-|+.||.....      -..++.|+..+..+|+.++.+|
T Consensus       123 ~eL~~eI~~L~~~i~~le~~~~~------~k~LrnKa~~L~~eL~~F~~~y  167 (171)
T PF04799_consen  123 NELEDEIKQLEKEIQRLEEIQSK------SKTLRNKANWLESELERFQEQY  167 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444444444433222      2245556666666666666665

Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.63  E-value=29  Score=28.85  Aligned_cols=52  Identities=8%  Similarity=0.112  Sum_probs=23.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 027099            7 GGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMD   68 (228)
Q Consensus         7 ~~~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~   68 (228)
                      ..++.-+..+...+...+++.+|..+..          +.+....+++..+++.++.+.+|+
T Consensus        87 ~~p~~~~rlp~le~el~~l~~~l~~~~~----------~~~~~~~~l~~~~~~~~~~~~~L~  138 (206)
T PRK10884         87 TTPSLRTRVPDLENQVKTLTDKLNNIDN----------TWNQRTAEMQQKVAQSDSVINGLK  138 (206)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444321          233444445555555444444433

>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins

Probab=81.44  E-value=3  Score=24.85  Aligned_cols=23  Identities=17%  Similarity=0.505  Sum_probs=14.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Q 027099          205 DTWIKYVGMVSTVVILYFFWRWT  227 (228)
Q Consensus       205 dk~I~~~~i~~~~~~i~~i~~~~  227 (228)
                      |-++-+....+++++|.+|++||
T Consensus         8 dfylc~l~~llflv~imliif~f   30 (43)
T PF11395_consen    8 DFYLCFLSFLLFLVIIMLIIFWF   30 (43)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455566677777777765

>PF14937 DUF4500: Domain of unknown function (DUF4500)

Probab=80.98  E-value=1.9  Score=30.61  Aligned_cols=25  Identities=8%  Similarity=0.105  Sum_probs=21.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHH
Q 027099          202 NRVDTWIKYVGMVSTVVILYFFWRW  226 (228)
Q Consensus       202 ~~~dk~I~~~~i~~~~~~i~~i~~~  226 (228)
                      .+.||+|+.+|++.+.+|+.||.|.
T Consensus        33 ~kPNk~iM~~Gl~a~~~c~gYi~Ym   57 (86)
T PF14937_consen   33 VKPNKPIMAFGLIAITLCVGYIAYM   57 (86)
T ss_pred             ccCCchhhHHHHHHHHHHHHHHHHH
Confidence            5679999999999999999998874

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.92  E-value=27  Score=29.29  Aligned_cols=31  Identities=23%  Similarity=0.473  Sum_probs=13.9

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 027099          193 SVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW  226 (228)
Q Consensus       193 ~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~~~  226 (228)
                      .....|.++..-+++   +.+++++++++++|+|
T Consensus       183 ~~a~~in~~sl~~~~---aa~~~~~~~l~f~~~f  213 (216)
T KOG0862|consen  183 KTAKGINRKSLIRKY---AAYVVFFVLLLFYVRF  213 (216)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            344455555554443   3344444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2nps_C	81	Vesicle transport through interaction with T- snar	8e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 52/193 (26%)

Query: 40  STGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKE 99
           +    +SPE        +  +Q L  ++D  W S +  S           +     S++ 
Sbjct: 188 NLKNCNSPET------VLEMLQKLLYQIDPNWTSRSDHSSN---------IKLRIHSIQA 232

Query: 100 SLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFAT 159
            L +             E   LL   N +++     F+   + + + R        S AT
Sbjct: 233 ELRRLLKSKP------YENC-LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 160 GT-----------------AILAKYAEQREH-LKKAQRKALD----VLNTVGLSNSVLRL 197
            T                 ++L KY + R   L    R+ L      L+ +  S     +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAES-----I 337

Query: 198 IERRNRVDTWIKY 210
            +     D W   
Sbjct: 338 RDGLATWDNWKHV 350

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 26/188 (13%), Positives = 55/188 (29%), Gaps = 54/188 (28%)

Query: 78  SQRDLWKRKVEQVAEEAESLKESLD-KYFLRNQRRINEARERAELLGRANGESSHILRIF 136
            +     + +  V E+A    ++ D K      + I    E   ++   +  S   LR+F
Sbjct: 12  GEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLF 68

Query: 137 D--------------EE---------AQAMQSVRNSSRMLQESFA-------TGTAILAK 166
                          EE            +++ +    M+   +            + AK
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 167 YAEQREHLKKAQRKALDVLN---------------TVGLSNSVLRLIERRNRVDT---WI 208
           Y   R       R+AL  L                T  ++  V    + + ++D    W+
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWL 187

Query: 209 KYVGMVST 216
             +   ++
Sbjct: 188 N-LKNCNS 194

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 13/72 (18%), Positives = 35/72 (48%)

Query: 130 SHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVG 189
           +H+L   +   ++ + +    ++  E+   G  +L   +  RE +++A+ +  +    +G
Sbjct: 5   AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLG 64

Query: 190 LSNSVLRLIERR 201
            S+ +L  + RR
Sbjct: 65  KSSRILTGMLRR 76

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 9/33 (27%)

Query: 30 EK--LERLESSTSTGGY--DS-PELSFAVKKDI 57
          EK  L++L++S     Y  DS P L  A+K  +
Sbjct: 18 EKQALKKLQASLKL--YADDSAPAL--AIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
2qyw_A	102	Vesicle transport through interaction with T-SNAR	99.43
2nps_C	81	Vesicle transport through interaction with T- snar	99.42
1vcs_A	102	Vesicle transport through interaction with T- snar	99.39
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	99.36
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.19
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	98.66
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	98.36
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	97.27
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	97.03
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	96.77
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	96.68
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	89.77
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	85.74
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	85.27
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	85.23
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	83.46
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	82.04
4ev6_A	339	Magnesium transport protein CORA; membrane protein	80.64
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	80.05

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=99.43  E-value=3.9e-13  Score=98.63  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             ccccCCCCHHHHHHHHH----HHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 027099            3 MAVEGGGTLSEIYQSAK----KLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKS   78 (228)
Q Consensus         3 ~~~~~~~~~~~L~~~a~----~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s   78 (228)
                      .||-.+.+|.+||..|.    .+..+|+.+++++....     ++++++..+++|+..|+++.++|++|+.++++.|+ +
T Consensus         5 ~~~~~~~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~-----~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~-s   78 (102)
T 2qyw_A            5 IHMAASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTA-----GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPL-T   78 (102)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH-H
T ss_pred             ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-H
Confidence            46666777778887665    56666777777664331     23478999999999999999999999999999987 8


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 027099           79 QRDLWKRKVEQVAEEAESLKESLD  102 (228)
Q Consensus        79 ~r~~~~~rv~~~r~el~~l~~~~~  102 (228)
                      .|..++.||+.||.+|+.++++|+
T Consensus        79 ~R~~~~~klr~Yk~dL~~lk~elk  102 (102)
T 2qyw_A           79 FRNPMMSKLRNYRKDLAKLHREVR  102 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999873

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.42  E-value=7.9e-13  Score=92.93  Aligned_cols=70  Identities=16%  Similarity=0.267  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhh
Q 027099          137 DEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDT  206 (228)
Q Consensus       137 d~~~~~~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk  206 (228)
                      +...+..++|.+|.+.+.||+++|.+|+++|..||++|.+++++++++++.++.|.++|+.|.||..+||
T Consensus        12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C           12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            4444566999999999999999999999999999999999999999999999999999999999999886

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=99.39  E-value=1.7e-12  Score=95.20  Aligned_cols=91  Identities=15%  Similarity=0.230  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 027099            9 GTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVE   88 (228)
Q Consensus         9 ~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~   88 (228)
                      .-|+..-.++..+..+|..+++++....      |++++..+.+|+..|+++.++|++|+.+++++|+ +.|..++.||+
T Consensus         5 elFe~YE~df~~l~~~i~~kl~~i~~~~------geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~-~~R~~~~~klr   77 (102)
T 1vcs_A            5 SSGEGYEQDFAVLTAEITSKIARVPRLP------PDEKKQMVANVEKQLEEARELLEQMDLEVREIPP-QSRGMYSNRMR   77 (102)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHGGGSC------TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HhHHHHHHHHH
Confidence            4466667788999999999999986542      3488999999999999999999999999999987 88999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 027099           89 QVAEEAESLKESLDKYFL  106 (228)
Q Consensus        89 ~~r~el~~l~~~~~~~~~  106 (228)
                      .|+.+|..++++|+++..
T Consensus        78 ~Yk~dL~~lk~elk~~~~   95 (102)
T 1vcs_A           78 SYKQEMGKLETDFKRSRI   95 (102)
T ss_dssp             HHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999988643

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=99.36  E-value=7.5e-12  Score=90.96  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhhhHHHHHHHHH
Q 027099           11 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSI--AAKSQRDLWKRKVE   88 (228)
Q Consensus        11 ~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~--~~~s~r~~~~~rv~   88 (228)
                      |+..-.++..+..+|..++++++...+      ++++..+.+|+..++++.++|++|+.+++++  |+ +.|..++.||+
T Consensus         3 F~~YE~df~~~~~~i~~~l~~~~~~~g------e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~-~~R~~~~~klr   75 (97)
T 3onj_A            3 LISYESDFKTTLEQAKASLAEAPSQPL------SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDA-SERATYKAKLR   75 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence            455667788899999999998875433      3789999999999999999999999999999  87 88999999999


Q ss_pred             HHHHHHHH-HHHHHHHH
Q 027099           89 QVAEEAES-LKESLDKY  104 (228)
Q Consensus        89 ~~r~el~~-l~~~~~~~  104 (228)
                      .|+.+|.. ++++|+++
T Consensus        76 ~Yk~dl~~~lk~~lk~l   92 (97)
T 3onj_A           76 EWKKTIQSDIKRPLQSL   92 (97)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999 99999886

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.19  E-value=5.4e-11  Score=80.07  Aligned_cols=59  Identities=29%  Similarity=0.477  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHH
Q 027099          142 AMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIER  200 (228)
Q Consensus       142 ~~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~r  200 (228)
                      ..++|.+|.+.+.|++++|.+|+.+|+.||++|.++++++.+++..++.|.++|+.|.|
T Consensus         7 t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            7 ATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            45899999999999999999999999999999999999999999999999999999875

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=98.66  E-value=1.4e-07  Score=65.68  Aligned_cols=58  Identities=19%  Similarity=0.262  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHH
Q 027099          142 AMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIE  199 (228)
Q Consensus       142 ~~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~  199 (228)
                      ..+++.++.+++.++++.|.+|+.+|..||++|.++++.|.++++.+..|.++|+.|+
T Consensus        21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C           21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            4589999999999999999999999999999999999999999999999999999986

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=98.36  E-value=9.3e-07  Score=56.96  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHH
Q 027099          147 RNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLI  198 (228)
Q Consensus       147 ~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I  198 (228)
                      .++-+.+.++++.|..|+.+|..||++|.++++.|.++++.+..|.++|+.|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            4678899999999999999999999999999999999999999999998753

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=97.27  E-value=0.0018  Score=43.65  Aligned_cols=57  Identities=18%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHH
Q 027099          144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIER  200 (228)
Q Consensus       144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~r  200 (228)
                      ++-.++-+++.+..+.|.+++..|..|++.|.++.+.|-+++..+..+.+-++.+..
T Consensus        12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C           12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            566777788899999999999999999999999999999999999999998888763

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=97.03  E-value=0.001  Score=46.27  Aligned_cols=57  Identities=23%  Similarity=0.235  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHH
Q 027099          143 MQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIE  199 (228)
Q Consensus       143 ~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~  199 (228)
                      .++-.++-+++.+..+.|..++..|..|++.|.++.+.|-++.+.+..+.+.|+.|+
T Consensus        26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~   82 (83)
T 1l4a_C           26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            367778888889999999999999999999999999999999999999888776554

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=96.77  E-value=0.033  Score=39.24  Aligned_cols=28  Identities=7%  Similarity=0.130  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027099          156 SFATGTAILAKYAEQREHLKKAQRKALDV  184 (228)
Q Consensus       156 ~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~  184 (228)
                      .++.| +-|++|.+..+.|......+...
T Consensus        28 vL~Rg-ekL~~L~~kt~~L~~~s~~F~~~   55 (91)
T 3hd7_A           28 VLERD-QKLSELDDRADALQAGASQFETS   55 (91)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence            44445 44666666666666655555443

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=96.68  E-value=0.069  Score=38.83  Aligned_cols=80  Identities=10%  Similarity=0.032  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHH---HHHHhhhhhhHHHHHHHHHHHHHH
Q 027099          144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLR---LIERRNRVDTWIKYVGMVSTVVIL  220 (228)
Q Consensus       144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~---~I~rR~~~dk~I~~~~i~~~~~~i  220 (228)
                      +.+.+-.+.+.+..++-...-.-..+|.+.+.++..-+.++...+..++.=|.   ++.++.++-+|+++++++++++++
T Consensus        21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i~  100 (109)
T 3hd7_B           21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIII  100 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHHH
Confidence            55666666666777776677777789999999999999999999999998774   455556666666655444444444


Q ss_pred             HHH
Q 027099          221 YFF  223 (228)
Q Consensus       221 ~~i  223 (228)
                      .++
T Consensus       101 ~~~  103 (109)
T 3hd7_B          101 AST  103 (109)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=89.77  E-value=0.048  Score=40.39  Aligned_cols=32  Identities=13%  Similarity=0.180  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099          144 QSVRNSSRMLQESFATGTAILAKYAEQREHLK  175 (228)
Q Consensus       144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~  175 (228)
                      +.|......++|+..+-...++.+-+..+.|.
T Consensus        33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd   64 (119)
T 2kog_A           33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLS   64 (119)
T ss_dssp             SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            55666666666666666665555555544443

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=85.74  E-value=0.55  Score=28.34  Aligned_cols=19  Identities=11%  Similarity=0.032  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHhC
Q 027099          210 YVGMVSTVVILYFFWRWTR  228 (228)
Q Consensus       210 ~~~i~~~~~~i~~i~~~~~  228 (228)
                      +||+++++++++.+++|+|
T Consensus        18 VgGv~~~~ii~~~~~~~~R   36 (44)
T 2ks1_B           18 VGALLLLLVVALGIGLFMR   36 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhh
Confidence            3455555555555555553

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=85.27  E-value=9.5  Score=28.25  Aligned_cols=71  Identities=8%  Similarity=0.031  Sum_probs=41.4

Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027099            3 MAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTST-GGYDSPELSFAVKKDISQIQSLCVEMDRLWRS   73 (228)
Q Consensus         3 ~~~~~~~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~-~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~   73 (228)
                      |.|+...-|-.....+.....-++..+.+.......+++ +.++...+-++++..|..++.-+++|+.-+.-
T Consensus        21 ~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~i   92 (130)
T 4dnd_A           21 QSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGI   92 (130)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555566666667777777777777776544322111 12345566788888888888888888877764

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=85.23  E-value=0.61  Score=28.15  Aligned_cols=17  Identities=18%  Similarity=0.229  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 027099          211 VGMVSTVVILYFFWRWT  227 (228)
Q Consensus       211 ~~i~~~~~~i~~i~~~~  227 (228)
                      ||+++++++++.+++|+
T Consensus        18 gGv~~v~ii~~~~~~~~   34 (44)
T 2l2t_A           18 GGLFILVIVGLTFAVYV   34 (44)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            44555555555555554

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=83.46  E-value=1.3  Score=25.73  Aligned_cols=21  Identities=10%  Similarity=0.169  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC
Q 027099          208 IKYVGMVSTVVILYFFWRWTR  228 (228)
Q Consensus       208 I~~~~i~~~~~~i~~i~~~~~  228 (228)
                      |++|.++...++..++|+|||
T Consensus        16 iVvG~v~gv~li~~l~~~~~r   36 (38)
T 2k1k_A           16 VIFGLLLGAALLLGILVFRSR   36 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC
T ss_pred             eehHHHHHHHHHHHHHHHHee
Confidence            444555444555555555554

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=82.04  E-value=7.6  Score=27.30  Aligned_cols=46  Identities=13%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027099           50 SFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESL  101 (228)
Q Consensus        50 ~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~  101 (228)
                      ..+++..|.++..-|+.||...+.      -..++.|..-+..+|..+..+|
T Consensus        49 ~~eL~~EI~~L~~eI~~LE~iqs~------aK~LRnKA~~L~~eLe~F~~~y   94 (96)
T 1t3j_A           49 QKHLEEEIARLSKEIDQLEKMQNN------SKLLRNKAVQLESELENFSKQF   94 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444433332      1234445555666666665554

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=80.64  E-value=26  Score=29.80  Aligned_cols=44  Identities=9%  Similarity=-0.043  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099           56 DISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDK  103 (228)
Q Consensus        56 ~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~  103 (228)
                      -++++.+-+++++..+...+.    .....++-.+|.++-.+++.+.-
T Consensus       172 ~l~~l~~~i~~lE~~l~~~~~----~~~l~~l~~lrr~l~~lrr~l~~  215 (339)
T 4ev6_A          172 ILMNLEDELEELEDKLLAGYD----REVMEKILGLRKTLVYFHKSLIA  215 (339)
T ss_dssp             HHHHHHHHHHHHHHTSTTCCC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhh----hhHHHHHHHHHHHHHHHHHHhhh
Confidence            344444444444443332222    23445666777777766666643

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=80.05  E-value=8.1  Score=24.72  Aligned_cols=55  Identities=13%  Similarity=0.130  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHH
Q 027099          144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLI  198 (228)
Q Consensus       144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I  198 (228)
                      +.|..-+..+...-.+|..|=+++..|...|......+-.+...+...++=+.++
T Consensus         9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l   63 (65)
T 1gl2_D            9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV   63 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566667777778888999999999999999999999998888887766555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	99.49
d1q90r_	39	ISP subunit from the cytochrome b6f complex, trans	81.06

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.1e-13  Score=97.16  Aligned_cols=83  Identities=17%  Similarity=0.275  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHH
Q 027099           16 QSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAE   95 (228)
Q Consensus        16 ~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~   95 (228)
                      .++..+.++|+.++++++.+.+      ++++...++|+..|+++.++|++|+++++++|+ +.|..+..|++.|+.|+.
T Consensus         5 ~~y~~l~a~i~~kl~~i~~~~g------eerk~~l~~ie~~leEA~ell~qMelEvr~~p~-s~R~~~~~klr~Yk~dl~   77 (89)
T d1vcsa1           5 QDFAVLTAEITSKIARVPRLPP------DEKKQMVANVEKQLEEARELLEQMDLEVREIPP-QSRGMYSNRMRSYKQEMG   77 (89)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCT------TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHH
Confidence            4778899999999999876533      489999999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHHHHHH
Q 027099           96 SLKESLDKYF  105 (228)
Q Consensus        96 ~l~~~~~~~~  105 (228)
                      .++++|++++
T Consensus        78 ~lk~elk~a~   87 (89)
T d1vcsa1          78 KLETDFKRSR   87 (89)
T ss_dssp             HHHHHTHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999999864

>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: ISP transmembrane anchor
family: ISP transmembrane anchor
domain: ISP subunit from the cytochrome b6f complex, transmembrane anchor
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=81.06  E-value=1.6  Score=24.06  Aligned_cols=17  Identities=18%  Similarity=0.247  Sum_probs=12.7

Q ss_pred             HHHhhhhhhHHHHHHHHH
Q 027099          198 IERRNRVDTWIKYVGMVS  215 (228)
Q Consensus       198 I~rR~~~dk~I~~~~i~~  215 (228)
                      |+||...|-+++ |++.+
T Consensus         7 MgrR~~MNLll~-G~~~~   23 (39)
T d1q90r_           7 MNKRNIMNLILA-GGAGL   23 (39)
T ss_dssp             HHHHHHHHHHHH-HHHHH
T ss_pred             hhHHHHHHHHHH-hccch
Confidence            899999998776 44444