Citrus Sinensis ID: 027103

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSPCHSLSSFLRYKYC
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEcccccccccccHHHHHHHHHHcccccccccc
cccccHHEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHEEcccHEEEEEEcccc
megkeedvklgankfserqpigtsaqsdkdykepppaplfepgelkswSFYRAGIAEFMATFLFLYITVLTVMGvsksntkcsTVGIQGIAWAFGGMIFALVYCTagisgghinpaVTFGLLLARKLSLTRAVFYMVMQCLGAVcgagvvkgfegsknyerlggganvvahgytkgdglgaEIIGTFVLVYTVFSatdakrnardshvpvsilspchslssflrykyc
megkeedvklgankfserqpigtsaqsdkdykepPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRnardshvpvsilspchslssflrykyc
MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSPCHSLSSFLRYKYC
*******************************************ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA*DSHVPVSILSPCHSLSSFLRY***
******D******************************PLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSPCHSLSSFLRYKYC
********KLGANKFSERQ**************PPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSPCHSLSSFLRYKYC
****************************KDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSPCHSLSSFLRYKYC
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSPCHSLSSFLRYKYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query228 2.2.26 [Sep-21-2011]
Q7XSQ9288 Probable aquaporin PIP1-2 yes no 0.929 0.736 0.875 1e-106
Q06611286 Aquaporin PIP1-2 OS=Arabi no no 0.929 0.741 0.865 1e-106
Q9XF59289 Aquaporin PIP1-2 OS=Zea m N/A no 0.929 0.733 0.862 1e-104
Q08451286 Probable aquaporin PIP-ty N/A no 0.925 0.737 0.864 1e-104
Q39196287 Probable aquaporin PIP1-4 no no 0.929 0.738 0.861 1e-104
Q6EU94289 Aquaporin PIP1-1 OS=Oryza no no 0.929 0.733 0.853 1e-104
P25794289 Probable aquaporin PIP-ty N/A no 0.934 0.737 0.816 1e-100
Q9AQU5292 Aquaporin PIP1-3/PIP1-4 O N/A no 0.929 0.726 0.846 1e-100
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 0.929 0.736 0.829 1e-99
Q9SXF8288 Aquaporin PIP 1-3 OS=Oryz no no 0.929 0.736 0.811 2e-97
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function desciption
 Score =  384 bits (985), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/217 (87%), Positives = 202/217 (93%), Gaps = 5/217 (2%)

Query: 1   MEGKEEDVKLGANKFSERQPIGTSAQ--SDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 58
           MEGKEEDV+LGANKFSERQPIGT+AQ   DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 60

Query: 59  MATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 118
           MATFLFLYITVLTVMGV+ S +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVT
Sbjct: 61  MATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVT 120

Query: 119 FGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDG 178
           FGL LARKLSLTRA+FYMVMQCLGA+CGAGVVKGF+    YE  GGGANVVA GYTKGDG
Sbjct: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ-KGLYETTGGGANVVAPGYTKGDG 179

Query: 179 LGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSP 215
           LGAEI+GTF+LVYTVFSATDAKRNARDSHVP  IL+P
Sbjct: 180 LGAEIVGTFILVYTVFSATDAKRNARDSHVP--ILAP 214
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9XF59|PIP12_MAIZE Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 Back     alignment and function description
>sp|Q9AQU5|PIP13_MAIZE Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXF8|PIP13_ORYSJ Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
89212808287 aquaporin 1 [Gossypium hirsutum] 0.934 0.742 0.930 1e-112
292653529267 aquaporin PIP1;13 [Gossypium hirsutum] 0.934 0.797 0.930 1e-112
300793582287 TPA_inf: aquaporin PIP1;4 [Gossypium hir 0.934 0.742 0.920 1e-112
292653527267 aquaporin PIP1;12, partial [Gossypium hi 0.934 0.797 0.920 1e-112
345462634299 aquaporin PIP1 [Dimocarpus longan] 0.934 0.712 0.889 1e-111
150416573287 aquaporin PIP1-2 [Gossypium hirsutum] 0.934 0.742 0.906 1e-110
257786547287 plasma membrane aquaporin 1 [Hevea brasi 0.934 0.742 0.897 1e-110
8071626287 putative aquaporin PIP1-3 [Vitis cinerea 0.934 0.742 0.893 1e-110
255537497287 Aquaporin PIP1.3, putative [Ricinus comm 0.934 0.742 0.902 1e-109
300793584278 TPA_inf: aquaporin PIP1;5 [Gossypium hir 0.934 0.766 0.906 1e-109
>gi|89212808|gb|ABD63904.1| aquaporin 1 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/215 (93%), Positives = 207/215 (96%), Gaps = 2/215 (0%)

Query: 1   MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMA 60
           MEGKEEDVKLGANKFSERQPIGTSAQ+DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF+A
Sbjct: 1   MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVA 60

Query: 61  TFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120
           TFLFLYITVLTVMGVS+S TKC+TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG
Sbjct: 61  TFLFLYITVLTVMGVSQSKTKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120

Query: 121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180
           LLLARKLSLTRAVFYM+MQCLGA+CGAGVVKGFEG   YE LGGGANVV HGYTKGDGLG
Sbjct: 121 LLLARKLSLTRAVFYMIMQCLGAICGAGVVKGFEGDSRYEMLGGGANVVNHGYTKGDGLG 180

Query: 181 AEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSP 215
           AEIIGTFVLVYTVFSATDAKRNARDSHVP  IL+P
Sbjct: 181 AEIIGTFVLVYTVFSATDAKRNARDSHVP--ILAP 213

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|292653529|gb|ADE34282.1| aquaporin PIP1;13 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|300793582|tpg|DAA33858.1| TPA_inf: aquaporin PIP1;4 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|292653527|gb|ADE34281.1| aquaporin PIP1;12, partial [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|345462634|gb|AEN95117.1| aquaporin PIP1 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|150416573|gb|ABR68794.1| aquaporin PIP1-2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|257786547|gb|ACV66985.1| plasma membrane aquaporin 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|8071626|gb|AAF71819.1|AF141899_1 putative aquaporin PIP1-3 [Vitis cinerea var. helleri x Vitis rupestris] Back     alignment and taxonomy information
>gi|255537497|ref|XP_002509815.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|223549714|gb|EEF51202.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|300793584|tpg|DAA33859.1| TPA_inf: aquaporin PIP1;5 [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.929 0.704 0.865 5.8e-98
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.929 0.741 0.860 2e-97
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.929 0.738 0.861 6.6e-97
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.929 0.741 0.855 8.4e-97
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.929 0.738 0.833 2.3e-94
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.807 0.657 0.727 8e-69
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.842 0.690 0.697 7.2e-68
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.837 0.670 0.695 2.4e-67
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.837 0.670 0.685 1.3e-66
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.807 0.641 0.699 4.5e-66
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 186/215 (86%), Positives = 200/215 (93%)

Query:     1 MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMA 60
             MEGKEEDV++GANKF ERQPIGTSAQSDKDYKEPPPAPLFEPGEL SWSF+RAGIAEF+A
Sbjct:     1 MEGKEEDVRVGANKFPERQPIGTSAQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIA 60

Query:    61 TFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120
             TFLFLYITVLTVMGV +S   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG
Sbjct:    61 TFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120

Query:   121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180
             L LARKLSLTRAV+Y+VMQCLGA+CGAGVVKGF+  K Y+ LGGGAN +AHGYTKG GLG
Sbjct:   121 LFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTIAHGYTKGSGLG 179

Query:   181 AEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSP 215
             AEIIGTFVLVYTVFSATDAKRNARDSHVP  IL+P
Sbjct:   180 AEIIGTFVLVYTVFSATDAKRNARDSHVP--ILAP 212
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;IDA;RCA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009414 "response to water deprivation" evidence=IEP;IMP
GO:0009651 "response to salt stress" evidence=RCA;IMP
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0015670 "carbon dioxide transport" evidence=IMP
GO:0006096 "glycolysis" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XSQ9PIP12_ORYSJNo assigned EC number0.87550.92980.7361yesno
Q9AQU5PIP13_MAIZENo assigned EC number0.84610.92980.7260N/Ano
Q9AR14PIP15_MAIZENo assigned EC number0.82940.92980.7361N/Ano
Q08451PIP1_SOLLCNo assigned EC number0.86440.92540.7377N/Ano
P61838PIP11_VICFANo assigned EC number0.86040.92980.7412N/Ano
Q9ATN0PIP16_MAIZENo assigned EC number0.81640.89910.6925N/Ano
Q41870PIP11_MAIZENo assigned EC number0.82020.92540.7351N/Ano
Q9XF59PIP12_MAIZENo assigned EC number0.86230.92980.7335N/Ano
P25794PIP2_PEANo assigned EC number0.81650.93420.7370N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.70680.80260.6376N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
pfam00230218 pfam00230, MIP, Major intrinsic protein 3e-68
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-47
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 9e-45
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 8e-25
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 9e-19
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 2e-18
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-17
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-13
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 9e-13
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-09
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 7e-07
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 6e-06
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-05
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 4e-05
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 5e-04
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  208 bits (532), Expect = 3e-68
 Identities = 84/170 (49%), Positives = 111/170 (65%), Gaps = 8/170 (4%)

Query: 44  ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
           EL+S SF+RA IAEF+AT LF++  V + +GV K        G+  +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKL-----YGGLLAVALAFGLALFTLVY 55

Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
           CT  ISG H+NPAVTF LL+ R++SL RA++Y++ Q LGA+CGA ++KG   +   +R G
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGV--TNGLQRAG 113

Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHV-PVSI 212
           G AN +A G   G     EII TF LVYTVF+ TD  RN    HV P++I
Sbjct: 114 GFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHVAPLAI 163

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 228
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00167256 aquaporin TIP5; Provisional 99.97
PLN00182283 putative aquaporin NIP4; Provisional 99.97
PRK05420231 aquaporin Z; Provisional 99.97
PLN00026298 aquaporin NIP; Provisional 99.97
PLN00166250 aquaporin TIP2; Provisional 99.97
PLN00027252 aquaporin TIP; Provisional 99.97
PLN00183274 putative aquaporin NIP7; Provisional 99.97
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.96
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.96
PLN00182283 putative aquaporin NIP4; Provisional 99.84
PLN00183274 putative aquaporin NIP7; Provisional 99.82
PLN00026298 aquaporin NIP; Provisional 99.82
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.81
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.8
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.78
PLN00184296 aquaporin NIP1; Provisional 99.75
PLN00166250 aquaporin TIP2; Provisional 99.74
PLN00027252 aquaporin TIP; Provisional 99.73
PRK05420231 aquaporin Z; Provisional 99.73
PLN00167256 aquaporin TIP5; Provisional 99.67
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.66
PTZ00016294 aquaglyceroporin; Provisional 99.65
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.65
KOG0224316 consensus Aquaporin (major intrinsic protein famil 98.88
COG2116265 FocA Formate/nitrite family of transporters [Inorg 87.56
PRK10805285 formate transporter; Provisional 86.74
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-36  Score=256.64  Aligned_cols=170  Identities=26%  Similarity=0.387  Sum_probs=149.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhhHHHHHHHHHHHHHhhhcCCCCcccChhhHHHHHHhhc
Q 027103           47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK  126 (228)
Q Consensus        47 ~~~~~~~~~aE~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~~~iSGahlNPAvTla~~l~g~  126 (228)
                      ...+.|++++||+||++|+++++++++....++..  ..++..+.++||+++++.+|+.+++||||+|||||+++++.||
T Consensus        28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~--~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~  105 (316)
T KOG0224|consen   28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGT--GGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGR  105 (316)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCC--CCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcC
Confidence            34689999999999999999999999887766432  3446677889999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHhhhHHHHHHHHHhhcCCcchhhcCCC--------------ccccCCCCchhHHHHHHHHHHHHHHHH
Q 027103          127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGG--------------ANVVAHGYTKGDGLGAEIIGTFVLVYT  192 (228)
Q Consensus       127 ~~~~~~~~yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~g--------------~~~~~~~~s~~~~f~~E~~~T~~L~~~  192 (228)
                      +||+|+++|+++|++||++|++.+|.+|++.. ....+|              ++.|.|..+.+++|+.|+++|.+|+.+
T Consensus       106 ~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i-~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~  184 (316)
T KOG0224|consen  106 LPWKKFPVYVLAQFIGAFLGAATVYGLYYDAI-NEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLC  184 (316)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998873 333322              234567899999999999999999999


Q ss_pred             HHHhccCCCCCCCCCCceeehHHHHhh
Q 027103          193 VFSATDAKRNARDSHVPVSILSPCHSL  219 (228)
Q Consensus       193 il~~~~~~~~~~~~~~p~~~g~~i~~~  219 (228)
                      +++++|++|+.+.++.|+++|++|..+
T Consensus       185 l~aI~D~rN~~p~g~~p~~iG~lv~~I  211 (316)
T KOG0224|consen  185 LFAITDKRNPIPTGLHPLVIGILVVAI  211 (316)
T ss_pred             eeEEecCCCCCCcchhHHHHHHHHHHH
Confidence            999999999888899999999998855

>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-74
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-74
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-74
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 8e-74
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-73
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-25
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 4e-25
2d57_A 301 Double Layered 2d Crystal Structure Of Aquaporin-4 1e-21
2zz9_A 301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 3e-21
3iyz_A 340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 3e-21
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 2e-20
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-17
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-17
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 5e-17
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 6e-16
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 2e-15
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 1e-08
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-07
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 3e-07
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-06
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 3e-06
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 4e-06
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 4e-06
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 5e-06
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 8e-06
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-05
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-05
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 3e-05
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 6e-05
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 2e-04
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 152/190 (80%), Gaps = 3/190 (1%)
Query: 26  QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
           Q  KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK    C +V
Sbjct: 13  QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 72
Query: 86  GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
           G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 73  GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 132
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
           G G+VK F     Y + GGGAN VA GY KG  LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 133 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 206 SHVPVSILSP 215
           SHVP  IL+P
Sbjct: 192 SHVP--ILAP 199
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-92
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 3e-04
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 6e-82
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 3e-04
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 2e-73
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 6e-71
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 3e-04
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 3e-70
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-04
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 4e-69
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 7e-69
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 6e-04
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 4e-68
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 2e-67
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 4e-04
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-65
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-04
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 3e-50
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-31
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 4e-30
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 9e-04
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  272 bits (697), Expect = 2e-92
 Identities = 134/195 (68%), Positives = 150/195 (76%), Gaps = 1/195 (0%)

Query: 16  SERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV 75
            E      + Q  KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G 
Sbjct: 26  KEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGH 85

Query: 76  SKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFY 135
           SK    C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+ L RA+ Y
Sbjct: 86  SKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVY 145

Query: 136 MVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 195
           M+ QCLGA+CG G+VK F     Y + GGGAN VA GY KG  LGAEIIGTFVLVYTVFS
Sbjct: 146 MIAQCLGAICGVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 204

Query: 196 ATDAKRNARDSHVPV 210
           ATD KR+ARDSHVP+
Sbjct: 205 ATDPKRSARDSHVPI 219
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.85
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.78
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.77
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.76
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.75
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.73
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.73
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.73
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.73
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.71
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.7
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.69
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.67
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=6.5e-40  Score=286.18  Aligned_cols=193  Identities=68%  Similarity=1.152  Sum_probs=152.2

Q ss_pred             cccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhhHHHHHHHHHHHHHhhhcC
Q 027103           28 DKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAG  107 (228)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aE~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~~~  107 (228)
                      .+++.+|++.+..+.++.++++++|++++||+||++|+|++++++.......++....+++.+++++|+++++.+|++++
T Consensus        38 ~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~  117 (304)
T 3cn5_A           38 GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG  117 (304)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeec
Confidence            47888888778888889999999999999999999999999998876554333334567888999999999999999999


Q ss_pred             CCCcccChhhHHHHHHhhccchhhHHHHHHHHhhhHHHHHHHHHhhcCCcchhhcCCCccccCCCCchhHHHHHHHHHHH
Q 027103          108 ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTF  187 (228)
Q Consensus       108 iSGahlNPAvTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~~~T~  187 (228)
                      +||||+|||||+++++.|+++|.+++.|+++|++||++|+++++.++++. ++..+.+.+.+.++.+.+++|+.|+++||
T Consensus       118 iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~-~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf  196 (304)
T 3cn5_A          118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTF  196 (304)
T ss_dssp             TTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHTTTTCCCCCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcccccCCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999876 55555566667778899999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCC----CCceeehHHHHhhhh
Q 027103          188 VLVYTVFSATDAKRNARDS----HVPVSILSPCHSLSS  221 (228)
Q Consensus       188 ~L~~~il~~~~~~~~~~~~----~~p~~~g~~i~~~~~  221 (228)
                      +|+++|+.++|++|..+++    ..|+.+|++|.++.+
T Consensus       197 iLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l  234 (304)
T 3cn5_A          197 VLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHL  234 (304)
T ss_dssp             HHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHH
Confidence            9999999999877655544    567777777765433
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 228
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-39
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 6e-05
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 9e-34
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 0.004
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 5e-27
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 8e-05
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 4e-23
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-04
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  133 bits (336), Expect = 3e-39
 Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 6/173 (3%)

Query: 44  ELKSWSFYRAGIAEFMATFLFLYITVLTVMG----VSKSNTKCSTVGIQGIAWAFGGMIF 99
           E K   F+RA +AEF+A  LF++I++ + +G    +  + T  +      ++ AFG  I 
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 100 ALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNY 159
            L      ISG H+NPAVT GLLL+ ++S+ RA+ Y++ QC+GA+    ++ G   S   
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123

Query: 160 ERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
                G N +A G   G GLG EIIGT  LV  V + TD +R       P++I
Sbjct: 124 N--SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAI 174
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.97
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.71
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.71
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.7
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.64
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-34  Score=241.45  Aligned_cols=167  Identities=32%  Similarity=0.444  Sum_probs=143.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhhHHHHHHHHHHHHHhhhcCCCCcccChhhHHHHHHhhcc
Q 027103           48 WSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKL  127 (228)
Q Consensus        48 ~~~~~~~~aE~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~  127 (228)
                      .++||++++||+||++++|++++++.....     ...+.+.+++++|++++..+++++++||||+|||||+++++.|++
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~-----~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i   76 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAP-----GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQM   76 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC------CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCC
Confidence            468999999999999999999987754322     234567789999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHhhhHHHHHHHHHhhcCCcchhhcCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 027103          128 SLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSH  207 (228)
Q Consensus       128 ~~~~~~~yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~~~T~~L~~~il~~~~~~~~~~~~~  207 (228)
                      +|++.+.|+++|++||++|+++.+.++++.. +. ....+.+.++.+.+++++.|++.|++|+++++.+.|++++.+...
T Consensus        77 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~  154 (234)
T d1ymga1          77 SLLRAICYMVAQLLGAVAGAAVLYSVTPPAV-RG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGS  154 (234)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSCTTT-CT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCC
T ss_pred             ChhheeeeeehHHHHHHHHHHHHHHHcCccc-cc-cccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcc
Confidence            9999999999999999999999999998763 22 223445678889999999999999999999999999888777677


Q ss_pred             CceeehHHHHhhhh
Q 027103          208 VPVSILSPCHSLSS  221 (228)
Q Consensus       208 ~p~~~g~~i~~~~~  221 (228)
                      .|+.+|+.+.+...
T Consensus       155 ~~l~ig~~v~~~~~  168 (234)
T d1ymga1         155 VALAVGFSLTLGHL  168 (234)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             eeEeehHHHHHHHH
Confidence            78888888885533
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure