Citrus Sinensis ID: 027158

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MDCQCLDVAKDCIKVLQKqfpeskrvgRLEGILLEAKGLWAEAEKAYSSllednpldpvlHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELilsqptvplyhLAYADVLYTLGGVDNILLAKKYYAStidltggkntkaLFGICLCSSAIAQLtkgrnkedkespELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS
Flexible Loop (DISEMBL)
MDCQCLDVAKDCIKvlqkqfpeskrvgrlEGILLEAKGLWAEAEKAYSSllednpldPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTkgrnkedkesPELQSLAAAALEKDYKQRAPAKLLLLTSalkslkts
Low Complexity Region (SEG)
MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPaklllltsalkslkts
Disordered region (IsUnstruct)
**CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL***********************************************
Disordered Region (DISOPRED)
MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI****************LQSLAAAALE*****************LKSLK**
Disordered Region (DISEMBL)
MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ**************LQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS
Disordered Region (DISPRO)
*DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR**EDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q6TGY8	297	ER membrane protein compl	yes	no	0.933	0.713	0.408	5e-41
Q6INS3	297	ER membrane protein compl	N/A	no	0.907	0.693	0.405	4e-40
Q5M7J9	297	ER membrane protein compl	yes	no	0.907	0.693	0.400	1e-39
Q8AVU9	297	ER membrane protein compl	N/A	no	0.907	0.693	0.396	3e-39
Q5E993	297	ER membrane protein compl	yes	no	0.881	0.673	0.412	1e-38
Q15006	297	ER membrane protein compl	yes	no	0.881	0.673	0.407	1e-38
Q5R882	297	ER membrane protein compl	yes	no	0.881	0.673	0.407	2e-38
Q9CRD2	297	ER membrane protein compl	yes	no	0.881	0.673	0.407	4e-38
B0BNG0	297	ER membrane protein compl	yes	no	0.881	0.673	0.402	1e-37
Q86K48	322	ER membrane protein compl	yes	no	0.704	0.496	0.366	4e-23

>sp|Q6TGY8|EMC2_DANRE ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2 SV=1

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 134/213 (62%), Gaps = 1/213 (0%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           +DC   D+A  C++ L++QFP+S RV RL G+ LEA   + +A K Y S+L+D+P +   
Sbjct: 64  LDCSRDDLAWSCLQELKRQFPDSHRVKRLAGMRLEALERYDDANKLYDSILQDDPTNTAA 123

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
            KR++ I +AQG    AI  LN+YLE F+ D +AW EL+E+Y++   Y +AAFC EEL++
Sbjct: 124 RKRKICILRAQGKSSEAIRELNEYLEQFVGDQEAWHELSELYINEHDYAKAAFCLEELMM 183

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           + P   LY   YA+V YT GG++N+ LA+KY+A  + L   +N +ALFG+ + +S IA  
Sbjct: 184 TNPHNHLYCEQYAEVKYTQGGLENLELARKYFAQALKLN-NRNMRALFGLYMSASHIAAS 242

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAK 213
            K   K  K++ +  + AAA + + Y+     K
Sbjct: 243 PKVSAKVKKDNVKYAAWAAAQISRAYQMAGRGK 275

Danio rerio (taxid: 7955)

>sp|Q6INS3|EMC2A_XENLA ER membrane protein complex subunit 2-A OS=Xenopus laevis GN=emc2-a PE=2 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 130/207 (62%), Gaps = 1/207 (0%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           +DC   D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+D+P +   
Sbjct: 64  LDCGRDDIAMSCLQELRRQFPGSHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAA 123

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
            KR++AI KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL
Sbjct: 124 RKRKIAIRKAQGRNSEAIRELNEYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELIL 183

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           + P    Y+  +A+V YT GG++N+ L++KY++  + L    N +ALFG+ + S  IA  
Sbjct: 184 TNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKL-NNHNMRALFGLYISSVHIASN 242

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYK 207
            K   K  K++ +  + AA+ ++K Y+
Sbjct: 243 PKASAKMKKDNVKYATWAASQIKKAYQ 269

Xenopus laevis (taxid: 8355)

>sp|Q5M7J9|EMC2_XENTR ER membrane protein complex subunit 2 OS=Xenopus tropicalis GN=emc2 PE=2 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 129/207 (62%), Gaps = 1/207 (0%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           +DC   D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+D+P +   
Sbjct: 64  LDCGRDDIAMSCLQELRRQFPGSHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAA 123

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
            KR++AI KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL
Sbjct: 124 RKRKIAIRKAQGRNAEAIRELNEYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELIL 183

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           + P    Y+  +A+V YT GG++N+ L++KY++  + L    N +ALFG+ + S  IA  
Sbjct: 184 TNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKL-NNHNMRALFGLYISSVHIASN 242

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYK 207
            K   K  K++ +  + A + ++K Y+
Sbjct: 243 PKASAKMKKDNVKYATWATSQIKKAYQ 269

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVU9|EMC2B_XENLA ER membrane protein complex subunit 2-B OS=Xenopus laevis GN=emc2-b PE=2 SV=1

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 129/207 (62%), Gaps = 1/207 (0%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           +DC   D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+D+P +   
Sbjct: 64  LDCGRDDIAMSCLQELRRQFPGSHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAT 123

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
            KR++AI KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL
Sbjct: 124 RKRKIAIRKAQGRNAEAIRELNEYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELIL 183

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           + P    Y+  +A+V YT GG++N+ L++KY++  + L    + +ALFG+ + S  IA  
Sbjct: 184 TNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKL-NNHSMRALFGLYMSSVHIASN 242

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYK 207
            K   K  K++ +  + A + ++K Y+
Sbjct: 243 PKASAKMKKDNVKYATWATSQIKKAYQ 269

Xenopus laevis (taxid: 8355)

>sp|Q5E993|EMC2_BOVIN ER membrane protein complex subunit 2 OS=Bos taurus GN=EMC2 PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 128/201 (63%), Gaps = 1/201 (0%)

Query: 7   DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
           D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct: 70  DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIA 129

Query: 67  IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
           I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct: 130 IRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPYNH 189

Query: 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
           LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct: 190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLN-NRNMRALFGLYMSASHIASNPKASAK 248

Query: 187 EDKESPELQSLAAAALEKDYK 207
             K++ +  S AA+ + K Y+
Sbjct: 249 TKKDNMKYASWAASQINKAYQ 269

Bos taurus (taxid: 9913)

>sp|Q15006|EMC2_HUMAN ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 128/201 (63%), Gaps = 1/201 (0%)

Query: 7   DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
           D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct: 70  DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIA 129

Query: 67  IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
           I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct: 130 IRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNH 189

Query: 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
           LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct: 190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLN-NRNMRALFGLYMSASHIASNPKASAK 248

Query: 187 EDKESPELQSLAAAALEKDYK 207
             K++ +  S AA+ + + Y+
Sbjct: 249 TKKDNMKYASWAASQINRAYQ 269

Homo sapiens (taxid: 9606)

>sp|Q5R882|EMC2_PONAB ER membrane protein complex subunit 2 OS=Pongo abelii GN=EMC2 PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 128/201 (63%), Gaps = 1/201 (0%)

Query: 7   DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
           D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct: 70  DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIA 129

Query: 67  IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
           I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct: 130 IRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNH 189

Query: 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
           LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct: 190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLN-NRNMRALFGLYMSASHIASNPKASAK 248

Query: 187 EDKESPELQSLAAAALEKDYK 207
             K++ +  S AA+ + + Y+
Sbjct: 249 TKKDNMKYASWAASQINRAYQ 269

Pongo abelii (taxid: 9601)

>sp|Q9CRD2|EMC2_MOUSE ER membrane protein complex subunit 2 OS=Mus musculus GN=Emc2 PE=2 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 127/201 (63%), Gaps = 1/201 (0%)

Query: 7   DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
           D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct: 70  DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIA 129

Query: 67  IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
           I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct: 130 IRKAQGKTVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNH 189

Query: 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
           LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct: 190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLN-NRNMRALFGLYMSASHIASNPKASAK 248

Query: 187 EDKESPELQSLAAAALEKDYK 207
             K++ +  S AA  + + Y+
Sbjct: 249 MKKDNIKYASWAANQINRAYQ 269

Mus musculus (taxid: 10090)

>sp|B0BNG0|EMC2_RAT ER membrane protein complex subunit 2 OS=Rattus norvegicus GN=Emc2 PE=2 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 125/201 (62%), Gaps = 1/201 (0%)

Query: 7   DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
           D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct: 70  DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIA 129

Query: 67  IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
           I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct: 130 IRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNH 189

Query: 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
           LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct: 190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLN-NRNMRALFGLYMSASHIASNPKASAK 248

Query: 187 EDKESPELQSLAAAALEKDYK 207
             K++      AA  + + Y+
Sbjct: 249 MKKDNIRYAGWAANQINRAYQ 269

Rattus norvegicus (taxid: 10116)

>sp|Q86K48|EMC2_DICDI ER membrane protein complex subunit 2 OS=Dictyostelium discoideum GN=emc2 PE=3 SV=1

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 1   MDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV 59
           +DC      K   + L+ +F  +S RV R+  + LE+    AEA + + S+L+  P D +
Sbjct: 84  LDCGDHTNPKKLFEQLKSKFGKDSVRVQRIHALCLESNNQLAEALQIFESILKKYPSDAL 143

Query: 60  LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 119
             KR+VAI K QGN   AI+ LN YL+ +M D +AW EL+  ++S   Y  A +C EE++
Sbjct: 144 SMKRQVAIFKGQGNLSKAIQVLNAYLQIYMCDLEAWLELSSFHISYLSYSTALYCLEEVL 203

Query: 120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160
           L+ P   ++++ YA+ LY LGG +N   A +YY   ++L  
Sbjct: 204 LNAPINFVFYIKYAEPLYCLGGNENYNSAVQYYTHALELNS 244

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
225451281	300	PREDICTED: tetratricopeptide repeat prot	0.991	0.75	0.857	1e-109
449442911	303	PREDICTED: ER membrane protein complex s	1.0	0.749	0.833	1e-108
224130686	302	predicted protein [Populus trichocarpa]	1.0	0.751	0.823	1e-108
418731088	300	O-linked GlcNAc transferase [Solanum tub	0.991	0.75	0.826	1e-108
388505014	302	unknown [Medicago truncatula]	1.0	0.751	0.819	1e-107
224125612	302	predicted protein [Populus trichocarpa]	1.0	0.751	0.814	1e-106
357512253	302	Tetratricopeptide repeat protein [Medica	1.0	0.751	0.819	1e-106
255542336	302	conserved hypothetical protein [Ricinus	1.0	0.751	0.837	1e-106
356505931	302	PREDICTED: tetratricopeptide repeat prot	1.0	0.751	0.819	1e-106
388510600	302	unknown [Medicago truncatula]	1.0	0.751	0.810	1e-105

>gi|225451281|ref|XP_002277809.1| PREDICTED: tetratricopeptide repeat protein 35 [Vitis vinifera] gi|298204889|emb|CBI34196.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/225 (85%), Positives = 208/225 (92%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQCLDVAKDCIKVLQK+FPESKRVGRLEG+LLE+KG WAEAEKAYSSLLE+NP D V+
Sbjct: 75  MDCQCLDVAKDCIKVLQKRFPESKRVGRLEGMLLESKGSWAEAEKAYSSLLEENPFDQVV 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
            KRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA+CYEELIL
Sbjct: 135 LKRRVAMAKAQGNMSGAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAYCYEELIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           SQPT+PLYHLAYA+VLYTLGG++N+  AKKYYASTIDLTGGKNT+ALFGICLC+SAI QL
Sbjct: 195 SQPTLPLYHLAYAEVLYTLGGLENLQTAKKYYASTIDLTGGKNTRALFGICLCTSAIGQL 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLK 225
           TKGRNKE+KESPEL SLAA ALEK YKQRAP KL LL SALK LK
Sbjct: 255 TKGRNKEEKESPELHSLAATALEKIYKQRAPTKLPLLNSALKGLK 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442911|ref|XP_004139224.1| PREDICTED: ER membrane protein complex subunit 2-like [Cucumis sativus] gi|449482954|ref|XP_004156453.1| PREDICTED: ER membrane protein complex subunit 2-like [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/228 (83%), Positives = 210/228 (92%), Gaps = 1/228 (0%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           +DCQ +DVAKDCIKVLQK+FP+SKRVGRLE +LLEAKGLWAEAEKAY+SLLE+NP D ++
Sbjct: 75  LDCQAIDVAKDCIKVLQKKFPQSKRVGRLEAMLLEAKGLWAEAEKAYASLLEENPCDQIV 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           HKRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAE+Y+SLQMYKQA FCYEELIL
Sbjct: 135 HKRRVALAKAQGNIAGAIEWLNKYLETFMADHDAWRELAELYISLQMYKQAVFCYEELIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           SQPTVPL+HLAYADVLYTLGG++N+  AKKYYASTIDLTGGKNT+ALFGICLC+SAIAQL
Sbjct: 195 SQPTVPLFHLAYADVLYTLGGLENLQTAKKYYASTIDLTGGKNTRALFGICLCTSAIAQL 254

Query: 181 TKGRNKEDKESP-ELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS 227
           T+GRNKEDKE P ELQSLAA ALEKDYKQRAP KL LL+S LK LK S
Sbjct: 255 TRGRNKEDKEGPAELQSLAATALEKDYKQRAPHKLSLLSSVLKGLKVS 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130686|ref|XP_002328351.1| predicted protein [Populus trichocarpa] gi|222838066|gb|EEE76431.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/227 (82%), Positives = 207/227 (91%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQ L+VAKDC+ VL+K+FPESKRVGRLE +LLEAKG W EAEKAYSSLLEDNP D V+
Sbjct: 75  MDCQSLEVAKDCVNVLRKKFPESKRVGRLEALLLEAKGSWGEAEKAYSSLLEDNPFDQVV 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           HKRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL
Sbjct: 135 HKRRVALAKAQGNLSGAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           SQPTVPL+HLAYADVLYTLGG++N+  A+KYY+STIDLTGGKNT+ALFGICLC+SAIAQ 
Sbjct: 195 SQPTVPLFHLAYADVLYTLGGLENLQTARKYYSSTIDLTGGKNTRALFGICLCTSAIAQF 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS 227
           +KGRNKEDK+ P+LQSLA AALEK+YKQRA  KL +LTSA KSLK S
Sbjct: 255 SKGRNKEDKDCPDLQSLATAALEKEYKQRASGKLTVLTSAFKSLKVS 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731088|gb|AFX67010.1| O-linked GlcNAc transferase [Solanum tuberosum]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/225 (82%), Positives = 209/225 (92%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQ +DVAKDCIKVLQ++FP SKRVGRLE +LLEA+GLW+EAE AYSSLLE+NP D V+
Sbjct: 75  MDCQSIDVAKDCIKVLQRKFPGSKRVGRLEAMLLEARGLWSEAENAYSSLLEENPFDQVV 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           HKRRVA+AKAQGN   AI+WLNKYL+ FMADH+AWRELAEIYVSLQMYKQAAFCYEELIL
Sbjct: 135 HKRRVAMAKAQGNTSAAIDWLNKYLDLFMADHEAWRELAEIYVSLQMYKQAAFCYEELIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           SQPTVPLYHLAYADVLYTLGG++N+  AKKYYASTIDLTGGKNT+ALFGICLC+SAI QL
Sbjct: 195 SQPTVPLYHLAYADVLYTLGGLENLQTAKKYYASTIDLTGGKNTRALFGICLCTSAIGQL 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLK 225
           TKGRNKEDKESPELQSL+A ALEKDYKQRAP++L +L+S L+SLK
Sbjct: 255 TKGRNKEDKESPELQSLSAMALEKDYKQRAPSRLSVLSSTLRSLK 299

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505014|gb|AFK40573.1| unknown [Medicago truncatula]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 205/227 (90%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQCLDVA+DC K L+K+F ESKRVGRLE +LLEAKG W EAEKAYSSLLEDNPLD ++
Sbjct: 75  MDCQCLDVAQDCTKALRKRFSESKRVGRLEAMLLEAKGSWEEAEKAYSSLLEDNPLDQII 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           HKRRVA+AKAQGN   AIEWLNKYLE FMADHDAWRELAEIY SLQMYKQAAFCYEE+IL
Sbjct: 135 HKRRVAMAKAQGNISGAIEWLNKYLEIFMADHDAWRELAEIYTSLQMYKQAAFCYEEVIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           +QPTVPLYHLAYADVLYT+GG++N+  AKKYYASTIDLTGGKNT+ALFGICLC+SAIAQL
Sbjct: 195 AQPTVPLYHLAYADVLYTIGGLENVQTAKKYYASTIDLTGGKNTRALFGICLCTSAIAQL 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS 227
           TKG+NKEDKE  +LQSLAA ALE+DYKQRAP KL  LT+ALKSL  S
Sbjct: 255 TKGKNKEDKEGSQLQSLAAKALERDYKQRAPDKLPQLTTALKSLTLS 301

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125612|ref|XP_002319632.1| predicted protein [Populus trichocarpa] gi|222858008|gb|EEE95555.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/227 (81%), Positives = 204/227 (89%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQ L+VAKDC+  LQK+FPESKRVGRLE +L EAKG W EAEKAYSSLLEDNP D V+
Sbjct: 75  MDCQSLEVAKDCVNALQKKFPESKRVGRLEAMLFEAKGSWGEAEKAYSSLLEDNPFDQVV 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           HKRRVA+AKAQGN   AI+ LNKYLETFMADHDAWRELAEIY+SLQMYKQAAFCYEELIL
Sbjct: 135 HKRRVALAKAQGNLTGAIDLLNKYLETFMADHDAWRELAEIYISLQMYKQAAFCYEELIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           SQ TVPLYHLAYADVLYTLGG++N+L AKKYY+STIDLTGGKNT+ALFGICLC+SAIAQL
Sbjct: 195 SQHTVPLYHLAYADVLYTLGGIENLLTAKKYYSSTIDLTGGKNTRALFGICLCTSAIAQL 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS 227
           +KGRNKEDK+SP+LQSLA AALEK+YKQRA  KL + TS  KSLK S
Sbjct: 255 SKGRNKEDKDSPDLQSLATAALEKEYKQRASDKLSVFTSGFKSLKVS 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512253|ref|XP_003626415.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355501430|gb|AES82633.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 205/227 (90%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQCLDVA+DC K L+K+F ESKRVGRLE +LLEAKG W +AEKAYSSLLEDNPLD ++
Sbjct: 75  MDCQCLDVAQDCTKALRKRFSESKRVGRLEAMLLEAKGSWEKAEKAYSSLLEDNPLDQII 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           HKRRVA+AKAQGN   AIEWLNKYLE FMADHDAWRELAEIY SLQMYKQAAFCYEE+IL
Sbjct: 135 HKRRVAMAKAQGNISGAIEWLNKYLEIFMADHDAWRELAEIYSSLQMYKQAAFCYEEVIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           +QPTVPLYHLAYADVLYTLGG++N+  AKKYYASTIDLTGGKNT+ALFGICLC+SAIAQL
Sbjct: 195 AQPTVPLYHLAYADVLYTLGGLENVQTAKKYYASTIDLTGGKNTRALFGICLCTSAIAQL 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS 227
           TKG+NKEDKE  +LQSLAA ALE+DYKQRAP KL  LT+ALKSL  S
Sbjct: 255 TKGKNKEDKEGSQLQSLAAKALERDYKQRAPDKLPQLTTALKSLTLS 301

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542336|ref|XP_002512231.1| conserved hypothetical protein [Ricinus communis] gi|223548192|gb|EEF49683.1| conserved hypothetical protein [Ricinus communis]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/227 (83%), Positives = 206/227 (90%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQ LDVAKDCI VLQK+FPESKRVGRLEG+LLEAKG WAEAEKAY+SLLEDN LD V+
Sbjct: 75  MDCQSLDVAKDCITVLQKRFPESKRVGRLEGMLLEAKGSWAEAEKAYASLLEDNQLDQVI 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
            KRRVA+AKAQGN   AIE LNKYLE FMAD DAWRELAE+YVSLQMYKQAAFCYEELIL
Sbjct: 135 FKRRVAVAKAQGNVSGAIELLNKYLEIFMADSDAWRELAEMYVSLQMYKQAAFCYEELIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           SQPTVPLYHLAYADVLYTLGG++N+  AKKYY+STIDLTGG NT+ALFG+CLC+SAIAQL
Sbjct: 195 SQPTVPLYHLAYADVLYTLGGLENLQAAKKYYSSTIDLTGGMNTRALFGVCLCTSAIAQL 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS 227
           TKGRNKEDK+SPELQSLA AALEK+YKQRA  KL +L SALKSLK S
Sbjct: 255 TKGRNKEDKDSPELQSLATAALEKEYKQRASNKLPVLASALKSLKIS 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505931|ref|XP_003521742.1| PREDICTED: tetratricopeptide repeat protein 35-A-like [Glycine max]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 204/227 (89%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQCLDVAKDC KVLQK+FPESKRVGRLE +LLEAKG W  AEKAY+SLLEDNPLD  +
Sbjct: 75  MDCQCLDVAKDCTKVLQKRFPESKRVGRLEAMLLEAKGSWELAEKAYTSLLEDNPLDQAI 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           HKRRVA+AKAQG    AI+WLNKYLETFMADHDAWRELAEIY+SLQMYKQAAFCYEELIL
Sbjct: 135 HKRRVAMAKAQGKISVAIDWLNKYLETFMADHDAWRELAEIYISLQMYKQAAFCYEELIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           SQPTVPLYHLAYADVLYTLGG++N+  AKKYY+STIDLTGGKNT+ALFGICLC+SA+ QL
Sbjct: 195 SQPTVPLYHLAYADVLYTLGGLENLQTAKKYYSSTIDLTGGKNTRALFGICLCTSAVTQL 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS 227
           TKG++KEDKE  +LQSLAA  LEKDYKQRAP KL  LT+ALKSL  S
Sbjct: 255 TKGKSKEDKEGSQLQSLAAKVLEKDYKQRAPDKLPQLTTALKSLTLS 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510600|gb|AFK43366.1| unknown [Medicago truncatula]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/227 (81%), Positives = 204/227 (89%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
           MDCQCLDVA+DC K L+K+F ESKRVGRL+ +LLEAKG W +AEKAYSSLLEDNPLD ++
Sbjct: 75  MDCQCLDVAQDCTKALRKRFSESKRVGRLKAMLLEAKGSWEKAEKAYSSLLEDNPLDQII 134

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           HKRRVA+AKAQGN   AIEWLNKYLE FMADHDAWRELAEIY SLQMYKQAAFCYEE+IL
Sbjct: 135 HKRRVAMAKAQGNISGAIEWLNKYLEIFMADHDAWRELAEIYSSLQMYKQAAFCYEEVIL 194

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
           +QPTVPLYHLAYADVLYTLGG++N+  AKKYYASTIDLTGGKNT+ALFGICLC+SAIAQL
Sbjct: 195 AQPTVPLYHLAYADVLYTLGGLENVQTAKKYYASTIDLTGGKNTRALFGICLCTSAIAQL 254

Query: 181 TKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS 227
            KG+NKEDKE  +LQSLAA ALE+DYKQRAP KL  LT+ALKSL  S
Sbjct: 255 AKGKNKEDKEGSQLQSLAAKALERDYKQRAPDKLPQLTTALKSLTLS 301

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2114855	303	AT3G04830 [Arabidopsis thalian	0.929	0.696	0.784	2.8e-89
TAIR|locus:2147555	316	AT5G28220 [Arabidopsis thalian	0.929	0.667	0.785	2e-88
ZFIN|ZDB-GENE-040625-82	297	emc2 "ER membrane protein comp	0.907	0.693	0.415	8.7e-40
UNIPROTKB|Q6INS3	297	emc2-a "ER membrane protein co	0.907	0.693	0.405	2.6e-38
UNIPROTKB|Q5M7J9	297	emc2 "ER membrane protein comp	0.907	0.693	0.400	7e-38
UNIPROTKB|Q5E993	297	EMC2 "ER membrane protein comp	0.881	0.673	0.412	1.9e-37
UNIPROTKB|Q8AVU9	297	emc2-b "ER membrane protein co	0.907	0.693	0.396	2.4e-37
UNIPROTKB|Q15006	297	EMC2 "ER membrane protein comp	0.881	0.673	0.407	3.9e-37
UNIPROTKB|F1S1G1	297	EMC2 "Uncharacterized protein"	0.881	0.673	0.407	3.9e-37
UNIPROTKB|Q5R882	297	EMC2 "ER membrane protein comp	0.881	0.673	0.407	3.9e-37

TAIR|locus:2114855 AT3G04830 [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 167/213 (78%), Positives = 196/213 (92%)

Query:     1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
             MDCQ L VA++CIKVL+K+FPESKRVG+LE +LLEAKG+W EAEKAY+SLLEDNPLD V+
Sbjct:    75 MDCQSLGVAQNCIKVLKKKFPESKRVGKLEALLLEAKGMWEEAEKAYTSLLEDNPLDQVI 134

Query:    61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
             HKR+VA+AKAQG    AIE LNKYLE FMADHDAWRELAEIYVSLQMYKQAAFCYEELIL
Sbjct:   135 HKRKVAMAKAQGKSSLAIEHLNKYLEVFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194

Query:   121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
             +QPT+PLYHLAYADVLYT+GG++N++ A+KYYA+TIDLTGGK+T+AL GICLC SAIAQ+
Sbjct:   195 TQPTLPLYHLAYADVLYTIGGLENLIAARKYYAATIDLTGGKSTRALLGICLCGSAIAQI 254

Query:   181 TKGRNKEDKE--SPELQSLAAAALEKDYKQRAP 211
             +KGRNKEDK+  +PELQSLAA ALE++YKQ+AP
Sbjct:   255 SKGRNKEDKDMAAPELQSLAATALEREYKQKAP 287

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2147555 AT5G28220 [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 168/214 (78%), Positives = 192/214 (89%)

Query:     1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
             MDCQCL VA+ CIK LQ +FP SKRVGRLE +LLEAKGLW EAE+AY+SLLEDNPLD  +
Sbjct:    88 MDCQCLGVAQSCIKALQTKFPGSKRVGRLEALLLEAKGLWGEAEEAYASLLEDNPLDQAI 147

Query:    61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
             HKRRVAI+KA G    AIE LNKYLE FMADHDAWRELAE+Y+SLQMYKQAAFCYEELIL
Sbjct:   148 HKRRVAISKALGKPSIAIELLNKYLELFMADHDAWRELAELYLSLQMYKQAAFCYEELIL 207

Query:   121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
             SQPTVPLYHLAYA+VLYT+GGV+NI+ A+KYYA+T+DLTGGKNT+AL GICLC+SAIAQL
Sbjct:   208 SQPTVPLYHLAYAEVLYTIGGVENIISARKYYAATVDLTGGKNTRALLGICLCASAIAQL 267

Query:   181 TKGRNKEDKES---PELQSLAAAALEKDYKQRAP 211
             +KGRNKEDK++   PEL SLAAAA+EK+YKQ+AP
Sbjct:   268 SKGRNKEDKDATAAPELHSLAAAAVEKEYKQKAP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040625-82 emc2 "ER membrane protein complex subunit 2" [Danio rerio (taxid:7955)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 86/207 (41%), Positives = 133/207 (64%)

Query:     1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
             +DC   D+A  C++ L++QFP+S RV RL G+ LEA   + +A K Y S+L+D+P +   
Sbjct:    64 LDCSRDDLAWSCLQELKRQFPDSHRVKRLAGMRLEALERYDDANKLYDSILQDDPTNTAA 123

Query:    61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
              KR++ I +AQG    AI  LN+YLE F+ D +AW EL+E+Y++   Y +AAFC EEL++
Sbjct:   124 RKRKICILRAQGKSSEAIRELNEYLEQFVGDQEAWHELSELYINEHDYAKAAFCLEELMM 183

Query:   121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
             + P   LY   YA+V YT GG++N+ LA+KY+A  + L   +N +ALFG+ + +S IA  
Sbjct:   184 TNPHNHLYCEQYAEVKYTQGGLENLELARKYFAQALKLNN-RNMRALFGLYMSASHIAAS 242

Query:   181 TKGRNKEDKESPELQSLAAAALEKDYK 207
              K   K  K++ +  + AAA + + Y+
Sbjct:   243 PKVSAKVKKDNVKYAAWAAAQISRAYQ 269

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q6INS3 emc2-a "ER membrane protein complex subunit 2-A" [Xenopus laevis (taxid:8355)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 84/207 (40%), Positives = 130/207 (62%)

Query:     1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
             +DC   D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+D+P +   
Sbjct:    64 LDCGRDDIAMSCLQELRRQFPGSHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAA 123

Query:    61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
              KR++AI KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL
Sbjct:   124 RKRKIAIRKAQGRNSEAIRELNEYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELIL 183

Query:   121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
             + P    Y+  +A+V YT GG++N+ L++KY++  + L    N +ALFG+ + S  IA  
Sbjct:   184 TNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNN-HNMRALFGLYISSVHIASN 242

Query:   181 TKGRNKEDKESPELQSLAAAALEKDYK 207
              K   K  K++ +  + AA+ ++K Y+
Sbjct:   243 PKASAKMKKDNVKYATWAASQIKKAYQ 269

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|Q5M7J9 emc2 "ER membrane protein complex subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 83/207 (40%), Positives = 129/207 (62%)

Query:     1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
             +DC   D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+D+P +   
Sbjct:    64 LDCGRDDIAMSCLQELRRQFPGSHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAA 123

Query:    61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
              KR++AI KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL
Sbjct:   124 RKRKIAIRKAQGRNAEAIRELNEYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELIL 183

Query:   121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
             + P    Y+  +A+V YT GG++N+ L++KY++  + L    N +ALFG+ + S  IA  
Sbjct:   184 TNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNN-HNMRALFGLYISSVHIASN 242

Query:   181 TKGRNKEDKESPELQSLAAAALEKDYK 207
              K   K  K++ +  + A + ++K Y+
Sbjct:   243 PKASAKMKKDNVKYATWATSQIKKAYQ 269

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|Q5E993 EMC2 "ER membrane protein complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 83/201 (41%), Positives = 128/201 (63%)

Query:     7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
             D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct:    70 DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIA 129

Query:    67 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
             I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct:   130 IRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPYNH 189

Query:   127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
             LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct:   190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLNN-RNMRALFGLYMSASHIASNPKASAK 248

Query:   187 EDKESPELQSLAAAALEKDYK 207
               K++ +  S AA+ + K Y+
Sbjct:   249 TKKDNMKYASWAASQINKAYQ 269

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q8AVU9 emc2-b "ER membrane protein complex subunit 2-B" [Xenopus laevis (taxid:8355)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/207 (39%), Positives = 129/207 (62%)

Query:     1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
             +DC   D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+D+P +   
Sbjct:    64 LDCGRDDIAMSCLQELRRQFPGSHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAT 123

Query:    61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
              KR++AI KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL
Sbjct:   124 RKRKIAIRKAQGRNAEAIRELNEYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELIL 183

Query:   121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180
             + P    Y+  +A+V YT GG++N+ L++KY++  + L    + +ALFG+ + S  IA  
Sbjct:   184 TNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNN-HSMRALFGLYMSSVHIASN 242

Query:   181 TKGRNKEDKESPELQSLAAAALEKDYK 207
              K   K  K++ +  + A + ++K Y+
Sbjct:   243 PKASAKMKKDNVKYATWATSQIKKAYQ 269

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|Q15006 EMC2 "ER membrane protein complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 82/201 (40%), Positives = 128/201 (63%)

Query:     7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
             D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct:    70 DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIA 129

Query:    67 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
             I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct:   130 IRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNH 189

Query:   127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
             LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct:   190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLNN-RNMRALFGLYMSASHIASNPKASAK 248

Query:   187 EDKESPELQSLAAAALEKDYK 207
               K++ +  S AA+ + + Y+
Sbjct:   249 TKKDNMKYASWAASQINRAYQ 269

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1S1G1 EMC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 82/201 (40%), Positives = 128/201 (63%)

Query:     7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
             D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct:    70 DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDALQLYDRILQEDPTNTAARKRKIA 129

Query:    67 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
             I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct:   130 IRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNH 189

Query:   127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
             LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct:   190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLNN-RNMRALFGLYMSASHIASNPKASAK 248

Query:   187 EDKESPELQSLAAAALEKDYK 207
               K++ +  S AA+ + + Y+
Sbjct:   249 TKKDNMKYASWAASQINRAYQ 269

GO:0072546 "ER membrane protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q5R882 EMC2 "ER membrane protein complex subunit 2" [Pongo abelii (taxid:9601)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 82/201 (40%), Positives = 128/201 (63%)

Query:     7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
             D+A  C++ L++QFP S RV RL G+  EA   + +A + Y  +L+++P +    KR++A
Sbjct:    70 DLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIA 129

Query:    67 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
             I KAQG    AI  LN+YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   
Sbjct:   130 IRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNH 189

Query:   127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 186
             LY   YA+V YT GG++N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K
Sbjct:   190 LYCQQYAEVKYTQGGLENLELSRKYFAQALKLNN-RNMRALFGLYMSASHIASNPKASAK 248

Query:   187 EDKESPELQSLAAAALEKDYK 207
               K++ +  S AA+ + + Y+
Sbjct:   249 TKKDNMKYASWAASQINRAYQ 269

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031141001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (300 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•					0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 67  IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
           +    G++  A+E+  K LE    + DA+  LA  Y  L  Y++A   YE+ +   P   
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68

Query: 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158
             +       Y LG       A + Y   ++L
Sbjct: 69  KAYYNLGLAYYKLG---KYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 24/90 (26%), Positives = 37/90 (41%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
            G L    G + EA + Y   LE +P +   +    A     G +  A+E   K LE   
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELI 119
            +  A+  L   Y  L  Y++A   YE+ +
Sbjct: 66  DNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 36  AKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD 93
             G    A+K+Y   L  +P  L   L   ++A+A  +  F  A   +++ L     + D
Sbjct: 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALA--ENRFDEARALIDEVLTADPGNVD 194

Query: 94  AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 143
           A     ++ +SL   + A   Y + I  +P      LA A +L   G  +
Sbjct: 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFE 244

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG3060	289	consensus Uncharacterized conserved protein [Funct	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK12370	553	invasion protein regulator; Provisional	99.89
KOG1126	638	consensus DNA-binding cell division cycle control	99.89
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.89
KOG1125	579	consensus TPR repeat-containing protein [General f	99.88
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.88
KOG1126	638	consensus DNA-binding cell division cycle control	99.88
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.87
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.87
PRK12370	553	invasion protein regulator; Provisional	99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.86
PRK11189	296	lipoprotein NlpI; Provisional	99.85
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
PRK15359	144	type III secretion system chaperone protein SscB;	99.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.82
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.82
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.82
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.81
PRK15359	144	type III secretion system chaperone protein SscB;	99.81
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.81
PLN02789	320	farnesyltranstransferase	99.81
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.81
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.8
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.78
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.78
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.76
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.76
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.75
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.74
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.73
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.73
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.72
KOG1125	579	consensus TPR repeat-containing protein [General f	99.72
KOG0553	304	consensus TPR repeat-containing protein [General f	99.71
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.71
PLN02789	320	farnesyltranstransferase	99.7
PRK11189	296	lipoprotein NlpI; Provisional	99.69
PRK14574	822	hmsH outer membrane protein; Provisional	99.68
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.68
KOG1129	478	consensus TPR repeat-containing protein [General f	99.67
KOG1129	478	consensus TPR repeat-containing protein [General f	99.67
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.66
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.66
KOG0553	304	consensus TPR repeat-containing protein [General f	99.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.64
KOG2003	840	consensus TPR repeat-containing protein [General f	99.64
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.64
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.63
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.63
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.63
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.62
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.62
KOG2003	840	consensus TPR repeat-containing protein [General f	99.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.61
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.61
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.61
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.6
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.6
KOG2076	895	consensus RNA polymerase III transcription factor	99.59
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.58
PRK14574	822	hmsH outer membrane protein; Provisional	99.56
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.55
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.55
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.55
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.55
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.54
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.53
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.53
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.52
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.5
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.5
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.48
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.48
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.47
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.46
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.46
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.45
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.44
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.44
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.43
PRK11906	458	transcriptional regulator; Provisional	99.43
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.42
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.41
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.41
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.41
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.4
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.38
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.38
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.37
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.37
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.36
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.35
PRK10803	263	tol-pal system protein YbgF; Provisional	99.35
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.33
PRK15331	165	chaperone protein SicA; Provisional	99.32
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.32
PRK11906	458	transcriptional regulator; Provisional	99.31
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.31
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.3
PLN03218	1060	maturation of RBCL 1; Provisional	99.3
PRK15331	165	chaperone protein SicA; Provisional	99.3
PRK10803	263	tol-pal system protein YbgF; Provisional	99.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.28
PLN03218	1060	maturation of RBCL 1; Provisional	99.28
PF12688	120	TPR_5: Tetratrico peptide repeat	99.27
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.27
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.22
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.22
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.21
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.21
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.19
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.17
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.16
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.15
PF13371	73	TPR_9: Tetratricopeptide repeat	99.15
PF12688	120	TPR_5: Tetratrico peptide repeat	99.14
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.14
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.14
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.13
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.11
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.11
PF13512	142	TPR_18: Tetratricopeptide repeat	99.09
PF13371	73	TPR_9: Tetratricopeptide repeat	99.08
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.07
KOG4234	271	consensus TPR repeat-containing protein [General f	99.07
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.06
KOG4234	271	consensus TPR repeat-containing protein [General f	99.05
PLN03077	857	Protein ECB2; Provisional	99.05
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.05
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.03
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.03
PF13512	142	TPR_18: Tetratricopeptide repeat	99.03
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.02
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.01
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.01
PLN03077	857	Protein ECB2; Provisional	98.98
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.97
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.96
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.96
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.93
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.93
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.92
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.92
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.91
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.89
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.88
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.88
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.85
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.85
KOG4555	175	consensus TPR repeat-containing protein [Function	98.83
KOG4555	175	consensus TPR repeat-containing protein [Function	98.83
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.82
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.8
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.79
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.77
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.75
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.74
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.68
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.67
PRK04841	903	transcriptional regulator MalT; Provisional	98.65
PF13428	44	TPR_14: Tetratricopeptide repeat	98.64
PRK04841	903	transcriptional regulator MalT; Provisional	98.63
PF13428	44	TPR_14: Tetratricopeptide repeat	98.62
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.62
KOG1586	288	consensus Protein required for fusion of vesicles	98.61
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.6
KOG1586	288	consensus Protein required for fusion of vesicles	98.56
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.54
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.54
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.53
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.52
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.52
PF13431	34	TPR_17: Tetratricopeptide repeat	98.5
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.5
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.49
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.49
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.48
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.45
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.42
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.41
KOG2471	696	consensus TPR repeat-containing protein [General f	98.4
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.38
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.36
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.34
PF13431	34	TPR_17: Tetratricopeptide repeat	98.32
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.32
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.3
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.27
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.26
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.22
KOG1585	308	consensus Protein required for fusion of vesicles	98.22
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.21
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.2
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.17
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.15
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.14
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.13
KOG2471	696	consensus TPR repeat-containing protein [General f	98.13
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.12
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.09
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.02
KOG1585	308	consensus Protein required for fusion of vesicles	98.02
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.01
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.94
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.92
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.92
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.9
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.87
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.86
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.86
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.84
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.83
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.82
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.81
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.81
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.71
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.7
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.7
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.66
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.63
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.63
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.61
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.59
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.58
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.54
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.53
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.53
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.53
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.53
PRK10941	269	hypothetical protein; Provisional	97.53
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.48
PRK10941	269	hypothetical protein; Provisional	97.48
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	97.47
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.46
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.45
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.41
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.38
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.35
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.34
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.33
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.31
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.3
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.28
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.27
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.25
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.23
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.21
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.18
KOG1258	577	consensus mRNA processing protein [RNA processing	97.1
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.08
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.05
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.99
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.98
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.98
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.93
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.92
KOG1310	758	consensus WD40 repeat protein [General function pr	96.9
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.79
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.78
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.65
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.59
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.5
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.47
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.43
KOG3364	149	consensus Membrane protein involved in organellar	96.4
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.4
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.38
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.31
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.27
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.27
KOG3364	149	consensus Membrane protein involved in organellar	96.18
COG2912	269	Uncharacterized conserved protein [Function unknow	96.09
KOG1310	758	consensus WD40 repeat protein [General function pr	96.02
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.89
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.88
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.83
KOG2422	665	consensus Uncharacterized conserved protein [Funct	95.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.83
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.81
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.8
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.8
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.78
COG2912	269	Uncharacterized conserved protein [Function unknow	95.76
KOG1258	577	consensus mRNA processing protein [RNA processing	95.72
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.7
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.68
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.67
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.67
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.58
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.57
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.45
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.3
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	95.19
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.17
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.01
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.01
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.99
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.77
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.46
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.41
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.36
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.33
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.24
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.15
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.06
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.99
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.98
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.91
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.84
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	93.79
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.76
COG3947	361	Response regulator containing CheY-like receiver a	93.72
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.71
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.68
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.67
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.58
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.43
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.4
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.38
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.36
COG3947	361	Response regulator containing CheY-like receiver a	93.29
PF12854	34	PPR_1: PPR repeat	93.05
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.01
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.78
PF04090	199	RNA_pol_I_TF: RNA polymerase I specific initiation	92.24
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.19
PF13041	50	PPR_2: PPR repeat family	91.82
PF12854	34	PPR_1: PPR repeat	91.6
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.42
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.29
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.24
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	91.14
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	90.96
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.92
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.82
PHA02537	230	M terminase endonuclease subunit; Provisional	90.77
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.67
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.47
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.38
COG4941	415	Predicted RNA polymerase sigma factor containing a	90.23
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	89.63
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	89.43
KOG1463	411	consensus 26S proteasome regulatory complex, subun	89.3
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	89.19
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.93
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	88.25
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.21
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	88.21
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	87.86
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	87.67
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	87.62
PF13041	50	PPR_2: PPR repeat family	87.28
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	87.16
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	87.06
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.99
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.96
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	86.78
COG1747	711	Uncharacterized N-terminal domain of the transcrip	86.72
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.55
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.04
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.01
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	85.71
KOG3783	546	consensus Uncharacterized conserved protein [Funct	85.68
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.63
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	85.15
COG5159	421	RPN6 26S proteasome regulatory complex component [	85.1
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	84.4
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	84.17
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	83.75
KOG4014	248	consensus Uncharacterized conserved protein (conta	83.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.46
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	83.05
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.0
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	82.77
PHA02537	230	M terminase endonuclease subunit; Provisional	82.76
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.03
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	82.02
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	81.32
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.68
COG4941	415	Predicted RNA polymerase sigma factor containing a	80.59

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.6e-30  Score=184.30  Aligned_cols=224  Identities=51%  Similarity=0.809  Sum_probs=212.3

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      ||.|+.+.|..+++++.+.+|++.++..+.|..+...|.+++|+++|+..++.+|++..++.....+...+|+.-+|++.
T Consensus        63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~  142 (289)
T KOG3060|consen   63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE  142 (289)
T ss_pred             HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      +...++.++.|.++|..++.+|...|+|++|..|+++.+-+.|.++..+..+|.+++-+|...++.-|..+|.++++++|
T Consensus       143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            99999999999999999999999999999999999999999999999999999999999987779999999999999999


Q ss_pred             CCchhHHHhHHHHHHHHHhhhcCCCccccc--hHHHHHHHHHHHHHHHHhhCChhhhHHHHHHhhccC
Q 027158          161 GKNTKALFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT  226 (227)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  226 (227)
                      . +.++++|+.+|...+.+.++...+.+++  ..++..++...+.++| +.++.+...+++-|..+|+
T Consensus       223 ~-~~ral~GI~lc~~~la~~sk~~~k~~K~~a~~~l~~~aas~l~r~~-q~s~~~~d~i~~~l~~lKi  288 (289)
T KOG3060|consen  223 K-NLRALFGIYLCGSALAQISKAELKRKKDVAAPDLISLAASQLERIS-QKSKNKLDLITAALENLKI  288 (289)
T ss_pred             H-hHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhHHHhHHHHHHHHH-HhccchhhHHHHHHHHhcc
Confidence            4 9999999999999999999887777777  7899999999999999 6777888888888887775

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=2.2e-25  Score=177.89  Aligned_cols=211  Identities=18%  Similarity=0.152  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      ++|+.+|.+++...|++..++-.+|-+|..+|..+-|+..|+++++..|..+++++++|..+...|+..+|..+|++++.
T Consensus       269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR  348 (966)
T ss_pred             hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence            33333333333333333333333333334445555555555555555666666666666666666666666666666666


Q ss_pred             HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158           87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus        87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                      +.|+++++..+||.+|.++|.+++|..+|.+++...|....++.+||.+|..+|+   +++|+.+|+.++.+.|. ...+
T Consensus       349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn---l~~Ai~~YkealrI~P~-fAda  424 (966)
T KOG4626|consen  349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN---LDDAIMCYKEALRIKPT-FADA  424 (966)
T ss_pred             hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc---HHHHHHHHHHHHhcCch-HHHH
Confidence            6666666666666666666666666666666666666666666666666666666   77777777777777773 6666


Q ss_pred             HHhHHHHHHHHHhhhcCCCccccc--hHHHHHHHHHHHHHHHHhhCC--hhhhHHHHHH
Q 027158          167 LFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAP--AKLLLLTSAL  221 (227)
Q Consensus       167 ~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~  221 (227)
                      +.+++..+..+++.+.+.....+.  ...-...+-.+|.-+|+..++  ..+..++.-|
T Consensus       425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL  483 (966)
T KOG4626|consen  425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL  483 (966)
T ss_pred             HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence            666666666666544332222111  111122334456666664443  3344444444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=3e-24  Score=171.57  Aligned_cols=173  Identities=23%  Similarity=0.255  Sum_probs=90.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|+..+|..+|++++...|+++.+...+|.++..+|++++|..+|.++++.+|....++.++|.+|..+|++++|+.+|+
T Consensus       333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk  412 (966)
T KOG4626|consen  333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK  412 (966)
T ss_pred             ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence            34444444444444444444444444445555444555555555555555455444455555555555555555555555


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      .++.+.|..++++.++|..|-.+|+...|+.+|.+|+.++|...+++.+||.+|...|+   ..+|+..|+.++++.|+ 
T Consensus       413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn---i~~AI~sY~~aLklkPD-  488 (966)
T KOG4626|consen  413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN---IPEAIQSYRTALKLKPD-  488 (966)
T ss_pred             HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC---cHHHHHHHHHHHccCCC-
Confidence            55555555555555555555555555555555555555555555555555555555555   55555555555555554 


Q ss_pred             chhHHHhHHHHHHHHHh
Q 027158          163 NTKALFGICLCSSAIAQ  179 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~  179 (227)
                      .+.++.++..|..-+.+
T Consensus       489 fpdA~cNllh~lq~vcd  505 (966)
T KOG4626|consen  489 FPDAYCNLLHCLQIVCD  505 (966)
T ss_pred             CchhhhHHHHHHHHHhc
Confidence            55555555555554444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=9e-22  Score=166.61  Aligned_cols=175  Identities=16%  Similarity=0.068  Sum_probs=138.3

Q ss_pred             CChHHHHHHHHHHHHhC---CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQF---PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      ++|++|+..|++++...   |....++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~  387 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED  387 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            46777888888887653   566677778888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      |+++++.+|+++.+|+.+|.+++..|++++|+.+|++++.++|++..++..+|.++..+|+   +++|+..|+++++..|
T Consensus       388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~P  464 (615)
T TIGR00990       388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS---IASSMATFRRCKKNFP  464 (615)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCC
Confidence            8888888888888888888888888888888888888888888888888888888888888   8888888888888877


Q ss_pred             CCchhHHHhHHHHHHHHHhhhc
Q 027158          161 GKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      + ++..+..++.++...+++.+
T Consensus       465 ~-~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       465 E-APDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             C-ChHHHHHHHHHHHHccCHHH
Confidence            4 77777777777777665544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=5e-21  Score=162.10  Aligned_cols=157  Identities=14%  Similarity=0.004  Sum_probs=153.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      .+|++++|+..+++++..+|+....+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|
T Consensus       343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++++++|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+   +++|+..|++++.+.|.
T Consensus       423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK---FDEAIEKFDTAIELEKE  499 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999999999999   99999999999999885

>PRK12370 invasion protein regulator; Provisional

Probab=99.89  E-value=1.8e-21  Score=162.46  Aligned_cols=176  Identities=11%  Similarity=-0.107  Sum_probs=157.8

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF   74 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~   74 (227)
                      +.+++|+..|++++..+|+++.++..+|.++...         +++++|...++++++.+|+++.++..+|.++...|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            3567999999999999999999999999887643         4489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           75 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      ++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.+++..|+   +++|+..+++
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~---~eeA~~~~~~  431 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG---IDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC---HHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998887777878888999   9999999999


Q ss_pred             HhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          155 TIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      ++...|...+..+..++.++..+++...
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~e  459 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHEL  459 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHH
Confidence            9988633477777888888877776554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.5e-22  Score=161.41  Aligned_cols=174  Identities=18%  Similarity=0.112  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      ++.+.|+++|+++++.+|+...++.++|.-+....++|.|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk  514 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK  514 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence            45666667777777777766666666666666666677777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCc
Q 027158           84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN  163 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~  163 (227)
                      |++++|.+....+.+|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++.+++   +++|+..+++.-++.|+ +
T Consensus       515 A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~---~~eal~~LEeLk~~vP~-e  590 (638)
T KOG1126|consen  515 AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR---YVEALQELEELKELVPQ-E  590 (638)
T ss_pred             hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc---hHHHHHHHHHHHHhCcc-h
Confidence            7777777777777777777777777777777777777777777777777777777776   77777777777777764 6


Q ss_pred             hhHHHhHHHHHHHHHhhh
Q 027158          164 TKALFGICLCSSAIAQLT  181 (227)
Q Consensus       164 ~~~~~~l~~~~~~~~~~~  181 (227)
                      ..+++.++.++.++++..
T Consensus       591 s~v~~llgki~k~~~~~~  608 (638)
T KOG1126|consen  591 SSVFALLGKIYKRLGNTD  608 (638)
T ss_pred             HHHHHHHHHHHHHHccch
Confidence            666666666666666533

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.89  E-value=5.4e-21  Score=136.23  Aligned_cols=175  Identities=16%  Similarity=0.130  Sum_probs=160.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      |..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.+|++++|...
T Consensus        46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~  125 (250)
T COG3063          46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ  125 (250)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           81 LNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        81 ~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      |++++..  .|..+..|-++|.|..+.|+++.|..+|++++..+|+.+.....++..++..|+   +..|..++++....
T Consensus       126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~---y~~Ar~~~~~~~~~  202 (250)
T COG3063         126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD---YAPARLYLERYQQR  202 (250)
T ss_pred             HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc---chHHHHHHHHHHhc
Confidence            9999963  455688999999999999999999999999999999999999999999999999   99999999999888


Q ss_pred             cCCCchhHHHhHHHHHHHHHh
Q 027158          159 TGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      .+ .....++-.+.+...+++
T Consensus       203 ~~-~~A~sL~L~iriak~~gd  222 (250)
T COG3063         203 GG-AQAESLLLGIRIAKRLGD  222 (250)
T ss_pred             cc-ccHHHHHHHHHHHHHhcc
Confidence            77 466666666666666665

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=1.6e-21  Score=154.62  Aligned_cols=178  Identities=17%  Similarity=0.146  Sum_probs=166.4

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      |+.|+..+|.-.|+.++..+|.+.++|..+|.+....++-..|+..++++++++|++..++..||..|...|.-.+|..+
T Consensus       296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~  375 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM  375 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             HHHHHHHc-----------------------------------------C--CCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 027158           81 LNKYLETF-----------------------------------------M--ADHDAWRELAEIYVSLQMYKQAAFCYEE  117 (227)
Q Consensus        81 ~~~~l~~~-----------------------------------------p--~~~~~~~~la~~~~~~~~~~~A~~~~~~  117 (227)
                      +.+++...                                         |  .+++....||.+|...|+|++|+.||+.
T Consensus       376 L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~  455 (579)
T KOG1125|consen  376 LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA  455 (579)
T ss_pred             HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence            88876543                                         3  4566788999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          118 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       118 al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      |+...|++...|..||-++....+   ..+|+..|++++++.|+ .+|+.|++++++..++.+.+
T Consensus       456 AL~v~Pnd~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykE  516 (579)
T KOG1125|consen  456 ALQVKPNDYLLWNRLGATLANGNR---SEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKE  516 (579)
T ss_pred             HHhcCCchHHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHH
Confidence            999999999999999999999999   99999999999999996 99999999999999998653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.88  E-value=3.2e-20  Score=138.28  Aligned_cols=174  Identities=15%  Similarity=0.137  Sum_probs=156.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++++...|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus        43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  122 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF  122 (234)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           82 NKYLETF--MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        82 ~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      ++++...  |.....+..+|.++...|++++|..++++++..+|.++.++..+|.++...|+   +++|...++++++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~  199 (234)
T TIGR02521       123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---YKDARAYLERYQQTY  199 (234)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence            9999853  45677899999999999999999999999999999999999999999999999   999999999999987


Q ss_pred             CCCchhHHHhHHHHHHHHHh
Q 027158          160 GGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~  179 (227)
                      |. .+..++..+.++...++
T Consensus       200 ~~-~~~~~~~~~~~~~~~~~  218 (234)
T TIGR02521       200 NQ-TAESLWLGIRIARALGD  218 (234)
T ss_pred             CC-CHHHHHHHHHHHHHHhh
Confidence            74 66666666555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5.9e-22  Score=159.28  Aligned_cols=196  Identities=16%  Similarity=0.110  Sum_probs=164.1

Q ss_pred             HHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH
Q 027158           14 KVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD   93 (227)
Q Consensus        14 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~   93 (227)
                      +.+++.+|+.|..|-.+|+||..+++++.|+++|++++.++|....+|..+|.=+.....+|.|..+|+.++..+|.+..
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence            34455677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHH
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC  173 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  173 (227)
                      +|+.+|.+|.++++++.|.-.|++|+.++|.+......+|.++.++|+   .++|+..|++|+.++|. ++...+..+.+
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~---~d~AL~~~~~A~~ld~k-n~l~~~~~~~i  566 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR---KDKALQLYEKAIHLDPK-NPLCKYHRASI  566 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh---hhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999   99999999999999996 87777777777


Q ss_pred             HHHHHhhhcCCCccccc--hHHHHHHHHHHHHHHHHhhCChh
Q 027158          174 SSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAPAK  213 (227)
Q Consensus       174 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~  213 (227)
                      ...+.+..++....++-  ...-....-.-+.++|++.+..+
T Consensus       567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~  608 (638)
T KOG1126|consen  567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD  608 (638)
T ss_pred             HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence            77766655332222111  00011112234666777666544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.2e-20  Score=143.98  Aligned_cols=152  Identities=21%  Similarity=0.146  Sum_probs=145.8

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      ++-++|+.+|+++++.+|+...+|.++|.-|..+++...|++.|+++++.+|.+..+|+.+|..|-.++...=|+-+|++
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      ++++-|+|+..|..||.||.+.++.++|+.||.+++.....+..++..+|..|..+++   ..+|..+|++.++.
T Consensus       424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQYYEKYVEV  495 (559)
T ss_pred             HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999   99999999999984

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.2e-20  Score=144.91  Aligned_cols=177  Identities=17%  Similarity=0.141  Sum_probs=159.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCC---chhhH----HH---------------------------HHHHHHHcCCHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPE---SKRVG----RL---------------------------EGILLEAKGLWAEAEKAY   47 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~---~~~~~----~~---------------------------~a~~~~~~~~~~~A~~~~   47 (227)
                      ...++++|+..|+.+.+.+|-   +.+.+    +.                           +|+.|...++.++|+.+|
T Consensus       274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF  353 (559)
T KOG1155|consen  274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF  353 (559)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence            356899999999999999982   21111    11                           344556668899999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158           48 SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus        48 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      +++++++|....+|..+|.=|..+.+...|++.|+++++++|.|-.+|+.||+.|..++...=|+.+|++|+...|+++.
T Consensus       354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR  433 (559)
T KOG1155|consen  354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR  433 (559)
T ss_pred             HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          128 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      .|..+|.||.++++   .++|+..|.+++..+. .+..+++.++-.+.++.+..+
T Consensus       434 lw~aLG~CY~kl~~---~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  434 LWVALGECYEKLNR---LEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHH
Confidence            99999999999999   9999999999999987 488899999999999887553

>PRK12370 invasion protein regulator; Provisional

Probab=99.87  E-value=6.9e-20  Score=153.01  Aligned_cols=171  Identities=12%  Similarity=-0.058  Sum_probs=156.2

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      +++++|...+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      +++++|.++..+..++.+++..|++++|+.++++++... |+++.++..+|.++...|+   +++|...+.++....|. 
T Consensus       398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~---~~eA~~~~~~~~~~~~~-  473 (553)
T PRK12370        398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK---HELARKLTKEISTQEIT-  473 (553)
T ss_pred             HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC---HHHHHHHHHHhhhccch-
Confidence            999999998887777878888999999999999999875 7889999999999999999   99999999998888774 


Q ss_pred             chhHHHhHHHHHHHHH
Q 027158          163 NTKALFGICLCSSAIA  178 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~  178 (227)
                      .......++..+...+
T Consensus       474 ~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        474 GLIAVNLLYAEYCQNS  489 (553)
T ss_pred             hHHHHHHHHHHHhccH
Confidence            6666666665555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.86  E-value=2.2e-19  Score=156.53  Aligned_cols=155  Identities=15%  Similarity=-0.003  Sum_probs=98.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|..++++++...|++......++......|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..|+
T Consensus       555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~  633 (987)
T PRK09782        555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR  633 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            455666666666666666555555444444444556666666666666666664 6666666666666666666666666


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|+   +++|+..|++++++.|+
T Consensus       634 ~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        634 AALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---MAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence            66666666666666666666666666666666666666666666666666666666666   66666666666666664

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.85  E-value=1.3e-18  Score=134.63  Aligned_cols=122  Identities=19%  Similarity=0.101  Sum_probs=73.3

Q ss_pred             ChHHHHHHHHHHHHhCC----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      ..+.++..+.+++...|    ..+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34455555555554332    22445566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  126 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  126 (227)
                      |+++++++|++..+|.++|.++...|++++|+..|++++..+|+++
T Consensus       121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            6666666666666666666666666666666666666666666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=8.3e-19  Score=148.93  Aligned_cols=156  Identities=15%  Similarity=0.042  Sum_probs=94.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE----AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      .|++++|+..+++++...|+++.++..+|.++...|++++    |+..|++++..+|+++.++..+|.++...|++++|+
T Consensus       225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~  304 (656)
T PRK15174        225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI  304 (656)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4555666666666666666666666666666666666553    566666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      ..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|+   +++|+..|+++++.
T Consensus       305 ~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~---~deA~~~l~~al~~  381 (656)
T PRK15174        305 PLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK---TSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh
Confidence            666666666666666666666666666666666666666666666555555555555666666   66666666666666


Q ss_pred             cCC
Q 027158          159 TGG  161 (227)
Q Consensus       159 ~~~  161 (227)
                      .|+
T Consensus       382 ~P~  384 (656)
T PRK15174        382 RAS  384 (656)
T ss_pred             Chh
Confidence            554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.84  E-value=1.7e-18  Score=147.09  Aligned_cols=175  Identities=17%  Similarity=0.081  Sum_probs=143.9

Q ss_pred             CCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH----H
Q 027158            3 CQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT----A   77 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~----A   77 (227)
                      .|++++|+..+++++..+| ........++.++...|++++|+..+++++..+|+++.++..+|.++...|++++    |
T Consensus       190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A  269 (656)
T PRK15174        190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQA  269 (656)
T ss_pred             cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence            5777777777777777765 3334445567788888999999999999999999999999999999999999885    7


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      +..|++++..+|+++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+   +++|+..|++++.
T Consensus       270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~---~~eA~~~l~~al~  346 (656)
T PRK15174        270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ---YTAASDEFVQLAR  346 (656)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999   9999999999999


Q ss_pred             hcCCCchhHHHhHHHHHHHHHhhh
Q 027158          158 LTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      .+|+ ........+.++...++..
T Consensus       347 ~~P~-~~~~~~~~a~al~~~G~~d  369 (656)
T PRK15174        347 EKGV-TSKWNRYAAAALLQAGKTS  369 (656)
T ss_pred             hCcc-chHHHHHHHHHHHHCCCHH
Confidence            8885 5545555555565555433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=4.9e-19  Score=159.05  Aligned_cols=177  Identities=15%  Similarity=0.086  Sum_probs=149.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV--------------LHKRRVAI   67 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~l~~~   67 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..              ....+|.+
T Consensus       281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999887642              12345778


Q ss_pred             HHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH------------
Q 027158           68 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV------------  135 (227)
Q Consensus        68 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~------------  135 (227)
                      +...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|.+..++..++.+            
T Consensus       361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~  440 (1157)
T PRK11447        361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF  440 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999887766555544            


Q ss_pred             ------------------------------HHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          136 ------------------------------LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       136 ------------------------------~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                                                    +...|+   +++|+..|+++++++|+ ++..++.++.++...++...
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~---~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK---WAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence                                          334577   89999999999999995 88888888888887666544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.84  E-value=2.9e-19  Score=123.62  Aligned_cols=126  Identities=14%  Similarity=0.042  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158           10 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM   89 (227)
Q Consensus        10 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p   89 (227)
                      ...+++++..+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35667777777664   445677777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158           90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus        90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      .++.+++++|.++...|++++|+..|++++...|+++.++..++.+...
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777666666544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.83  E-value=1.3e-18  Score=151.74  Aligned_cols=175  Identities=13%  Similarity=0.033  Sum_probs=161.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..++++....|. ...+..+|.++...|++++|..+++++++.+|.+...+..++......|++++|+..|
T Consensus       521 ~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~  599 (987)
T PRK09782        521 QVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL  599 (987)
T ss_pred             HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            478999999999998776554 4557888999999999999999999999999999888887777777889999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++++.+|+ +.++..+|.++...|++++|+.+|++++..+|+++.++.++|.++...|+   +++|+..|+++++..|+
T Consensus       600 ~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~---~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        600 TRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD---IAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC
Confidence            999999996 99999999999999999999999999999999999999999999999999   99999999999999996


Q ss_pred             CchhHHHhHHHHHHHHHhhhc
Q 027158          162 KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~~~~  182 (227)
                       ++.+++.++.++..+++...
T Consensus       676 -~~~a~~nLA~al~~lGd~~e  695 (987)
T PRK09782        676 -DPALIRQLAYVNQRLDDMAA  695 (987)
T ss_pred             -CHHHHHHHHHHHHHCCCHHH
Confidence             99999999999998887553

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.82  E-value=7e-18  Score=135.69  Aligned_cols=177  Identities=16%  Similarity=0.048  Sum_probs=142.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTA   77 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A   77 (227)
                      ..|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+..    ..++..+|.++...|++++|
T Consensus        47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A  126 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA  126 (389)
T ss_pred             hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            35788889999999999999888888889999999999999999888888754322    25677888888888888889


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCCCcHHHHHHHH
Q 027158           78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-----LYHLAYADVLYTLGGVDNILLAKKYY  152 (227)
Q Consensus        78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~~~~A~~~~  152 (227)
                      +..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+.     ..+..+|.++...|+   +++|+..|
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~  203 (389)
T PRK11788        127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD---LDAARALL  203 (389)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence            8888888888888888888888888888888888888888888777653     245677888888888   88888888


Q ss_pred             HHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          153 ASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      +++++..|+ ....++.++.++...++..+
T Consensus       204 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~  232 (389)
T PRK11788        204 KKALAADPQ-CVRASILLGDLALAQGDYAA  232 (389)
T ss_pred             HHHHhHCcC-CHHHHHHHHHHHHHCCCHHH
Confidence            888888885 66677777777777665444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.82  E-value=2.4e-18  Score=122.84  Aligned_cols=148  Identities=16%  Similarity=0.077  Sum_probs=135.5

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  104 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  104 (227)
                      .+...+|.-|+..|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+.+.+.|..++.
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~  115 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          105 LQMYKQAAFCYEELILS--QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       105 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      +|+|++|...|++|+..  .|..+.++.++|.|..+.|+   ++.|..+|+++++.+|+ .+.....++.....
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~  185 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ---FDQAEEYLKRALELDPQ-FPPALLELARLHYK  185 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC---chhHHHHHHHHHHhCcC-CChHHHHHHHHHHh
Confidence            99999999999999964  35667899999999999999   99999999999999996 66565555544443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.82  E-value=4e-18  Score=149.53  Aligned_cols=175  Identities=22%  Similarity=0.202  Sum_probs=119.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|..+++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..+
T Consensus       681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~  759 (899)
T TIGR02917       681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTL  759 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHH
Confidence            35667777777777777777777777777777777777777777777777776665 45556677777777777777777


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++++..+|+++.++..+|.++...|++++|+.+|++++...|+++.++..+|.++...|+    .+|+.++++++...|+
T Consensus       760 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKLAPN  835 (899)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCCC
Confidence            777777777777777777777777777777777777777777777777777776666665    3377777777776664


Q ss_pred             CchhHHHhHHHHHHHHHhhhc
Q 027158          162 KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~~~~  182 (227)
                       ++..+..++.++...+++.+
T Consensus       836 -~~~~~~~~~~~~~~~g~~~~  855 (899)
T TIGR02917       836 -IPAILDTLGWLLVEKGEADR  855 (899)
T ss_pred             -CcHHHHHHHHHHHHcCCHHH
Confidence             55566666666655555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.81  E-value=4.7e-18  Score=149.11  Aligned_cols=174  Identities=16%  Similarity=0.116  Sum_probs=105.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|...|++++...|+++.++..++.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..++
T Consensus       478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  557 (899)
T TIGR02917       478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE  557 (899)
T ss_pred             CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35555555555555555555555555555555555555555555555555555555555555555555555555665555


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      +++..+|.+...+..++.++...|++++|+..+++++...|.++.++..+|.++...|+   +++|+..|+++++..|. 
T Consensus       558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~-  633 (899)
T TIGR02917       558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD---LNKAVSSFKKLLALQPD-  633 (899)
T ss_pred             HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-
Confidence            55555555555555666666666666666666666666666666666666666666666   66666666666666664 


Q ss_pred             chhHHHhHHHHHHHHHhh
Q 027158          163 NTKALFGICLCSSAIAQL  180 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~~  180 (227)
                      ++..+..++.++...++.
T Consensus       634 ~~~~~~~l~~~~~~~~~~  651 (899)
T TIGR02917       634 SALALLLLADAYAVMKNY  651 (899)
T ss_pred             ChHHHHHHHHHHHHcCCH
Confidence            555566666665554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.81  E-value=2.2e-18  Score=119.21  Aligned_cols=127  Identities=15%  Similarity=0.094  Sum_probs=116.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           44 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        44 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      ..+++++++.+|++   +..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46789999999985   557899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          124 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       124 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      +++.+++++|.++...|+   +++|+..|.+++...|+ ++..+...+.+...+
T Consensus        90 ~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYA-DASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHH
Confidence            999999999999999999   99999999999999996 777665555554433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.81  E-value=6.5e-18  Score=151.86  Aligned_cols=177  Identities=15%  Similarity=0.072  Sum_probs=156.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.+++.++..+...+++++|+..+
T Consensus       473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l  552 (1157)
T PRK11447        473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL  552 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999998888887777777777776665


Q ss_pred             HHH----------------------------------------HHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           82 NKY----------------------------------------LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        82 ~~~----------------------------------------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                      +++                                        ++..|.++..+..+|.++...|++++|+.+|++++..
T Consensus       553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~  632 (1157)
T PRK11447        553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR  632 (1157)
T ss_pred             HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            542                                        2347888899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          122 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       122 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      +|+++.++..++.++...|+   +++|+..|+++++..|+ ++..+..++.++...++..+
T Consensus       633 ~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~e  689 (1157)
T PRK11447        633 EPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAA  689 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999   99999999999999885 77788888888877665443

>PLN02789 farnesyltranstransferase

Probab=99.81  E-value=1.4e-17  Score=129.02  Aligned_cols=173  Identities=16%  Similarity=0.030  Sum_probs=155.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh--HHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF--PTAIE   79 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~--~~A~~   79 (227)
                      .+++++|+..+.+++..+|++..+|..++.++...| ++++++..+.+++..+|.+..+|..++.++...|+.  ++++.
T Consensus        50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence            468899999999999999999999999999999998 689999999999999999999999999999988874  78899


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHH
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI----LLAKKYYAST  155 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~----~~A~~~~~~~  155 (227)
                      ++.++++.+|.+..+|...+.++...|+|++++.++.++++.+|.+..+|..++.++...|..+.+    ++++.+..++
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a  209 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA  209 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998877321113    5788888999


Q ss_pred             hhhcCCCchhHHHhHHHHHHH
Q 027158          156 IDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      +..+|+ +..+|..+.-++..
T Consensus       210 I~~~P~-N~SaW~Yl~~ll~~  229 (320)
T PLN02789        210 ILANPR-NESPWRYLRGLFKD  229 (320)
T ss_pred             HHhCCC-CcCHHHHHHHHHhc
Confidence            999996 77777766666554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.81  E-value=8.1e-18  Score=126.31  Aligned_cols=158  Identities=15%  Similarity=0.108  Sum_probs=87.7

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH---HH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AW   95 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~   95 (227)
                      ..+..++.+|..+...|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++.+|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            4455555556666666666666666666665555543   34555566666666666666666666666555543   45


Q ss_pred             HHHHHHHHHc--------ccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCCCcHHHHHH
Q 027158           96 RELAEIYVSL--------QMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNILLAKK  150 (227)
Q Consensus        96 ~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~~~~A~~  150 (227)
                      +.+|.++...        |++++|+..|++++..+|++..++                 ..+|.+++..|+   +.+|+.
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~  187 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA---YVAAIN  187 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHHH
Confidence            5555555544        555566666666665555553321                 244555555566   666666


Q ss_pred             HHHHHhhhcCC--CchhHHHhHHHHHHHHHhhhc
Q 027158          151 YYASTIDLTGG--KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       151 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      .|+++++..|+  ....+++.++.++..+++..+
T Consensus       188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~  221 (235)
T TIGR03302       188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDL  221 (235)
T ss_pred             HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence            66666655443  124555555555555555443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=9.4e-18  Score=131.23  Aligned_cols=174  Identities=13%  Similarity=0.082  Sum_probs=90.6

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      .+..+-...|+.+.+.+|.++.+++.+|.+++-.+++++|+.-|+++++++|++..++..++....+++++++++..|+.
T Consensus       374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee  453 (606)
T KOG0547|consen  374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEE  453 (606)
T ss_pred             hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHh
Q 027158           84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYT-LGGVDNILLAKKYYASTI  156 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~-~g~~~~~~~A~~~~~~~~  156 (227)
                      +.+.+|+.++.+...|.++..+++|++|++.|.+++.+.|.      ++..+...|.+..+ .++   +..|+..+++++
T Consensus       454 ~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d---~~~a~~Ll~KA~  530 (606)
T KOG0547|consen  454 AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED---INQAENLLRKAI  530 (606)
T ss_pred             HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh---HHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555554      33333222222222 123   555555555555


Q ss_pred             hhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          157 DLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      +++|. .-.++.+|+....+.++..
T Consensus       531 e~Dpk-ce~A~~tlaq~~lQ~~~i~  554 (606)
T KOG0547|consen  531 ELDPK-CEQAYETLAQFELQRGKID  554 (606)
T ss_pred             ccCch-HHHHHHHHHHHHHHHhhHH
Confidence            55553 4445555555555444433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.80  E-value=1.5e-18  Score=133.65  Aligned_cols=179  Identities=19%  Similarity=0.092  Sum_probs=117.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIE   79 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~   79 (227)
                      ..+++++|..++.+.....+ ++..+.....++...++++++...+.++....  |.++.+|..+|.++...|+.++|+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            45788899998888877664 45666677778888999999999998877654  6778889999999999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .|+++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++..+|+   +++|+.+|+++++.+
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~---~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR---YEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc---ccccccccccccccc
Confidence            99999999999999999999999999999998888888888888888888999999999999   999999999999999


Q ss_pred             CCCchhHHHhHHHHHHHHHhhhcCCC
Q 027158          160 GGKNTKALFGICLCSSAIAQLTKGRN  185 (227)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~  185 (227)
                      |+ ++..+..++.+....++...+..
T Consensus       245 p~-d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  245 PD-DPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             TT--HHHHHHHHHHHT----------
T ss_pred             cc-ccccccccccccccccccccccc
Confidence            95 88888899999888888665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=3.6e-17  Score=121.77  Aligned_cols=156  Identities=21%  Similarity=0.205  Sum_probs=144.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIE   79 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~   79 (227)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...  |.....+..+|.++...|++++|..
T Consensus        77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  156 (234)
T TIGR02521        77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK  156 (234)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence            46899999999999999999999999999999999999999999999999853  5567788999999999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .+.+++..+|.++.++..+|.++...|++++|+.++++++...|.++..+..++.++...|+   .+.|....+.+....
T Consensus       157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999   999999888776654


Q ss_pred             C
Q 027158          160 G  160 (227)
Q Consensus       160 ~  160 (227)
                      |
T Consensus       234 ~  234 (234)
T TIGR02521       234 P  234 (234)
T ss_pred             c
Confidence            3

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.79  E-value=2.8e-17  Score=132.19  Aligned_cols=155  Identities=13%  Similarity=0.054  Sum_probs=76.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      .|++++|+..+++++...+..    ..++..+|.++...|++++|...|.++++.+|.+..++..++.++...|++++|+
T Consensus        82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~  161 (389)
T PRK11788         82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAI  161 (389)
T ss_pred             cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHH
Confidence            345555555555554432111    1334445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHcCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158           79 EWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  153 (227)
Q Consensus        79 ~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  153 (227)
                      ..++++++..|.+.     ..+..+|.++...|++++|+.+|++++..+|++..++..+|.++...|+   +++|+..|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~  238 (389)
T PRK11788        162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD---YAAAIEALE  238 (389)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC---HHHHHHHHH
Confidence            55555555444331     1334445555555555555555555555555555555555555555555   555555555


Q ss_pred             HHhhhcC
Q 027158          154 STIDLTG  160 (227)
Q Consensus       154 ~~~~~~~  160 (227)
                      +++..+|
T Consensus       239 ~~~~~~p  245 (389)
T PRK11788        239 RVEEQDP  245 (389)
T ss_pred             HHHHHCh
Confidence            5555444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.78  E-value=4.8e-18  Score=130.77  Aligned_cols=150  Identities=27%  Similarity=0.322  Sum_probs=65.6

Q ss_pred             CChHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ++++++...++++....  |.++.++..+|.++...|++++|+..|+++++.+|+++.+...++.++...|+.+++...+
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l  203 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL  203 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            44455555555544322  3444455555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      .......|.++..|..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+   .++|..++++++
T Consensus       204 ~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~A~~~~~~~~  275 (280)
T PF13429_consen  204 KRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred             HHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc---cccccccccccc
Confidence            555554455555555555555555555555555555555555555555555555555555   555555555444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.3e-17  Score=130.40  Aligned_cols=156  Identities=15%  Similarity=0.053  Sum_probs=152.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++-.|...|+.++..+|.....++.+|..|....+..+-...|+.+..++|+++++|+.+|.+++-.+++++|+..|+
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~  418 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ  418 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++.++|++.-++..++.+.+++++++++...|+.+.+..|+.+.++...|.++..+++   |+.|.+.|.+++++.|.
T Consensus       419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq---Fd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ---FDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh---HHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999   99999999999999995

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.78  E-value=6.5e-17  Score=117.58  Aligned_cols=122  Identities=10%  Similarity=0.032  Sum_probs=116.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHccc--HHHHHH
Q 027158           37 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY-VSLQM--YKQAAF  113 (227)
Q Consensus        37 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~--~~~A~~  113 (227)
                      .++.++++..++++++.+|++...|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567789999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          114 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       114 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .++++++.+|+++.++..+|..++..|+   +++|+.+|++++++.|.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999999   99999999999999986

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.78  E-value=4.9e-17  Score=118.22  Aligned_cols=125  Identities=16%  Similarity=0.061  Sum_probs=117.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--hHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA-KAQGN--FPTAIE   79 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~   79 (227)
                      .++.++++..+++.+..+|++...|..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ...|+  .++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            466788999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      .++++++.+|+++.++..+|..++..|++++|+.+++++++..|.+..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999886543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.77  E-value=2.3e-16  Score=133.17  Aligned_cols=157  Identities=16%  Similarity=0.140  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      .+++.-+......+|.++.+++++|.+..+.|.+++|..+++.+++..|++..++..++.++.+.+++++|...+++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            34555566666778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158           87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus        87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                      .+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+   .++|...|+++++...+ -.+.
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~-~~~~  224 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGD-GARK  224 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCc-chHH
Confidence            9999999999999999999999999999999999999999999999999999999   99999999999999775 3344


Q ss_pred             H
Q 027158          167 L  167 (227)
Q Consensus       167 ~  167 (227)
                      +
T Consensus       225 ~  225 (694)
T PRK15179        225 L  225 (694)
T ss_pred             H
Confidence            3

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.2e-16  Score=125.54  Aligned_cols=153  Identities=20%  Similarity=0.242  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL   85 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l   85 (227)
                      -+.|+..|..+.+..|........+|.-|.+.++++.|..+|.+++.+.|.++.++..+|.+.+..+.+.+|..+|+.++
T Consensus       362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence            34555555555555555555555555566666677777777777777788888888888888888888888888888877


Q ss_pred             HHcCC-------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           86 ETFMA-------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        86 ~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      ..-+.       ....+.+||.++.+.+.+++|+.+|++++...|.++.++..+|.+|..+|+   ++.|+.+|.+++-+
T Consensus       442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALAL  518 (611)
T ss_pred             HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhc
Confidence            43221       245688999999999999999999999999999999999999999999999   99999999999999


Q ss_pred             cCC
Q 027158          159 TGG  161 (227)
Q Consensus       159 ~~~  161 (227)
                      .|+
T Consensus       519 ~p~  521 (611)
T KOG1173|consen  519 KPD  521 (611)
T ss_pred             CCc
Confidence            996

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.76  E-value=1.7e-16  Score=119.15  Aligned_cols=156  Identities=18%  Similarity=0.083  Sum_probs=140.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc----
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQ----   71 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~----   71 (227)
                      ..|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++.+|+++.   +++.+|.++...    
T Consensus        45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~  124 (235)
T TIGR03302        45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV  124 (235)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence            46899999999999999999876   57899999999999999999999999999998875   688999999876    


Q ss_pred             ----CChHHHHHHHHHHHHHcCCCHHHH-----------------HHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HH
Q 027158           72 ----GNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAAFCYEELILSQPTV---PL  127 (227)
Q Consensus        72 ----~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~  127 (227)
                          |++++|+..|++++..+|++..++                 ..+|.+++..|++.+|+..+++++...|++   +.
T Consensus       125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (235)
T TIGR03302       125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEE  204 (235)
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHH
Confidence                789999999999999999986543                 367888999999999999999999997765   57


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          128 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      +++.+|.++...|+   +++|..+++......|
T Consensus       205 a~~~l~~~~~~lg~---~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       205 ALARLVEAYLKLGL---KDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence            99999999999999   9999999888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.75  E-value=2.6e-16  Score=107.96  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=95.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           45 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        45 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      +.+++++..+|++..+...+|.++...|++++|+..+++++..+|.++.+|..+|.++...|++++|+.++++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          125 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       125 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++..++.+|.++...|+   +++|+..|+++++++|+
T Consensus        84 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        84 DPRPYFHAAECLLALGE---PESALKALDLAIEICGE  117 (135)
T ss_pred             ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence            88888888888888888   88888888888888885

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.74  E-value=2.3e-16  Score=108.27  Aligned_cols=119  Identities=18%  Similarity=0.054  Sum_probs=114.0

Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158           11 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA   90 (227)
Q Consensus        11 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~   90 (227)
                      ..+++++...|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           91 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      ++..++.+|.++...|++++|+..|+++++.+|++....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            999999999999999999999999999999999887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.5e-16  Score=125.20  Aligned_cols=177  Identities=14%  Similarity=0.025  Sum_probs=155.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|..+|-++...+|....+|...|..+...|+.++|+..|..|-+.-|..-.....+|.-|...++++.|..+|.
T Consensus       325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~  404 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK  404 (611)
T ss_pred             hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence            47788888888888888888888888888888888888888888888888888777777778888888899999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC----CC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----PT---VPLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      +++.+.|.+|-....+|.+.+..+.|.+|..+|+.++..-    +.   -...+.++|.++.+++.   +.+|+..|+++
T Consensus       405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~a  481 (611)
T KOG1173|consen  405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKA  481 (611)
T ss_pred             HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHH
Confidence            9999999999999999999999999999999999998432    22   23568999999999999   99999999999


Q ss_pred             hhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          156 IDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      +.+.|. ++..+.+++.++..+++..++
T Consensus       482 L~l~~k-~~~~~asig~iy~llgnld~A  508 (611)
T KOG1173|consen  482 LLLSPK-DASTHASIGYIYHLLGNLDKA  508 (611)
T ss_pred             HHcCCC-chhHHHHHHHHHHHhcChHHH
Confidence            999996 999999999999999987764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.73  E-value=2.9e-15  Score=129.78  Aligned_cols=176  Identities=12%  Similarity=-0.040  Sum_probs=154.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPT   76 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~   76 (227)
                      ..|++++|+..|++++...|..| .+...+|.++...|++++|+..|++++..+|.+    ......++..+...|++++
T Consensus       249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e  328 (765)
T PRK10049        249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG  328 (765)
T ss_pred             HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence            35789999999999998865433 244456999999999999999999999988876    3567778888899999999


Q ss_pred             HHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           77 AIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        77 A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      |+..++++....|..               ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus       329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~  408 (765)
T PRK10049        329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW  408 (765)
T ss_pred             HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            999999999987731               35778899999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          142 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                         +++|+..+++++.+.|+ +...++..+.+....+++.
T Consensus       409 ---~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~  444 (765)
T PRK10049        409 ---PRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWR  444 (765)
T ss_pred             ---HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHH
Confidence               99999999999999996 8889999998888877644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.72  E-value=9.7e-16  Score=132.67  Aligned_cols=153  Identities=10%  Similarity=0.018  Sum_probs=146.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|+.++|+..+.++....|....++..+|.++...|++++|+..|++++..+|.++.++..++.++...|++++|+..++
T Consensus        28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~  107 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK  107 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            58999999999999988898998999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ++++.+|+++. +..+|.++...|++++|+..+++++...|+++.++..++.++...|.   .+.|+..++++.. .|
T Consensus       108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~---~e~Al~~l~~~~~-~p  180 (765)
T PRK10049        108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL---SAPALGAIDDANL-TP  180 (765)
T ss_pred             HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHhCCC-CH
Confidence            99999999999 99999999999999999999999999999999999999999999999   9999999987776 54

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.72  E-value=1.6e-16  Score=126.59  Aligned_cols=155  Identities=15%  Similarity=0.162  Sum_probs=142.7

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-----------------------------   54 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----------------------------   54 (227)
                      ++-..|+..++++++++|++..++..+|..|...|.-.+|..++.+-+...                             
T Consensus       333 E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~  412 (579)
T KOG1125|consen  333 ENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAH  412 (579)
T ss_pred             cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHH
Confidence            445678999999999999999999999999999988888888877775543                             


Q ss_pred             ------------C--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           55 ------------P--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        55 ------------p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                                  |  .++++...||.+|...|+|++|+.+|+.++...|++...|..||-.+..-.+..+|+..|++|++
T Consensus       413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence                        2  34778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       121 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +.|....+++++|.++..+|.   |++|..+|-.++.+.+.
T Consensus       493 LqP~yVR~RyNlgIS~mNlG~---ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  493 LQPGYVRVRYNLGISCMNLGA---YKEAVKHLLEALSMQRK  530 (579)
T ss_pred             cCCCeeeeehhhhhhhhhhhh---HHHHHHHHHHHHHhhhc
Confidence            999999999999999999999   99999999999998764

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.71  E-value=2.8e-16  Score=116.50  Aligned_cols=115  Identities=21%  Similarity=0.213  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      +-.-|.-+...++|.+|+..|.++|.++|+++..|.+++.+|.++|.++.|++.++.++.++|....+|..||.+|..+|
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            34456677777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158          107 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus       107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ++.+|+..|++++.++|++..++.+|..+-..+++
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            88888888888888888888888888777777776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.71  E-value=1.4e-15  Score=110.79  Aligned_cols=172  Identities=16%  Similarity=0.125  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      ..+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|...+..|++.+|+..++++..
T Consensus        50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~  128 (257)
T COG5010          50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR  128 (257)
T ss_pred             hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence            34555566666788999989 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158           87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus        87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                      ..|++..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..++-.|+   ++.|..++..+....+. +.+.
T Consensus       129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~a-d~~v  204 (257)
T COG5010         129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAA-DSRV  204 (257)
T ss_pred             cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCC-chHH
Confidence            9999999999999999999999999999999999999999999999999999999   99999999999988774 8889


Q ss_pred             HHhHHHHHHHHHhhhcC
Q 027158          167 LFGICLCSSAIAQLTKG  183 (227)
Q Consensus       167 ~~~l~~~~~~~~~~~~~  183 (227)
                      ..+++++....+++..+
T Consensus       205 ~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         205 RQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHHHHHHhhcCChHHH
Confidence            99999999888875543

>PLN02789 farnesyltranstransferase

Probab=99.70  E-value=4e-15  Score=115.40  Aligned_cols=171  Identities=11%  Similarity=0.041  Sum_probs=150.2

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW--AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .+++++..+++++..+|++..+|..++.++...|+.  ++++.++.++++.+|.+..+|..++.++...|++++++.++.
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~  166 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH  166 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            578999999999999999999999999999988874  788999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHc---ccH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHH
Q 027158           83 KYLETFMADHDAWRELAEIYVSL---QMY----KQAAFCYEELILSQPTVPLYHLAYADVLYTLGG-VDNILLAKKYYAS  154 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~~~~A~~~~~~  154 (227)
                      ++++.+|.+..+|...+.+....   |.+    +.++.+..+++..+|++..+|..++.++...+. .....+|...+.+
T Consensus       167 ~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~  246 (320)
T PLN02789        167 QLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE  246 (320)
T ss_pred             HHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence            99999999999999999998776   333    578999999999999999999999999988332 0116779999999


Q ss_pred             HhhhcCCCchhHHHhHHHHHHH
Q 027158          155 TIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      +++.+|. ...++.-++-++..
T Consensus       247 ~~~~~~~-s~~al~~l~d~~~~  267 (320)
T PLN02789        247 VLSKDSN-HVFALSDLLDLLCE  267 (320)
T ss_pred             hhcccCC-cHHHHHHHHHHHHh
Confidence            9998885 67677677766664

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.69  E-value=3.6e-15  Score=115.43  Aligned_cols=125  Identities=15%  Similarity=0.047  Sum_probs=115.8

Q ss_pred             HcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHH
Q 027158           36 AKGLWAEAEKAYSSLLEDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  111 (227)
Q Consensus        36 ~~~~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A  111 (227)
                      ..+..+.++..+.+++...|    ..+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            34667889999999997443    33678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch
Q 027158          112 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  164 (227)
Q Consensus       112 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~  164 (227)
                      +..|+++++++|++..++.++|.+++..|+   +++|+..|+++++.+|+ ++
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~-~~  166 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPN-DP  166 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CH
Confidence            999999999999999999999999999999   99999999999999996 54

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.68  E-value=9.3e-15  Score=125.65  Aligned_cols=173  Identities=10%  Similarity=-0.070  Sum_probs=146.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|+++.|+..|++++..+|.++.....+..++...|+.++|+.++++++...|........+|.++...|++++|++.|
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely  125 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW  125 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            47999999999999999999986444477788888899999999999999444555566666688999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++   ..+|+..|+++++..|+
T Consensus       126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P~  201 (822)
T PRK14574        126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAPT  201 (822)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999986655 555555555666   77799999999999996


Q ss_pred             CchhHHHhHHHHHHHHHh
Q 027158          162 KNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~  179 (227)
                       +...+..+..+....+-
T Consensus       202 -n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        202 -SEEVLKNHLEILQRNRI  218 (822)
T ss_pred             -CHHHHHHHHHHHHHcCC
Confidence             88787777766666443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.68  E-value=7.2e-15  Score=107.11  Aligned_cols=151  Identities=15%  Similarity=0.020  Sum_probs=140.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|+-+.+.....++...+|.+..++...|....+.|++..|+..++++....|+++.+|..+|.+|.+.|++++|...|.
T Consensus        79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~  158 (257)
T COG5010          79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR  158 (257)
T ss_pred             cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence            35666777788888888899998888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      +++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+.-..|+   +++|...-.+-+
T Consensus       159 qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~---~~~A~~i~~~e~  229 (257)
T COG5010         159 QALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD---FREAEDIAVQEL  229 (257)
T ss_pred             HHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC---hHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999   999987665443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=5.1e-16  Score=116.40  Aligned_cols=170  Identities=13%  Similarity=0.055  Sum_probs=99.7

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY   84 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   84 (227)
                      +...|+..+.+.++.+|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|+-.++++-|+.+|++.
T Consensus       271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi  350 (478)
T KOG1129|consen  271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI  350 (478)
T ss_pred             cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence            34455555555555556555555555666666666666666666666666666555555555555566666666666666


Q ss_pred             HHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           85 LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP---TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        85 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++.-.+++.++++|.|++.-++++-++..|++|+....   .-..+|+++|.+..-.|+   +.-|...|+-++..+|+
T Consensus       351 LqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD---~nlA~rcfrlaL~~d~~  427 (478)
T KOG1129|consen  351 LQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD---FNLAKRCFRLALTSDAQ  427 (478)
T ss_pred             HHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc---hHHHHHHHHHHhccCcc
Confidence            666666666666666666666666666666666664432   123456666666666666   66666666666666553


Q ss_pred             CchhHHHhHHHHHHHHH
Q 027158          162 KNTKALFGICLCSSAIA  178 (227)
Q Consensus       162 ~~~~~~~~l~~~~~~~~  178 (227)
                       +..++.++++...+-+
T Consensus       428 -h~ealnNLavL~~r~G  443 (478)
T KOG1129|consen  428 -HGEALNNLAVLAARSG  443 (478)
T ss_pred             -hHHHHHhHHHHHhhcC
Confidence             5555555555544433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=3.7e-16  Score=117.16  Aligned_cols=164  Identities=14%  Similarity=0.070  Sum_probs=152.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      ++++++|.++|+.+++..|.+.++...+|..|+-.++.+-|+.+|++.+.+.-.++..+.++|.|++..++++-++..|+
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           83 KYLETFMA---DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        83 ~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      +++....+   -++.|+++|.+....|++.-|-.+|+-++..+|++..++.++|..-.+.|+   ..+|..++..+-...
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~---i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD---ILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc---hHHHHHHHHHhhhhC
Confidence            99987542   378999999999999999999999999999999999999999999999999   999999999999999


Q ss_pred             CCCchhHHHhH
Q 027158          160 GGKNTKALFGI  170 (227)
Q Consensus       160 ~~~~~~~~~~l  170 (227)
                      |+ -....+++
T Consensus       460 P~-m~E~~~Nl  469 (478)
T KOG1129|consen  460 PD-MAEVTTNL  469 (478)
T ss_pred             cc-ccccccce
Confidence            96 44444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.66  E-value=9.4e-15  Score=122.59  Aligned_cols=176  Identities=14%  Similarity=0.058  Sum_probs=129.8

Q ss_pred             CCChHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAI   78 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---~~~~A~   78 (227)
                      .|+|..|+.+|..++..+|. -+.+.+.+|.|++..|+.+.|+..|.+++.++|++..++..||.+-....   .+..+.
T Consensus       177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~  256 (1018)
T KOG2002|consen  177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGV  256 (1018)
T ss_pred             cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHH
Confidence            56788888888888888874 45666777888888888888888888888888888888777777666544   366777


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      ..+.++...+|.+|.+...|+..++..|+|..+..+...++......   ...++.+|.+|+.+|+   |++|..+|.++
T Consensus       257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd---~ekA~~yY~~s  333 (1018)
T KOG2002|consen  257 QLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD---FEKAFKYYMES  333 (1018)
T ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHH
Confidence            77788888888888777777777777777777777777777554333   2347777888888887   88888888888


Q ss_pred             hhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          156 IDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      ++.+|++..-.++|++..+...++..
T Consensus       334 ~k~~~d~~~l~~~GlgQm~i~~~dle  359 (1018)
T KOG2002|consen  334 LKADNDNFVLPLVGLGQMYIKRGDLE  359 (1018)
T ss_pred             HccCCCCccccccchhHHHHHhchHH
Confidence            87777644666777777666655533

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.66  E-value=5.2e-15  Score=101.09  Aligned_cols=107  Identities=16%  Similarity=0.143  Sum_probs=99.5

Q ss_pred             HhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           51 LEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        51 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      .... +++-+..+.+|..+...|++++|...|+-+..++|.++..|++||.++...|+|++|+.+|..++.++|++|.++
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            3446 677788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          130 LAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      .+.|.|+...|+   .+.|...|+.++....
T Consensus       107 ~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        107 WAAAECYLACDN---VCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHHhc
Confidence            999999999999   9999999999999873

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=2.6e-15  Score=111.45  Aligned_cols=119  Identities=13%  Similarity=0.076  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      .-+..-|.-+...++|.+|+..|.++|+++|.++..|++.|.+|.+.|+++.|++-++.++.++|.+..+|.++|.+|..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34566778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          139 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       139 ~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      +|+   +.+|++.|+++++++|+ +...+.++..+...+.+..
T Consensus       162 ~gk---~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  162 LGK---YEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             cCc---HHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCC
Confidence            999   99999999999999996 8878888888888877744

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.1e-14  Score=112.15  Aligned_cols=156  Identities=17%  Similarity=0.076  Sum_probs=144.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------------VLHKRRVAIAKA   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~~~   70 (227)
                      .|++++|....-.+++.++.+..+++..|.++.-.++.+.|+.+|++++.++|+..            ..+...|+-.++
T Consensus       182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk  261 (486)
T KOG0550|consen  182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK  261 (486)
T ss_pred             cccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence            57899999999999999999999999999999999999999999999999999763            446778888999


Q ss_pred             cCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 027158           71 QGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  146 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  146 (227)
                      .|++..|.++|..+|.++|++    +..|.+.+.+..+.|+.++|+.-++.++.++|....++...|.|+..+++   |+
T Consensus       262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~---~e  338 (486)
T KOG0550|consen  262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK---WE  338 (486)
T ss_pred             ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH---HH
Confidence            999999999999999999987    45788999999999999999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHhhhcCC
Q 027158          147 LAKKYYASTIDLTGG  161 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~  161 (227)
                      +|++.|+++++...+
T Consensus       339 ~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  339 EAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999999998764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.65  E-value=3.4e-14  Score=114.46  Aligned_cols=170  Identities=12%  Similarity=0.054  Sum_probs=112.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------------
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------------------------   53 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------------------------   53 (227)
                      +.|+++.|...++++.+..|+++.++..++.++...|+|++|+..+.+..+.                            
T Consensus       165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~  244 (398)
T PRK10747        165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG  244 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3566677777777777777777777777777777777777666444443321                            


Q ss_pred             --------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           54 --------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        54 --------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                                    .|+++.+...++..+...|+.++|...++++++ .|.++......+.+  ..+++++++..+++.+
T Consensus       245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~l  321 (398)
T PRK10747        245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQI  321 (398)
T ss_pred             HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHH
Confidence                          223444555556666666777777777777666 33444443333333  3377777777777777


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       120 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +.+|+++..+..+|.++...|+   +++|..+|+++++..|+ . ..+..++.++...++
T Consensus       322 k~~P~~~~l~l~lgrl~~~~~~---~~~A~~~le~al~~~P~-~-~~~~~La~~~~~~g~  376 (398)
T PRK10747        322 KQHGDTPLLWSTLGQLLMKHGE---WQEASLAFRAALKQRPD-A-YDYAWLADALDRLHK  376 (398)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC-H-HHHHHHHHHHHHcCC
Confidence            7788888888888888888888   88888888888888884 3 334456666666554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.64  E-value=8.4e-14  Score=112.92  Aligned_cols=172  Identities=16%  Similarity=0.120  Sum_probs=155.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      +++.++|+.+++..++.+|+.+..|.++|.++.++++.+.|...|...++..|..+..|..++.+--..|....|...+.
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild  743 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD  743 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH------------------------------HHHHH
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------------------------------YHLAY  132 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------------------~~~~l  132 (227)
                      ++.-.+|.++..|......-.+.|..+.|.....+|++-.|.+..                              ++..+
T Consensus       744 rarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai  823 (913)
T KOG0495|consen  744 RARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI  823 (913)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence            999999999999999999999999999999999999988776543                              67778


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158          133 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      |..++...+   +++|.+.|.++++.+|+ +..+|..+.....+.+
T Consensus       824 a~lfw~e~k---~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG  865 (913)
T KOG0495|consen  824 AKLFWSEKK---IEKAREWFERAVKKDPD-NGDAWAWFYKFELRHG  865 (913)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhC
Confidence            888888888   99999999999999997 5555544444444444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=113.51  Aligned_cols=170  Identities=19%  Similarity=0.097  Sum_probs=85.5

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      |++++|.+.|+.++..+.....+++.+|..+..+|+.++|+.+|-+.-.+--++..++..++.+|....+..+|++++-+
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            45555555555555555445555555555555555555555555444444444444444555555544455555555555


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHc----------------------------------ccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           84 YLETFMADHDAWRELAEIYVSL----------------------------------QMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~----------------------------------~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      +..+-|++|..+..||.+|-+.                                  .=+++|+.+|+++--+.|+...+.
T Consensus       584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq  663 (840)
T KOG2003|consen  584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ  663 (840)
T ss_pred             hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence            4444444444444444444444                                  444455555555555555555555


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          130 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      ..++.|+.+.|+   |++|...|+......|. +...+.-+......+
T Consensus       664 lmiasc~rrsgn---yqka~d~yk~~hrkfpe-dldclkflvri~~dl  707 (840)
T KOG2003|consen  664 LMIASCFRRSGN---YQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDL  707 (840)
T ss_pred             HHHHHHHHhccc---HHHHHHHHHHHHHhCcc-chHHHHHHHHHhccc
Confidence            555555555555   55555555555555553 444444444444333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=6.8e-14  Score=104.81  Aligned_cols=175  Identities=14%  Similarity=0.071  Sum_probs=133.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHH-------
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAIAKA-------   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~-------   70 (227)
                      ..+.++|+..|-.+++.+|...+++..+|+.+...|+.+.|+.+-+..++ .|+.     ..+...+|.-|+.       
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            35678999999999999999999999999999999999999988777665 3332     1233444444444       


Q ss_pred             ---------------------------cCChHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158           71 ---------------------------QGNFPTAIEWLNKYLETFMAD-----HDAWRELAEIYVSLQMYKQAAFCYEEL  118 (227)
Q Consensus        71 ---------------------------~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a  118 (227)
                                                 ..+|++|+..-++...+.|..     +..++.|+..+....+.+.|...+.+|
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence                                       445555555555555555544     456778888888888888888888888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          119 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       119 l~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      ++.+|++..+-..+|.+....|+   +..|++.++.+++.+|+.-..+.-.+..||.++++..
T Consensus       207 lqa~~~cvRAsi~lG~v~~~~g~---y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         207 LQADKKCVRASIILGRVELAKGD---YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             HhhCccceehhhhhhHHHHhccc---hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            88888888888888999988888   9999999999998888755566667778888877643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=1.4e-13  Score=114.89  Aligned_cols=153  Identities=19%  Similarity=0.121  Sum_probs=128.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|..++..++.++|.++.+++.+|.+|.+.|+.+++...+-.+-.++|.+.+.|..++.....+|++++|+-+|.
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            47888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-----LYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ++++.+|.+-...+..+.+|.+.|+...|...|.+++...|...     ......+..+...++   -+.|+..+..++.
T Consensus       232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s  308 (895)
T KOG2076|consen  232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALS  308 (895)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888888888321     234445667777777   7888888888887


Q ss_pred             h
Q 027158          158 L  158 (227)
Q Consensus       158 ~  158 (227)
                      .
T Consensus       309 ~  309 (895)
T KOG2076|consen  309 K  309 (895)
T ss_pred             h
Confidence            4

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.63  E-value=2.4e-14  Score=97.90  Aligned_cols=110  Identities=15%  Similarity=-0.010  Sum_probs=102.1

Q ss_pred             HHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHH
Q 027158           16 LQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA   94 (227)
Q Consensus        16 ~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   94 (227)
                      +.... ++.....+.+|..+...|++++|...|+-+...+|.+...|++||.++...|++.+|+..|.+++.++|+++.+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            33445 66777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           95 WRELAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      +.++|.+++..|+.+.|...|+.++.....+
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999876433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=5.8e-14  Score=108.36  Aligned_cols=172  Identities=18%  Similarity=0.099  Sum_probs=143.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH-
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW-   80 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~-   80 (227)
                      +.+++..|+.+.++.++.+|++..++++.|..+.+.|+..+|+-.|+.+..+.|...++|..+..+|...|++.+|... 
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A  391 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA  391 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999999998876555444 


Q ss_pred             -----------------------------------HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           81 -----------------------------------LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        81 -----------------------------------~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                                                         +++++.+.|....+...+|.++...|.+..++.++++.+...|+ 
T Consensus       392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-  470 (564)
T KOG1174|consen  392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-  470 (564)
T ss_pred             HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-
Confidence                                               44455555666666777788888888888888888888877765 


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158          126 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       126 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      ...+..+|+++...+.   +++|..+|..++.++|. +.+...|+-..-....
T Consensus       471 ~~LH~~Lgd~~~A~Ne---~Q~am~~y~~ALr~dP~-~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  471 VNLHNHLGDIMRAQNE---PQKAMEYYYKALRQDPK-SKRTLRGLRLLEKSDD  519 (564)
T ss_pred             cHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHhccC
Confidence            4567888888888888   99999999999999995 8888888766555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.63  E-value=2.7e-14  Score=113.05  Aligned_cols=113  Identities=17%  Similarity=0.092  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      +...|..++..|++++|+.+|.+++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            34567777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 027158          107 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  139 (227)
Q Consensus       107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  139 (227)
                      +|++|+..|++++.++|+++.+...++.+...+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            888888888888888888888877777775554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.62  E-value=1e-13  Score=116.51  Aligned_cols=173  Identities=9%  Similarity=0.023  Sum_probs=145.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      ++|+.+.|+..|.++++++|.+..++..+|.+-....   .+..+...+.++...+|.+|.++..++..++-.|++..+.
T Consensus       211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~  290 (1018)
T KOG2002|consen  211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW  290 (1018)
T ss_pred             hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence            4577788999999999999988888888887776654   4678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           79 EWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        79 ~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      .+..-++...-..   ++.++.+|.+|..+|+|++|..+|.++++.+|++ ...++.+|..+...|+   ++.|...|++
T Consensus       291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d---le~s~~~fEk  367 (1018)
T KOG2002|consen  291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD---LEESKFCFEK  367 (1018)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch---HHHHHHHHHH
Confidence            9988888765333   4568899999999999999999999999998888 6778889999999999   9999999999


Q ss_pred             HhhhcCCCchhHHHhHHHHHHHHH
Q 027158          155 TIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      +++..|+ +...+.-++..+....
T Consensus       368 v~k~~p~-~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  368 VLKQLPN-NYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHHhCcc-hHHHHHHHHhHHHhhh
Confidence            9999996 7777777777776653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.62  E-value=8.1e-14  Score=113.09  Aligned_cols=174  Identities=17%  Similarity=0.167  Sum_probs=143.0

Q ss_pred             CCChHHHHHHHHHHHHh--------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRRVA   66 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~   66 (227)
                      .|+|++|+..+..+++.        .|.-......+|.+|...+++++|+..|++++..        +|.-+.++.+|+.
T Consensus       212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~  291 (508)
T KOG1840|consen  212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV  291 (508)
T ss_pred             hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            58999999999999998        3443444556899999999999999999999986        4445678999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-----CCC---HHHHH
Q 027158           67 IAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-----PTV---PLYHL  130 (227)
Q Consensus        67 ~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~  130 (227)
                      .|...|++++|..++++++++...        -+..+.+++.++...+++++|..++++++++.     +++   +....
T Consensus       292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~  371 (508)
T KOG1840|consen  292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA  371 (508)
T ss_pred             HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence            999999999999999999987432        25578899999999999999999999999653     233   45799


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-------CchhHHHhHHHHHHHHHh
Q 027158          131 AYADVLYTLGGVDNILLAKKYYASTIDLTGG-------KNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       131 ~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~  179 (227)
                      ++|.+|+.+|+   +.+|.+.|++++.+...       .....++.++..+.+.+.
T Consensus       372 nl~~l~~~~gk---~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  372 NLAELYLKMGK---YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             HHHHHHHHhcc---hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence            99999999999   99999999999988532       123455666666666554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=7.8e-14  Score=109.14  Aligned_cols=151  Identities=18%  Similarity=0.087  Sum_probs=119.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---------
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN---------   73 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~---------   73 (227)
                      +|+.++|+.+|-++-...-++..+++.++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+         
T Consensus       537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y  616 (840)
T KOG2003|consen  537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY  616 (840)
T ss_pred             hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence            46777777777777776667777777777777777777777777777777777777777777776666554         


Q ss_pred             -------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           74 -------------------------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        74 -------------------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                                               +++|+.+|+++--+.|+.......++.|+.+.|+|..|.+.|+..-+..|.+...
T Consensus       617 dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc  696 (840)
T KOG2003|consen  617 DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC  696 (840)
T ss_pred             hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence                                     6778888888888888888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      +..+..+.-.+|    ..++.++-.+.-+
T Consensus       697 lkflvri~~dlg----l~d~key~~klek  721 (840)
T KOG2003|consen  697 LKFLVRIAGDLG----LKDAKEYADKLEK  721 (840)
T ss_pred             HHHHHHHhcccc----chhHHHHHHHHHH
Confidence            888888888877    4556555544433

>TIGR00540 hemY_coli hemY protein

Probab=99.62  E-value=1.3e-13  Score=111.59  Aligned_cols=173  Identities=13%  Similarity=0.068  Sum_probs=105.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------------
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------------------------   53 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------------------------   53 (227)
                      +.|+++.|...++.+.+..|+++.++..++.++...|+|++|...+.+..+.                            
T Consensus       165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3567777777777777777777777777777777777777666655555432                            


Q ss_pred             ----------CC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHcccHHHHHHHHHH
Q 027158           54 ----------NP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW--RELAEIYVSLQMYKQAAFCYEE  117 (227)
Q Consensus        54 ----------~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~  117 (227)
                                .|    +++.++..++..+...|++++|...++++++.+|++....  ..........++.+.++..+++
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~  324 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK  324 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence                      12    2344455555666666666666666666666666665421  2222222334566666666666


Q ss_pred             HHhhCCCCH--HHHHHHHHHHHHcCCCCcHHHHHHHHH--HHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          118 LILSQPTVP--LYHLAYADVLYTLGGVDNILLAKKYYA--STIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       118 al~~~p~~~--~~~~~la~~~~~~g~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +++..|+++  ..+..+|.+++..|+   +++|.++|+  .+++..|+ .. ....++.++..+++
T Consensus       325 ~lk~~p~~~~~~ll~sLg~l~~~~~~---~~~A~~~le~a~a~~~~p~-~~-~~~~La~ll~~~g~  385 (409)
T TIGR00540       325 QAKNVDDKPKCCINRALGQLLMKHGE---FIEAADAFKNVAACKEQLD-AN-DLAMAADAFDQAGD  385 (409)
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHccc---HHHHHHHHHHhHHhhcCCC-HH-HHHHHHHHHHHcCC
Confidence            666667666  666667777777777   777777777  45556663 22 23355555555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.61  E-value=7.7e-14  Score=111.00  Aligned_cols=154  Identities=16%  Similarity=0.040  Sum_probs=125.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      .|++++|...+++++..+|++..++.. +..+...|    ....+...+......+|....++..+|.++...|++++|+
T Consensus        56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  134 (355)
T cd05804          56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE  134 (355)
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            578888999999999888888766654 44444444    4444444444444567777778888899999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      ..++++++..|+++.++..+|.++...|++++|+.++++++...|.++    ..+..+|.++...|+   +++|+..|++
T Consensus       135 ~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~---~~~A~~~~~~  211 (355)
T cd05804         135 EAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD---YEAALAIYDT  211 (355)
T ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999877443    346689999999999   9999999999


Q ss_pred             HhhhcC
Q 027158          155 TIDLTG  160 (227)
Q Consensus       155 ~~~~~~  160 (227)
                      ++...|
T Consensus       212 ~~~~~~  217 (355)
T cd05804         212 HIAPSA  217 (355)
T ss_pred             Hhcccc
Confidence            987666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=7.6e-14  Score=101.24  Aligned_cols=139  Identities=18%  Similarity=0.099  Sum_probs=128.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      +|++++|+++|+.++..+|.+..++...-.+...+|+..+|++.+...++..+.|.++|..++.+|...|++.+|.-+++
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE  178 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE  178 (289)
T ss_pred             hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            58899999999999999999998888888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      +.+-+.|.++..+..+|.+++-+|   ++.-|..+|.++++++|.+..+++.+-.+....-+
T Consensus       179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999886   57889999999999999888888877666555444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.61  E-value=1.6e-13  Score=103.78  Aligned_cols=172  Identities=13%  Similarity=0.021  Sum_probs=149.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|+..-|+.++..+++..|.+...+.+.+.||...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+
T Consensus       168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR  247 (504)
T KOG0624|consen  168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR  247 (504)
T ss_pred             CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHH--------------------------------------------------HHHHHHHHcccHHHHH
Q 027158           83 KYLETFMADHDAWR--------------------------------------------------ELAEIYVSLQMYKQAA  112 (227)
Q Consensus        83 ~~l~~~p~~~~~~~--------------------------------------------------~la~~~~~~~~~~~A~  112 (227)
                      .+++++|++...+-                                                  .+..|+...|++-+|+
T Consensus       248 ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi  327 (504)
T KOG0624|consen  248 ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI  327 (504)
T ss_pred             HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence            99999988743221                                                  3345555668889999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158          113 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       113 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      ..+.+++..+|++..++...|.+|..-..   |+.|+..|+++.+.+++ +.++.-|+-.+..-..
T Consensus       328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~---YD~AI~dye~A~e~n~s-n~~~reGle~Akrlkk  389 (504)
T KOG0624|consen  328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEM---YDDAIHDYEKALELNES-NTRAREGLERAKRLKK  389 (504)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888   99999999999999995 8777777766554443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.60  E-value=4.2e-13  Score=113.63  Aligned_cols=138  Identities=10%  Similarity=-0.026  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           41 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        41 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      .+++.-.......+|.++.++..+|.+..+.|++++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            33444444455568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       121 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      .+|++..+++.+|.++..+|+   +++|+..|++++..+|+ ...++.+++.+....++...
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~---~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~  206 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQ---SEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWR  206 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999   99999999999998885 89999999999998887554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.60  E-value=4.4e-13  Score=101.48  Aligned_cols=176  Identities=16%  Similarity=0.024  Sum_probs=149.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++..|+..|-.+++.+|++..+++..|.+|...|+-..|+.-+.+++++.|+...+....|.+++.+|.+++|+..|+
T Consensus        51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~  130 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFD  130 (504)
T ss_pred             hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCH---HHHH------------HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 027158           83 KYLETFMADH---DAWR------------ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  147 (227)
Q Consensus        83 ~~l~~~p~~~---~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  147 (227)
                      .+++-+|++.   ++..            .....++..|+...|+.+....+++.|=+...+...+.||...|+   ...
T Consensus       131 ~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e---~k~  207 (504)
T KOG0624|consen  131 QVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE---PKK  207 (504)
T ss_pred             HHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc---HHH
Confidence            9999888652   2222            223345556889999999999999999888888889999999999   999


Q ss_pred             HHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          148 AKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       148 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      |+..++.+-++..+ +...+|-+......+++...
T Consensus       208 AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~  241 (504)
T KOG0624|consen  208 AIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAEN  241 (504)
T ss_pred             HHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHH
Confidence            99999999998885 77788888877777776443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.60  E-value=8.7e-14  Score=110.17  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      +...|...+..|++++|+..|.++++.+|+++.+|..+|.++...|++++|+..+++++.++|.++.+++.+|.+++.+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158          141 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  180 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (227)
                      +   +++|+..|+++++++|+ +..+...+..|...+...
T Consensus        85 ~---~~eA~~~~~~al~l~P~-~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         85 E---YQTAKAALEKGASLAPG-DSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             C---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhh
Confidence            9   99999999999999996 888888899998888653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.59  E-value=2.5e-13  Score=113.40  Aligned_cols=134  Identities=20%  Similarity=0.253  Sum_probs=128.5

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  104 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  104 (227)
                      ..+...|+..+..|++++|..++.++++.+|.++.+|..+|.+|...|+.+++..++-.+-.++|.+.+.|..++.....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            34556678888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          105 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       105 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +|.+++|..||.+|++.+|.+....+..+.+|.++|+   ...|...|.+++.+.|.
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~---~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGD---LKRAMETFLQLLQLDPP  273 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh---HHHHHHHHHHHHhhCCc
Confidence            9999999999999999999999999999999999999   99999999999999994

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=1.8e-13  Score=102.54  Aligned_cols=157  Identities=16%  Similarity=0.079  Sum_probs=143.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCChHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAIAKAQGNFPT   76 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~   76 (227)
                      ..|-+|.|+.+|..+.+...--..++..+..+|....+|++|++..++..+..+..     +..+..++..+....+.+.
T Consensus       119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~  198 (389)
T COG2956         119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR  198 (389)
T ss_pred             HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence            45789999999999988766677888999999999999999999999999998765     3567888998888999999


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           77 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        77 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      |+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|.. +.+...+..+|..+|+   ..+....+.++
T Consensus       199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~---~~~~~~fL~~~  275 (389)
T COG2956         199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK---PAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987 5688899999999999   99999999999


Q ss_pred             hhhcCC
Q 027158          156 IDLTGG  161 (227)
Q Consensus       156 ~~~~~~  161 (227)
                      .+..++
T Consensus       276 ~~~~~g  281 (389)
T COG2956         276 METNTG  281 (389)
T ss_pred             HHccCC
Confidence            998886

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=4.8e-13  Score=106.21  Aligned_cols=121  Identities=20%  Similarity=0.213  Sum_probs=106.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 027158           53 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  132 (227)
Q Consensus        53 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  132 (227)
                      .+|.-..-....|..++..|+|..|+..|.+++..+|+++.+|.+.|.||...|.+..|+..++.+++++|+....+.+-
T Consensus       353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK  432 (539)
T KOG0548|consen  353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK  432 (539)
T ss_pred             hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            34444445556688899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          133 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      |.++..+.+   |++|.+.|.++++.+|. +..+.-++..|...+
T Consensus       433 g~al~~mk~---ydkAleay~eale~dp~-~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  433 GAALRAMKE---YDKALEAYQEALELDPS-NAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHh
Confidence            999999999   99999999999999995 888888888888865

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.58  E-value=2.3e-13  Score=110.47  Aligned_cols=172  Identities=13%  Similarity=0.043  Sum_probs=149.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|+...|..++.++.+.+|++..+|+....+.+...+++.|..++.++....| ...+|...+.....+++.++|+.+++
T Consensus       597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllE  675 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLE  675 (913)
T ss_pred             cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHH
Confidence            36777888888888888888888888888888888888888888888887655 35778888888888999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      ++++.+|+....|..+|+++..+++.+.|...|...++..|+.+..|..++.+-...|+   ...|...+.++.-.+|+ 
T Consensus       676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk-  751 (913)
T KOG0495|consen  676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPK-  751 (913)
T ss_pred             HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCC-
Confidence            99999999999999999999999999999999999999999999999999999999999   99999999999999996 


Q ss_pred             chhHHHhHHHHHHHHHh
Q 027158          163 NTKALFGICLCSSAIAQ  179 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~  179 (227)
                      +...|...+..-.+.+.
T Consensus       752 ~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  752 NALLWLESIRMELRAGN  768 (913)
T ss_pred             cchhHHHHHHHHHHcCC
Confidence            77777777766666554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.56  E-value=1.7e-12  Score=111.87  Aligned_cols=147  Identities=14%  Similarity=0.011  Sum_probs=130.1

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158           12 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD   91 (227)
Q Consensus        12 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~   91 (227)
                      ++-...-..|..+...+..+.+..+.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|..
T Consensus        22 ~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~  101 (822)
T PRK14574         22 LFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS  101 (822)
T ss_pred             HHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC
Confidence            33334456789999999999999999999999999999999999996554488999999999999999999999444445


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           92 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        92 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ......+|.++...|+|++|+..|+++++.+|+++.++..++.++...|+   .++|+..++++...+|.
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcc
Confidence            55566668899999999999999999999999999999999999999999   99999999999999995

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.55  E-value=6.9e-13  Score=105.51  Aligned_cols=175  Identities=15%  Similarity=-0.004  Sum_probs=140.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----hH
Q 027158            3 CQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----FP   75 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~----~~   75 (227)
                      .|+.+.+...+.++....|.+   .......+.++...|++++|...+++++..+|++..++.. +..+...|+    ..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~   97 (355)
T cd05804          19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRD   97 (355)
T ss_pred             cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCch
Confidence            466777788888888877744   4567788999999999999999999999999999987765 555555544    44


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      .+...+......+|........+|.++...|++++|+..+++++...|+++.++..+|.+++..|+   +++|+..+.++
T Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~---~~eA~~~l~~~  174 (355)
T cd05804          98 HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR---FKEGIAFMESW  174 (355)
T ss_pred             hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHhh
Confidence            444444443355677777888999999999999999999999999999999999999999999999   99999999999


Q ss_pred             hhhcCC---CchhHHHhHHHHHHHHHhhh
Q 027158          156 IDLTGG---KNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       156 ~~~~~~---~~~~~~~~l~~~~~~~~~~~  181 (227)
                      +...|.   .....++.++.++...++..
T Consensus       175 l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         175 RDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             hhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            998763   11234556777777766544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.55  E-value=5.4e-13  Score=105.02  Aligned_cols=137  Identities=19%  Similarity=0.074  Sum_probs=124.3

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      |....+++-.+..++..|+++.|...++..+...|+++..+...+.+++..++.++|.+.+++++..+|+.+..+.++|+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            67778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      .++..|++.+|+..++..+..+|+++..|..||..|..+|+   ..+|...+.+...+.-
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~---~~~a~~A~AE~~~~~G  439 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN---RAEALLARAEGYALAG  439 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc---hHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999   7888877777777665

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.55  E-value=1.3e-12  Score=105.79  Aligned_cols=155  Identities=16%  Similarity=0.166  Sum_probs=149.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ++++|...+...++++..+|++++.+.+.|..+...|+.++|......++..++.+...|..+|.++....+|++|+.+|
T Consensus        19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      +.|+.+.|+|...|..++.+..++++++.....-.+.++..|.....|..+|.+++..|+   +..|....+...+..
T Consensus        99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen   99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999   999998888777665

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2.6e-13  Score=107.71  Aligned_cols=146  Identities=20%  Similarity=0.159  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL   85 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l   85 (227)
                      .++++...+...-.+|.-..--...|..++..|+|..|+.+|.+++..+|+++..|.+++.||...|.+..|+...+.++
T Consensus       340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i  419 (539)
T KOG0548|consen  340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI  419 (539)
T ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44455555555555666666667779999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           86 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        86 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      +++|+...+|..-|.++..+.+|++|++.|+++++.+|++..+.-.+..|...+..   .....+.+++
T Consensus       420 eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~---~~~~ee~~~r  485 (539)
T KOG0548|consen  420 ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG---DETPEETKRR  485 (539)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc---CCCHHHHHHh
Confidence            99999999999999999999999999999999999999999998888888886544   3334444444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=4.1e-13  Score=103.63  Aligned_cols=156  Identities=18%  Similarity=0.115  Sum_probs=143.5

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH---------
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---------   93 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------   93 (227)
                      ...+..+.+.|+...|++++|...-...+++++.+.++++..|.++...++.+.|+..|++++.++|++..         
T Consensus       168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k  247 (486)
T KOG0550|consen  168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK  247 (486)
T ss_pred             hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence            34667788999999999999999999999999999999999999999999999999999999999998743         


Q ss_pred             ---HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158           94 ---AWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus        94 ---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                         .|..-|+-.++.|.|..|.++|..+|.++|++.    ..+.++|.+...+|+   .++|+...+.++.++|. .+.+
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s-yika  323 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR---LREAISDCNEALKIDSS-YIKA  323 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH-HHHH
Confidence               577889999999999999999999999999764    468899999999999   99999999999999995 9999


Q ss_pred             HHhHHHHHHHHHhhhc
Q 027158          167 LFGICLCSSAIAQLTK  182 (227)
Q Consensus       167 ~~~l~~~~~~~~~~~~  182 (227)
                      +..-+.|+..+.++..
T Consensus       324 ll~ra~c~l~le~~e~  339 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEE  339 (486)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988664

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.53  E-value=9.2e-13  Score=112.87  Aligned_cols=168  Identities=11%  Similarity=0.001  Sum_probs=141.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------------------HHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-------------------VLHK   62 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-------------------~~~~   62 (227)
                      +.+++++|+.+++..+..+|+...+++.+|.++.+.+++.++...  .++...+.+.                   .+++
T Consensus        43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~  120 (906)
T PRK14720         43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR  120 (906)
T ss_pred             hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence            568999999999999999999999999999999998887776655  5555544444                   8999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------------------C
Q 027158           63 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------------------Q  122 (227)
Q Consensus        63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------~  122 (227)
                      .+|.||-..|+.++|...++++++.+|+++.+..++|..|... +.++|+.++.+|+..                    +
T Consensus       121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~  199 (906)
T PRK14720        121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYN  199 (906)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999 999999999999854                    2


Q ss_pred             CCCHHH--------------------HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          123 PTVPLY--------------------HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       123 p~~~~~--------------------~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      |.+...                    +.-+-.+|...++   |++++..++.+++.+|. +..+..+++.|+..
T Consensus       200 ~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~  269 (906)
T PRK14720        200 SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNK-NNKAREELIRFYKE  269 (906)
T ss_pred             cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCc-chhhHHHHHHHHHH
Confidence            333221                    1222255666667   99999999999999996 88999999999984

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.53  E-value=5.3e-13  Score=108.39  Aligned_cols=177  Identities=19%  Similarity=0.143  Sum_probs=146.0

Q ss_pred             CCCChHHHHHHHHHHHHhC-----CC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQF-----PE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRV   65 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~   65 (227)
                      +.+++++|+.+|++++...     ++   ...++..+|..|...|++++|..++++++++.        |.-...+..++
T Consensus       253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~  332 (508)
T KOG1840|consen  253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA  332 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence            5689999999999999852     33   44668889999999999999999999999872        23346678889


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--------CCCHHHH
Q 027158           66 AIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--------PTVPLYH  129 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~  129 (227)
                      .++...+++++|+.++++++++.        |.-+..+.++|.+|..+|+|++|.++|++++...        +.....+
T Consensus       333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l  412 (508)
T KOG1840|consen  333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL  412 (508)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence            99999999999999999999863        2336689999999999999999999999999764        2335678


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhhhc----CC--CchhHHHhHHHHHHHHHhhh
Q 027158          130 LAYADVLYTLGGVDNILLAKKYYASTIDLT----GG--KNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~~~~~  181 (227)
                      .++|..+..+++   +.+|...|.++..+.    |+  +-...+.+++-.|..++++.
T Consensus       413 ~~la~~~~~~k~---~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e  467 (508)
T KOG1840|consen  413 NQLAEAYEELKK---YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE  467 (508)
T ss_pred             HHHHHHHHHhcc---cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence            999999999999   888888888887663    22  24567779999999999854

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.53  E-value=2.2e-12  Score=104.04  Aligned_cols=173  Identities=10%  Similarity=-0.027  Sum_probs=93.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      .|+++.|...+.++.+..|+.. ......+.++...|+++.|...++++.+..|+++.++..++.++...|++++|+..+
T Consensus       131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l  210 (398)
T PRK10747        131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDIL  210 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4556666666666665555543 222233556666666666666666666666666666666666666666666665444


Q ss_pred             HHHHH------------------------------------------HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           82 NKYLE------------------------------------------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        82 ~~~l~------------------------------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      .+..+                                          ..|+++.++..++..+...|+.++|...+++++
T Consensus       211 ~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l  290 (398)
T PRK10747        211 PSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL  290 (398)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            33321                                          122344455555555556666666666666665


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       120 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      +. |.++.....++.+  ..++   .++++...++.++..|+ ++..+..++..+...+++.+
T Consensus       291 ~~-~~~~~l~~l~~~l--~~~~---~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~  346 (398)
T PRK10747        291 KR-QYDERLVLLIPRL--KTNN---PEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQE  346 (398)
T ss_pred             hc-CCCHHHHHHHhhc--cCCC---hHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence            53 3333332223322  2244   66666666666666664 55555555555555555443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.52  E-value=2.6e-12  Score=101.27  Aligned_cols=137  Identities=23%  Similarity=0.204  Sum_probs=92.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..++.++...|+++..+...+.++...++..+|.+.+++++..+|+.+..+..+|.++...|++.+|+..++
T Consensus       319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~  398 (484)
T COG4783         319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN  398 (484)
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence            45666666666666666677666666667777777777777777777777777666666677777777777777777777


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      ..+..+|+++..|..||..|..+|+-.+|..                 ..|..++..|+   ++.|+..+..+.+..
T Consensus       399 ~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~---~~~A~~~l~~A~~~~  455 (484)
T COG4783         399 RYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGR---LEQAIIFLMRASQQV  455 (484)
T ss_pred             HHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCC---HHHHHHHHHHHHHhc
Confidence            7777777777777777777666666665532                 34556666666   666666666666654

>TIGR00540 hemY_coli hemY protein

Probab=99.51  E-value=2.5e-11  Score=98.33  Aligned_cols=157  Identities=16%  Similarity=0.063  Sum_probs=124.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      ..|+++.|.+.+.+..+..|+....+...|.+....|+++.|..++.++.+..|++. .+....+.++...|+++.|...
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~  175 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG  175 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            357888888888888887777777777778888888888888888888888888775 4555568888888888888888


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------------------------------------C
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------------------------------------Q  122 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------------------------~  122 (227)
                      ++.+++..|+++.++..++.++...|+|++|...+.+..+.                                      .
T Consensus       176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~  255 (409)
T TIGR00540       176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ  255 (409)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence            88888888888888888888888888888777766655533                                      2


Q ss_pred             C----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          123 P----TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       123 p----~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      |    +++..+..+|..+...|+   +++|...++++++..|+
T Consensus       256 p~~~~~~~~l~~~~a~~l~~~g~---~~~A~~~l~~~l~~~pd  295 (409)
T TIGR00540       256 PRHRRHNIALKIALAEHLIDCDD---HDSAQEIIFDGLKKLGD  295 (409)
T ss_pred             CHHHhCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCC
Confidence            3    355567777777888888   99999999999998886

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.50  E-value=1.9e-12  Score=86.57  Aligned_cols=102  Identities=20%  Similarity=0.197  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELA   99 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la   99 (227)
                      .++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   +.++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            44555555555555555555555555555544   3455555555555555555555555555555543   34555555


Q ss_pred             HHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158          100 EIYVSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      .++...|++++|+.++++++...|+++.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            5555555555555555555555555543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.50  E-value=1.3e-11  Score=92.56  Aligned_cols=154  Identities=12%  Similarity=0.078  Sum_probs=87.1

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH---KRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWR   96 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~   96 (227)
                      ++..++..|......|++++|+..|++++..+|..+.+.   ..+|.++...+++++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            344455566666666666666666666666666554332   556666666666666666666666666655   33555


Q ss_pred             HHHHHHHHcc------------------cHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCC
Q 027158           97 ELAEIYVSLQ------------------MYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGG  141 (227)
Q Consensus        97 ~la~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~  141 (227)
                      .+|.++...+                  ...+|+..|++.+...|++..                 --+.+|..|++.|.
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~  190 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA  190 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            5555543322                  123455666666666665532                 12455666666666


Q ss_pred             CCcHHHHHHHHHHHhhhcCC--CchhHHHhHHHHHHHHHh
Q 027158          142 VDNILLAKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       142 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~  179 (227)
                         +..|+.-++.+++.-|+  ....+++-+..++..++.
T Consensus       191 ---y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~  227 (243)
T PRK10866        191 ---YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL  227 (243)
T ss_pred             ---hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence               66666666666666554  334555555555555443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.48  E-value=9.3e-12  Score=91.16  Aligned_cols=154  Identities=18%  Similarity=0.171  Sum_probs=115.0

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWR   96 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~   96 (227)
                      ++..++..|...+..|+|.+|+..|++++...|.+   +.+.+.+|.++...|+++.|+..+++.++.+|.+   +.+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            45677888899999999999999999999888776   3778888999999999999999999999998887   45788


Q ss_pred             HHHHHHHHc-----------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCCCCcHHHH
Q 027158           97 ELAEIYVSL-----------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILLA  148 (227)
Q Consensus        97 ~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~A  148 (227)
                      .+|.+++..           +...+|+..|+..+...|+++.                 --+.+|..|++.|.   +..|
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~---y~aA  160 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK---YKAA  160 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----HHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---HHHH
Confidence            888876654           3346889999999999888743                 23556788888888   9999


Q ss_pred             HHHHHHHhhhcCC--CchhHHHhHHHHHHHHHh
Q 027158          149 KKYYASTIDLTGG--KNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       149 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~  179 (227)
                      +..++.+++.-|+  ....++..++.++..++.
T Consensus       161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~  193 (203)
T PF13525_consen  161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGL  193 (203)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence            9999999998887  234556666666666664

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.48  E-value=9.3e-13  Score=108.49  Aligned_cols=135  Identities=17%  Similarity=0.118  Sum_probs=126.9

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      ...|...+..+...+..++|..++.++-..+|..+..|+..|.++...|.+.+|.+.|..++.++|+++.....+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcccHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          104 SLQMYKQAAF--CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       104 ~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..|+..-|..  ++..+++++|.++.+|+.+|.++...|+   .+.|.++|..++++.+.
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEES  786 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccC
Confidence            9999888888  9999999999999999999999999999   99999999999999875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=4.4e-12  Score=98.18  Aligned_cols=171  Identities=14%  Similarity=0.064  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      .-+..++-......|++...+..+|.+++..|++++|+..|+++...+|.+....-..|.++...|+++.-.......+.
T Consensus       215 a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~  294 (564)
T KOG1174|consen  215 ASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA  294 (564)
T ss_pred             hhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh
Confidence            34556666777788999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158           87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus        87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                      .+.....-|+--+.+.+...+++.|+.+-+++++.+|.+..++...|..+..+|+   .++|+-.|+.+..+.|- ..+.
T Consensus       295 ~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R---~~~A~IaFR~Aq~Lap~-rL~~  370 (564)
T KOG1174|consen  295 KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER---HTQAVIAFRTAQMLAPY-RLEI  370 (564)
T ss_pred             hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc---hHHHHHHHHHHHhcchh-hHHH
Confidence            8888888999999999999999999999999999999999999999999999999   99999999999999994 8999


Q ss_pred             HHhHHHHHHHHHhhh
Q 027158          167 LFGICLCSSAIAQLT  181 (227)
Q Consensus       167 ~~~l~~~~~~~~~~~  181 (227)
                      +.|+.-||...+.+.
T Consensus       371 Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  371 YRGLFHSYLAQKRFK  385 (564)
T ss_pred             HHHHHHHHHhhchHH
Confidence            999999998876643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.47  E-value=9.1e-12  Score=91.22  Aligned_cols=144  Identities=20%  Similarity=0.174  Sum_probs=116.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcC---
Q 027158            2 DCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQG---   72 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~---   72 (227)
                      +.|+|.+|+..|+.+...+|.+   +.+.+.+|.++...|+++.|+..+++.++.+|+++   .+++.+|.++....   
T Consensus        17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~   96 (203)
T PF13525_consen   17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI   96 (203)
T ss_dssp             HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence            5799999999999999999965   46789999999999999999999999999999875   67888888766543   


Q ss_pred             --------ChHHHHHHHHHHHHHcCCCHHH-----------------HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-
Q 027158           73 --------NFPTAIEWLNKYLETFMADHDA-----------------WRELAEIYVSLQMYKQAAFCYEELILSQPTVP-  126 (227)
Q Consensus        73 --------~~~~A~~~~~~~l~~~p~~~~~-----------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-  126 (227)
                              ...+|+..|+..+...|++..+                 -+.+|..|.+.|.|..|+..++.+++..|+.+ 
T Consensus        97 ~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~  176 (203)
T PF13525_consen   97 LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA  176 (203)
T ss_dssp             H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence                    3458999999999999998321                 23679999999999999999999999999885 


Q ss_pred             --HHHHHHHHHHHHcCCCCcHHHH
Q 027158          127 --LYHLAYADVLYTLGGVDNILLA  148 (227)
Q Consensus       127 --~~~~~la~~~~~~g~~~~~~~A  148 (227)
                        .++..++.++..+|.   ...|
T Consensus       177 ~~~al~~l~~~y~~l~~---~~~a  197 (203)
T PF13525_consen  177 AEEALARLAEAYYKLGL---KQAA  197 (203)
T ss_dssp             HHHHHHHHHHHHHHTT----HHHH
T ss_pred             HHHHHHHHHHHHHHhCC---hHHH
Confidence              578999999999998   6633

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.47  E-value=1.8e-12  Score=82.46  Aligned_cols=97  Identities=24%  Similarity=0.266  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      +..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++.++...|.++.++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCcHHHHHHHHHHHhhhcC
Q 027158          141 GVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~  160 (227)
                      +   ++.|...+.++++..|
T Consensus        83 ~---~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 K---YEEALEAYEKALELDP   99 (100)
T ss_pred             h---HHHHHHHHHHHHccCC
Confidence            5   5555555555555544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=5.3e-12  Score=94.48  Aligned_cols=123  Identities=15%  Similarity=0.018  Sum_probs=112.4

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc---cHHHHHHHH
Q 027158           39 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCY  115 (227)
Q Consensus        39 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~  115 (227)
                      +.+.-+.-++.-+..+|+++..|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++.+.   .-.++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            35566777888888999999999999999999999999999999999999999999999999987763   467899999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch
Q 027158          116 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  164 (227)
Q Consensus       116 ~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~  164 (227)
                      ++++..+|++..+.+.||..++..|+   +.+|...++..++..|...+
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~---~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGD---YAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999999999999999   99999999999999986343

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=8.6e-12  Score=93.35  Aligned_cols=123  Identities=20%  Similarity=0.041  Sum_probs=112.8

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWL   81 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~   81 (227)
                      ..+.-+.-++.-+..+|++..-|.++|.+|+..|+++.|...|.+++++.|++++++..+|.++..+.   ...++...|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            35666777888899999999999999999999999999999999999999999999999999776643   466899999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      ++++..+|.+..+.+.||..++..|+|.+|+..++..+...|.+..
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999999999999999999999886644

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.47  E-value=2.1e-12  Score=82.13  Aligned_cols=99  Identities=25%  Similarity=0.214  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  105 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  105 (227)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+...+..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCC
Q 027158          106 QMYKQAAFCYEELILSQPT  124 (227)
Q Consensus       106 ~~~~~A~~~~~~al~~~p~  124 (227)
                      |+++.|...+.+++...|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988773

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.47  E-value=1.7e-11  Score=99.56  Aligned_cols=169  Identities=19%  Similarity=0.163  Sum_probs=149.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      +|+-++|..+.+..+..++.+...|..+|.++....+|++|+.+|+.|+...|++..+|..++.+..+.|+++.....-.
T Consensus        54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~  133 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN  133 (700)
T ss_pred             ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---CCCHH--------------------------------
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ---PTVPL--------------------------------  127 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~--------------------------------  127 (227)
                      +.++..|..-..|...+..+.-.|++..|....+...+..   |....                                
T Consensus       134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~  213 (700)
T KOG1156|consen  134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK  213 (700)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence            9999999999999999999999999999998888777554   22111                                


Q ss_pred             -------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHH
Q 027158          128 -------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  175 (227)
Q Consensus       128 -------~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (227)
                             .....|.++..+|+   +++|...|...+..+|+ +...+.++..+..
T Consensus       214 ~i~Dkla~~e~ka~l~~kl~~---lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lg  264 (700)
T KOG1156|consen  214 QIVDKLAFEETKADLLMKLGQ---LEEAVKVYRRLLERNPD-NLDYYEGLEKALG  264 (700)
T ss_pred             HHHHHHHHhhhHHHHHHHHhh---HHhHHHHHHHHHhhCch-hHHHHHHHHHHHH
Confidence                   33445666677777   99999999999999996 7777777766664

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.46  E-value=6.6e-12  Score=83.88  Aligned_cols=103  Identities=20%  Similarity=0.226  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHH
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLA  131 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  131 (227)
                      +.+++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+.+|+.++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578899999999999999999999999999887   5789999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch
Q 027158          132 YADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  164 (227)
Q Consensus       132 la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~  164 (227)
                      +|.++...|+   +++|...+.++++..|+ +.
T Consensus        82 ~~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~  110 (119)
T TIGR02795        82 LGMSLQELGD---KEKAKATLQQVIKRYPG-SS  110 (119)
T ss_pred             HHHHHHHhCC---hHHHHHHHHHHHHHCcC-Ch
Confidence            9999999999   99999999999999996 44

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.46  E-value=3.5e-12  Score=105.15  Aligned_cols=125  Identities=28%  Similarity=0.320  Sum_probs=118.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH--H
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE--W   80 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~--~   80 (227)
                      .+..++|..++.++...+|-.+.++++.|.++...|++.+|.+.|..++..+|+++.+...+|.++...|+..-|..  .
T Consensus       663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~  742 (799)
T KOG4162|consen  663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSL  742 (799)
T ss_pred             cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999888888  9


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      +..+++++|.++++|+.+|.++...|+.++|.+||+.++++.+.+|.
T Consensus       743 L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  743 LSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999999999999999999999988764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.46  E-value=7e-12  Score=105.98  Aligned_cols=171  Identities=11%  Similarity=0.053  Sum_probs=138.9

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY   84 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   84 (227)
                      +...|...|-+++.++|....++..+|.+|...-+...|..+|+++++++|++..++...+..|....+++.|....-.+
T Consensus       473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~  552 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA  552 (1238)
T ss_pred             hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999888888888888888888886666


Q ss_pred             HHHcCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           85 LETFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        85 l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      -+..|..  ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|.   +..|++.|.++..++|. 
T Consensus       553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~-  628 (1238)
T KOG1127|consen  553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPL-  628 (1238)
T ss_pred             hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcH-
Confidence            6666543  34677788888888888888888888888888888888888888888888   88888888888888885 


Q ss_pred             chhHHHhHHHHHHHHHh
Q 027158          163 NTKALFGICLCSSAIAQ  179 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~  179 (227)
                      ...+.+-.+...-.++.
T Consensus       629 s~y~~fk~A~~ecd~Gk  645 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGK  645 (1238)
T ss_pred             hHHHHHHHHHHHHHhhh
Confidence            54444444444444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.46  E-value=7.1e-13  Score=79.90  Aligned_cols=65  Identities=25%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCC
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQP  123 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p  123 (227)
                      .+|..+|.++...|++++|+..|.++++.+|+++.+|+++|.++...| ++++|+..++++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            344444444444444444444444444444444444444444444444 34444444444444443

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.45  E-value=7.5e-13  Score=79.79  Aligned_cols=68  Identities=21%  Similarity=0.290  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhhcC
Q 027158           90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~~~~A~~~~~~~~~~~~  160 (227)
                      +++..|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| +   +.+|+..++++++++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence            367899999999999999999999999999999999999999999999999 8   9999999999999988

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.45  E-value=1e-11  Score=88.68  Aligned_cols=117  Identities=21%  Similarity=0.172  Sum_probs=79.8

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL   98 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l   98 (227)
                      .....++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++...|.++..+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            344566777777777788888888888777765543   35677777777777777777777777777777777777777


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           99 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        99 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      |.++...|+...+...++.++                    ..   +.+|...+++++..+|+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~--------------------~~---~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAE--------------------AL---FDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHH--------------------HH---HHHHHHHHHHHHhhCch
Confidence            777777776544443333322                    12   56666666666666664

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.44  E-value=9.3e-12  Score=88.57  Aligned_cols=119  Identities=15%  Similarity=0.126  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHH
Q 027158           40 WAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFC  114 (227)
Q Consensus        40 ~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~  114 (227)
                      +..+...+...++..+.+  ..++..+|.++...|++++|+..|++++.+.|+.   +.+|.++|.++...|++++|+.+
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444444444444444444  4556777777777777777777777777766553   34677777777777777777777


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHH-------HcCCCCcHH-------HHHHHHHHHhhhcCC
Q 027158          115 YEELILSQPTVPLYHLAYADVLY-------TLGGVDNIL-------LAKKYYASTIDLTGG  161 (227)
Q Consensus       115 ~~~al~~~p~~~~~~~~la~~~~-------~~g~~~~~~-------~A~~~~~~~~~~~~~  161 (227)
                      +++++.++|.....+..+|.++.       ..|+   ++       +|...|++++..+|+
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGD---SEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc---HHHHHHHHHHHHHHHHHHHHhCcc
Confidence            77777777777777777777777       4445   44       556666667777774

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.44  E-value=6.7e-12  Score=87.05  Aligned_cols=118  Identities=23%  Similarity=0.182  Sum_probs=101.4

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMY  108 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~  108 (227)
                      ...+++..+...++..+..+|++   ..+...+|.++...|++++|...|+.++...|+.   +.+...+|.++...|++
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            35788888988999999999988   4667788999999999999999999999987665   45788999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158          109 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus       109 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      ++|+..++. +...+..+.++..+|.++...|+   +++|+..|++++
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence            999999966 34445567788999999999999   999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.43  E-value=1.3e-11  Score=87.89  Aligned_cols=121  Identities=17%  Similarity=0.111  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      |..+...+...+...+..  ...++.+|.++...|++++|+..|++++...|+.   +.++..+|.++...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            455566666665555543  5677899999999999999999999999887653   46899999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHH-------HcccHH-------HHHHHHHHHHhhCCCCH
Q 027158           81 LNKYLETFMADHDAWRELAEIYV-------SLQMYK-------QAAFCYEELILSQPTVP  126 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~  126 (227)
                      +++++.++|.....+..+|.++.       ..|+++       +|+.+|++++..+|.+.
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999998       777766       56666667777777654

>PRK11906 transcriptional regulator; Provisional

Probab=99.43  E-value=3e-11  Score=95.71  Aligned_cols=151  Identities=10%  Similarity=-0.049  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHHH---HhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 027158            6 LDVAKDCIKVLQ---KQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN   73 (227)
Q Consensus         6 ~~~A~~~~~~~~---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~   73 (227)
                      .+.|+.+|.+++   ..+|+...++-.++.|++..         .+..+|..+..++++++|.|+.++..+|.+....++
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~  353 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ  353 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence            467888999999   88888899999998888765         345678888899999999999999999999998888


Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHcCCCCcHHHHHHHH
Q 027158           74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY-HLAYADVLYTLGGVDNILLAKKYY  152 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~~~~A~~~~  152 (227)
                      ++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..++++++++|.-..+ ...+..-.+.-..   .++|+..|
T Consensus       354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~---~~~~~~~~  430 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP---LKNNIKLY  430 (458)
T ss_pred             hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc---hhhhHHHH
Confidence            9999999999999999999999999999999999999999999999999976544 2333331333344   78888877


Q ss_pred             HHHhhhc
Q 027158          153 ASTIDLT  159 (227)
Q Consensus       153 ~~~~~~~  159 (227)
                      -+-.+..
T Consensus       431 ~~~~~~~  437 (458)
T PRK11906        431 YKETESE  437 (458)
T ss_pred             hhccccc
Confidence            6554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.42  E-value=3.3e-11  Score=83.55  Aligned_cols=117  Identities=21%  Similarity=0.246  Sum_probs=101.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFP   75 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~   75 (227)
                      +.++...+...++.++..+|++   ..+.+.+|.++...|++++|...|+.++...|+.   +.+...++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4578888888999999999988   5667889999999999999999999999987665   357888999999999999


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      +|+..++. +.-.+..+.++..+|.++...|++++|+..|++++
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999976 33444557788999999999999999999999874

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.42  E-value=9.7e-11  Score=87.88  Aligned_cols=149  Identities=15%  Similarity=0.033  Sum_probs=126.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcC---
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVG---RLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQG---   72 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~---   72 (227)
                      ..|++++|+..|++++..+|.++.+.   +.+|.++...+++++|+..+++.++.+|+++   .+++.+|.++...+   
T Consensus        44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~  123 (243)
T PRK10866         44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA  123 (243)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence            46899999999999999999876554   8899999999999999999999999988774   77888998875554   


Q ss_pred             ------------C---hHHHHHHHHHHHHHcCCCHH---H--------------HHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           73 ------------N---FPTAIEWLNKYLETFMADHD---A--------------WRELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        73 ------------~---~~~A~~~~~~~l~~~p~~~~---~--------------~~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                                  +   ..+|+..|++.++..|++..   +              -...|..|.+.|.|..|+.-++.++.
T Consensus       124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~  203 (243)
T PRK10866        124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLR  203 (243)
T ss_pred             hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence                        1   35788999999999999843   1              23668889999999999999999999


Q ss_pred             hCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158          121 SQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYA  153 (227)
Q Consensus       121 ~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~  153 (227)
                      ..|+.   +.++..++.+|..+|.   .++|.....
T Consensus       204 ~Yp~t~~~~eal~~l~~ay~~lg~---~~~a~~~~~  236 (243)
T PRK10866        204 DYPDTQATRDALPLMENAYRQLQL---NAQADKVAK  236 (243)
T ss_pred             HCCCCchHHHHHHHHHHHHHHcCC---hHHHHHHHH
Confidence            98876   5689999999999999   888876654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.41  E-value=1.8e-11  Score=100.67  Aligned_cols=155  Identities=19%  Similarity=0.112  Sum_probs=129.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHhcC
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGIL----------------------------LEAKGLWAEAEKAYSSLLEDN   54 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~----------------------------~~~~~~~~~A~~~~~~~l~~~   54 (227)
                      .|+-.+|..+..+.++ .|+++..|..+|++                            ....++|+++..+++..++++
T Consensus       437 lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n  515 (777)
T KOG1128|consen  437 LGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN  515 (777)
T ss_pred             hcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence            3555667777777766 44455555555542                            233478999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           55 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        55 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                      |-....|+.+|.+..+.+++..|...|..++.++|++..+|.+++..|...++-.+|...+.+|++.+-+++..|-+...
T Consensus       516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENyml  595 (777)
T KOG1128|consen  516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYML  595 (777)
T ss_pred             ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888889999988


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +....|.   +++|+..|.+.+++...
T Consensus       596 vsvdvge---~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  596 VSVDVGE---FEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             hhhhccc---HHHHHHHHHHHHHhhhh
Confidence            9999999   99999999998887543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.41  E-value=6e-11  Score=101.97  Aligned_cols=135  Identities=15%  Similarity=0.012  Sum_probs=123.3

Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH-------
Q 027158           20 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------   92 (227)
Q Consensus        20 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------   92 (227)
                      .|.+..++..+...+...+++++|+..+..+++.+|+...+++.+|.++.+.+++.++...  .++...+.+.       
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            4688899999999999999999999999999999999999999999999998887776665  6666666555       


Q ss_pred             ------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           93 ------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        93 ------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                                  .+++.+|.||-.+|++++|...|+++++.+|+++.++.++|..|... +   +++|..++.+++...-
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~~~i  180 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHHHH
Confidence                        89999999999999999999999999999999999999999999999 8   9999999999998743

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.41  E-value=5.5e-11  Score=98.11  Aligned_cols=139  Identities=13%  Similarity=0.049  Sum_probs=115.8

Q ss_pred             hCCCchhh--HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHH
Q 027158           19 QFPESKRV--GRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--------NFPTAIEWLNKYL   85 (227)
Q Consensus        19 ~~p~~~~~--~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~l   85 (227)
                      ..|.++.+  +++.|..+...++   ...|+.+|+++++.+|++..++..++.++....        +...+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            34555555  4567777766654   779999999999999999999998888775542        2345555666655


Q ss_pred             HH--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           86 ET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        86 ~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .+  +|.++.++..+|..+...|++++|...+++|+.++| +..++..+|.++...|+   .++|...|.+++.++|.
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Confidence            53  777889999999999999999999999999999999 58899999999999999   99999999999999996

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.40  E-value=5.3e-12  Score=106.70  Aligned_cols=171  Identities=16%  Similarity=0.064  Sum_probs=157.0

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChHHHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      +...|..+|+++.+.+|.+..+.-..+..|....+++.|....-++-+..|-..  ..|..+|..|...++...|+..|+
T Consensus       507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ  586 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ  586 (1238)
T ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence            456799999999999999999999999999999999999999777766666443  556779999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      .++..+|.+.+.|..+|.+|...|.|..|+..|.++..++|.+....+..|.+...+|+   +.+|+..+...+..... 
T Consensus       587 sALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk---Ykeald~l~~ii~~~s~-  662 (1238)
T KOG1127|consen  587 SALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK---YKEALDALGLIIYAFSL-  662 (1238)
T ss_pred             HHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999999999999999999999999999999999999999   99999999999998885 


Q ss_pred             chhHHHhHHHHHHHHHh
Q 027158          163 NTKALFGICLCSSAIAQ  179 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~  179 (227)
                      ...++.|++.++.+...
T Consensus       663 e~~~q~gLaE~~ir~ak  679 (1238)
T KOG1127|consen  663 ERTGQNGLAESVIRDAK  679 (1238)
T ss_pred             HHHhhhhHHHHHHHHHH
Confidence            88888899999888765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.38  E-value=3.2e-12  Score=80.11  Aligned_cols=81  Identities=27%  Similarity=0.324  Sum_probs=54.8

Q ss_pred             cCChHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 027158           71 QGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  148 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  148 (227)
                      +|+++.|+..++++++..|.  +...++.+|.+++..|+|++|+.++++ ...+|.++..++.+|.++..+|+   +++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HHHH
Confidence            46677777777777777774  345566677777777777777777777 66666666666677777777777   7777


Q ss_pred             HHHHHHH
Q 027158          149 KKYYAST  155 (227)
Q Consensus       149 ~~~~~~~  155 (227)
                      +..|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            7776653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.38  E-value=2.8e-11  Score=86.40  Aligned_cols=100  Identities=16%  Similarity=0.072  Sum_probs=85.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  130 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  130 (227)
                      .+....+++.+|..+...|++++|+.+|++++...|+.   +.++..+|.++...|++++|+.++++++...|.++..+.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            34556788999999999999999999999999987764   468999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158          131 AYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus       131 ~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      .+|.++...|+   ...+...+..++
T Consensus       111 ~lg~~~~~~g~---~~~a~~~~~~A~  133 (172)
T PRK02603        111 NIAVIYHKRGE---KAEEAGDQDEAE  133 (172)
T ss_pred             HHHHHHHHcCC---hHhHhhCHHHHH
Confidence            99999999887   544444444333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.37  E-value=2.6e-11  Score=100.03  Aligned_cols=124  Identities=15%  Similarity=0.102  Sum_probs=108.5

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--------GLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGN   73 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~   73 (227)
                      +....|+.+|+++++.+|++..++..++.++...        ++...+.....+++..  +|.++.++..+|......|+
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~  435 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence            4578999999999999999999999888877554        2345666667776664  77788999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      +++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++..
T Consensus       436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            9999999999999999 58899999999999999999999999999999998753

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=4.2e-11  Score=92.80  Aligned_cols=131  Identities=19%  Similarity=0.139  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNP----LD-----------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD   91 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~   91 (227)
                      ....|+.++..|+|..|...|++++..-.    .+           ..++.+++.|+..++++..|+..++++|.++|.|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            45678899999999999999999887522    11           3567888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhhhcC
Q 027158           92 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL-LAKKYYASTIDLTG  160 (227)
Q Consensus        92 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~-~A~~~~~~~~~~~~  160 (227)
                      ..+++..|.++...|+|+.|+..|++++++.|+|..+...+..+..+...   +. ...+.|..++...+
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~---~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE---YEEKEKKMYANMFAKLA  357 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999998888888887776665   44 44677887777654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.36  E-value=3.4e-12  Score=80.03  Aligned_cols=81  Identities=28%  Similarity=0.317  Sum_probs=54.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158           37 KGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  114 (227)
Q Consensus        37 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~  114 (227)
                      +|+++.|+.+++++++..|.  +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.++...|+|++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46677777777777777664  344555667777777777777777777 666666666666777777777777777777


Q ss_pred             HHHH
Q 027158          115 YEEL  118 (227)
Q Consensus       115 ~~~a  118 (227)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            6654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.36  E-value=2.8e-10  Score=93.57  Aligned_cols=157  Identities=20%  Similarity=0.132  Sum_probs=128.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----ChHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-----NFPT   76 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----~~~~   76 (227)
                      +.|++++|+..+.......++...+....|.++...|++++|...|...+..+|++...+..+..+.....     ..+.
T Consensus        16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~   95 (517)
T PF12569_consen   16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK   95 (517)
T ss_pred             HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence            46899999999999988889999999999999999999999999999999999999888877777662221     2222


Q ss_pred             HHHHHHHHHHH---------------------------------------------------------------------
Q 027158           77 AIEWLNKYLET---------------------------------------------------------------------   87 (227)
Q Consensus        77 A~~~~~~~l~~---------------------------------------------------------------------   87 (227)
                      -..+|.+....                                                                     
T Consensus        96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~  175 (517)
T PF12569_consen   96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES  175 (517)
T ss_pred             HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence            33333331000                                                                     


Q ss_pred             ------------cCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158           88 ------------FMADH--DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  153 (227)
Q Consensus        88 ------------~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  153 (227)
                                  .|...  .+++.+|..|...|++++|+.+.++++...|+.+..+...|.++-..|+   +.+|...+.
T Consensus       176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~---~~~Aa~~~~  252 (517)
T PF12569_consen  176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD---LKEAAEAMD  252 (517)
T ss_pred             cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHH
Confidence                        01111  2457889999999999999999999999999999999999999999999   999999999


Q ss_pred             HHhhhcCC
Q 027158          154 STIDLTGG  161 (227)
Q Consensus       154 ~~~~~~~~  161 (227)
                      .+..+++.
T Consensus       253 ~Ar~LD~~  260 (517)
T PF12569_consen  253 EARELDLA  260 (517)
T ss_pred             HHHhCChh
Confidence            99999884

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.35  E-value=4.1e-12  Score=75.59  Aligned_cols=57  Identities=25%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           67 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        67 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      .+...|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+.+|++++..+|
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            333333333333333333333333333333333333333333333333333333333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.35  E-value=1.1e-10  Score=88.23  Aligned_cols=100  Identities=13%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             HHHHHHHHHH-HHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHH
Q 027158           59 VLHKRRVAIA-KAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLA  131 (227)
Q Consensus        59 ~~~~~l~~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  131 (227)
                      ..++..+..+ ...|++++|+..|+..+..+|++   +.+++.+|.+|+..|++++|+..|++++...|++   +.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3444444433 34456666666666666666655   3566666666666666666666666666555543   445555


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          132 YADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       132 la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +|.++..+|+   +++|...|+++++..|+
T Consensus       223 lg~~~~~~g~---~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        223 VGVIMQDKGD---TAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHcCC---HHHHHHHHHHHHHHCcC
Confidence            6666666666   66666666666666554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.33  E-value=1.2e-11  Score=73.51  Aligned_cols=65  Identities=22%  Similarity=0.219  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 027158           28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH   92 (227)
Q Consensus        28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~   92 (227)
                      +.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=99.32  E-value=6.9e-11  Score=81.37  Aligned_cols=102  Identities=9%  Similarity=-0.115  Sum_probs=92.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      .++.-...+..|.-++..|++++|..+|+-..-.+|.+++.|..||-++...++|++|+.+|-.+..+++++|...+..|
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            44455677788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      .|+..+|+   ...|...|..++..
T Consensus       113 qC~l~l~~---~~~A~~~f~~a~~~  134 (165)
T PRK15331        113 QCQLLMRK---AAKARQCFELVNER  134 (165)
T ss_pred             HHHHHhCC---HHHHHHHHHHHHhC
Confidence            99999999   99999999999884

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.32  E-value=3.4e-11  Score=92.52  Aligned_cols=149  Identities=17%  Similarity=0.086  Sum_probs=104.3

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  102 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  102 (227)
                      ++.+....|.++...|++++|+..+.+.     .+.++......++...++++.|.+.++.+-+.+.++.-.....+.+.
T Consensus       101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~  175 (290)
T PF04733_consen  101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN  175 (290)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            4455566677777778888887766543     45666667777888888888888888887776665555555555555


Q ss_pred             HHcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158          103 VSLQ--MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  180 (227)
Q Consensus       103 ~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (227)
                      +..|  .+.+|...|++.....|.++..+..+|.++..+|+   +++|...+.+++..+|. ++..+.+++.|...+++.
T Consensus       176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~---~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH---YEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT----HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-T
T ss_pred             HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCC
Confidence            5555  47888888888777767777788888888888888   88888888888888885 777888888777776664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK11906 transcriptional regulator; Provisional

Probab=99.31  E-value=3.4e-10  Score=89.87  Aligned_cols=131  Identities=13%  Similarity=-0.033  Sum_probs=118.9

Q ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHcCCCH
Q 027158           28 RLEGILLEAKG---LWAEAEKAYSSLL---EDNPLDPVLHKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADH   92 (227)
Q Consensus        28 ~~~a~~~~~~~---~~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~l~~~p~~~   92 (227)
                      ++.|......+   ..+.|..+|.+++   ..+|+...++..++.|++..         ....+|...-+++++++|.|+
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            66777666554   4567899999999   89999999999999988764         245688999999999999999


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           93 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .++..+|.+....++++.|...|++|+.++|+...+++..|.+....|+   .++|...++++++++|.
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCch
Confidence            9999999999999999999999999999999999999999999999999   99999999999999995

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.31  E-value=1.3e-10  Score=92.15  Aligned_cols=120  Identities=19%  Similarity=0.074  Sum_probs=95.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  110 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~  110 (227)
                      -.++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+++++..+|.+...+...+..+...++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            34555567888888888888877765   445577777778888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158          111 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus       111 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      |+.+.++++...|.+...|..||.+|...|+   ++.|+..++.+=
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~P  295 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcCc
Confidence            8888888888888888888888888888888   888887776443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.30  E-value=6.1e-11  Score=97.55  Aligned_cols=166  Identities=14%  Similarity=0.048  Sum_probs=136.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI---------------   67 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~---------------   67 (227)
                      .|-...|+.+++++        ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+               
T Consensus       411 lGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn  481 (777)
T KOG1128|consen  411 LGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSN  481 (777)
T ss_pred             cchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhh
Confidence            45555666666655        3455567888999999999998888888 55555555544432               


Q ss_pred             -------------HHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           68 -------------AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        68 -------------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                                   ..+.+++.++..+++..++++|-....|+.+|.++.+.+++..|..+|...+..+|++..+|.+++.
T Consensus       482 ~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~  561 (777)
T KOG1128|consen  482 YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLST  561 (777)
T ss_pred             hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhH
Confidence                         2335789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      +|...|+   -.+|...+.++++-+-. +...|.+..++...++.++
T Consensus       562 ayi~~~~---k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~e  604 (777)
T KOG1128|consen  562 AYIRLKK---KKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFE  604 (777)
T ss_pred             HHHHHhh---hHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHH
Confidence            9999999   99999999999999864 7777777777766666544

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.30  E-value=1.3e-09  Score=96.70  Aligned_cols=170  Identities=18%  Similarity=0.131  Sum_probs=91.0

Q ss_pred             CCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIE   79 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~   79 (227)
                      .|++++|..+|+.+...+ +.+...+..+...|.+.|++++|..+|.++...  .| +...|..+...+...|++++|..
T Consensus       592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~  670 (1060)
T PLN03218        592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFE  670 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHH
Confidence            345555555555555544 234445555555555555555555555555544  22 24455555555555666666666


Q ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           80 WLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        80 ~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      .++.+.+.. +.+...|..+...|.+.|++++|..+|++..... ..+...|..+...|.+.|+   +++|...|.+...
T Consensus       671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~---~eeAlelf~eM~~  747 (1060)
T PLN03218        671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ---LPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence            665555443 2345556666666666666666666666654321 1234556666666666666   6666666666554


Q ss_pred             hcCCCchhHHHhHHHHHHH
Q 027158          158 LTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~~  176 (227)
                      ..-.++...+..+..++.+
T Consensus       748 ~Gi~Pd~~Ty~sLL~a~~k  766 (1060)
T PLN03218        748 LGLCPNTITYSILLVASER  766 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHH
Confidence            3221233444444444433

>PRK15331 chaperone protein SicA; Provisional

Probab=99.30  E-value=1e-10  Score=80.50  Aligned_cols=104  Identities=13%  Similarity=0.050  Sum_probs=96.1

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  101 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  101 (227)
                      +.....+..|.-++..|++++|..+|+-..-.+|.++..|..+|.|+...+++++|+..|-.+..+++++|...+..|.|
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            34456778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcccHHHHHHHHHHHHhhCCCCH
Q 027158          102 YVSLQMYKQAAFCYEELILSQPTVP  126 (227)
Q Consensus       102 ~~~~~~~~~A~~~~~~al~~~p~~~  126 (227)
                      ++..|+.+.|..+|+.++. .|.+.
T Consensus       115 ~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHh-CcchH
Confidence            9999999999999999998 45533

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.28  E-value=2.6e-10  Score=86.27  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=94.5

Q ss_pred             hhHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHH
Q 027158           25 RVGRLEGILL-EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRE   97 (227)
Q Consensus        25 ~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~   97 (227)
                      ...+..+..+ ...|+|++|+..|+..++.+|++   +.+++.+|.+++..|++++|+..|++++..+|++   +++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            5566677765 56799999999999999999998   5799999999999999999999999999998885   789999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      +|.++...|++++|...|++++...|++..+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999998754

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.28  E-value=4.1e-10  Score=89.41  Aligned_cols=114  Identities=23%  Similarity=0.291  Sum_probs=105.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      +++++.|+.+++++...+|+   +...++.++...++..+|+..+++++...|.+...+...+..+...++++.|+...+
T Consensus       182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk  258 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK  258 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            47899999999999988875   667789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      +++.+.|.+...|..|+.+|...|+++.|+..++.+-
T Consensus       259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  259 KAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999999999999999999998776543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.28  E-value=2.2e-09  Score=95.38  Aligned_cols=172  Identities=11%  Similarity=0.017  Sum_probs=96.4

Q ss_pred             CChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHH
Q 027158            4 QCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      |++++|..++..+...    .| +...+..+...|...|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|+
T Consensus       556 G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl  634 (1060)
T PLN03218        556 GAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL  634 (1060)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence            4555555555555432    12 23344445555555566666666666555543 334455566666666666666666


Q ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158           79 EWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus        79 ~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      ..|.+..+.. ..+...|..+...|...|++++|..+++.+.+.. +.+...+..+...|.+.|+   +++|...|++..
T Consensus       635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~---~eeA~~lf~eM~  711 (1060)
T PLN03218        635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN---WKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence            6666655441 1134556666666666666666666666666543 2345566666667777777   777777777665


Q ss_pred             hhcCCCchhHHHhHHHHHHHHHh
Q 027158          157 DLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +....++...|..++..+.+.++
T Consensus       712 ~~g~~PdvvtyN~LI~gy~k~G~  734 (1060)
T PLN03218        712 SIKLRPTVSTMNALITALCEGNQ  734 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHHCCC
Confidence            43222245555555555554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.27  E-value=5.4e-10  Score=74.07  Aligned_cols=97  Identities=19%  Similarity=0.056  Sum_probs=77.6

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC---CHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---DHDAWRE   97 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~   97 (227)
                      +.+++..|.++...|+.++|+.+|++++...++.   ..++..+|..+...|++++|+..+++.+..+|+   +......
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            3567788888888888888888888888865444   467778888888888888888888888888887   6777788


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHh
Q 027158           98 LAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      ++.++...|++++|+..+-.++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888888888888888776663

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=3.3e-10  Score=87.95  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      .....|..+++.|+|..|...|++++..-+..               ..++.+++.++.+++.|..|+..+.+++.++|+
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~  289 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN  289 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            34577899999999999999999998764422               237889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          125 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       125 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      |..++++.|.++..+|+   ++.|+..|++++++.|+ +-.+...++.|..++....
T Consensus       290 N~KALyRrG~A~l~~~e---~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~  342 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGE---YDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYE  342 (397)
T ss_pred             chhHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   99999999999999996 8778888888888877633

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.22  E-value=6e-09  Score=85.85  Aligned_cols=118  Identities=15%  Similarity=-0.033  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      .+++.++..|...|++++|+.+++++|+..|..++.+...|.++-+.|++.+|..+++.|..+++.+-......+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            35578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHhhhc--CCCc------hhHHHhHHHHHHHHHh
Q 027158          139 LGGVDNILLAKKYYASTIDLT--GGKN------TKALFGICLCSSAIAQ  179 (227)
Q Consensus       139 ~g~~~~~~~A~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~  179 (227)
                      .|+   +++|...+......+  |..+      .+.....+.++.+.++
T Consensus       275 a~~---~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  275 AGR---IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCC---HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999   999999887776654  2111      2333345555665554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.22  E-value=1.1e-10  Score=89.67  Aligned_cols=151  Identities=16%  Similarity=0.067  Sum_probs=121.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--NFPTAIEW   80 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~   80 (227)
                      .|++++|+..+.+.     .+.+.......++...++++.|.+.++.+-+.+.+........+.+.+..|  .+.+|...
T Consensus       115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~  189 (290)
T PF04733_consen  115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI  189 (290)
T ss_dssp             CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            46666666655432     567778888899999999999999999998888776665555555666655  69999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhhhc
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI-LLAKKYYASTIDLT  159 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~-~~A~~~~~~~~~~~  159 (227)
                      |+...+.+|.++..+..++.+++.+|+|++|...+++++..+|+++.++.+++.+....|+   . +.+.+++.+....+
T Consensus       190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk---~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK---PTEAAERYLSQLKQSN  266 (290)
T ss_dssp             HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT----TCHHHHHHHHHCHHHT
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHhC
Confidence            9999888889999999999999999999999999999999999999999999999999998   6 55667777777788


Q ss_pred             CC
Q 027158          160 GG  161 (227)
Q Consensus       160 ~~  161 (227)
                      |.
T Consensus       267 p~  268 (290)
T PF04733_consen  267 PN  268 (290)
T ss_dssp             TT
T ss_pred             CC
Confidence            85

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.21  E-value=7.1e-11  Score=70.83  Aligned_cols=64  Identities=31%  Similarity=0.411  Sum_probs=36.9

Q ss_pred             HcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           70 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      ..|++++|+..|++++..+|+++.++..+|.+++..|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            4555566666666666666666666666666666666666666666666665555555554444

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.21  E-value=4.6e-10  Score=80.23  Aligned_cols=154  Identities=17%  Similarity=0.105  Sum_probs=107.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|-.+.|..-|.+++...|+-+.++..+|..+...|+++.|.+.|+..++++|....+..++|..+.--|++.-|...+.
T Consensus        78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~  157 (297)
T COG4785          78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL  157 (297)
T ss_pred             hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence            35566677778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCCHH--HHH--------------HHHHHHHHc--------------ccHHHHHHHHHHHHhhCCCC-------
Q 027158           83 KYLETFMADHD--AWR--------------ELAEIYVSL--------------QMYKQAAFCYEELILSQPTV-------  125 (227)
Q Consensus        83 ~~l~~~p~~~~--~~~--------------~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~-------  125 (227)
                      +.-+.+|++|-  .|.              ++..-+...              |+.. -...++++.....++       
T Consensus       158 ~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~L  236 (297)
T COG4785         158 AFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS-EETLMERLKADATDNTSLAEHL  236 (297)
T ss_pred             HHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhcc-HHHHHHHHHhhccchHHHHHHH
Confidence            88888888753  332              222222211              1111 012223333222222       


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          126 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       126 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ..+++.+|..+...|+   ..+|...|+-++.-+-
T Consensus       237 TEtyFYL~K~~l~~G~---~~~A~~LfKLaiannV  268 (297)
T COG4785         237 TETYFYLGKYYLSLGD---LDEATALFKLAVANNV  268 (297)
T ss_pred             HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhH
Confidence            2367788888888888   9999999988887654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.19  E-value=1.4e-09  Score=93.99  Aligned_cols=164  Identities=12%  Similarity=0.029  Sum_probs=97.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      .|++++|..+|+.+.   +.+...|..+...|...|++++|..+|+++.... .-+...+..+...+...|++++|.+.+
T Consensus       272 ~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~  348 (697)
T PLN03081        272 CGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH  348 (697)
T ss_pred             CCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence            466667776666542   2355566666777777777777777777665542 223455666666666666666666666


Q ss_pred             HHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           82 NKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        82 ~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ..+++.. +.+...+..+...|.+.|++++|...|++...   .+...|..+...|...|+   .++|+..|++..+...
T Consensus       349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~---~~~A~~lf~~M~~~g~  422 (697)
T PLN03081        349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGR---GTKAVEMFERMIAEGV  422 (697)
T ss_pred             HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence            6666654 34455666666666666666666666665532   234556666666666666   6666666666655432


Q ss_pred             CCchhHHHhHHHHHH
Q 027158          161 GKNTKALFGICLCSS  175 (227)
Q Consensus       161 ~~~~~~~~~l~~~~~  175 (227)
                      .++...+..+..++.
T Consensus       423 ~Pd~~T~~~ll~a~~  437 (697)
T PLN03081        423 APNHVTFLAVLSACR  437 (697)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            223444444444333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.17  E-value=2.9e-09  Score=82.09  Aligned_cols=150  Identities=20%  Similarity=0.178  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HD   93 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~   93 (227)
                      .+..-|.+|...|+|++|...|.++....-  ++    ...+...+.++... ++++|+.++++++.+.-..      +.
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~  115 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK  115 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            345568888999999999999999977531  11    35566666676666 9999999999999874322      55


Q ss_pred             HHHHHHHHHHHc-ccHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-----
Q 027158           94 AWRELAEIYVSL-QMYKQAAFCYEELILSQP--TV----PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----  161 (227)
Q Consensus        94 ~~~~la~~~~~~-~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-----  161 (227)
                      .+..+|.+|... |++++|+.+|++|+....  +.    ...+..+|.++...|+   |++|+..|+++....-+     
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~---y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR---YEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhhcccccc
Confidence            788999999999 999999999999997642  12    3468899999999999   99999999999875322     


Q ss_pred             Cch-hHHHhHHHHHHHHHh
Q 027158          162 KNT-KALFGICLCSSAIAQ  179 (227)
Q Consensus       162 ~~~-~~~~~l~~~~~~~~~  179 (227)
                      ... ..++..++|+...++
T Consensus       193 ~~~~~~~l~a~l~~L~~~D  211 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGD  211 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-
T ss_pred             hhHHHHHHHHHHHHHHcCC
Confidence            122 234566777777654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.16  E-value=1.7e-10  Score=69.15  Aligned_cols=66  Identities=23%  Similarity=0.219  Sum_probs=45.0

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      +..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            455677777777777777777777777777777777777777777777777777776666555543

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.15  E-value=7.4e-09  Score=79.79  Aligned_cols=155  Identities=18%  Similarity=0.164  Sum_probs=115.8

Q ss_pred             CCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKA   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~   70 (227)
                      .|++++|...|.++....-      .-...+...+.++... ++++|+.+|++++...-  +.    ..++..+|.+|..
T Consensus        48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~  126 (282)
T PF14938_consen   48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE  126 (282)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred             HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            3677788888887766532      1223445555665554 99999999999998732  22    4678899999999


Q ss_pred             c-CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHH
Q 027158           71 Q-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----P---LYHLAYADVL  136 (227)
Q Consensus        71 ~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~---~~~~~la~~~  136 (227)
                      . |++++|+++|++++++....      ...+..+|.++...|+|++|+..|+++....-++    .   ..++..+.|+
T Consensus       127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~  206 (282)
T PF14938_consen  127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH  206 (282)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence            8 99999999999999985432      4467899999999999999999999998754221    1   3566778899


Q ss_pred             HHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          137 YTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ...|+   ...|...+.+....+|.
T Consensus       207 L~~~D---~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  207 LAMGD---YVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHTT----HHHHHHHHHHHGTTSTT
T ss_pred             HHcCC---HHHHHHHHHHHHhhCCC
Confidence            99999   99999999999999986

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.15  E-value=4.8e-10  Score=68.18  Aligned_cols=65  Identities=25%  Similarity=0.257  Sum_probs=36.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158           66 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  130 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  130 (227)
                      .++...+++++|+.++++++.++|+++..|..+|.++...|++.+|+..++++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555544433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.14  E-value=3.1e-09  Score=70.48  Aligned_cols=97  Identities=20%  Similarity=0.135  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT---VPLYHLAY  132 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  132 (227)
                      .+++.++.++-..|+.++|+.+|++++...+..   ..+++.+|..+...|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999976554   568999999999999999999999999999888   77888889


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          133 ADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       133 a~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      +.+++..|+   .++|+..+..++.-
T Consensus        82 Al~L~~~gr---~~eAl~~~l~~la~  104 (120)
T PF12688_consen   82 ALALYNLGR---PKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHCCC---HHHHHHHHHHHHHH
Confidence            999999999   99999999887763

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.14  E-value=5.1e-09  Score=90.61  Aligned_cols=149  Identities=15%  Similarity=0.079  Sum_probs=97.4

Q ss_pred             CCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      .|++++|+.+|+++.... ..+...+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...
T Consensus       303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v  382 (697)
T PLN03081        303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV  382 (697)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence            577788888888776643 2244566666677777777777777777777664 44556666777777777777777777


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      |++..+   .+...|..+...|...|+.++|+.+|++..... ..+..++..+...+...|.   .++|...|+...+
T Consensus       383 f~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~---~~~a~~~f~~m~~  454 (697)
T PLN03081        383 FDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL---SEQGWEIFQSMSE  454 (697)
T ss_pred             HHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc---HHHHHHHHHHHHH
Confidence            776542   245567777777777777777777777766432 1234445555566666666   6666666666654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=4.3e-08  Score=77.80  Aligned_cols=164  Identities=18%  Similarity=0.171  Sum_probs=139.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCC----chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPE----SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA   77 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A   77 (227)
                      +..+.+.+..+|+..++..|.    ...+|.+.|....++.+...|.+.+-.++-..|.+- ++.....+-..+++++..
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRc  456 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRC  456 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHH
Confidence            456788999999999999994    568899999999999999999999999999999854 455777888899999999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY--HLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      ..+|++.++..|.+..+|...|.+-...|+.+.|...|+-|+....-+..-  |-.+-..-...|.   ++.|...|++.
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E---~ekaR~LYerl  533 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE---FEKARALYERL  533 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch---HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999877655443  4444445566777   99999999999


Q ss_pred             hhhcCCCchhHHHhHH
Q 027158          156 IDLTGGKNTKALFGIC  171 (227)
Q Consensus       156 ~~~~~~~~~~~~~~l~  171 (227)
                      ++..+  ....|...+
T Consensus       534 L~rt~--h~kvWisFA  547 (677)
T KOG1915|consen  534 LDRTQ--HVKVWISFA  547 (677)
T ss_pred             HHhcc--cchHHHhHH
Confidence            99988  333554443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=5.6e-09  Score=84.45  Aligned_cols=150  Identities=13%  Similarity=0.022  Sum_probs=123.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|+|++|.....+++...|++..+......++.+.++|++|+...+.-..... +....+..+.|.++.+..++|+..+
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~Dealk~~  102 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDEALKTL  102 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHHHHHHH
Confidence            357899999999999999999999999999999999999999955443332211 2233378999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-------------------------------CHHHHH
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-------------------------------VPLYHL  130 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~~~~~  130 (227)
                      +   -.++.+..+....|++++++|+|++|+..|+..++.+.+                               +....+
T Consensus       103 ~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~y  179 (652)
T KOG2376|consen  103 K---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLY  179 (652)
T ss_pred             h---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHH
Confidence            9   467777788899999999999999999999988643221                               334788


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          131 AYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       131 ~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      +.|.++...|+   |.+|++.+++++++
T Consensus       180 N~Ac~~i~~gk---y~qA~elL~kA~~~  204 (652)
T KOG2376|consen  180 NTACILIENGK---YNQAIELLEKALRI  204 (652)
T ss_pred             HHHHHHHhccc---HHHHHHHHHHHHHH
Confidence            99999999999   99999999999443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=3e-08  Score=76.07  Aligned_cols=157  Identities=13%  Similarity=0.033  Sum_probs=123.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      ...+|.-|+.+++-....+.. ...+...+|.|++..|+|++|...|.-+...+.-+...+.+++-|++-.|.+.+|...
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~  113 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI  113 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            356788899888887766543 3356677899999999999999999999987767788999999999999999999887


Q ss_pred             HHHHH--------------HHc------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           81 LNKYL--------------ETF------------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        81 ~~~~l--------------~~~------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                      ..++-              +++            .+..+-...||.+.+..-.|.+|++.|.+++.-+|+.......+|.
T Consensus       114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~AL  193 (557)
T KOG3785|consen  114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMAL  193 (557)
T ss_pred             HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHH
Confidence            76641              111            1112234456667777778888899998888888888878888888


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ||+++.-   ++-+.+.+.-.++..|+
T Consensus       194 CyyKlDY---ydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  194 CYYKLDY---YDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHHhcch---hhhHHHHHHHHHHhCCC
Confidence            8888888   88888888888888885

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=3.1e-09  Score=79.58  Aligned_cols=153  Identities=15%  Similarity=0.046  Sum_probs=129.6

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      .+|..|++++..-.+..|.+...+..+|.||....++..|..+|++.-...|.........+..+...+.+..|+.....
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~  103 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL  103 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            46888999999999999999999999999999999999999999999999998877666677777777776666555443


Q ss_pred             HH----------H--------------------HcC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 027158           84 YL----------E--------------------TFM--ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA  131 (227)
Q Consensus        84 ~l----------~--------------------~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  131 (227)
                      ..          +                    .-|  ++++...+.|-+.++.|+++.|+.-|+.+++....++..-++
T Consensus       104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn  183 (459)
T KOG4340|consen  104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN  183 (459)
T ss_pred             hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHH
Confidence            21          1                    123  346677889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          132 YADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       132 la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      +|.+++..|+   +..|+.+..+.++..
T Consensus       184 iALaHy~~~q---yasALk~iSEIieRG  208 (459)
T KOG4340|consen  184 LALAHYSSRQ---YASALKHISEIIERG  208 (459)
T ss_pred             HHHHHHhhhh---HHHHHHHHHHHHHhh
Confidence            9999999999   999999888877653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.11  E-value=4.3e-08  Score=72.28  Aligned_cols=157  Identities=15%  Similarity=0.086  Sum_probs=114.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc---
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQ---   71 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~---   71 (227)
                      |+.|++++|...|+.+...+|.   ...+...++..+...+++++|+...++.+..+|+++   .+++..|.+++..   
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            4568888888888888888874   356778888888888888888888888888887765   4566666665542   


Q ss_pred             -----CChHHHHHHHHHHHHHcCCCHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---H
Q 027158           72 -----GNFPTAIEWLNKYLETFMADHD-----------------AWRELAEIYVSLQMYKQAAFCYEELILSQPTV---P  126 (227)
Q Consensus        72 -----~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~  126 (227)
                           .....|+..|+..++..|++.-                 --..+|..|.+.|.|-.|+..++.+++..|+.   .
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~  204 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR  204 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence                 1245778888888888888721                 12356778888888888888888888877654   3


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .++..+..+|..+|-   .++|... .+++..++.
T Consensus       205 eaL~~l~eaY~~lgl---~~~a~~~-~~vl~~N~p  235 (254)
T COG4105         205 EALARLEEAYYALGL---TDEAKKT-AKVLGANYP  235 (254)
T ss_pred             HHHHHHHHHHHHhCC---hHHHHHH-HHHHHhcCC
Confidence            567778888888887   6666543 455555543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.09  E-value=1.2e-08  Score=68.96  Aligned_cols=104  Identities=19%  Similarity=0.142  Sum_probs=64.0

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH---HHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAWR   96 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~   96 (227)
                      .+..++..|...+..|+|++|++.|+.+....|..   ..+...++.+++..+++++|+..+++.++++|.++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            34455666666666677777777777666665543   35566666667777777777777777777766663   3566


Q ss_pred             HHHHHHHHccc---------------HHHHHHHHHHHHhhCCCCH
Q 027158           97 ELAEIYVSLQM---------------YKQAAFCYEELILSQPTVP  126 (227)
Q Consensus        97 ~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~  126 (227)
                      ..|.+++.+..               ...|...|++.+...|++.
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            66666665544               4555555555555555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.08  E-value=1.3e-09  Score=66.26  Aligned_cols=69  Identities=28%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA   99 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la   99 (227)
                      ..++...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+....+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            467888999999999999999999999999999999999999999999999999999998887665443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.08  E-value=2e-09  Score=83.87  Aligned_cols=177  Identities=17%  Similarity=0.070  Sum_probs=135.7

Q ss_pred             CCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhcCC-
Q 027158            3 CQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGL--------------------WAEAEKAYSSLLEDNP-   55 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~l~~~p-   55 (227)
                      .|.|++|+.+..+-++...      ...++++.+|.+|...|+                    ++.|.++|..-+++.. 
T Consensus       108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~  187 (639)
T KOG1130|consen  108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK  187 (639)
T ss_pred             hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999988877666432      356788999999987753                    4455666665555422 


Q ss_pred             -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--
Q 027158           56 -----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--  122 (227)
Q Consensus        56 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--  122 (227)
                           ....++.++|..|+-.|+++.|+..-+.-+.+....      -.++.++|+++.-.|+++.|++.|+..+.+.  
T Consensus       188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie  267 (639)
T KOG1130|consen  188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE  267 (639)
T ss_pred             hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence                 124667888999999999999999998888775443      3488999999999999999999999887542  


Q ss_pred             --CC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-----CchhHHHhHHHHHHHHHhhhc
Q 027158          123 --PT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       123 --p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~  182 (227)
                        ..  .....+.+|..|....+   +++|+.++.+-+.+...     ...++.|.++.++..++...+
T Consensus       268 lg~r~vEAQscYSLgNtytll~e---~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k  333 (639)
T KOG1130|consen  268 LGNRTVEAQSCYSLGNTYTLLKE---VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK  333 (639)
T ss_pred             hcchhHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence              22  24467889999999999   99999999987765322     578999999999999887443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.07  E-value=1.4e-08  Score=75.41  Aligned_cols=98  Identities=17%  Similarity=0.186  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYAD  134 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~  134 (227)
                      .+..+.-++..|++..|...|...++..|++   +++++.||.+++.+|+|+.|...|..+++-.|++   |++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            3444555555555556666666665555554   4455556666666666666666666555555443   445566666


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +...+|+   .++|...|+++++.-|+
T Consensus       224 ~~~~l~~---~d~A~atl~qv~k~YP~  247 (262)
T COG1729         224 SLGRLGN---TDEACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHhcC---HHHHHHHHHHHHHHCCC
Confidence            6666665   66666666666665554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=5e-09  Score=74.06  Aligned_cols=96  Identities=14%  Similarity=0.061  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           63 RRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      .-|.-++..|++++|..-|..++.+.|..+     -.+.+.|.+.+.++.++.|+..+.++++++|.+..++.+.|.+|.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            334444455555555555555555544432     234444555555555555555555555555555555555555555


Q ss_pred             HcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          138 TLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       138 ~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++.+   +++|+..|+++++++|.
T Consensus       180 k~ek---~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  180 KMEK---YEEALEDYKKILESDPS  200 (271)
T ss_pred             hhhh---HHHHHHHHHHHHHhCcc
Confidence            5544   55555555555555553

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=9e-08  Score=77.68  Aligned_cols=167  Identities=16%  Similarity=0.057  Sum_probs=125.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      +.++|++|+.+    +..++.   .....+..+.|.++.++.++|+..++   ..++.+..+....|.+++++|+|++|.
T Consensus        58 q~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeal  130 (652)
T KOG2376|consen   58 QLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEAL  130 (652)
T ss_pred             hhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHH
Confidence            45678887743    444442   12223789999999999999999988   456777778889999999999999999


Q ss_pred             HHHHHHHHHc------------------------------CC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-----
Q 027158           79 EWLNKYLETF------------------------------MA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-----  122 (227)
Q Consensus        79 ~~~~~~l~~~------------------------------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----  122 (227)
                      ..|+..++-+                              |. +.+.+++.|-++...|+|.+|++.+++++.+.     
T Consensus       131 diY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~  210 (652)
T KOG2376|consen  131 DIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE  210 (652)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence            9999864322                              22 34578899999999999999999999995432     


Q ss_pred             --CCC--------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          123 --PTV--------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       123 --p~~--------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                        ..+        ..+...++.++..+|+   ..+|...|...++.+|. +..   .++++..++..+.+
T Consensus       211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gq---t~ea~~iy~~~i~~~~~-D~~---~~Av~~NNLva~~~  273 (652)
T KOG2376|consen  211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQ---TAEASSIYVDIIKRNPA-DEP---SLAVAVNNLVALSK  273 (652)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhcCC-Cch---HHHHHhcchhhhcc
Confidence              111        2378899999999999   99999999999999985 432   23445555554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=1e-08  Score=72.51  Aligned_cols=114  Identities=25%  Similarity=0.253  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  101 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  101 (227)
                      +-.-|+-++..|+|++|..-|..++...|..+     ..|.+.|.+++.++.++.|+..+.++++++|....+....|.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            44568889999999999999999999998753     5678899999999999999999999999999999999999999


Q ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158          102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus       102 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      |.....|++|+.-|.+.+..+|....+.-.++.+--...
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN  216 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence            999999999999999999999988777666655443333

>PLN03077 Protein ECB2; Provisional

Probab=99.05  E-value=2.2e-08  Score=88.66  Aligned_cols=166  Identities=11%  Similarity=0.100  Sum_probs=109.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      .|++++|...|+..    +.+...|..+...|...|+.++|+.+|+++.+.  .|+ ...+..+...+.+.|.+++|..+
T Consensus       537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~  611 (857)
T PLN03077        537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEY  611 (857)
T ss_pred             cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHH
Confidence            46677777777665    445667777777777778888888888777764  343 34455566667777788888888


Q ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           81 LNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        81 ~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      |+...+..+-  +...|..+..++.+.|++++|.+++++. ...|+ ..+|..+-..+...|+   .+.+....++++++
T Consensus       612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~---~e~~e~~a~~l~~l  686 (857)
T PLN03077        612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH---VELGELAAQHIFEL  686 (857)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhh
Confidence            8777744332  3456777777777888888887777764 23443 4555555566666677   77777777777777


Q ss_pred             cCCCchhHHHhHHHHHHHHHh
Q 027158          159 TGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      .|+ +...+..++-++...++
T Consensus       687 ~p~-~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        687 DPN-SVGYYILLCNLYADAGK  706 (857)
T ss_pred             CCC-CcchHHHHHHHHHHCCC
Confidence            775 55555555555544333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.05  E-value=7.6e-09  Score=76.84  Aligned_cols=105  Identities=21%  Similarity=0.193  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHH
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE  100 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~  100 (227)
                      .+..+.-+...|+|..|...|...++.+|++   +.+++-||.+++.+|++++|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6788889999999999999999999999986   5889999999999999999999999999998876   789999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPTVPLYHLA  131 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  131 (227)
                      +....|+.++|...|+++++..|..+.+...
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999998876544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.03  E-value=1.1e-07  Score=73.72  Aligned_cols=172  Identities=15%  Similarity=0.078  Sum_probs=99.9

Q ss_pred             CCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +|+++.|-.++.++.+.-+ +...+....+......|++..|..-..+++...|.++.+......+|...|++.....++
T Consensus       131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l  210 (400)
T COG3071         131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAIL  210 (400)
T ss_pred             cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHH
Confidence            3455555555555555432 233344445555555555555555555555555555555555555555555554444444


Q ss_pred             HHHHHHc------------------------------------------CCCHHHHHHHHHHHHHcccHHHHHH------
Q 027158           82 NKYLETF------------------------------------------MADHDAWRELAEIYVSLQMYKQAAF------  113 (227)
Q Consensus        82 ~~~l~~~------------------------------------------p~~~~~~~~la~~~~~~~~~~~A~~------  113 (227)
                      .+.-+..                                          .+++.....++.-+...|+.++|.+      
T Consensus       211 ~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L  290 (400)
T COG3071         211 PKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL  290 (400)
T ss_pred             HHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3321110                                          1123333344444555555555544      


Q ss_pred             -------------------------HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHH
Q 027158          114 -------------------------CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  168 (227)
Q Consensus       114 -------------------------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~  168 (227)
                                               ..++.+...|++|..+..+|..+++.+.   |.+|..+|+.+++..|+  ...+.
T Consensus       291 k~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~s--~~~~~  365 (400)
T COG3071         291 KRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAALKLRPS--ASDYA  365 (400)
T ss_pred             HhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHHhcCCC--hhhHH
Confidence                                     4445555577888899999999999999   99999999999999885  44445


Q ss_pred             hHHHHHHHHHh
Q 027158          169 GICLCSSAIAQ  179 (227)
Q Consensus       169 ~l~~~~~~~~~  179 (227)
                      -++.++..+++
T Consensus       366 ~la~~~~~~g~  376 (400)
T COG3071         366 ELADALDQLGE  376 (400)
T ss_pred             HHHHHHHHcCC
Confidence            56666666664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.03  E-value=1e-07  Score=66.78  Aligned_cols=128  Identities=22%  Similarity=0.189  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CHHHHHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLE-DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIY  102 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~  102 (227)
                      -.+.+|......|++.+|..+|++++. ...+++..+..++...+..+++..|...+++..+.+|.  +++....+|..+
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            345667777777777778777777776 35566777777777777777777777777777777765  366677777777


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          103 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       103 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ...|.+.+|...|+.++...|. +.+...++..+.++|+   ..+|...+..+.+
T Consensus       171 aa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr---~~ea~aq~~~v~d  221 (251)
T COG4700         171 AAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR---LREANAQYVAVVD  221 (251)
T ss_pred             HhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc---hhHHHHHHHHHHH
Confidence            7777777777777777777764 5666667777777776   6666555544443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.03  E-value=6.3e-09  Score=70.23  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=84.2

Q ss_pred             CCCCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC-
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGN-   73 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~-   73 (227)
                      |+.|+|.+|++.|+.+...+|.   ...+...++.+++..+++++|+..+++.++++|+++   .+++..|.+++.+.. 
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~  100 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG  100 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence            4679999999999999999984   457889999999999999999999999999999875   778899998888776 


Q ss_pred             --------------hHHHHHHHHHHHHHcCCCHHH
Q 027158           74 --------------FPTAIEWLNKYLETFMADHDA   94 (227)
Q Consensus        74 --------------~~~A~~~~~~~l~~~p~~~~~   94 (227)
                                    ...|...|++.+...|++..+
T Consensus       101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                          889999999999999998654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.02  E-value=2.1e-07  Score=68.69  Aligned_cols=153  Identities=16%  Similarity=0.201  Sum_probs=125.3

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH---HHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWR   96 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~   96 (227)
                      .+..++..|...++.|+|++|+..|+.+...+|.++   .+...++..+...+++++|+..+++.+.++|.+++   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            456788999999999999999999999999988765   77889999999999999999999999999998854   667


Q ss_pred             HHHHHHHHc--------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCCCCcHHHHHHH
Q 027158           97 ELAEIYVSL--------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILLAKKY  151 (227)
Q Consensus        97 ~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~A~~~  151 (227)
                      ..|.+++..        .-...|+..|+..+...|++..                 --..+|..|.+.|.   +..|+..
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~---~~AA~nR  189 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA---YVAAINR  189 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHHH
Confidence            777776654        3357889999999999998743                 23567788889999   9999999


Q ss_pred             HHHHhhhcCC--CchhHHHhHHHHHHHHH
Q 027158          152 YASTIDLTGG--KNTKALFGICLCSSAIA  178 (227)
Q Consensus       152 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~  178 (227)
                      ++.+++.-|+  ....++..+..++..++
T Consensus       190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lg  218 (254)
T COG4105         190 FEEVLENYPDTSAVREALARLEEAYYALG  218 (254)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHhC
Confidence            9999998775  23445556666666655

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.01  E-value=1.1e-08  Score=71.34  Aligned_cols=95  Identities=21%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc--
Q 027158           40 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM--  107 (227)
Q Consensus        40 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--  107 (227)
                      ++.|.+.++.....+|.+++.+++.|.++..+.+          +++|+.-|++++.++|+..++++.+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5667777777777788888777777776665432          4567777888888888888888888888877643  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158          108 ---------YKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus       108 ---------~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                               |++|..+|++|...+|++..++..|..
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                     777888888888888887766555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.01  E-value=2.9e-09  Score=81.17  Aligned_cols=109  Identities=20%  Similarity=0.132  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      .-..|+.|+.+|+|++|+.+|.+++..+|.++..+.+++..|+++.++..|...++.++.++.....+|...+.+-...|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34568889999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158          107 MYKQAAFCYEELILSQPTVPLYHLAYADV  135 (227)
Q Consensus       107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~  135 (227)
                      +..+|-.-++.++.+.|++....-.++.+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            99999999999999999877665555443

>PLN03077 Protein ECB2; Provisional

Probab=98.98  E-value=5.8e-08  Score=86.02  Aligned_cols=151  Identities=11%  Similarity=0.052  Sum_probs=128.3

Q ss_pred             CCCChHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTA   77 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A   77 (227)
                      ..|+.++|+.+|+++....  |+. ..+..+-..+...|.+++|..+|+.+.+..+  .+...|..+..++.+.|++++|
T Consensus       566 ~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA  644 (857)
T PLN03077        566 AHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA  644 (857)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence            3689999999999998754  444 4455555678889999999999999985433  2457889999999999999999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ...+++. ...| ++..|..|-..+...|+.+.+....++++++.|++...+..++.+|...|+   +++|....+...+
T Consensus       645 ~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~---~~~a~~vr~~M~~  719 (857)
T PLN03077        645 YNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK---WDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC---hHHHHHHHHHHHH
Confidence            9999985 2444 477898888899999999999999999999999999999999999999999   9999999888765


Q ss_pred             h
Q 027158          158 L  158 (227)
Q Consensus       158 ~  158 (227)
                      .
T Consensus       720 ~  720 (857)
T PLN03077        720 N  720 (857)
T ss_pred             c
Confidence            4

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.97  E-value=5.1e-09  Score=83.17  Aligned_cols=69  Identities=14%  Similarity=-0.002  Sum_probs=60.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA---WRELAEIYVSLQMYKQAAFCYEELILSQ  122 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~  122 (227)
                      +|+++.+++++|..+...|++++|+..|+++++++|+++.+   |+++|.+|..+|++++|+.++++++.+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            67888899999999999999999999999999999998854   8999999999999999999999998873

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.96  E-value=5.6e-09  Score=82.95  Aligned_cols=70  Identities=17%  Similarity=0.096  Sum_probs=65.5

Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 027158           19 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL---HKRRVAIAKAQGNFPTAIEWLNKYLETF   88 (227)
Q Consensus        19 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~l~~~   88 (227)
                      .+|+++..++.+|..+...|++++|+..|+++++++|++..+   |+++|.+|..+|+.++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            467889999999999999999999999999999999999854   9999999999999999999999999973

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=2.3e-07  Score=73.80  Aligned_cols=155  Identities=15%  Similarity=0.175  Sum_probs=140.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +++++..|.+++++++..+..+...|.-.+.+-+.......|..++++++..-|.-...|+....+--.+|+...|.+.|
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif  164 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF  164 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++.++..|+ ..+|......-.+.+.++.|...|++.+-.+|+ ...|...|..-.+.|+   ...|...|..+++.-.+
T Consensus       165 erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~---~~~aR~VyerAie~~~~  239 (677)
T KOG1915|consen  165 ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN---VALARSVYERAIEFLGD  239 (677)
T ss_pred             HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHhhh
Confidence            999999985 678888888888889999999999999988875 6678888888888998   88888888888876554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.93  E-value=5e-07  Score=66.44  Aligned_cols=168  Identities=22%  Similarity=0.221  Sum_probs=122.8

Q ss_pred             CCChHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCChHHHHH
Q 027158            3 CQCLDVAKDCIKVLQK--QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA-IAKAQGNFPTAIE   79 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~   79 (227)
                      .+.+..+...+.....  ..+.....+...+......+++..++..+..++...+.........+. ++...|+++.|..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (291)
T COG0457          72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE  151 (291)
T ss_pred             cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence            4566777777777776  566777777788888888888888888888888877766555555555 7788888888888


Q ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           80 WLNKYLETFM---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        80 ~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      .+.+++...|   .........+..+...++++.|+..+.+++...+. ....+..++..+...+.   +..|...+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~  228 (291)
T COG0457         152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK---YEEALEYYEKA  228 (291)
T ss_pred             HHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc---HHHHHHHHHHH
Confidence            8888877666   34556666666677778888888888888888887 67778888888888887   88888888888


Q ss_pred             hhhcCCCchhHHHhHHHHH
Q 027158          156 IDLTGGKNTKALFGICLCS  174 (227)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~  174 (227)
                      +...|. ....+.......
T Consensus       229 ~~~~~~-~~~~~~~~~~~~  246 (291)
T COG0457         229 LELDPD-NAEALYNLALLL  246 (291)
T ss_pred             HhhCcc-cHHHHhhHHHHH
Confidence            888774 333333333333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.93  E-value=9.2e-07  Score=64.99  Aligned_cols=168  Identities=22%  Similarity=0.144  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHhCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPE--SKRVGRLEGILLEAKGLWAEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +..+...+.......+.  ........+..+...+++..+...+...+.  ..+.....+...+......+++..++..+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (291)
T COG0457          39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL  118 (291)
T ss_pred             HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44455555555555554  255556666666666666666666666665  45556666666666666666666666666


Q ss_pred             HHHHHHcCCCHHHHHHHHH-HHHHcccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           82 NKYLETFMADHDAWRELAE-IYVSLQMYKQAAFCYEELILSQP---TVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ..++...+.+.......+. ++...|+++.|...+.+++...|   .........+..+...++   +..|+..+.+++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~  195 (291)
T COG0457         119 EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR---YEEALELLEKALK  195 (291)
T ss_pred             HHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC---HHHHHHHHHHHHh
Confidence            6666666655444444444 56666666666666666666554   234444555555556666   6666666666666


Q ss_pred             hcCCCchhHHHhHHHHHHH
Q 027158          158 LTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~~  176 (227)
                      ..+......+..+..++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~  214 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLK  214 (291)
T ss_pred             hCcccchHHHHHhhHHHHH
Confidence            6653123444444444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.92  E-value=1.5e-08  Score=72.66  Aligned_cols=104  Identities=22%  Similarity=0.147  Sum_probs=65.1

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      ...++..|..|-..|-+.-|.--|.+++.+.|..+.+++.+|..+...|+++.|.+.|...++++|....+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            34455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHH
Q 027158          104 SLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      --|+|.-|.+-+.+-.+.+|++|.
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChH
Confidence            666666666666666666666553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.92  E-value=8.6e-09  Score=78.66  Aligned_cols=98  Identities=18%  Similarity=0.094  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      ....|+-|+.+|.|++|+.+|.+++..+|.++..+.+.|.+|++...|..|..-+..|+.++.....++.+.+.+-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhhhcCC
Q 027158          141 GVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .   ..+|.+.++.++.+.|.
T Consensus       180 ~---~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  180 N---NMEAKKDCETVLALEPK  197 (536)
T ss_pred             h---HHHHHHhHHHHHhhCcc
Confidence            9   99999999999999996

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.91  E-value=6.1e-07  Score=63.02  Aligned_cols=138  Identities=20%  Similarity=0.194  Sum_probs=114.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHcccHHHH
Q 027158           33 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-TFMADHDAWRELAEIYVSLQMYKQA  111 (227)
Q Consensus        33 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A  111 (227)
                      ...+.=+.+....-..+.+...|+.. -.+.++......|++.+|...|++++. ++.+++.....++...+..+++..|
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a  143 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA  143 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence            33444556666666666666666544 356899999999999999999999986 5778899999999999999999999


Q ss_pred             HHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHH
Q 027158          112 AFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  174 (227)
Q Consensus       112 ~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (227)
                      ...+++..+.+|.  .+..+..+|..+...|.   +..|...|+.+++--|+...+.+|+.-+..
T Consensus       144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~---~a~Aesafe~a~~~ypg~~ar~~Y~e~La~  205 (251)
T COG4700         144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK---YADAESAFEVAISYYPGPQARIYYAEMLAK  205 (251)
T ss_pred             HHHHHHHhhcCCccCCCCchHHHHHHHHhcCC---chhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9999999999884  57788999999999999   999999999999999986677777654443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=1.2e-07  Score=72.85  Aligned_cols=141  Identities=14%  Similarity=0.004  Sum_probs=108.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158           34 LEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA  112 (227)
Q Consensus        34 ~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~  112 (227)
                      +....+|..|+.+++-.+..+.... ..-.-+|.|+++.|++++|...|.-+...+..++..|.+||-+++-.|.|.+|.
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence            4456899999999988877654433 445568999999999999999999999887778899999999999999999998


Q ss_pred             HHHHHHHh--------------hCC------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158          113 FCYEELIL--------------SQP------------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus       113 ~~~~~al~--------------~~p------------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                      ....++-+              ++.            +...-...+|.+++..-.   |++|+..|++++.-+|. ....
T Consensus       112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H---YQeAIdvYkrvL~dn~e-y~al  187 (557)
T KOG3785|consen  112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH---YQEAIDVYKRVLQDNPE-YIAL  187 (557)
T ss_pred             HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH---HHHHHHHHHHHHhcChh-hhhh
Confidence            77655421              111            111234566667777777   99999999999999995 5555


Q ss_pred             HHhHHHHHHHHH
Q 027158          167 LFGICLCSSAIA  178 (227)
Q Consensus       167 ~~~l~~~~~~~~  178 (227)
                      -..+++|+..+.
T Consensus       188 NVy~ALCyyKlD  199 (557)
T KOG3785|consen  188 NVYMALCYYKLD  199 (557)
T ss_pred             HHHHHHHHHhcc
Confidence            567788887654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.88  E-value=1.3e-07  Score=80.06  Aligned_cols=136  Identities=17%  Similarity=0.166  Sum_probs=118.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      +|.+++.+|+....+++.++|+.+.+....|..+.+.|+.++|..+++..-...+++...+-.+-.+|..+|+.++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            47789999999999999999999999999999999999999999888888888889889999999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      |++++..+|+ ......+-.+|.+.+.|.+-...--+..+..|.++.+++....+..
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence            9999999999 8888999999999998877666655666677877765555444433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.88  E-value=5.2e-09  Score=64.45  Aligned_cols=62  Identities=18%  Similarity=0.271  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHc---C----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETF---M----ADHDAWRELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      .++..+|.++...|++++|+.+|++++++.   +    ..+.++.++|.++...|++++|+.+++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            444455555555555555555555554431   1    1123444555555555555555555555543

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.85  E-value=2.6e-07  Score=71.10  Aligned_cols=133  Identities=15%  Similarity=0.100  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  104 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  104 (227)
                      +|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|...|+.+++.+|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            567777888888889999999999997777778999999999777 5666669999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          105 LQMYKQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       105 ~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .|+.+.|..+|++++..-|...   ..|......-...|+   .+......+++.+..|.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTT
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhh
Confidence            9999999999999998776654   578888888888999   99999999998888775

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.85  E-value=6.7e-08  Score=67.45  Aligned_cols=98  Identities=15%  Similarity=0.126  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC-
Q 027158           74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSL----------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV-  142 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-  142 (227)
                      ++.|.+.++.....+|.+++.+++-|.++..+          ..+++|+.-|++|+.++|+...+++.+|.++...+.. 
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            57789999999999999999998888887766          3467889999999999999999999999999988751 


Q ss_pred             -------CcHHHHHHHHHHHhhhcCCCchhHHHhHHH
Q 027158          143 -------DNILLAKKYYASTIDLTGGKNTKALFGICL  172 (227)
Q Consensus       143 -------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  172 (227)
                             ..|++|..+|+++++.+|+ +......+-+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~-ne~Y~ksLe~  122 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPN-NELYRKSLEM  122 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence                   3488999999999999996 5444434433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.83  E-value=4.3e-07  Score=60.01  Aligned_cols=98  Identities=11%  Similarity=-0.001  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHH
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----PLYHLAYADVL  136 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  136 (227)
                      +...|......|+.+.|++.|.+++.+-|..+.+|.+.+..+.-+|+.++|++-+++++++....    ..++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            34567777888999999999999999999999999999999999999999999999999876443    34688889999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          137 YTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ...|+   -+.|...|+.+.++.+.
T Consensus       126 Rl~g~---dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RLLGN---DDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHhCc---hHHHHHhHHHHHHhCCH
Confidence            99999   99999999999888764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.83  E-value=3.8e-07  Score=60.24  Aligned_cols=98  Identities=21%  Similarity=0.134  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHH
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIY  102 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~  102 (227)
                      +-..|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++....    ..+++..|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            45567788888999999999999999999999999999999999999999999999999987654    45788999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCC
Q 027158          103 VSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus       103 ~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      ...|+-+.|..-|+.+-++...
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCH
Confidence            9999999999999998876543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=2.6e-07  Score=68.25  Aligned_cols=134  Identities=16%  Similarity=0.094  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc----C--CCHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF----M--ADHDAWRE   97 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~----p--~~~~~~~~   97 (227)
                      .+.+.+..++.-.|+|.-....+.++++.+ |.++.....+|.+.++.|+.+.|..+|+++-+..    .  ..-....+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            455677888888999999999999999988 6778888999999999999999999999655432    2  22345667


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .+.++.-.+++.+|...|.+.+..+|.++.+..+.|.|+...|+   ...|++..+.++...|.
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~---l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK---LKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH---HHHHHHHHHHHhccCCc
Confidence            78888889999999999999999999999999999999999999   99999999999999997

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.80  E-value=2.7e-08  Score=77.73  Aligned_cols=177  Identities=16%  Similarity=0.090  Sum_probs=107.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHH------------------------------
Q 027158            3 CQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYS------------------------------   48 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~------------------------------   48 (227)
                      +|+....+.+|+.+++...++.    .++..+|+.|+-.++|.+|+++-.                              
T Consensus        30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G  109 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG  109 (639)
T ss_pred             ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence            5677777888888888776543    345567777777777777766532                              


Q ss_pred             ----------HHHhcC------CCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHcCCC-
Q 027158           49 ----------SLLEDN------PLDPVLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLETFMAD-   91 (227)
Q Consensus        49 ----------~~l~~~------p~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~l~~~p~~-   91 (227)
                                +-+...      -....+++++|.+|...|+                    ++.|.++|..-+++.... 
T Consensus       110 ~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg  189 (639)
T KOG1130|consen  110 AFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG  189 (639)
T ss_pred             ccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                      222110      0113455566666665542                    233344444433332221 


Q ss_pred             -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc-
Q 027158           92 -----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT-  159 (227)
Q Consensus        92 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~-  159 (227)
                           ..++.+||+.|+-.|+|+.|+..-+.-+.+....      -.++.++|.++.-+|+   ++.|+++|+..+.+. 
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~---fe~A~ehYK~tl~LAi  266 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN---FELAIEHYKLTLNLAI  266 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc---cHhHHHHHHHHHHHHH
Confidence                 2356677777778888888887777666554322      3478889999999999   999999998876542 


Q ss_pred             ---CC-CchhHHHhHHHHHHHHHhhhc
Q 027158          160 ---GG-KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       160 ---~~-~~~~~~~~l~~~~~~~~~~~~  182 (227)
                         .. .....-|.++-.+.-+.++.+
T Consensus       267 elg~r~vEAQscYSLgNtytll~e~~k  293 (639)
T KOG1130|consen  267 ELGNRTVEAQSCYSLGNTYTLLKEVQK  293 (639)
T ss_pred             HhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence               21 234455566666666665554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.79  E-value=1.3e-06  Score=67.91  Aligned_cols=130  Identities=17%  Similarity=0.070  Sum_probs=111.6

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  101 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  101 (227)
                      +++.+....+.-+...|+.++|.+....+++...+..  +..+ .-....++...-++..++++...|+++..+..||..
T Consensus       261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L  337 (400)
T COG3071         261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL  337 (400)
T ss_pred             cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            5677888888999999999999999999999765443  1111 223456788889999999999999999999999999


Q ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       102 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      +++.+.|.+|..+|+.++...|. ...+..+|.++...|+   ..+|...+++++..
T Consensus       338 ~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~---~~~A~~~r~e~L~~  390 (400)
T COG3071         338 ALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE---PEEAEQVRREALLL  390 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence            99999999999999999998875 4557889999999999   99999999999854

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.77  E-value=1.2e-08  Score=62.80  Aligned_cols=68  Identities=24%  Similarity=0.336  Sum_probs=57.8

Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC----CCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           89 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----PTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        89 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      |+-..++.++|.+|...|+|++|+.+|++++.+.    +++   ..++.++|.++..+|+   +++|+.++++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhh
Confidence            4456789999999999999999999999999652    222   4579999999999999   999999999999864

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=2.6e-06  Score=63.09  Aligned_cols=145  Identities=21%  Similarity=0.163  Sum_probs=120.1

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      ......-|.++...|++++|.......     .+.++...-..++.+..+++-|...+++..+++.+  .....||..+.
T Consensus       108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv  180 (299)
T KOG3081|consen  108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWV  180 (299)
T ss_pred             HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHH
Confidence            345566678999999999999877662     34556666667888999999999999999887744  45555666655


Q ss_pred             Hc----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          104 SL----QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       104 ~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      ..    +++..|..+|++.-...|..+......|.++..+|+   +++|...++.++..+++ ++.++.+++.+....+.
T Consensus       181 ~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  181 KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAK-DPETLANLIVLALHLGK  256 (299)
T ss_pred             HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence            43    579999999999988788889999999999999999   99999999999999996 99999999999988875

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.4e-07  Score=68.54  Aligned_cols=93  Identities=14%  Similarity=-0.007  Sum_probs=87.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccH
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  108 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~  108 (227)
                      ..|+.++....|+.|+..|.+++..+|..+..|.+.+.|++...+++.+.....++++++|+...+++.+|.+......|
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            45677788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027158          109 KQAAFCYEELILS  121 (227)
Q Consensus       109 ~~A~~~~~~al~~  121 (227)
                      ++|+..++++..+
T Consensus        95 ~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   95 DEAIKVLQRAYSL  107 (284)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999999643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.68  E-value=4.1e-06  Score=74.36  Aligned_cols=157  Identities=13%  Similarity=0.096  Sum_probs=104.0

Q ss_pred             CCCCChHHHHHHHHHHHHhC-C----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 027158            1 MDCQCLDVAKDCIKVLQKQF-P----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP   75 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~-p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~   75 (227)
                      |+.++.++|.+++++++... +    .-..+|..+-+....-|.-+...+.|+++.+.. +-..++..|..+|...+.++
T Consensus      1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred             hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcch
Confidence            34567778888888877653 3    223445555555555565666666677766643 22345666667777777777


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158           76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYA  153 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~  153 (227)
                      +|.++|+..++.+.+....|..+|..++++++-+.|...+.+|++.-|.  +.......|...++.|+   .+.+...|+
T Consensus      1548 ~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD---aeRGRtlfE 1624 (1710)
T KOG1070|consen 1548 EADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD---AERGRTLFE 1624 (1710)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC---chhhHHHHH
Confidence            7777777777777666777777777777777777777777777777665  55666667777777777   677777777


Q ss_pred             HHhhhcCC
Q 027158          154 STIDLTGG  161 (227)
Q Consensus       154 ~~~~~~~~  161 (227)
                      ..+.-.|.
T Consensus      1625 gll~ayPK 1632 (1710)
T KOG1070|consen 1625 GLLSAYPK 1632 (1710)
T ss_pred             HHHhhCcc
Confidence            77766664

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.67  E-value=2.3e-06  Score=75.86  Aligned_cols=152  Identities=12%  Similarity=0.015  Sum_probs=124.1

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLD----PVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~----~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      -.+..+-|++++.-+|++.-.|+.......+.++.+.|.+..++++.. ++..    ..+|..+-++...-|.-+...+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            344566788888889999989988888888899999999999999885 4433    25566666666666777778888


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      |+++.+.. +....+..|..+|...+++++|.++++..++...+....|..+|..++..++   -+.|...+.+|++.-|
T Consensus      1520 FeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne---~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1520 FERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE---AEAARELLKRALKSLP 1595 (1710)
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH---HHHHHHHHHHHHhhcc
Confidence            88888765 3356788889999999999999999999998888888899999999999988   8999999999999888


Q ss_pred             C
Q 027158          161 G  161 (227)
Q Consensus       161 ~  161 (227)
                      .
T Consensus      1596 k 1596 (1710)
T KOG1070|consen 1596 K 1596 (1710)
T ss_pred             h
Confidence            6

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.65  E-value=6.2e-06  Score=73.74  Aligned_cols=154  Identities=12%  Similarity=0.067  Sum_probs=102.7

Q ss_pred             CCChHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPE---------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIA   68 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~   68 (227)
                      .|++++|...+..+....+.         ...+...++.++...|++++|...+++++...|...     .+...+|.++
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            46777777777776654321         123344566777778888888888888877544321     3455677777


Q ss_pred             HHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--------CHHHHHHHHH
Q 027158           69 KAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--------VPLYHLAYAD  134 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~  134 (227)
                      ...|++++|...+++++......      ..++..+|.++...|+++.|...+++++.....        ....+..+|.
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  581 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ  581 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            78888888888888877654321      234566777888888888888888887764211        1233456677


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      +++..|+   +++|...+.+++...
T Consensus       582 ~~~~~G~---~~~A~~~~~~al~~~  603 (903)
T PRK04841        582 LLWEWAR---LDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHhcC---HHHHHHHHHHhHHhh
Confidence            7778888   888888888777653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.64  E-value=9.2e-08  Score=51.80  Aligned_cols=40  Identities=28%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      +|..+|.+|...|++++|+.+|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4445555555555555555555555555555555554444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.63  E-value=5.7e-06  Score=73.97  Aligned_cols=156  Identities=15%  Similarity=0.059  Sum_probs=123.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKA   70 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~   70 (227)
                      ..|++++|...+++++...|...     .+...+|.++...|++++|...+.+++......      ..++..++.++..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            36899999999999988655322     345678888999999999999999998763321      2456778999999


Q ss_pred             cCChHHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH
Q 027158           71 QGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-----VPLYHLAYADVLY  137 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~  137 (227)
                      .|++++|...+++++.....        ....+..+|.++...|++++|...+++++.....     ...++..+|.++.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            99999999999999886322        1234567899999999999999999999875321     2446677899999


Q ss_pred             HcCCCCcHHHHHHHHHHHhhhcC
Q 027158          138 TLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       138 ~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ..|+   ++.|...+.++..+.+
T Consensus       624 ~~G~---~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        624 ARGD---LDNARRYLNRLENLLG  643 (903)
T ss_pred             HcCC---HHHHHHHHHHHHHHHh
Confidence            9999   9999999999977643

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.62  E-value=1.4e-07  Score=51.10  Aligned_cols=42  Identities=24%  Similarity=0.226  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      .++..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            455666666666677777777777777667766666666654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=3e-06  Score=63.97  Aligned_cols=143  Identities=15%  Similarity=0.061  Sum_probs=119.0

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  114 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~  114 (227)
                      ....+|..|++++..-.+..|.+...+..+|.||....++..|..+|++.-...|.........+..++..+.+..|+..
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            56688999999999999999999999999999999999999999999999999999888777777877777777777655


Q ss_pred             HHHHHh------------------------------hCC--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158          115 YEELIL------------------------------SQP--TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus       115 ~~~al~------------------------------~~p--~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      ......                              .-|  ++.....+.|.+.++.|+   ++.|+.-|+.+++... .
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvsG-y  176 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVSG-Y  176 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecccc---HHHHHHHHHHHHhhcC-C
Confidence            433221                              123  345578888999999999   9999999999999876 5


Q ss_pred             chhHHHhHHHHHHHHHhhh
Q 027158          163 NTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~~~  181 (227)
                      ++-..|++++|+.+-++..
T Consensus       177 qpllAYniALaHy~~~qya  195 (459)
T KOG4340|consen  177 QPLLAYNLALAHYSSRQYA  195 (459)
T ss_pred             CchhHHHHHHHHHhhhhHH
Confidence            8888899999988766533

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=5.9e-05  Score=55.10  Aligned_cols=127  Identities=19%  Similarity=0.116  Sum_probs=90.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC----C-CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH------HHHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDN----P-LD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD------AWREL   98 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~----p-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l   98 (227)
                      |+.|...++|..|-..|-++-...    . .+ ...|..-+.+|.+ +++.+|+.+++++++++.+-..      .+..+
T Consensus        41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i  119 (288)
T KOG1586|consen   41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI  119 (288)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence            445555566666666666665431    1 12 2445455555554 4899999999999999866533      45689


Q ss_pred             HHHHHHc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           99 AEIYVSL-QMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        99 a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      |.+|... .++++|+.+|+++-......      ...+...|..-..+++   |.+|+..|+++....-+
T Consensus       120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq---Y~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ---YSKAIDIYEQVARSSLD  186 (288)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence            9999876 99999999999998655432      2356677777778888   99999999999876554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.1e-05  Score=59.94  Aligned_cols=149  Identities=13%  Similarity=-0.019  Sum_probs=119.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAI   78 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~   78 (227)
                      -|++++|+.....     ..+.++..+-..++.+..+.+-|...++++...+.+  ..+..++..+..    .+...+|.
T Consensus       121 ~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAf  193 (299)
T KOG3081|consen  121 DGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAF  193 (299)
T ss_pred             CCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHH
Confidence            4677777765544     335566677778999999999999999999877643  444556655544    34688999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhh
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK-YYASTID  157 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~-~~~~~~~  157 (227)
                      -+|+..-+..|..+......+.+.+.+|+|++|...++.++..+++++.++.++-.+-...|.   -.++.. ...+...
T Consensus       194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk---d~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK---DAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHh
Confidence            999999998888999999999999999999999999999999999999999999999999998   555544 4455555


Q ss_pred             hcCC
Q 027158          158 LTGG  161 (227)
Q Consensus       158 ~~~~  161 (227)
                      ..|.
T Consensus       271 ~~p~  274 (299)
T KOG3081|consen  271 SHPE  274 (299)
T ss_pred             cCCc
Confidence            5664

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=0.00011  Score=53.67  Aligned_cols=171  Identities=18%  Similarity=0.083  Sum_probs=117.0

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHc-CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHH
Q 027158           36 AKGLWAEAEKAYSSLLEDNPLDPVL------HKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIY  102 (227)
Q Consensus        36 ~~~~~~~A~~~~~~~l~~~p~~~~~------~~~l~~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~  102 (227)
                      +.+++.+|+.++++++++..+-...      +..+|.+|-.. .++++|+.+|+++-+.....      ...+...+...
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya  164 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA  164 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence            3457888888888888875544332      34677777655 88999999999998876543      23566677777


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-CchhHHHhHHHHH
Q 027158          103 VSLQMYKQAAFCYEELILSQPTVPL-------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCS  174 (227)
Q Consensus       103 ~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~  174 (227)
                      ...++|.+|+..|++.....-+++.       .++.-|.|+.-.++   .-.+...+++..+++|. .+.|...-+....
T Consensus       165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP~F~dsREckflk~L~  241 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDPAFTDSRECKFLKDLL  241 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence            8889999999999999987766643       45666777777788   88888888888999997 4455544444444


Q ss_pred             HHHHhhhcC----CCccccchHHHHHHHHHHHHHHHHhh
Q 027158          175 SAIAQLTKG----RNKEDKESPELQSLAAAALEKDYKQR  209 (227)
Q Consensus       175 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~  209 (227)
                      ..+......    .-++-.....+..|....|.++-+..
T Consensus       242 ~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~si  280 (288)
T KOG1586|consen  242 DAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSI  280 (288)
T ss_pred             HHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence            443321110    00111235677788888887776644

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.54  E-value=1.9e-05  Score=67.40  Aligned_cols=136  Identities=12%  Similarity=0.003  Sum_probs=110.1

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  114 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~  114 (227)
                      ...+++.+|.....+.++..|+...+...-|..+.++|+.++|..+++..-...+++....-.+-.+|..+|++++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            34588999999999999999999999999999999999999999888887777888888999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHH
Q 027158          115 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  175 (227)
Q Consensus       115 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (227)
                      |++++..+|. ......+=.+|.+.+.   |.+-...--+.-+..|. ++..+|..+....
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk-~~yyfWsV~Slil  155 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPK-RAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCc-ccchHHHHHHHHH
Confidence            9999999999 7777777777777777   65444333334446664 5444444444443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=3.2e-07  Score=66.71  Aligned_cols=95  Identities=13%  Similarity=0.039  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      +..-|..++...+++.|+.+|-+++.++|..+..|.+.+.++++..+|+.+..-+.+++++.|+....++.+|.++....
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            34556677777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhhh
Q 027158          141 GVDNILLAKKYYASTIDL  158 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~  158 (227)
                      .   +++|+..+.++.++
T Consensus        93 ~---~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   93 G---YDEAIKVLQRAYSL  107 (284)
T ss_pred             c---ccHHHHHHHHHHHH
Confidence            9   99999999999665

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.53  E-value=2e-07  Score=74.17  Aligned_cols=108  Identities=17%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158           30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  109 (227)
Q Consensus        30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~  109 (227)
                      .+...+..++++.|+..|.++++++|+.+..+-+.+..+...+++..|+..+.++++.+|....+|+..|...+..+++.
T Consensus        10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~   89 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK   89 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence            45566667889999999999999999999888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158          110 QAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus       110 ~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      +|...|+....+.|+++.+...+..|-.
T Consensus        90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   90 KALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            9999999999999999888777766544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.52  E-value=1.3e-05  Score=64.60  Aligned_cols=165  Identities=15%  Similarity=0.099  Sum_probs=116.6

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC----------------CC--H
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-------NP----------------LD--P   58 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------~p----------------~~--~   58 (227)
                      .+...-++...++++.+|+.+.++..++.-..  .-..+|..+|+++++.       ..                .+  .
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~  259 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV  259 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence            35566778889999999999999988875322  2345566666665553       10                00  3


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVPLYHLAYADV  135 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~  135 (227)
                      .+...++.|..+.|+.++|++.++..++.+|.  +..+..+|..++...+.|.++..++.+.=.+ -|......+.-|..
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            45568899999999999999999999998886  4668999999999999999999998885333 25555555555544


Q ss_pred             HHH-cCC---------CC---cHHHHHHHHHHHhhhcCCCchhHHHhHH
Q 027158          136 LYT-LGG---------VD---NILLAKKYYASTIDLTGGKNTKALFGIC  171 (227)
Q Consensus       136 ~~~-~g~---------~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~  171 (227)
                      -.+ .|+         .+   -...|.+.+.++++.+| +.+..+.++.
T Consensus       340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP-HVp~YLLe~K  387 (539)
T PF04184_consen  340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP-HVPKYLLEMK  387 (539)
T ss_pred             HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC-CCchhhhccC
Confidence            332 111         00   12457889999999999 4776665443

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.52  E-value=5.9e-06  Score=63.63  Aligned_cols=124  Identities=11%  Similarity=0.070  Sum_probs=103.8

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      ..+.|..+|.++....+-...++...|.+... .++.+.|..+|+.+++..|.+...|......+...|+.+.|...|++
T Consensus        16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer   95 (280)
T PF05843_consen   16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER   95 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            36789999999986555678899999998777 56667799999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           84 YLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        84 ~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      ++..-|...   ..|......-...|+.+....+.+++.+..|.+...
T Consensus        96 ~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen   96 AISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence            998877654   688888899999999999999999999999885544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.50  E-value=1.5e-07  Score=47.78  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=17.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAA  112 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~  112 (227)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555553

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=7.5e-06  Score=60.08  Aligned_cols=101  Identities=9%  Similarity=-0.018  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------cCCC----------HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMAD----------HDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      ..++...|+-++..|++.+|...|+.++-.        .|.+          ...+.+.++|+...|+|-++++.+...+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            456778899999999999999999987643        3444          3467899999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       120 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..+|.+..+++..|.++...-+   ..+|...|.++++++|.
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPS  296 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChh
Confidence            9999999999999999999999   99999999999999996

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=1.2e-05  Score=61.72  Aligned_cols=151  Identities=12%  Similarity=-0.112  Sum_probs=119.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCChHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLD---PVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      .|+..+|....+++++.+|.+.-++...-..++..|+...-...+++++.. +|+.   ..+...++..+...|-+++|.
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE  195 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE  195 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence            467778888899999999988888888888888889999888889998887 6666   455566777888889999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      +.-.++++++|.+.-+...++.++...|++.++.++..+.-..-....    .-+...|.++...+.   ++.|++.|.+
T Consensus       196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~aleIyD~  272 (491)
T KOG2610|consen  196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEKALEIYDR  272 (491)
T ss_pred             HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhHHHHHHHH
Confidence            999999999999999989999999999999999888766432211111    124455777777788   9999998876


Q ss_pred             Hh
Q 027158          155 TI  156 (227)
Q Consensus       155 ~~  156 (227)
                      -+
T Consensus       273 ei  274 (491)
T KOG2610|consen  273 EI  274 (491)
T ss_pred             HH
Confidence            54

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.3e-05  Score=59.21  Aligned_cols=129  Identities=18%  Similarity=0.048  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-HH---HHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-HD---AWRELAEI  101 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~---~~~~la~~  101 (227)
                      .-+..+......|++.+|...+..++...|.+..+...++.++...|+.+.|...+...-...... ..   ++..+..-
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q  215 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ  215 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            344555566666777777777777777777777777777777777777777666665532111111 00   11122222


Q ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       102 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ....++..    .+++.+..+|++..+.+.+|..+...|+   .+.|.+.+-..+..+.+
T Consensus       216 aa~~~~~~----~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         216 AAATPEIQ----DLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRG  268 (304)
T ss_pred             HhcCCCHH----HHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence            22222222    2344455667777777777777777777   77777776666666543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=6.3e-06  Score=61.13  Aligned_cols=124  Identities=16%  Similarity=0.101  Sum_probs=108.4

Q ss_pred             CCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHcCChH
Q 027158            3 CQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----N--PLDPVLHKRRVAIAKAQGNFP   75 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~--p~~~~~~~~l~~~~~~~~~~~   75 (227)
                      .|.|.-+...+.+++..+| ..+.....+|.+.++.|+.+.|..+++++-+.    +  ....-+..+.+.++.-.+++.
T Consensus       190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a  269 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA  269 (366)
T ss_pred             chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence            5778889999999999994 68888889999999999999999999965443    2  223455667778888899999


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 027158           76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  126 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  126 (227)
                      .|...+.+++..+|.++.+..+.|.|.+-.|+...|++..+.++...|...
T Consensus       270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999999999999999999999653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.45  E-value=2.8e-05  Score=64.15  Aligned_cols=154  Identities=18%  Similarity=0.114  Sum_probs=110.7

Q ss_pred             CCChHHHHHHHHHHHHhCC-CchhhH-HHHHHH-----H--H--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 027158            3 CQCLDVAKDCIKVLQKQFP-ESKRVG-RLEGIL-----L--E--AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ   71 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p-~~~~~~-~~~a~~-----~--~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~   71 (227)
                      .|+-+.++..+.++.+-.. ..+-+- ..++..     +  .  .....+.|.+.+.......|+..-.....|.++...
T Consensus       201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~  280 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK  280 (468)
T ss_pred             CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            3677788888888766221 222221 111110     1  1  245677899999999999999988888999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcH-
Q 027158           72 GNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNI-  145 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~-  145 (227)
                      |+.++|+..|++++.....-    .-.++.+|.++..+++|++|..+|.+..+.+.- ...+.+..|.++...|+   . 
T Consensus       281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~---~~  357 (468)
T PF10300_consen  281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR---EE  357 (468)
T ss_pred             cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc---ch
Confidence            99999999999887433222    346788999999999999999999998886553 34566777888888888   6 


Q ss_pred             ------HHHHHHHHHHhhhc
Q 027158          146 ------LLAKKYYASTIDLT  159 (227)
Q Consensus       146 ------~~A~~~~~~~~~~~  159 (227)
                            ++|...|.++-...
T Consensus       358 ~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  358 EAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             hhhhhHHHHHHHHHHHHHHH
Confidence                  77777777766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.44  E-value=1.8e-05  Score=61.41  Aligned_cols=155  Identities=16%  Similarity=0.121  Sum_probs=125.6

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------   91 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------   91 (227)
                      .+...+|..+...+.++++++.|+.+++..-  ++    ..++..+|..+-...++++|.-+..++.++-.+-       
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            4566788889999999999999999998732  22    2567889999999999999999999998874322       


Q ss_pred             ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-
Q 027158           92 ---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-  161 (227)
Q Consensus        92 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-  161 (227)
                         ..+.+.++..+...|..-.|.++++++.++.      |........+|++|...|+   .+.|..-|+++...... 
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd---~e~af~rYe~Am~~m~~~  279 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD---LERAFRRYEQAMGTMASL  279 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHHHHhhh
Confidence               3467889999999999999999999998764      3345678889999999999   99999999999876432 


Q ss_pred             ----CchhHHHhHHHHHHHHHhhhc
Q 027158          162 ----KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       162 ----~~~~~~~~l~~~~~~~~~~~~  182 (227)
                          ..+.++-+.+.|.....-..+
T Consensus       280 gdrmgqv~al~g~Akc~~~~r~~~k  304 (518)
T KOG1941|consen  280 GDRMGQVEALDGAAKCLETLRLQNK  304 (518)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhc
Confidence                457788888888888776554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.42  E-value=7.1e-05  Score=62.11  Aligned_cols=153  Identities=15%  Similarity=0.101  Sum_probs=101.5

Q ss_pred             CCChHHHHHHHHHHHHh-CC-----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcC
Q 027158            3 CQCLDVAKDCIKVLQKQ-FP-----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQG   72 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~-~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~   72 (227)
                      .|+..+-+..|..++.. +|     .....|...|..|...|+.+.|...|+++.+..-..    ..+|...|..-....
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            45667777777777754 55     234678888999999999999999999998864322    577888888888888


Q ss_pred             ChHHHHHHHHHHHHHcCC------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           73 NFPTAIEWLNKYLETFMA------------------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        73 ~~~~A~~~~~~~l~~~p~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                      +++.|..+.+++...-..                  +...|..+++.....|-++.....|++.+.+.--.|....+.|.
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm  519 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM  519 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            888888888887653211                  13356666666666677777777777766665555555555555


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      .+....-   +++|...|++.+.+
T Consensus       520 fLEeh~y---feesFk~YErgI~L  540 (835)
T KOG2047|consen  520 FLEEHKY---FEESFKAYERGISL  540 (835)
T ss_pred             HHHhhHH---HHHHHHHHHcCCcc
Confidence            5544433   33443333333333

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.41  E-value=8.5e-07  Score=70.69  Aligned_cols=115  Identities=16%  Similarity=0.057  Sum_probs=105.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           62 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        62 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ..-+.-.+..+.++.|+..|.++++++|+++..+.+.+.++...+++..|+.-+.+|++.+|....+++..|.+...++.
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            34556667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158          142 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  180 (227)
Q Consensus       142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (227)
                         +.+|...|+....+.|+ ++.+...+-.|...+.+.
T Consensus        88 ---~~~A~~~l~~~~~l~Pn-d~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   88 ---FKKALLDLEKVKKLAPN-DPDATRKIDECNKIVSEE  122 (476)
T ss_pred             ---HHHHHHHHHHhhhcCcC-cHHHHHHHHHHHHHHHHH
Confidence               99999999999999995 888888888888777663

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.40  E-value=1.6e-06  Score=69.37  Aligned_cols=133  Identities=15%  Similarity=0.066  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHcCChHHHH
Q 027158            8 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSL-LEDNPL--------DPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         8 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-l~~~p~--------~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      .+..-...++....+++......+..++..|++..|.+.+... +...|.        ...+|+++|-++++.|.+.-+.
T Consensus       224 ~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~  303 (696)
T KOG2471|consen  224 LAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASS  303 (696)
T ss_pred             HHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHH
Confidence            3444444555555678888999999999999999999877554 333343        2356789999999999999999


Q ss_pred             HHHHHHHHH---------c---------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           79 EWLNKYLET---------F---------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        79 ~~~~~~l~~---------~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      .+|.++++-         .         .......++.|..|...|++-.|.+||.+++...-.+|..|.++|.+.....
T Consensus       304 ~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  304 VLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL  383 (696)
T ss_pred             HHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            999999961         1         1224688999999999999999999999999999999999999999886543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.38  E-value=8.9e-07  Score=44.95  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           93 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      .+|+.+|.++...|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45555666666666666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.36  E-value=0.00017  Score=57.17  Aligned_cols=156  Identities=15%  Similarity=0.012  Sum_probs=113.3

Q ss_pred             CCCChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHc--
Q 027158            2 DCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEA---KGLWAEAEKAYSS-LLEDNPLDPVLHKRRVAIAKAQ--   71 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~~~~l~~~~~~~--   71 (227)
                      |..+|+.-+.+.+.+...    .++.+.+.+..|.++.+   .|+.++|+..+.. .....+.+++.+..+|.+|...  
T Consensus       153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~  232 (374)
T PF13281_consen  153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL  232 (374)
T ss_pred             hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence            446777777777777665    45677888889999988   8999999999999 4555778889999999887652  


Q ss_pred             -------CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH--------hh----CCCCHHHHHHH
Q 027158           72 -------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI--------LS----QPTVPLYHLAY  132 (227)
Q Consensus        72 -------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~----~p~~~~~~~~l  132 (227)
                             ...++|+.+|.++.+++|+ ...-.+++.++...|.-.....-.++..        +.    .-++......+
T Consensus       233 ~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl  311 (374)
T PF13281_consen  233 ESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATL  311 (374)
T ss_pred             HcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence                   2478999999999999964 3444566667766665322221111111        11    12345566778


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          133 ADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +.+..-.|+   +++|...+++++.+.|.
T Consensus       312 ~Ea~vL~~d---~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  312 LEASVLAGD---YEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             HHHHHHcCC---HHHHHHHHHHHhhcCCc
Confidence            888888999   99999999999999885

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.34  E-value=1.8e-06  Score=43.77  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           93 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      .+|+.+|.+++..|++++|+.+|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.32  E-value=7.8e-07  Score=45.08  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 027158          114 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  149 (227)
Q Consensus       114 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~  149 (227)
                      +|+++++++|+++.+++++|.++...|+   +++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~---~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGD---YEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcC---HHhhc
Confidence            4789999999999999999999999999   99886

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=4.6e-06  Score=63.68  Aligned_cols=99  Identities=20%  Similarity=0.157  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  101 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  101 (227)
                      -+..-|+-|+..++|..|+..|.+.++..-.+    ...|.+++.+....|++..|+..+.+++.++|.+..+++.-|.+
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            34456777788888888888888888764333    35677788888888888888888888888888888888888888


Q ss_pred             HHHcccHHHHHHHHHHHHhhCCC
Q 027158          102 YVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus       102 ~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      ++....+..|..+++..+.++..
T Consensus       163 ~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHH
Confidence            88888888888888777665543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.30  E-value=2.4e-05  Score=64.53  Aligned_cols=118  Identities=18%  Similarity=0.117  Sum_probs=98.8

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCChHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKRRVAIAKAQGNFPTAIE   79 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~   79 (227)
                      ...+.|..++......+|+..-..+..|.++...|+.++|++.+++++.....    ....++.++.++..+++|++|..
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            45678999999999999999999999999999999999999999998863322    23567899999999999999999


Q ss_pred             HHHHHHHHcCCCHH-HHHHHHHHHHHcccH-------HHHHHHHHHHHhh
Q 027158           80 WLNKYLETFMADHD-AWRELAEIYVSLQMY-------KQAAFCYEELILS  121 (227)
Q Consensus        80 ~~~~~l~~~p~~~~-~~~~la~~~~~~~~~-------~~A~~~~~~al~~  121 (227)
                      +|.+..+.+.-+.. ..+..|-++...|+.       ++|..+|.++-..
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            99999987655433 445668888889988       8888888877643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=6.6e-05  Score=57.79  Aligned_cols=147  Identities=18%  Similarity=0.034  Sum_probs=118.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-cCCC---HHHHHHHHHHHHHc
Q 027158           30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMAD---HDAWRELAEIYVSL  105 (227)
Q Consensus        30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~~~~  105 (227)
                      .+.+.+..|++-+|-..+++.+...|.+.-++..--..++..|+.......+++.+.. +|+-   ......++..+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3456667799999999999999999999999988888999999999999999998876 5544   45566788888999


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCc---hhHHHhHHHHHHHHHh
Q 027158          106 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN---TKALFGICLCSSAIAQ  179 (227)
Q Consensus       106 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~  179 (227)
                      |-|++|.+..+++++++|.+..+...++.++...|+   +.++.+...+.-+.-....   ...++..++++..-..
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae  262 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE  262 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc
Confidence            999999999999999999999999999999999999   9999988776544322111   2334455555554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.26  E-value=9.2e-05  Score=51.23  Aligned_cols=112  Identities=17%  Similarity=0.010  Sum_probs=69.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  109 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~  109 (227)
                      |......++...++..+.+++.+.....-.-...       ..+- .....++.      ....+...++..+...|+++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~------~~~~~~~~l~~~~~~~~~~~   79 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRE------LYLDALERLAEALLEAGDYE   79 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHH------HHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCHH
Confidence            4455667888888899999888754331100000       1111 11112221      12356677777888888888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          110 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       110 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      .|+..+++++..+|.+..++..+..++...|+   ...|+..|++....
T Consensus        80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   80 EALRLLQRALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888   88888887777543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.22  E-value=0.00048  Score=57.42  Aligned_cols=161  Identities=12%  Similarity=0.027  Sum_probs=127.0

Q ss_pred             CCCChHHHHHHHHHHHHhC-C---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------CHH
Q 027158            2 DCQCLDVAKDCIKVLQKQF-P---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL------------------DPV   59 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------------~~~   59 (227)
                      +.|+.+.|..+|+++.... |   +-..+|..-|..-+...+++.|..+.+++......                  +..
T Consensus       399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk  478 (835)
T KOG2047|consen  399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK  478 (835)
T ss_pred             hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence            3578899999999998753 3   23567888888888889999999999999875211                  245


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCHHHHHHHHH---
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYAD---  134 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~---  134 (227)
                      +|..++...-..|-++.....|++.+++---.|..-.+.|..+....-+++|...|++.+.+.|  .-...|..+-.   
T Consensus       479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi  558 (835)
T KOG2047|consen  479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI  558 (835)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence            6778888888899999999999999999999999999999999999999999999999998864  33444433322   


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhhcCCCchh
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDLTGGKNTK  165 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~  165 (227)
                      .-+..-.   .+.|...|+++++..|+...+
T Consensus       559 ~rygg~k---lEraRdLFEqaL~~Cpp~~aK  586 (835)
T KOG2047|consen  559 KRYGGTK---LERARDLFEQALDGCPPEHAK  586 (835)
T ss_pred             HHhcCCC---HHHHHHHHHHHHhcCCHHHHH
Confidence            2222234   899999999999999863333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.00052  Score=50.67  Aligned_cols=205  Identities=10%  Similarity=-0.016  Sum_probs=134.7

Q ss_pred             hHHHHHHHHHHHHh-CCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChH
Q 027158            6 LDVAKDCIKVLQKQ-FPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFP   75 (227)
Q Consensus         6 ~~~A~~~~~~~~~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~   75 (227)
                      ..++.+..-..... .|+.   ...+..-+.+|...+++++|...+.++.+-..++.      .++...+.+......+.
T Consensus         9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls   88 (308)
T KOG1585|consen    9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS   88 (308)
T ss_pred             HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence            34555554444442 3432   33455567788888999999999999997654442      44556667777888999


Q ss_pred             HHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCc
Q 027158           76 TAIEWLNKYLETF-----MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDN  144 (227)
Q Consensus        76 ~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~  144 (227)
                      ++..+++++..+.     |+.+..-...+--.....+++.|+.+|++++.+-..+      ...+...+.++.+...   
T Consensus        89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k---  165 (308)
T KOG1585|consen   89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK---  165 (308)
T ss_pred             HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH---
Confidence            9999999998874     4444445555556677889999999999999765433      2345666777888888   


Q ss_pred             HHHHHHHHHHHhhhc----CC-CchhHHHhHHHHHHHHHhhhcCCCccccc------hHHHHHHHHHHHHHHHHhhCChh
Q 027158          145 ILLAKKYYASTIDLT----GG-KNTKALFGICLCSSAIAQLTKGRNKEDKE------SPELQSLAAAALEKDYKQRAPAK  213 (227)
Q Consensus       145 ~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~  213 (227)
                      +.+|-..+.+-....    .- ..-+...+.++++....++..+..-.++.      ...-...+.++|+..|.+..++.
T Consensus       166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~  245 (308)
T KOG1585|consen  166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEE  245 (308)
T ss_pred             hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHH
Confidence            998888777654331    11 24456777778877766654332222221      11223346778888888776654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=2.1e-05  Score=57.77  Aligned_cols=104  Identities=15%  Similarity=0.113  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLD----------PVLHKRRVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      .++...|+-++..|+|.+|...|+.++..        .|.+          ...+.+++.|+...|++-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            46677899999999999999999998754        4544          35678899999999999999999999999


Q ss_pred             HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      .+|.+..+++..|.+....=+..+|..-|.+++.++|.-..+
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999999999999999999999999975443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.20  E-value=0.00043  Score=54.47  Aligned_cols=155  Identities=14%  Similarity=-0.027  Sum_probs=103.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      -|+++.|.+-|+.++. +|.. .--+..+-......|+.+.|..+-.++....|.-+.++...-...+..|+++.|+++.
T Consensus       133 eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv  211 (531)
T COG3898         133 EGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV  211 (531)
T ss_pred             cCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence            3677777777777654 2321 1111112223345578888888888888888888777777777778888888888888


Q ss_pred             HHHHHHc---CCCH---HHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           82 NKYLETF---MADH---DAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        82 ~~~l~~~---p~~~---~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      +......   ++-.   .+-...+..... .-+...|...-.+++++.|+-..+-..-+..++..|+   ..++-..++.
T Consensus       212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~---~rKg~~ilE~  288 (531)
T COG3898         212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN---LRKGSKILET  288 (531)
T ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc---hhhhhhHHHH
Confidence            7755432   2211   122222222211 2456777777778888888887787888888999999   9999999999


Q ss_pred             HhhhcCC
Q 027158          155 TIDLTGG  161 (227)
Q Consensus       155 ~~~~~~~  161 (227)
                      +++..|.
T Consensus       289 aWK~ePH  295 (531)
T COG3898         289 AWKAEPH  295 (531)
T ss_pred             HHhcCCC
Confidence            9998885

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.17  E-value=4.9e-06  Score=42.15  Aligned_cols=32  Identities=16%  Similarity=0.060  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA   90 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~   90 (227)
                      .+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.15  E-value=0.00018  Score=49.77  Aligned_cols=48  Identities=15%  Similarity=0.035  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  180 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (227)
                      ...++..+...|+   +++|+..+.+++..+|. +...+..+..++...++.
T Consensus        65 ~~~l~~~~~~~~~---~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~  112 (146)
T PF03704_consen   65 LERLAEALLEAGD---YEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRR  112 (146)
T ss_dssp             HHHHHHHHHHTT----HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHhccC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCH
Confidence            3344455555555   55555555555555552 455555555555554443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.00048  Score=52.21  Aligned_cols=148  Identities=15%  Similarity=0.039  Sum_probs=111.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      ..|++.+|...|..++...|++..+...++.++...|+.+.|...+...=....... .........+.+.....+ ...
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~~~  224 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE-IQD  224 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-HHH
Confidence            568999999999999999999999999999999999999999887766433322221 111122344444444444 345


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYTLGGVDNILLAKKYYA  153 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  153 (227)
                      +++.+..+|++..+-+.+|..+...|+.+.|.+.+-..++.+-  .+..+...+-.++...|.   -+.+...|+
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~---~Dp~~~~~R  296 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP---ADPLVLAYR  296 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC---CCHHHHHHH
Confidence            6667788999999999999999999999999999988887754  556778888888888885   333444443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.14  E-value=9.5e-06  Score=40.98  Aligned_cols=32  Identities=25%  Similarity=0.123  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA   90 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~   90 (227)
                      .+++.+|.++...|++++|+.+|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555556666666666666666666655554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.13  E-value=0.00079  Score=53.01  Aligned_cols=146  Identities=11%  Similarity=0.003  Sum_probs=115.8

Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158           11 DCIKVLQKQFPESKRVGRLEGILLEAKGL------------WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus        11 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      ..+++.+..+|.+...|..+.......-.            .+.-+.+|++|++.+|++...+..+..+.....+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788889999999999888765544422            456678999999999999999999999888999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhCC----C--------------CHHHHHHHHHHHH
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFCYEELILSQP----T--------------VPLYHLAYADVLY  137 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p----~--------------~~~~~~~la~~~~  137 (227)
                      .-+++++..+|++...|...-.....   .-.+......|.+++..-.    .              -..++.+++....
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~  165 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR  165 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877666554   2346677777777774211    0              0235777788888


Q ss_pred             HcCCCCcHHHHHHHHHHHhhhc
Q 027158          138 TLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       138 ~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      ..|.   .+.|+..++-.++.+
T Consensus       166 ~aG~---~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  166 QAGY---TERAVALWQALLEFN  184 (321)
T ss_pred             HCCc---hHHHHHHHHHHHHHH
Confidence            8999   999999999999985

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.13  E-value=3.5e-05  Score=61.93  Aligned_cols=147  Identities=14%  Similarity=0.111  Sum_probs=119.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHcCC--------CHHHHHHH
Q 027158           28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY-LETFMA--------DHDAWREL   98 (227)
Q Consensus        28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-l~~~p~--------~~~~~~~l   98 (227)
                      ......+.+..+...+..-.+-++....+++.+....+..++..|++.+|.+.+... +...|.        ..-+|.++
T Consensus       210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl  289 (696)
T KOG2471|consen  210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL  289 (696)
T ss_pred             HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence            344456677777888888888888888888899999999999999999999987753 333333        23468999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           99 AEIYVSLQMYKQAAFCYEELIL-S--------QP---------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        99 a~~~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      |-+++..|.|.-+..+|.+|++ .        .|         ......++.|..|...|+   .-.|...|.++++...
T Consensus       290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr---Pl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR---PLLAFQCFQKAVHVFH  366 (696)
T ss_pred             ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC---cHHHHHHHHHHHHHHh
Confidence            9999999999999999999995 1        11         234689999999999999   9999999999999988


Q ss_pred             CCchhHHHhHHHHHHHHH
Q 027158          161 GKNTKALFGICLCSSAIA  178 (227)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~  178 (227)
                      . +++.|..++-|+.--.
T Consensus       367 ~-nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  367 R-NPRLWLRLAECCIMAL  383 (696)
T ss_pred             c-CcHHHHHHHHHHHHHh
Confidence            4 9999999999887543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=8.3e-05  Score=57.01  Aligned_cols=100  Identities=16%  Similarity=0.062  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                      .-+..-|+-|+...+|..|+.+|.+++...-.+    ...|.+.|-+....|+|..|+.-+.+++.++|.+..++++=|.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            446677888899999999999999999986555    4578899999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      |++.+..   +..|....+..+.++..
T Consensus       162 c~~eLe~---~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  162 CLLELER---FAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHH---HHHHHHHHhhhhhhhHH
Confidence            9999999   99999999999887653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.09  E-value=0.00028  Score=54.98  Aligned_cols=158  Identities=14%  Similarity=0.001  Sum_probs=114.8

Q ss_pred             CCChHHHHHHHHHHHHhCCC------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CC------HHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP----LD------PVLHKRRVA   66 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----~~------~~~~~~l~~   66 (227)
                      ++.++++++.|+.++....+      ...+...+|..+-...++++|..+..++.++-.    ++      ..+++.++.
T Consensus       135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV  214 (518)
T KOG1941|consen  135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV  214 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence            46788999999999886432      235678899999999999999999999988622    22      245678888


Q ss_pred             HHHHcCChHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHH
Q 027158           67 IAKAQGNFPTAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYAD  134 (227)
Q Consensus        67 ~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~  134 (227)
                      .+..+|+.-.|.++.+++.++.      |-.+.....+|++|...|+.+.|..-|+.|+.....      ...++...|.
T Consensus       215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Ak  294 (518)
T KOG1941|consen  215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAK  294 (518)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            9999999999999999998864      223557788999999999999999999999865432      1234455555


Q ss_pred             HHHHcCC--CCcHHHHHHHHHHHhhhcC
Q 027158          135 VLYTLGG--VDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       135 ~~~~~g~--~~~~~~A~~~~~~~~~~~~  160 (227)
                      ++....-  ..---.|++.-++++++..
T Consensus       295 c~~~~r~~~k~~~Crale~n~r~levA~  322 (518)
T KOG1941|consen  295 CLETLRLQNKICNCRALEFNTRLLEVAS  322 (518)
T ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHH
Confidence            5443332  0001236666666666643

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.02  E-value=0.0014  Score=53.21  Aligned_cols=126  Identities=18%  Similarity=-0.012  Sum_probs=98.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-----------------
Q 027158           28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-----------------   90 (227)
Q Consensus        28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~-----------------   90 (227)
                      ..+..-..+..+...-++.-+++++++|+-+.+|..++.-.  .....+|..+|+++++....                 
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            34445556778899999999999999999999998777632  22357788888887764211                 


Q ss_pred             ----C----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           91 ----D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        91 ----~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                          +    ..+-..+|.+..+.|+.++|++.++..++..|.  +..++.++..++..++.   +.++...+.+.-+.
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~---Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA---YADVQALLAKYDDI  324 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC---HHHHHHHHHHhccc
Confidence                0    224568999999999999999999999988775  46689999999999999   99999988886544

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.0013  Score=48.70  Aligned_cols=170  Identities=15%  Similarity=0.167  Sum_probs=116.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHc
Q 027158            3 CQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQ   71 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~   71 (227)
                      .++|++|..++.++.+-+.++      ...+-..+........+.++..+++++...     .|+....-...+.-....
T Consensus        44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len  123 (308)
T KOG1585|consen   44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN  123 (308)
T ss_pred             hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Confidence            357888888888888654432      234455666777789999999999999887     344444444555556677


Q ss_pred             CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh----hCCCCHH--HHHHHHHHHHHc
Q 027158           72 GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL----SQPTVPL--YHLAYADVLYTL  139 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~--~~~~la~~~~~~  139 (227)
                      -++++|+++|++++.+...+      .+.+...+.++.+...|.+|-..+.+-..    .+..+..  .+.....++...
T Consensus       124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~  203 (308)
T KOG1585|consen  124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA  203 (308)
T ss_pred             CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH
Confidence            88999999999999876554      34566778889999999998877766542    2322333  333333445555


Q ss_pred             CCCCcHHHHHHHHHHHhhhcCC---CchhHHHhHHHHHH
Q 027158          140 GGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSS  175 (227)
Q Consensus       140 g~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~  175 (227)
                      .+   +..|...|+...++..-   .+.+...++...+.
T Consensus       204 ~D---yv~aekc~r~~~qip~f~~sed~r~lenLL~ayd  239 (308)
T KOG1585|consen  204 HD---YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD  239 (308)
T ss_pred             HH---HHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence            68   99999999987775321   24555555554443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.01  E-value=2.7e-06  Score=65.13  Aligned_cols=92  Identities=15%  Similarity=0.035  Sum_probs=78.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  110 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~  110 (227)
                      +.-.+..|+++.|++.|..++.++|....++...+.++..+++...|+..+..++.++|+.+.-+-..|.....+|+|++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            44556678888888888888888888888888888888888888888988988888888888888888888888888888


Q ss_pred             HHHHHHHHHhhC
Q 027158          111 AAFCYEELILSQ  122 (227)
Q Consensus       111 A~~~~~~al~~~  122 (227)
                      |...+..+.+++
T Consensus       201 aa~dl~~a~kld  212 (377)
T KOG1308|consen  201 AAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHhcc
Confidence            888888888765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.00019  Score=57.92  Aligned_cols=91  Identities=14%  Similarity=0.131  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHh
Q 027158           42 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELIL  120 (227)
Q Consensus        42 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~  120 (227)
                      .-...|++++...+.++..|..........+.+.+--..|.+++..+|++++.|..-|...+..+. .+.|...|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345677888888888888888888777777778888888888888888888888888888777665 8888888888888


Q ss_pred             hCCCCHHHHHHH
Q 027158          121 SQPTVPLYHLAY  132 (227)
Q Consensus       121 ~~p~~~~~~~~l  132 (227)
                      .+|+++..|...
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            888887765443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.0031  Score=51.11  Aligned_cols=171  Identities=10%  Similarity=0.004  Sum_probs=123.2

Q ss_pred             CCChHHHHHHHHHHHHhC---CC-------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CH--HHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQF---PE-------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-DP--VLHKRRVAIAK   69 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~---p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~--~~~~~l~~~~~   69 (227)
                      .|++.+|+..+..+.+..   |.       .+.++..+|......+-++.|...|..+++.... +.  .+-.+++..|.
T Consensus       336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL  415 (629)
T KOG2300|consen  336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL  415 (629)
T ss_pred             hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence            588999998888887754   43       3456788898888999999999999999987432 32  34467888999


Q ss_pred             HcCChHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 027158           70 AQGNFPTAIEWLNKYLETFMAD----------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYA  133 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la  133 (227)
                      +.|+.+.--+.++.   +.|.+          ..+++..|...+.++++.+|...+.+.++.....      ...+..++
T Consensus       416 ~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs  492 (629)
T KOG2300|consen  416 RIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS  492 (629)
T ss_pred             HhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence            98876554444433   44543          3467788999999999999999999999876211      23577888


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhhcCC-CchhHHHhHHHHHHHHHh
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  179 (227)
                      .+....|+   ..++.+..+-++++... ++.....--...+..+.+
T Consensus       493 ~v~lslgn---~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~  536 (629)
T KOG2300|consen  493 HVFLSLGN---TVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQ  536 (629)
T ss_pred             HHHHHhcc---hHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            99999999   99999999888877544 333333322333444444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.92  E-value=0.0027  Score=45.39  Aligned_cols=97  Identities=13%  Similarity=0.063  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      -..++..+...|++++|+..++.++....+.   +-+-.+||.+...+|.+++|+..+...... .-.+......|+++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHH
Confidence            3456777888999999999999998543332   346779999999999999999887664321 112344677899999


Q ss_pred             HcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          138 TLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       138 ~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..|+   -++|+..|.+++...++
T Consensus       171 ~kg~---k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         171 AKGD---KQEARAAYEKALESDAS  191 (207)
T ss_pred             HcCc---hHHHHHHHHHHHHccCC
Confidence            9999   99999999999999764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.90  E-value=2.9e-05  Score=39.17  Aligned_cols=30  Identities=30%  Similarity=0.487  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      +|+.+|.+|...|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344444444444444444444444444444

...

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.87  E-value=0.0019  Score=51.56  Aligned_cols=144  Identities=15%  Similarity=0.038  Sum_probs=111.3

Q ss_pred             HHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCCH---HHHHHHH
Q 027158           15 VLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------------------------NPLDP---VLHKRRV   65 (227)
Q Consensus        15 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------------------------~p~~~---~~~~~l~   65 (227)
                      .++..+|-+...+..++.++..+|+...|.+++++++-.                          .+.|.   .+.+...
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            445678899999999999999999999999998888543                          11222   3345566


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHcCC-CHHHHH-HHHHHHHHcccHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHH
Q 027158           66 AIAKAQGNFPTAIEWLNKYLETFMA-DHDAWR-ELAEIYVSLQMYKQAAFCYEELILSQP-----TVPLYHLAYADVLYT  138 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~-~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~  138 (227)
                      ..+.+.|-+..|.++.+-.+.++|. ||-... .+-....+.++|+--+..++.......     .-|..-+..|.+++.
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~  190 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR  190 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence            6778899999999999999999999 765444 444445677899988888887665221     134567788888888


Q ss_pred             cCCCCcH---------------HHHHHHHHHHhhhcCC
Q 027158          139 LGGVDNI---------------LLAKKYYASTIDLTGG  161 (227)
Q Consensus       139 ~g~~~~~---------------~~A~~~~~~~~~~~~~  161 (227)
                      .++   -               +.|...+.+++..-|.
T Consensus       191 l~~---~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  191 LEK---EESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             hcC---ccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            888   5               8999999999999884

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.86  E-value=1.4e-05  Score=61.27  Aligned_cols=89  Identities=15%  Similarity=-0.053  Sum_probs=84.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|.+++|++.+..++.++|.....+.-.+.++...+++..|+.-|..++.++|+....|...+.....+|++.+|...+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl  205 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL  205 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 027158           82 NKYLETFMA   90 (227)
Q Consensus        82 ~~~l~~~p~   90 (227)
                      ..+++++-+
T Consensus       206 ~~a~kld~d  214 (377)
T KOG1308|consen  206 ALACKLDYD  214 (377)
T ss_pred             HHHHhcccc
Confidence            999998744

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.0098  Score=51.49  Aligned_cols=195  Identities=17%  Similarity=0.155  Sum_probs=111.3

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---------------------NPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      .++..|..-|......|+.+.|+.+|..+-..                     ...+..+.+.+|..|...|++.+|+.+
T Consensus       910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F  989 (1416)
T KOG3617|consen  910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF  989 (1416)
T ss_pred             cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34556666788888999999999999888443                     345667788999999999999999999


Q ss_pred             HHHHHHH------cCCC---HHH-----------HHHHHHHHHHcc-cHHHHHHHHHHHH--------------------
Q 027158           81 LNKYLET------FMAD---HDA-----------WRELAEIYVSLQ-MYKQAAFCYEELI--------------------  119 (227)
Q Consensus        81 ~~~~l~~------~p~~---~~~-----------~~~la~~~~~~~-~~~~A~~~~~~al--------------------  119 (227)
                      |.++-..      ..++   ...           ....|..|...| .+..|+.+|.+|-                    
T Consensus       990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen  990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence            9886432      1111   011           111222233333 4444444443321                    


Q ss_pred             ---hhCC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH------HhhhcCCCchhHHHhHHHHHHHHHhhhcCCCcccc
Q 027158          120 ---LSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYAS------TIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDK  189 (227)
Q Consensus       120 ---~~~p-~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  189 (227)
                         .++| .+|..+.+-+..+....+   |++|...+-.      ++++..+.+.+       +-..+.+.....++...
T Consensus      1070 Ia~DLd~~sDp~ll~RcadFF~~~~q---yekAV~lL~~ar~~~~AlqlC~~~nv~-------vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQ---YEKAVNLLCLAREFSGALQLCKNRNVR-------VTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCc-------hhHHHHHhcCcCcCCCc
Confidence               1234 457777777888888888   8888776544      44443322221       22333333333332211


Q ss_pred             c---h----HHHHHHHHH-----HHHHHHHhhCChhhhHHHHHHhhccCC
Q 027158          190 E---S----PELQSLAAA-----ALEKDYKQRAPAKLLLLTSALKSLKTS  227 (227)
Q Consensus       190 ~---~----~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~  227 (227)
                      .   -    ..+.+...+     .-.+.|. +..+|++.+.+.||+..|+
T Consensus      1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT-QAGdKl~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFT-QAGDKLSAMRALLKSGDTQ 1188 (1416)
T ss_pred             cHHHHHHHHHHHHHHHHhccchHHHHHHHh-hhhhHHHHHHHHHhcCCcc
Confidence            1   1    111111111     1223333 3458999999999998874

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.85  E-value=9.2e-05  Score=60.89  Aligned_cols=93  Identities=17%  Similarity=0.106  Sum_probs=43.5

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158           36 AKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  114 (227)
Q Consensus        36 ~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~  114 (227)
                      ..|+.-.|+.++..++...|... ....+++.+....|-...|..++.+++.+....|-.++.+|..+....+.+.|++.
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            33444444444444444444322 22334444444444444444444444444444444444444444444445555555


Q ss_pred             HHHHHhhCCCCHHH
Q 027158          115 YEELILSQPTVPLY  128 (227)
Q Consensus       115 ~~~al~~~p~~~~~  128 (227)
                      |+.|+..+|+++..
T Consensus       699 ~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  699 FRQALKLTTKCPEC  712 (886)
T ss_pred             HHHHHhcCCCChhh
Confidence            55555444444443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.84  E-value=0.0027  Score=50.54  Aligned_cols=140  Identities=21%  Similarity=0.140  Sum_probs=106.6

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-cCC------
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMA------   90 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~------   90 (227)
                      .....+...+.+....|.++.|...+.++...++    ..+.+....+.++...|+..+|+..++..+.. ...      
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            4556778888899999999999999999888652    25677788899999999999999999888871 110      


Q ss_pred             --------------------C-------HHHHHHHHHHHHHc------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           91 --------------------D-------HDAWRELAEIYVSL------QMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        91 --------------------~-------~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                                          .       +.++..+|......      +..++++..|..++..+|+...+|..+|..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence                                0       33566777777777      88888999999999999999889888888776


Q ss_pred             HcCCC--------------CcHHHHHHHHHHHhhhcCC
Q 027158          138 TLGGV--------------DNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       138 ~~g~~--------------~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..-..              .-...|+..|-+++..++.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            54320              0124577788888887774

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.83  E-value=0.0024  Score=44.36  Aligned_cols=99  Identities=15%  Similarity=0.014  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      ..+..+..+-...++.+++...+....-+.|..+..-..-|.+++..|+|.+|+..++.+....|..+.+.-.++.|++.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            44555666666778888888888888888899988888889999999999999999999888888888888888888888


Q ss_pred             cCCCCcHHHHHHHHHHHhhhcCC
Q 027158          139 LGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       139 ~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +|+   .. =..+-.++++..++
T Consensus        91 ~~D---~~-Wr~~A~evle~~~d  109 (160)
T PF09613_consen   91 LGD---PS-WRRYADEVLESGAD  109 (160)
T ss_pred             cCC---hH-HHHHHHHHHhcCCC
Confidence            887   22 22233445665554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.82  E-value=0.0086  Score=46.47  Aligned_cols=149  Identities=13%  Similarity=-0.020  Sum_probs=63.8

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPT   76 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~   76 (227)
                      .+..|...+..+....  ++.....++.++...    .+..+|..+|..+.  ....+.+.+.+|.++..    ..+..+
T Consensus        56 ~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~  131 (292)
T COG0790          56 DYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVK  131 (292)
T ss_pred             cHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHH
Confidence            3444444444444311  123344444444433    34445555555222  23344444455555444    224555


Q ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcc-------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCcHHH
Q 027158           77 AIEWLNKYLETFMAD-HDAWRELAEIYVSLQ-------MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDNILL  147 (227)
Q Consensus        77 A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~~  147 (227)
                      |..+|+++.+..... ..+...+|.+|..-.       +...|..+|.++-...  ++.+...+|.+|..- |-..++.+
T Consensus       132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~  209 (292)
T COG0790         132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKK  209 (292)
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHH
Confidence            555555554443222 122444444444321       1224555555544433  444445555444332 21223555


Q ss_pred             HHHHHHHHhhhc
Q 027158          148 AKKYYASTIDLT  159 (227)
Q Consensus       148 A~~~~~~~~~~~  159 (227)
                      |...|.++.+..
T Consensus       210 A~~wy~~Aa~~g  221 (292)
T COG0790         210 AFRWYKKAAEQG  221 (292)
T ss_pred             HHHHHHHHHHCC
Confidence            555555555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.81  E-value=0.0082  Score=47.55  Aligned_cols=149  Identities=15%  Similarity=0.005  Sum_probs=74.4

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHH----------------------------------
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSS----------------------------------   49 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~----------------------------------   49 (227)
                      |..+-|..+...+..+-|.-+-+....-...+..|+|+.|+++.+.                                  
T Consensus       168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~  247 (531)
T COG3898         168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS  247 (531)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence            4455555555555555555555544444455555555555555544                                  


Q ss_pred             -------HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHH---HHHH
Q 027158           50 -------LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY---EELI  119 (227)
Q Consensus        50 -------~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~---~~al  119 (227)
                             ++++.|+...+-..-+..++..|+..++-.+++.+.+.+|+ +.++  +..++.+.|+  .++.-+   .+..
T Consensus       248 Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gd--ta~dRlkRa~~L~  322 (531)
T COG3898         248 ARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGD--TALDRLKRAKKLE  322 (531)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCC--cHHHHHHHHHHHH
Confidence                   44444444444444445555555555555555555555543 2211  1111222222  222222   2222


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       120 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      .+.|++.......+..-+..|+   +..|..--+.+....|
T Consensus       323 slk~nnaes~~~va~aAlda~e---~~~ARa~Aeaa~r~~p  360 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGE---FSAARAKAEAAAREAP  360 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccc---hHHHHHHHHHHhhhCc
Confidence            3445555566666666666666   6666666666666666

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0016  Score=48.63  Aligned_cols=168  Identities=15%  Similarity=0.089  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH-HHHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-TAIEWLNK   83 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~   83 (227)
                      -..|+.+...++..+|.+-.+|...-.++... .+..+-++++.+++..+|.+..+|..+-.+....|++. .-+++.+.
T Consensus        59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~  138 (318)
T KOG0530|consen   59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL  138 (318)
T ss_pred             CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence            34566666666667776666766666666555 46778889999999999999999999999888899888 78999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCC--CcHHHHHHHHHHHhhhcC
Q 027158           84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGGV--DNILLAKKYYASTIDLTG  160 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~--~~~~~A~~~~~~~~~~~~  160 (227)
                      ++..+..+-.+|...-.+...-+.|+.-+.+..+.++.+-.|-.+|...-.+... .|-.  ...+.-+.+..+.+...|
T Consensus       139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP  218 (318)
T KOG0530|consen  139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVP  218 (318)
T ss_pred             HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999887776666554332222 2221  114455667788888888


Q ss_pred             CCchhHHHhHHHHH
Q 027158          161 GKNTKALFGICLCS  174 (227)
Q Consensus       161 ~~~~~~~~~l~~~~  174 (227)
                      + +..+|.-+.-..
T Consensus       219 ~-NeSaWnYL~G~l  231 (318)
T KOG0530|consen  219 N-NESAWNYLKGLL  231 (318)
T ss_pred             C-CccHHHHHHHHH
Confidence            5 666665444333

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.71  E-value=0.00013  Score=36.73  Aligned_cols=31  Identities=23%  Similarity=0.207  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM   89 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p   89 (227)
                      .+|..+|.++...|++++|+..|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3456666666666666666666666666666

...

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.0011  Score=53.74  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 027158            8 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLE   86 (227)
Q Consensus         8 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~   86 (227)
                      +-..+|+.+..+++.++..|..........+.+.+-...|.+++..+|+++++|..-+...+..+. .+.|...|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            346789999999999999999988888888889999999999999999999999988887777665 9999999999999


Q ss_pred             HcCCCHHHHHHH
Q 027158           87 TFMADHDAWREL   98 (227)
Q Consensus        87 ~~p~~~~~~~~l   98 (227)
                      .+|+++..|...
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            999999988643

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.0024  Score=45.65  Aligned_cols=116  Identities=11%  Similarity=-0.012  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhCCCchh---hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            9 AKDCIKVLQKQFPESKR---VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         9 A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      ......+....+|.+..   ....++..+...+++++|...++.++....+.   ..+-..++.+...+|.+++|+..+.
T Consensus        71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~  150 (207)
T COG2976          71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD  150 (207)
T ss_pred             hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            33444455555544332   23556788889999999999999999754433   2456789999999999999999988


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      ..-.-. -.+......|+++...|+-.+|...|++++...+..
T Consensus       151 t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         151 TIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             cccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            643211 123345678999999999999999999999987544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.66  E-value=0.0079  Score=48.47  Aligned_cols=144  Identities=15%  Similarity=0.069  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHH---------cC---CCHH
Q 027158           29 LEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE--WLNKYLET---------FM---ADHD   93 (227)
Q Consensus        29 ~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~l~~---------~p---~~~~   93 (227)
                      .-|.-++..|. -++|+..++.++.-.|.+...-+..-. +.+ ..|.+|+.  .+-+.+.+         .|   .+.+
T Consensus       384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~-fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e  461 (549)
T PF07079_consen  384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL-FVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE  461 (549)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH-HHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence            34556666676 789999999999988888754322211 111 11222211  12222221         12   1233


Q ss_pred             HHHHH--HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-CchhHHHhH
Q 027158           94 AWREL--AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGI  170 (227)
Q Consensus        94 ~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l  170 (227)
                      .-..|  |..++.+|+|.++..+..-..++.| ++.++..+|.+++...+   |.+|..++...-- +.+ .+....-++
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~---Y~eA~~~l~~LP~-n~~~~dskvqKAl  536 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR---YQEAWEYLQKLPP-NERMRDSKVQKAL  536 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh---HHHHHHHHHhCCC-chhhHHHHHHHHH
Confidence            44444  4457789999999999999999999 89999999999999999   9999999975433 221 567778889


Q ss_pred             HHHHHHHHh
Q 027158          171 CLCSSAIAQ  179 (227)
Q Consensus       171 ~~~~~~~~~  179 (227)
                      ++|+..+.+
T Consensus       537 ~lCqKh~~k  545 (549)
T PF07079_consen  537 ALCQKHLPK  545 (549)
T ss_pred             HHHHHhhhh
Confidence            999888764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.63  E-value=0.00018  Score=35.84  Aligned_cols=30  Identities=30%  Similarity=0.406  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           95 WRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      ++.+|.++...|++++|+..|++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444444444444455555554444444443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.63  E-value=0.0014  Score=42.38  Aligned_cols=90  Identities=19%  Similarity=0.125  Sum_probs=44.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHcCCCHHHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQGN-----------FPTAIEWLNKYLETFMADHDAWR   96 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~~~-----------~~~A~~~~~~~l~~~p~~~~~~~   96 (227)
                      +.-++..|++-+|+++.+..+..++++..   .+..-|.++..+..           .-.++++|.++..+.|..+..++
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            44556667777777777777766665543   23333333332210           12344444444444444444444


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHh
Q 027158           97 ELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        97 ~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      .+|.-+-...-|++++.-.++++.
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhc
Confidence            444444444444444444444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.62  E-value=0.00013  Score=37.42  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           95 WRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        95 ~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      |.+||.+|...|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.003  Score=54.50  Aligned_cols=125  Identities=15%  Similarity=0.134  Sum_probs=87.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----------HHHcCC--------
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY----------LETFMA--------   90 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~p~--------   90 (227)
                      ++-..|...|.|++|.+..+.-=+++  -...|++.+..+...++.+.|+++|+++          +.-+|.        
T Consensus       831 LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~  908 (1416)
T KOG3617|consen  831 LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR  908 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence            34455556666666665543221111  2356788888888899999999999883          223332        


Q ss_pred             --CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---------------------CCCHHHHHHHHHHHHHcCCCCcHHH
Q 027158           91 --DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ---------------------PTVPLYHLAYADVLYTLGGVDNILL  147 (227)
Q Consensus        91 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~la~~~~~~g~~~~~~~  147 (227)
                        ++..|..-|......|+.+.|+.+|..|-...                     ..+..+.+.+|.-|...|+   +.+
T Consensus       909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~---v~~  985 (1416)
T KOG3617|consen  909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD---VVK  985 (1416)
T ss_pred             ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH---HHH
Confidence              35567777888888999999999999876421                     2345578889999999999   999


Q ss_pred             HHHHHHHHhhh
Q 027158          148 AKKYYASTIDL  158 (227)
Q Consensus       148 A~~~~~~~~~~  158 (227)
                      |+..|.++-..
T Consensus       986 Av~FfTrAqaf  996 (1416)
T KOG3617|consen  986 AVKFFTRAQAF  996 (1416)
T ss_pred             HHHHHHHHHHH
Confidence            99988876543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.59  E-value=0.00029  Score=58.13  Aligned_cols=101  Identities=18%  Similarity=0.130  Sum_probs=88.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 027158           64 RVAIAKAQGNFPTAIEWLNKYLETFMADH-DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  142 (227)
Q Consensus        64 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  142 (227)
                      -|......|+...|+.++..++-..|... ....+||++....|....|-.++.+++.+....|..++.+|..+..+.+ 
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~-  691 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN-  691 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh-
Confidence            34445568999999999999999888754 4678999999999999999999999999998889999999999999999 


Q ss_pred             CcHHHHHHHHHHHhhhcCCCchhHHH
Q 027158          143 DNILLAKKYYASTIDLTGGKNTKALF  168 (227)
Q Consensus       143 ~~~~~A~~~~~~~~~~~~~~~~~~~~  168 (227)
                        .+.|+++|+++++++|+ ++....
T Consensus       692 --i~~a~~~~~~a~~~~~~-~~~~~~  714 (886)
T KOG4507|consen  692 --ISGALEAFRQALKLTTK-CPECEN  714 (886)
T ss_pred             --hHHHHHHHHHHHhcCCC-ChhhHH
Confidence              99999999999999996 654443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.58  E-value=0.0013  Score=45.57  Aligned_cols=85  Identities=18%  Similarity=-0.083  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  105 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  105 (227)
                      .++....+-...++.+++...+..+--+.|..+.+-..-|.+++..|++.+|+..|+.+....|..+.+--.++.|+...
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            34455556666678888888888777788888888888888888888888888888888777787787777788888888


Q ss_pred             ccHHH
Q 027158          106 QMYKQ  110 (227)
Q Consensus       106 ~~~~~  110 (227)
                      |+...
T Consensus        92 ~D~~W   96 (160)
T PF09613_consen   92 GDPSW   96 (160)
T ss_pred             CChHH
Confidence            77654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.54  E-value=0.0085  Score=47.23  Aligned_cols=115  Identities=13%  Similarity=0.059  Sum_probs=90.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158           45 KAYSSLLEDNPLDPVLHKRRVAIAKAQGN------------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA  112 (227)
Q Consensus        45 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~  112 (227)
                      .-+++.++.+|.+..+|..++...-..-.            .+.-+.+|++|++.+|++...+..+-.+.......++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788899999999999999876554322            467788999999999999999999989999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          113 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       113 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .-+++++..+|+++..|..+-......-..-.+......|.++++.-
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            99999999999999888776554443211112677777777777653

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.53  E-value=0.0021  Score=40.41  Aligned_cols=64  Identities=23%  Similarity=0.162  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q 027158           78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGG  141 (227)
Q Consensus        78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  141 (227)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++..  ..+...+-.++..+|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            556677777777777777777777777777777777777777776644  4455555555555554

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.012  Score=44.12  Aligned_cols=119  Identities=12%  Similarity=0.016  Sum_probs=103.1

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH-HHHHHHH
Q 027158           39 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK-QAAFCYE  116 (227)
Q Consensus        39 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~  116 (227)
                      .-..|+.+...++.++|.+..+|..+-.++...+ +..+-+.++.+.++-+|.+-..|...-.+....|++. .-+++.+
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~  137 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK  137 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence            3345667778888999999999988888777654 6778899999999999999999999999999999888 8899999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          117 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       117 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      .++..+..+..+|...-.+...-+.   ++.-+.+..+.++.+-
T Consensus       138 ~~l~~DaKNYHaWshRqW~~r~F~~---~~~EL~y~~~Lle~Di  178 (318)
T KOG0530|consen  138 LMLDDDAKNYHAWSHRQWVLRFFKD---YEDELAYADELLEEDI  178 (318)
T ss_pred             HHHhccccchhhhHHHHHHHHHHhh---HHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998   9988888888887654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.53  E-value=0.0066  Score=48.31  Aligned_cols=118  Identities=15%  Similarity=0.030  Sum_probs=91.9

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHHHcCCCHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKA---QGNFPTAIEWLNK-YLETFMADHDA   94 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~   94 (227)
                      ++.+...+-..|....+|+.=+.+.+..-..    .++.+.+.+.+|.++.+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4455566666788889999888888877665    45667778888888888   8999999999999 55566778999


Q ss_pred             HHHHHHHHHHc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           95 WRELAEIYVSL---------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        95 ~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ++.+|.+|-..         ...++|+.+|.++...+|+... =.+++.++...|.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~  274 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCC
Confidence            99999998654         3578999999999999975433 3556666777775

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.53  E-value=0.00023  Score=35.41  Aligned_cols=31  Identities=16%  Similarity=0.305  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA   90 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~   90 (227)
                      +++.+|.++...|++++|+..|++++..+|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3445555555555555555555555555554

>PRK10941 hypothetical protein; Provisional

Probab=97.53  E-value=0.0022  Score=48.93  Aligned_cols=65  Identities=12%  Similarity=-0.005  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ...++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.   +..|...++..++..|+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c---~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC---EHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCC
Confidence            455667777788888888888888888888888888888888888888   88888888888888875

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.48  E-value=0.015  Score=49.38  Aligned_cols=149  Identities=18%  Similarity=0.011  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQG---   72 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~---   72 (227)
                      ...|...++.+.+..  +......+|.++..-     .+.+.|+.+++.+.+.     .-.++.+.+.+|.+|....   
T Consensus       228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            346677777766543  556667777777655     6899999999999771     1125567788999998854   


Q ss_pred             --ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCcHH
Q 027158           73 --NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDNIL  146 (227)
Q Consensus        73 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~  146 (227)
                        +...|..+|.++-...  ++++.+.+|.++..-.   ++..|..+|..|...  .+..+.+.+|.+|..- |-..+..
T Consensus       306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence              5677999999887654  6788889999988765   678999999998764  4678888898887654 2233489


Q ss_pred             HHHHHHHHHhhhcC
Q 027158          147 LAKKYYASTIDLTG  160 (227)
Q Consensus       147 ~A~~~~~~~~~~~~  160 (227)
                      .|..+|.++.+.++
T Consensus       382 ~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  382 LAFAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHHHHHHHccC
Confidence            99999999999874

>PRK10941 hypothetical protein; Provisional

Probab=97.48  E-value=0.0026  Score=48.53  Aligned_cols=75  Identities=16%  Similarity=0.086  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  135 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  135 (227)
                      ..++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+-.....+
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            345566777778888888888888888888888888888888888888888888888888888777665444433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.035  Score=46.27  Aligned_cols=140  Identities=16%  Similarity=-0.021  Sum_probs=110.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH-
Q 027158           38 GLWAEAEKAYSSLLEDNPLDPVLHKR--RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC-  114 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~-  114 (227)
                      +....++..+...+..+|.++..+..  +...+...+....+...+...+..+|.++.+..+|+......|..-.+... 
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            44445777788888888888876433  466677788898999999999999999999999999998887766555554 


Q ss_pred             HHHHHhhCCCCHHHHHHH------HHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          115 YEELILSQPTVPLYHLAY------ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       115 ~~~al~~~p~~~~~~~~l------a~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      .+.+....|.+..+...+      +.....+|+   ..++.....++.+..|. +++...++.....+..++.
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~-~~~~~~~~~~~r~~~cs~~  193 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPK-YPRVLGALMTARQEQCSWP  193 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhh-hhhhHhHHHHHHHHhccch
Confidence            455888889887765555      888888888   99999999999999996 7888777777766555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.46  E-value=0.022  Score=47.00  Aligned_cols=164  Identities=16%  Similarity=0.090  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      .+++..+|++.+.... .+...++.++..-...-+   ++.....+++++.....++ -+|..+...-.+..-.+.|...
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            5677788888877543 344444555544443333   6677788888887643332 4455666666666668888999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh-
Q 027158           81 LNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL-  158 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~-  158 (227)
                      |.++.+.--..-..+..-|.+ |...++..-|...|+-.++..++.+..-......+..+|+   -..|...|++++.. 
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l~s~  465 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVLTSV  465 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHHhcc
Confidence            999876544333455444444 5678999999999999999999999999999999999999   88999999999987 


Q ss_pred             -cCCCchhHHHhHHH
Q 027158          159 -TGGKNTKALFGICL  172 (227)
Q Consensus       159 -~~~~~~~~~~~l~~  172 (227)
                       .|+...+.|-.+..
T Consensus       466 l~~~ks~~Iw~r~l~  480 (656)
T KOG1914|consen  466 LSADKSKEIWDRMLE  480 (656)
T ss_pred             CChhhhHHHHHHHHH
Confidence             44322334433333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.45  E-value=0.005  Score=38.73  Aligned_cols=73  Identities=15%  Similarity=0.043  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChHHHHHHHH
Q 027158           10 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus        10 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++.  ..+...+..++...|.-+....-++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R   82 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence            456677778888888888888888888888888888888888887654  4555556666666655443333333

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.41  E-value=0.037  Score=42.93  Aligned_cols=130  Identities=15%  Similarity=-0.008  Sum_probs=97.3

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLD-PVLHKRRVAIAKAQG-------   72 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~-------   72 (227)
                      +..+|...|+...  ...++...+.+|..+..    ..+..+|..+|+++....-.. ..+...++.++..-.       
T Consensus        92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~  169 (292)
T COG0790          92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY  169 (292)
T ss_pred             cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence            4677888888443  34567788888888887    458899999999999875443 344777887777642       


Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           73 NFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        73 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      +...|...|.++....  ++.+...+|.+|..    ..++.+|..+|.++-....  ...++.++ +++..|.
T Consensus       170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~  237 (292)
T COG0790         170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE  237 (292)
T ss_pred             HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence            2337888888887766  78889999988865    3478999999999988776  78888888 6666664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.38  E-value=0.00058  Score=34.88  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYL   85 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l   85 (227)
                      +..+|.++...|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5566777777777777777777744

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.35  E-value=0.053  Score=43.47  Aligned_cols=129  Identities=17%  Similarity=0.138  Sum_probs=92.8

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc--------------------------CCCHH---HHHHHH
Q 027158           49 SLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------------------------MADHD---AWRELA   99 (227)
Q Consensus        49 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------------------------p~~~~---~~~~la   99 (227)
                      ..+..+|-+.+++..++.++..+|+...|.+++++++-..                          +.|-.   +.....
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            3457799999999999999999999999999999986431                          11111   445567


Q ss_pred             HHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHhhhcCC----CchhHHHhHHHH
Q 027158          100 EIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVL-YTLGGVDNILLAKKYYASTIDLTGG----KNTKALFGICLC  173 (227)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~  173 (227)
                      ..+.+.|-+..|.++++-.+.++|. ||......-+.| .+.++   ++--+..++........    .-+...++.+++
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~---y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA  187 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ---YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA  187 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC---HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence            7778889999999999999999998 776544444444 45555   66666666654442111    123477888888


Q ss_pred             HHHHHhh
Q 027158          174 SSAIAQL  180 (227)
Q Consensus       174 ~~~~~~~  180 (227)
                      +..+++.
T Consensus       188 ~~~l~~~  194 (360)
T PF04910_consen  188 YFRLEKE  194 (360)
T ss_pred             HHHhcCc
Confidence            8888775

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.34  E-value=0.0013  Score=50.37  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=51.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           65 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        65 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                      +.-....|+.++|...|+.++.+.|.+++++...|......++.-+|-.||-+|+.++|.+..++.+.+.
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3344566777778888888888888888887777777777777777777888888777777776665554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.33  E-value=0.0019  Score=36.06  Aligned_cols=34  Identities=21%  Similarity=0.073  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           95 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      .+.+|..+++.|+|++|..+.+.+++..|++..+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            3444444455555555555555555555544443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.31  E-value=0.019  Score=47.31  Aligned_cols=73  Identities=15%  Similarity=0.241  Sum_probs=58.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           48 SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        48 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                      ++-++.+|.+..+|..+..-+..+ ..++....|++.+..+|..+.+|.......+...+|+.-..+|.+++..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            556777888888888887766655 7888888888888888888888888888888888888888888887743

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.30  E-value=0.023  Score=38.94  Aligned_cols=81  Identities=16%  Similarity=-0.030  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      +......-...++.+++...+....-+.|+.+..-..-|.+++..|+|.+|+..++......+..+...-.++.|++.+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444444557888888888888888899999888888999999999999999999988888888888888889999888


Q ss_pred             C
Q 027158          141 G  141 (227)
Q Consensus       141 ~  141 (227)
                      +
T Consensus        93 D   93 (153)
T TIGR02561        93 D   93 (153)
T ss_pred             C
Confidence            8

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.28  E-value=0.0033  Score=51.05  Aligned_cols=124  Identities=11%  Similarity=0.120  Sum_probs=95.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +.|+.-.|-.-+..++...|..|....+.+.+....|+|+.|...+.-+-..-.....+...+-......|++++|...-
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a  380 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA  380 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence            45777777777888888888888888888889999999998888776665544444445556666677888888888888


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      .-.+.-.-++++...-.+......|-+++|..++++.+.++|..
T Consensus       381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            87777666777777666777777888889999999988888754

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.27  E-value=0.00053  Score=52.36  Aligned_cols=87  Identities=10%  Similarity=0.058  Sum_probs=72.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           47 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE-LAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        47 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      |.++-...|+++.+|...+..-...|.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++.+|.+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            444455578888999888888888888888899999999999999999987 5566778899999999999999999999


Q ss_pred             HHHHHHHH
Q 027158          126 PLYHLAYA  133 (227)
Q Consensus       126 ~~~~~~la  133 (227)
                      |..|...-
T Consensus       176 p~iw~eyf  183 (435)
T COG5191         176 PRIWIEYF  183 (435)
T ss_pred             chHHHHHH
Confidence            88765543

>smart00028 TPR Tetratricopeptide repeats

Probab=97.25  E-value=0.00068  Score=32.88  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      +|..+|.++...|+++.|+.++++++...|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            345555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.23  E-value=0.06  Score=45.82  Aligned_cols=148  Identities=16%  Similarity=0.034  Sum_probs=109.6

Q ss_pred             CCChHHHHHHHHHHHHh-----CCCchhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 027158            3 CQCLDVAKDCIKVLQKQ-----FPESKRVGRLEGILLEAKG-----LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG   72 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~   72 (227)
                      ..+.+.|+.++..+...     .-.++.+...+|.+|....     ++..|..+|.++-...  ++.+.+.+|.++....
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT  339 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence            35788899999988771     1125667888999998853     7788999999998765  4566778888887665


Q ss_pred             ---ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCc
Q 027158           73 ---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDN  144 (227)
Q Consensus        73 ---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~  144 (227)
                         +...|..+|..+...  .+..+.+.+|.+|..-    .+...|..++.++....  ++.+...++..+... +.   
T Consensus       340 ~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~---  412 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGR---  412 (552)
T ss_pred             ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccc---
Confidence               578999999998764  5788999999998753    57899999999999887  555556666554433 55   


Q ss_pred             HHHHHHHHHHHhhhc
Q 027158          145 ILLAKKYYASTIDLT  159 (227)
Q Consensus       145 ~~~A~~~~~~~~~~~  159 (227)
                      +..+...+.......
T Consensus       413 ~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  413 YDTALALYLYLAELG  427 (552)
T ss_pred             ccHHHHHHHHHHHhh
Confidence            666665555554443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.21  E-value=0.0045  Score=42.31  Aligned_cols=73  Identities=18%  Similarity=-0.029  Sum_probs=38.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158           37 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  109 (227)
Q Consensus        37 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~  109 (227)
                      .++.+++...+..+--+.|+.+.+-..-|.+++..|++.+|+..|+......+..+...-.++.|+...|+.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            4555555555555555555555555555555555555555555555555544444544455555555555543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.18  E-value=0.013  Score=38.04  Aligned_cols=92  Identities=16%  Similarity=0.149  Sum_probs=69.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHcc-----------cHHHHHHHHHHHHhhCCCCHHHH
Q 027158           64 RVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWRELAEIYVSLQ-----------MYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        64 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      ++.-++..|+.-+|++..+..+...+++..   .+..-|.++..+.           -.-.|+++|.++..+.|.....+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            456788999999999999999999988764   4455677776553           23568999999999999987777


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          130 LAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      +.+|.-+-....   |+++..-.++++..
T Consensus        82 ~~la~~l~s~~~---Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKY---YKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHH---HHHHHHHHHHHhcc
Confidence            777765444444   67777777766655

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.10  E-value=0.13  Score=43.03  Aligned_cols=166  Identities=10%  Similarity=0.016  Sum_probs=122.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      ..|+++...-.+++.+-.-......|+..+......|+.+-|...+.++.+. .|..+.+...-+...-..|++..|...
T Consensus       309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~  388 (577)
T KOG1258|consen  309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI  388 (577)
T ss_pred             hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHH
Confidence            3577788888888887776777888888888888889999888888888775 567777777777888888999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHH---HHHHHHhhCCCC---HHHHHHHHHHHHH-cCCCCcHHHHHHHHH
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAF---CYEELILSQPTV---PLYHLAYADVLYT-LGGVDNILLAKKYYA  153 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~~p~~---~~~~~~la~~~~~-~g~~~~~~~A~~~~~  153 (227)
                      +++....-|+...+-..-..+..+.|..+.+..   ++........+.   .......+...+. .++   .+.|...+.
T Consensus       389 lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d---~~~a~~~l~  465 (577)
T KOG1258|consen  389 LQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED---ADLARIILL  465 (577)
T ss_pred             HHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence            999988888888888888888888888888874   333322221111   2344555554433 445   889999999


Q ss_pred             HHhhhcCCCchhHHHhHH
Q 027158          154 STIDLTGGKNTKALFGIC  171 (227)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~  171 (227)
                      ++++..|+ +...+..+.
T Consensus       466 ~~~~~~~~-~k~~~~~~~  482 (577)
T KOG1258|consen  466 EANDILPD-CKVLYLELI  482 (577)
T ss_pred             HhhhcCCc-cHHHHHHHH
Confidence            99999985 655554443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.12  Score=42.30  Aligned_cols=151  Identities=12%  Similarity=0.030  Sum_probs=108.3

Q ss_pred             CChHHHHHHHHHHHHhCCC------chhh--------HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-------CHH
Q 027158            4 QCLDVAKDCIKVLQKQFPE------SKRV--------GRLEGILLEAKGLWAEAEKAYSSLLED---NPL-------DPV   59 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~------~~~~--------~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~-------~~~   59 (227)
                      |-+++|.++-++++.+...      ..++        +-.+..|-.-.|++.+|++....+...   .|.       .+.
T Consensus       289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~  368 (629)
T KOG2300|consen  289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ  368 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence            5567777777777765321      2222        233456667779999999988887765   444       346


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----------H
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----------P  126 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------~  126 (227)
                      ++..+|......+-++.|...|..+++.-...   +-+..++|..|.+.|+-+.--+.++.   +.|.+          .
T Consensus       369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a  445 (629)
T KOG2300|consen  369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEA  445 (629)
T ss_pred             HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHH
Confidence            67788888888999999999999999875432   33556889999998876655444443   44542          2


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      .+++..|...+..|+   +.+|....++.++...
T Consensus       446 ~~~~v~glfaf~qn~---lnEaK~~l~e~Lkman  476 (629)
T KOG2300|consen  446 SILYVYGLFAFKQND---LNEAKRFLRETLKMAN  476 (629)
T ss_pred             HHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcc
Confidence            356777888888999   9999999999999864

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.05  E-value=0.0011  Score=50.64  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=74.6

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158           13 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR-RVAIAKAQGNFPTAIEWLNKYLETFMAD   91 (227)
Q Consensus        13 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~l~~~p~~   91 (227)
                      |.+....+|+++..|...+......|-+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|.+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            345556788999999999998899999999999999999999999999976 3345677899999999999999999999


Q ss_pred             HHHHHHH
Q 027158           92 HDAWREL   98 (227)
Q Consensus        92 ~~~~~~l   98 (227)
                      |..|...
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            9988754

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.99  E-value=0.0098  Score=48.44  Aligned_cols=124  Identities=16%  Similarity=0.088  Sum_probs=103.6

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  114 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~  114 (227)
                      +..|+.-.|-.-...++...|.+|......+.++...|.|+.+...+..+-..-.....+..-+-.-.+..|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            45689999999999999999999999889999999999999999988877665555555555555667788999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          115 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       115 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .+-.+.-.-.++++...-|.....+|-   +++|..++++++.++|.
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCCh
Confidence            888887666777777767777777888   99999999999999986

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.98  E-value=0.0038  Score=47.88  Aligned_cols=71  Identities=14%  Similarity=0.064  Sum_probs=62.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  101 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  101 (227)
                      +.-....|+.++|..+|.-++.+.|+++.++..+|......++.-+|-.+|-+++.++|.+..++.+.+..
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            33445669999999999999999999999999999998888999999999999999999999988766543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.98  E-value=0.0099  Score=33.20  Aligned_cols=47  Identities=21%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      ..++.+|..++++|+   +.+|..+.+.+++..|+ +..+..-...+..++
T Consensus         2 d~lY~lAig~ykl~~---Y~~A~~~~~~lL~~eP~-N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGE---YEKARRYCDALLEIEPD-NRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT----HHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHH
Confidence            357889999999999   99999999999999996 766655444444443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.93  E-value=0.0018  Score=31.29  Aligned_cols=30  Identities=20%  Similarity=0.108  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFM   89 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p   89 (227)
                      ++..+|.++...|+++.|+..+++++..+|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.92  E-value=0.021  Score=51.65  Aligned_cols=147  Identities=15%  Similarity=0.033  Sum_probs=113.8

Q ss_pred             HHHHHHHHH-HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHH
Q 027158            9 AKDCIKVLQ-KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRRVAIAKAQGNFPTAIE   79 (227)
Q Consensus         9 A~~~~~~~~-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~   79 (227)
                      ++.++.... .+.|+....+..++.++...|++++|+..-.++.-.        .|+....+.+++...+..++...|..
T Consensus       957 slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~ 1036 (1236)
T KOG1839|consen  957 SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALK 1036 (1236)
T ss_pred             hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhh
Confidence            333666444 346788899999999999999999999987777554        35566778888888888899999999


Q ss_pred             HHHHHHHH--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCCC
Q 027158           80 WLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--------TVPLYHLAYADVLYTLGGVD  143 (227)
Q Consensus        80 ~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~  143 (227)
                      .+.++..+        .|.-.....+++.++...++++.|+.+.+.|.....        .....+..++..+..+++  
T Consensus      1037 ~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~d-- 1114 (1236)
T KOG1839|consen 1037 SLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKD-- 1114 (1236)
T ss_pred             hHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHH--
Confidence            99998875        355566778999999999999999999999997542        223456777777777777  


Q ss_pred             cHHHHHHHHHHHhhh
Q 027158          144 NILLAKKYYASTIDL  158 (227)
Q Consensus       144 ~~~~A~~~~~~~~~~  158 (227)
                       +..|..+.+....+
T Consensus      1115 -fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1115 -FRNALEHEKVTYGI 1128 (1236)
T ss_pred             -HHHHHHHHhhHHHH
Confidence             77777776665544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.90  E-value=0.0039  Score=51.11  Aligned_cols=97  Identities=24%  Similarity=0.110  Sum_probs=82.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      -|.-.+..+.+..|+..|.+++...|.....+.+.+.+++..   |+.-.|+.....++.++|....+|+.|+.++...+
T Consensus       380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~  459 (758)
T KOG1310|consen  380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT  459 (758)
T ss_pred             hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence            344444456788899999999999999999999999888764   67778888889999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCH
Q 027158          107 MYKQAAFCYEELILSQPTVP  126 (227)
Q Consensus       107 ~~~~A~~~~~~al~~~p~~~  126 (227)
                      ++.+|+++...+....|.+.
T Consensus       460 r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  460 RYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             hHHHhhhhHHHHhhcCchhh
Confidence            99999999998888888543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.85  E-value=0.048  Score=39.03  Aligned_cols=96  Identities=5%  Similarity=-0.060  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHH----HH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPL----YH  129 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~----~~  129 (227)
                      .++..+|..|.+.|+.+.|++.|.++.+.....   .+.+..+..+.+..++|.....+..++-.....  ++.    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            444555555555555555555555554432221   234445555555555555555555555433221  111    12


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          130 LAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ..-|..+...|+   |..|-..|-.+..
T Consensus       117 ~~~gL~~l~~r~---f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRD---FKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhch---HHHHHHHHHccCc
Confidence            223334444555   6666666655543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.79  E-value=0.19  Score=39.93  Aligned_cols=122  Identities=19%  Similarity=0.131  Sum_probs=97.1

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CC-------
Q 027158           57 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PT-------  124 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------  124 (227)
                      ....|..++.+....|+++.|...+.++...++.    .+...+..+.+....|+..+|+..++..+... ..       
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            3467888899999999999999999999886532    46788889999999999999999999888711 10       


Q ss_pred             -------------------C-------HHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHH
Q 027158          125 -------------------V-------PLYHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGGKNTKALFGICL  172 (227)
Q Consensus       125 -------------------~-------~~~~~~la~~~~~~------g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  172 (227)
                                         .       ..++..+|......      +.   .+++...|..+++.+|. ..++++.++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~-~~k~~~~~a~  300 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES---SDEILKYYKEATKLDPS-WEKAWHSWAL  300 (352)
T ss_pred             HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc---HHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence                               1       12455666655556      55   89999999999999996 8889999999


Q ss_pred             HHHHHHhhhc
Q 027158          173 CSSAIAQLTK  182 (227)
Q Consensus       173 ~~~~~~~~~~  182 (227)
                      .+..+.....
T Consensus       301 ~~~~~~~~~~  310 (352)
T PF02259_consen  301 FNDKLLESDP  310 (352)
T ss_pred             HHHHHHHhhh
Confidence            8888877554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.78  E-value=0.026  Score=41.71  Aligned_cols=84  Identities=20%  Similarity=0.137  Sum_probs=40.7

Q ss_pred             CCHHHHHHHHHHHHhc----C-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------Hc--CCC----HHHHHH
Q 027158           38 GLWAEAEKAYSSLLED----N-PL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-------TF--MAD----HDAWRE   97 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~----~-p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-------~~--p~~----~~~~~~   97 (227)
                      ..+++|++.|.-++-.    . +.  -+.++..+|.+|...|+.+....++++|++       ..  |..    ....+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            3455666655555442    1 11  134455666666666663333333333332       21  111    334555


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhh
Q 027158           98 LAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                      +|.+..+.|++++|..+|.+++..
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcC
Confidence            566666666666666666665543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.65  E-value=0.062  Score=39.71  Aligned_cols=87  Identities=20%  Similarity=0.124  Sum_probs=64.4

Q ss_pred             cCChHHHHHHHHHHHHHc----CCC---HHHHHHHHHHHHHcccH-------HHHHHHHHHHHhhCCC------CHHHHH
Q 027158           71 QGNFPTAIEWLNKYLETF----MAD---HDAWRELAEIYVSLQMY-------KQAAFCYEELILSQPT------VPLYHL  130 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~----p~~---~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p~------~~~~~~  130 (227)
                      ...+++|++.|.-++-..    +..   +..+..+|.+|...|+.       ..|+..|++++.....      .....+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            446778888877776431    111   56788999999999884       5566666666654322      246788


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          131 AYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       131 ~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      .+|.+..+.|+   +++|...|.+++....
T Consensus       170 LigeL~rrlg~---~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  170 LIGELNRRLGN---YDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHhCC---HHHHHHHHHHHHcCCC
Confidence            99999999999   9999999999998654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.64  E-value=0.0039  Score=45.74  Aligned_cols=57  Identities=23%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD   91 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~   91 (227)
                      ...++.+.|.+.|.+++.+.|.....|+.+|......|+++.|...|+++++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344555666666666666666666666666666666666666666666666666654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.59  E-value=0.0061  Score=44.76  Aligned_cols=57  Identities=26%  Similarity=0.290  Sum_probs=35.2

Q ss_pred             HHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           69 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      ...++.+.|.+.|.+++.+-|.....|..+|......|+++.|...|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345556666666666666666666666666666666666666666666666666654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.50  E-value=0.074  Score=38.07  Aligned_cols=94  Identities=15%  Similarity=-0.011  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CH----HHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DH----DAW   95 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~----~~~   95 (227)
                      .++..+|..|...|+.+.|++.|.++.......   .+.+..+..+.+..+++.....++.++-..-..  +.    ...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            567789999999999999999999988865433   367788888999999999999999998765433  22    234


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHH
Q 027158           96 RELAEIYVSLQMYKQAAFCYEEL  118 (227)
Q Consensus        96 ~~la~~~~~~~~~~~A~~~~~~a  118 (227)
                      ..-|..++..++|..|...|-.+
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHcc
Confidence            45677788889999998887554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.16  Score=42.61  Aligned_cols=127  Identities=15%  Similarity=-0.068  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhCCCchhhHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 027158            9 AKDCIKVLQKQFPESKRVGRL--EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK-YL   85 (227)
Q Consensus         9 A~~~~~~~~~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~l   85 (227)
                      ++..+..-+..+|.++..+..  ++..+...+....+......++..+|++..+..+++......|..-.+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333444444456666666433  466677778888999999999999999999999999987777766555555544 88


Q ss_pred             HHcCCCHHHHHHH------HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158           86 ETFMADHDAWREL------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  135 (227)
Q Consensus        86 ~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  135 (227)
                      ...|.+......+      +......|+..++....+++....|.++.....+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            8888887665555      8888888999999999999999999887765555444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.43  E-value=0.01  Score=30.96  Aligned_cols=29  Identities=28%  Similarity=0.268  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           93 DAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                      .++.++|.+|...|++++|..++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            35566666666666666666666666643

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.40  E-value=0.11  Score=34.95  Aligned_cols=71  Identities=13%  Similarity=0.037  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHcC---ChHHHHHHHHHHHH-HcCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           59 VLHKRRVAIAKAQG---NFPTAIEWLNKYLE-TFMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        59 ~~~~~l~~~~~~~~---~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      ...++++.++....   +..+.+.+++..++ -.|.. -+..+.|+..+.+.++|+.++.+.+..++..|+|..+.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            34445555554433   34455556666554 23322 33555566666666666666666666666666655543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.40  E-value=0.14  Score=33.72  Aligned_cols=86  Identities=15%  Similarity=0.050  Sum_probs=46.6

Q ss_pred             HcCChHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHHcccHHHHHHHHHHHHh-------hCCCCH----
Q 027158           70 AQGNFPTAIEWLNKYLETFMAD------------HDAWRELAEIYVSLQMYKQAAFCYEELIL-------SQPTVP----  126 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~----  126 (227)
                      ..|.+++|...++++++....-            +-++-.|+..+...|+|++++...+.++.       ++.+..    
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            3455555555555555543221            22344555566666666666555555552       233322    


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      .+.++.|..+...|.   .++|+..|+.+-+.
T Consensus       101 aaVfsra~Al~~~Gr---~~eA~~~fr~agEM  129 (144)
T PF12968_consen  101 AAVFSRAVALEGLGR---KEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Confidence            244566777777888   88888887776654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.38  E-value=0.26  Score=40.21  Aligned_cols=69  Identities=13%  Similarity=-0.076  Sum_probs=39.7

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158           12 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus        12 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      .+++++.-.|-.+.+|+-........++-+.|+....+++...|.   ....++.++-...+.+..-.+|++
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk  358 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDK  358 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHH
Confidence            455566666666666666666666667767777666666665554   334445555444444444444444

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.31  Score=39.10  Aligned_cols=160  Identities=16%  Similarity=0.079  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAK------------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-   73 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-   73 (227)
                      .+++..-.+++..+|+...+|...-.++...            .-.++-+.+...++..+|++..+|+.+..++.+.+. 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            4567777788888888777776554433322            245667788899999999999999999999987764 


Q ss_pred             -hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------cCC-
Q 027158           74 -FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ----MYKQAAFCYEELILSQPTVPLYHLAYADVLYT------LGG-  141 (227)
Q Consensus        74 -~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~-  141 (227)
                       +..=+.+++++++.+|.+-.+|...-.+.....    ...+=+++..+++.-++.|..+|.....++-.      -|+ 
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~  205 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF  205 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence             578889999999999999888876655554432    35677888999998899999998888776652      221 


Q ss_pred             --CCcHHHHHHHHHHHhhhcCCCchhHH
Q 027158          142 --VDNILLAKKYYASTIDLTGGKNTKAL  167 (227)
Q Consensus       142 --~~~~~~A~~~~~~~~~~~~~~~~~~~  167 (227)
                        ......-+..-..++-.+|+ +..+|
T Consensus       206 ~~~~~l~sEle~v~saiFTdp~-DqS~W  232 (421)
T KOG0529|consen  206 MPKELLQSELEMVHSAIFTDPE-DQSCW  232 (421)
T ss_pred             CCHHHHHHHHHHHHHHHhcCcc-cccee
Confidence              11244556666777777785 44333

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.31  E-value=0.35  Score=37.36  Aligned_cols=122  Identities=15%  Similarity=0.027  Sum_probs=89.9

Q ss_pred             CCCChHHHHHHHHHHHHhC-CCch-------hhHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CC---CC-------H
Q 027158            2 DCQCLDVAKDCIKVLQKQF-PESK-------RVGRLEGILLEAKG-LWAEAEKAYSSLLED----NP---LD-------P   58 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~-p~~~-------~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~----~p---~~-------~   58 (227)
                      ..|+++.|..++.++-... ..++       ...+..|......+ +++.|..+++++++.    .+   ..       .
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            4689999999999998865 3233       45566777777888 999999999999887    21   11       2


Q ss_pred             HHHHHHHHHHHHcCChH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           59 VLHKRRVAIAKAQGNFP---TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      .++..++.++...+.++   +|...++.+-.-.|+.+..+...-.+....++.+.+.+.+.+++..-+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            45667788888877654   455556666666788788776555666668999999999999997654

It is also involved in sporulation [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.27  E-value=0.74  Score=40.67  Aligned_cols=104  Identities=17%  Similarity=0.100  Sum_probs=74.9

Q ss_pred             CCChHHHHHHHHHHHHhCCC--c-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPE--S-------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAIA   68 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~--~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~   68 (227)
                      .+++++|..++.++...-|.  .       ....-..|.+....|+++.|..+.+.++..-|.+     ..++...|.+.
T Consensus       428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~  507 (894)
T COG2909         428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA  507 (894)
T ss_pred             ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence            46788898888888776543  1       2334556778888899999999999999886654     35667788888


Q ss_pred             HHcCChHHHHHHHHHHHHHcC----CCHHHH--HHHHHHHHHcc
Q 027158           69 KAQGNFPTAIEWLNKYLETFM----ADHDAW--RELAEIYVSLQ  106 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p----~~~~~~--~~la~~~~~~~  106 (227)
                      .-.|++++|..+..++.+...    ..-..|  +..+.++..+|
T Consensus       508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence            889999999999888877632    222333  33466666666

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.11  Score=43.94  Aligned_cols=93  Identities=15%  Similarity=0.132  Sum_probs=78.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158           63 RRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  136 (227)
Q Consensus        63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  136 (227)
                      +-+.-.++..+|..++++|...+...|.+      +.....++.||....+.+.|.+++++|-+.+|.++......-.+.
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~  438 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF  438 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            44556677788999999999999887776      456788999999999999999999999999999998888888888


Q ss_pred             HHcCCCCcHHHHHHHHHHHhhh
Q 027158          137 YTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      ...|.   -++|+.........
T Consensus       439 ~~E~~---Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  439 LAEDK---SEEALTCLQKIKSS  457 (872)
T ss_pred             HHhcc---hHHHHHHHHHHHhh
Confidence            88888   88888877666544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.18  E-value=0.1  Score=35.21  Aligned_cols=74  Identities=15%  Similarity=0.031  Sum_probs=60.2

Q ss_pred             chhhHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHH
Q 027158           23 SKRVGRLEGILLEAKG---LWAEAEKAYSSLLE-DNPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR   96 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~-~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   96 (227)
                      +....+.++.++....   +..+.+.+++..++ ..|.. .+..+.++.-+.+.++|+.++.+.+..++..|++..+..
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            4566778888887764   45678999999997 55544 467788999999999999999999999999999987653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.076  Score=40.26  Aligned_cols=65  Identities=15%  Similarity=0.071  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ...++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|..+|.   +.-|+..+...++..|+
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c---~~vAl~dl~~~~~~~P~  247 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC---YHVALEDLSYFVEHCPD  247 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC---chhhHHHHHHHHHhCCC
Confidence            344555567777888888888888888888888888888888888888   88888888888888775

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.02  E-value=0.034  Score=45.89  Aligned_cols=87  Identities=13%  Similarity=-0.064  Sum_probs=77.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 027158           72 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL---QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  148 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  148 (227)
                      +.+..++..|.++++..|.....+.+.+.++++.   |+--.|+.-+..|++++|....+|+.++.++..+++   +.+|
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r---~~ea  464 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR---YLEA  464 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh---HHHh
Confidence            4577899999999999999999999999998886   566678888889999999999999999999999999   9999


Q ss_pred             HHHHHHHhhhcCC
Q 027158          149 KKYYASTIDLTGG  161 (227)
Q Consensus       149 ~~~~~~~~~~~~~  161 (227)
                      +.....+....|.
T Consensus       465 l~~~~alq~~~Pt  477 (758)
T KOG1310|consen  465 LSCHWALQMSFPT  477 (758)
T ss_pred             hhhHHHHhhcCch
Confidence            9988877777773

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.68  Score=41.79  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=87.2

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----------
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----------   91 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----------   91 (227)
                      +.+.+|..+|....+.|...+|++.|-++     +++..|..........|.|++-+.++.-+.+...+.          
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence            56788999999999999999999888664     466777888888888999999888888776542111          


Q ss_pred             -----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           92 -----------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        92 -----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                                       ..-.-..|+-++..|.|+.|.-+|...        .-|..+|..+..+|+   |+.|...-++
T Consensus      1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~Lge---yQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGE---YQGAVDAARK 1245 (1666)
T ss_pred             HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHH---HHHHHHHhhh
Confidence                             111235566777777777776666443        346778888888888   8888877766


Q ss_pred             Hh
Q 027158          155 TI  156 (227)
Q Consensus       155 ~~  156 (227)
                      +-
T Consensus      1246 An 1247 (1666)
T KOG0985|consen 1246 AN 1247 (1666)
T ss_pred             cc
Confidence            53

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.88  E-value=0.39  Score=34.06  Aligned_cols=145  Identities=14%  Similarity=0.106  Sum_probs=95.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHH
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIY  102 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~  102 (227)
                      .-+.-+-+.++.++|+..|..+-+..-...  -+....+.+....|+...|+..|..+-.-.|.-    ..+...-+.++
T Consensus        63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL  142 (221)
T COG4649          63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL  142 (221)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence            334455566888888888888776644433  344566778888888999999888876544321    23455667778


Q ss_pred             HHcccHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158          103 VSLQMYKQAAFCYEELI-LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       103 ~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      ...|-|+.-....+-.- ..+|--..+.-.||..-++.|+   +..|...|.+... +. ..++...+-+.....+.
T Consensus       143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~-Da-~aprnirqRAq~mldlI  214 (221)
T COG4649         143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN-DA-QAPRNIRQRAQIMLDLI  214 (221)
T ss_pred             hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc-cc-cCcHHHHHHHHHHHHHH
Confidence            88888887766655432 2234345577778888888898   9999999988876 22 24444444444444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.86  E-value=0.032  Score=28.98  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETF   88 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~   88 (227)
                      .++..+|.++...|++++|..++++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            466788888888888888888888887653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.83  E-value=0.62  Score=36.00  Aligned_cols=124  Identities=16%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             HHHcCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHc----CC---C------
Q 027158           34 LEAKGLWAEAEKAYSSLLEDN----PLD----PVLHKRRVAIAKAQG-NFPTAIEWLNKYLETF----MA---D------   91 (227)
Q Consensus        34 ~~~~~~~~~A~~~~~~~l~~~----p~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~----p~---~------   91 (227)
                      ....|+.+.|..++.++-...    |+.    ...+++.|.-....+ +++.|..+++++.++-    +.   .      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            356799999999999987754    332    255677888888888 9999999999999883    21   1      


Q ss_pred             -HHHHHHHHHHHHHcccHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           92 -HDAWRELAEIYVSLQMYK---QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        92 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                       ......++.+|...+.++   +|....+.+-...|+.+..+...-.+....++   .+.+.+.+.+++..-+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~---~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD---EEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC---hhHHHHHHHHHHHhcc
Confidence             235678888898877654   55666666666678877776444455555677   7888888888777543

It is also involved in sporulation [].

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.96  Score=38.12  Aligned_cols=157  Identities=16%  Similarity=0.050  Sum_probs=107.4

Q ss_pred             CChHHHHHHHHHHHHhC------------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Q 027158            4 QCLDVAKDCIKVLQKQF------------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED------------------   53 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------   53 (227)
                      ..|.+|...|.-+....            |-+...+..++.++..+|+.+-|.....+++=.                  
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            34667777776666543            345567888999999999988887777666432                  


Q ss_pred             ---CCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHHHcCC-CHHHHHHHHHHH-HHcccHHHHHHHHHHHHhh----
Q 027158           54 ---NPLDPVLHKR---RVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIY-VSLQMYKQAAFCYEELILS----  121 (227)
Q Consensus        54 ---~p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~----  121 (227)
                         +|.+-..|..   ...-+.+.|=+..|.++++-.+.++|. +|-+...+.++| .+..+|.--+.+++..-..    
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence               2333333332   233445578899999999999999999 888777777776 4568899888888877433    


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          122 -QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       122 -~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                       -|+- .+-..+|..|...........|...+.+|+...|.
T Consensus       412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence             2332 23344455555544422367889999999999884

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.83  E-value=0.3  Score=32.27  Aligned_cols=88  Identities=15%  Similarity=0.139  Sum_probs=63.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC---CC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------cCCCHH
Q 027158           33 LLEAKGLWAEAEKAYSSLLEDN---PL---------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-------FMADHD   93 (227)
Q Consensus        33 ~~~~~~~~~~A~~~~~~~l~~~---p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~   93 (227)
                      -....|-|++|...+++++...   |.         +..++..|+..+..+|+|++++..-..++..       +.+...
T Consensus        18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk   97 (144)
T PF12968_consen   18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK   97 (144)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence            3345589999999999998862   21         2345667888899999999887777777654       444444


Q ss_pred             HH----HHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           94 AW----RELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        94 ~~----~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      .|    ++.|..+...|..++|+..|+.+-+
T Consensus        98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            44    5778889999999999999998864

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=0.17  Score=42.87  Aligned_cols=95  Identities=12%  Similarity=-0.001  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      +..-|.-.++..+|..+++.|...+.-.|.+.      .....+..||....+.+.|.+.++++-+.+|.++-.......
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            34455666778999999999999999877653      455677889999999999999999999999999988888888


Q ss_pred             HHHHcccHHHHHHHHHHHHhh
Q 027158          101 IYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~  121 (227)
                      +....|.-++|+.+.......
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            889999999999988877643

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.80  E-value=0.099  Score=46.93  Aligned_cols=96  Identities=16%  Similarity=0.067  Sum_probs=70.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---ChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQ----G---NFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      .+++...+.|++|+..|++.....|+-.   ++.+..|.....+    |   .+++|+..|++.. -.|.-|--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            4566777888889999988888887643   5666677665543    2   3556666665532 34556677888888


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      +|.++|+|++-++++.-|++..|++|.
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            899999999999999999998888875

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.80  E-value=0.079  Score=40.62  Aligned_cols=79  Identities=19%  Similarity=0.061  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158           74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  153 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  153 (227)
                      +..=+...++.++-  ....++..++..+...|+++.++..+++.+..+|.+...|..+-.+|+..|+   ...|+..|+
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~  211 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYR  211 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHH
Confidence            44444444444432  3567888899999999999999999999999999999999999999999999   888888888


Q ss_pred             HHhh
Q 027158          154 STID  157 (227)
Q Consensus       154 ~~~~  157 (227)
                      +.-+
T Consensus       212 ~l~~  215 (280)
T COG3629         212 QLKK  215 (280)
T ss_pred             HHHH
Confidence            8776

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.78  E-value=0.87  Score=37.30  Aligned_cols=130  Identities=15%  Similarity=0.093  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL-----HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      .+...|-++..++++.+|...|.++.....+.+..     +..+..--+-+++.+.-...+-..-+..|.++......|.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            34556888889999999999999998876555432     3233332333456666666666667778888888888899


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCC--C-------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPT--V-------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~--~-------------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      ..++.+.|++|++.+..-...-..  .             ...-...|.++...|.   +.++...+++.+..
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~---f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR---FSEGRAILNRIIER  157 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHH
Confidence            999999999999887766543111  1             1123456788889999   99999988887754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.78  E-value=0.21  Score=41.22  Aligned_cols=104  Identities=21%  Similarity=0.229  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      ....+..+...|-++.|+.+.        .++..   .-.+....|+.+.|.+..++     .+++..|..||.....+|
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~---rFeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFV--------TDPDH---RFELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHS--------S-HHH---HHHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhc--------CChHH---HhHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence            455666777778877777642        23333   33445678888887776653     457889999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          107 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      +++-|..+|+++-.        +..+..+|...|+   .+.-.+....+..
T Consensus       362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~---~~~L~kl~~~a~~  401 (443)
T PF04053_consen  362 NIELAEECYQKAKD--------FSGLLLLYSSTGD---REKLSKLAKIAEE  401 (443)
T ss_dssp             BHHHHHHHHHHCT---------HHHHHHHHHHCT----HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcC--------ccccHHHHHHhCC---HHHHHHHHHHHHH
Confidence            99999999988642        3445666777777   5444444444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.12  Score=39.13  Aligned_cols=72  Identities=18%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           63 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                      ++=..+...++++.|....++.+.++|.++.-+.-.|.+|.+.|.+..|++.++..+...|+++.+-...+.
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            444467778888889999999998889988888888999999999999999888888888888776544443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.72  E-value=1.1  Score=37.89  Aligned_cols=123  Identities=11%  Similarity=-0.054  Sum_probs=107.4

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYV  103 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~  103 (227)
                      ..|......-...|+++...-.|++++-........|...+......|+.+-|-..+..+.+.. |..+.....-+.+-.
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e  377 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE  377 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence            4455566677788999999999999999888999999999999999999999999899888875 566778888888888


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 027158          104 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK  150 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~  150 (227)
                      ..|++..|...+++.....|....+-...+......|+   .+.+..
T Consensus       378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~---~~~~~~  421 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN---LEDANY  421 (577)
T ss_pred             hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc---hhhhhH
Confidence            89999999999999998889988888888888999999   887774

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.70  E-value=0.23  Score=38.11  Aligned_cols=64  Identities=22%  Similarity=0.161  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                      ..++..++..+...|+++.++..+++.+..+|.+..+|..+-..|...|+...|+..|++.-..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4566778888889999999999999999999999999999999999999999999999887653

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.68  E-value=0.071  Score=40.95  Aligned_cols=62  Identities=18%  Similarity=0.181  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158           43 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  104 (227)
Q Consensus        43 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  104 (227)
                      |..+|.+|+.+.|+++..++.+|.+....|+.=.|+-+|-+++......+.+..+|...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            55667777777777777777777777777777777777777665544446666666666655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.67  E-value=0.25  Score=44.52  Aligned_cols=93  Identities=19%  Similarity=0.188  Sum_probs=74.4

Q ss_pred             CCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 027158            3 CQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAK----G---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG   72 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~----~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~   72 (227)
                      .+.|+.|+..|+++..-+|.   .-++.+..|.....+    |   .+++|+..|++... .|.-|--|...+.+|.+.|
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  566 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLG  566 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhh
Confidence            35689999999999999995   346677777766544    2   57778887777543 6667777888899999999


Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHH
Q 027158           73 NFPTAIEWLNKYLETFMADHDAWR   96 (227)
Q Consensus        73 ~~~~A~~~~~~~l~~~p~~~~~~~   96 (227)
                      ++++-++++.-+++..|++|..-.
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~  590 (932)
T PRK13184        567 EYNEEIKSLLLALKRYSQHPEISR  590 (932)
T ss_pred             hHHHHHHHHHHHHHhcCCCCccHH
Confidence            999999999999999999976433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.67  E-value=0.11  Score=32.90  Aligned_cols=27  Identities=22%  Similarity=0.172  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      ..++|.++...|+   +++|+..+++++++
T Consensus        44 ll~lA~~~~~~G~---~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRRFGH---YEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence            3444455555555   55555555555544

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.91  Score=36.61  Aligned_cols=123  Identities=14%  Similarity=0.052  Sum_probs=85.9

Q ss_pred             CCCChHHHHHHHHHHHHhCC----C-----chhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFP----E-----SKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPL-DPVLHKRRVA   66 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p----~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~-~~~~~~~l~~   66 (227)
                      +.+++.+|..+-+..+...-    .     ....++.+...+...|+...-...+...+..     +.. .....+.+-.
T Consensus       138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr  217 (493)
T KOG2581|consen  138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR  217 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence            45567777776666655321    1     2345667777778888876666666655553     222 2344556667


Q ss_pred             HHHHcCChHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 027158           67 IAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  126 (227)
Q Consensus        67 ~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  126 (227)
                      .|...+.++.|.....+..  .|+      .+...+.+|.+..-+++|..|.+++-.|+...|++.
T Consensus       218 ~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  218 NYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            8888899999988887764  232      255778899999999999999999999999999753

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.57  E-value=0.07  Score=27.12  Aligned_cols=30  Identities=20%  Similarity=0.109  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHcccHHHHHHH--HHHHHhhCC
Q 027158           94 AWRELAEIYVSLQMYKQAAFC--YEELILSQP  123 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~--~~~al~~~p  123 (227)
                      .|..+|..+...|++++|+..  |.-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            445555555555555555555  224444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.45  E-value=0.22  Score=31.47  Aligned_cols=57  Identities=25%  Similarity=0.294  Sum_probs=47.2

Q ss_pred             HHHHcCChHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           67 IAKAQGNFPTAIEWLNKYLETFMAD---------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        67 ~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      -....|++..|++.+.+.++.....         ..+..++|.+....|++++|+..+++++.+..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3567899999999999988764332         34678899999999999999999999997754

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.30  E-value=0.29  Score=39.53  Aligned_cols=89  Identities=15%  Similarity=0.075  Sum_probs=67.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--------CC-----C-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDN--------PL-----D-----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH   92 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~--------p~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~   92 (227)
                      |..++++++|..|..-|..+++..        |.     +     ..+-..+..||...++.+-|+....+.+-++|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            455566677777777777666652        11     1     12345788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           93 DAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        93 ~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      .-+..-|.++....+|.+|-.-+--+.
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876655444

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=95.19  E-value=0.85  Score=35.89  Aligned_cols=30  Identities=17%  Similarity=-0.009  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          128 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ....+|.|..++|+   ..+|.+.++...+-.|
T Consensus       277 IKRRLAMCARklGr---lrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  277 IKRRLAMCARKLGR---LREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHHhhh---HHHHHHHHHHHhhhcc
Confidence            34556666666666   6777766666655444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.17  E-value=2.2  Score=37.94  Aligned_cols=120  Identities=18%  Similarity=0.056  Sum_probs=92.6

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--D-------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-   91 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-   91 (227)
                      .+|..-...+.......++.+|..+..++-.--|.  .       ...-...|.+....|+++.|+...+.++..-|.+ 
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            46666777888888899999999998887764332  1       2334456678888999999999999999987765 


Q ss_pred             ----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC----C--HHHHHHHHHHHHHcCC
Q 027158           92 ----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT----V--PLYHLAYADVLYTLGG  141 (227)
Q Consensus        92 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~  141 (227)
                          ..+...+|.+..-.|++++|..+...+.+....    .  ..+.+..+.++..+|+
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq  552 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ  552 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence                457788999999999999999999998876322    2  2345566778888884

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.01  E-value=0.61  Score=40.65  Aligned_cols=142  Identities=15%  Similarity=0.049  Sum_probs=84.9

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      ..+.+|+.+++.+.+....+ ..+-..+.-|...|+++-|.++|.++-        ....-..+|-..|+|..|..+-.+
T Consensus       746 kew~kai~ildniqdqk~~s-~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e  816 (1636)
T KOG3616|consen  746 KEWKKAISILDNIQDQKTAS-GYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEE  816 (1636)
T ss_pred             hhhhhhHhHHHHhhhhcccc-ccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHH
Confidence            34556666655554443322 234456777788888888888776542        233455667778888887776665


Q ss_pred             HHHHcCCC-HHHHHHHHHHHHHcc-------------cHHHHHHHHHHHH----------hhCCCC-HHHHHHHHHHHHH
Q 027158           84 YLETFMAD-HDAWRELAEIYVSLQ-------------MYKQAAFCYEELI----------LSQPTV-PLYHLAYADVLYT  138 (227)
Q Consensus        84 ~l~~~p~~-~~~~~~la~~~~~~~-------------~~~~A~~~~~~al----------~~~p~~-~~~~~~la~~~~~  138 (227)
                      ..  .|.. ...|...+.-+-..|             .++.|+..|.+.-          +..|+. ...+..+|.-+..
T Consensus       817 ~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~  894 (1636)
T KOG3616|consen  817 CH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEA  894 (1636)
T ss_pred             hc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHh
Confidence            43  2332 233444444444444             4455555555422          122322 3578888999999


Q ss_pred             cCCCCcHHHHHHHHHHHhhhc
Q 027158          139 LGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       139 ~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .|+   ...|...|.++-+..
T Consensus       895 ~g~---lkaae~~flea~d~k  912 (1636)
T KOG3616|consen  895 EGD---LKAAEEHFLEAGDFK  912 (1636)
T ss_pred             ccC---hhHHHHHHHhhhhHH
Confidence            999   999998887775543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.01  E-value=0.33  Score=35.25  Aligned_cols=78  Identities=21%  Similarity=0.136  Sum_probs=58.8

Q ss_pred             HHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHcccHH
Q 027158           35 EAKGLWAEAEKAYSSLLED-NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYK  109 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~~~~~  109 (227)
                      +..-.-+.|...|-++-.. .-+++...+.+|..|. ..+.++++..+.+++++.+.    +++.+..|+.++...|+++
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            3443346676666554443 2356788888887776 66899999999999998654    4899999999999999999


Q ss_pred             HHHH
Q 027158          110 QAAF  113 (227)
Q Consensus       110 ~A~~  113 (227)
                      .|--
T Consensus       196 ~AYi  199 (203)
T PF11207_consen  196 QAYI  199 (203)
T ss_pred             hhhh
Confidence            9853

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.99  E-value=0.83  Score=36.80  Aligned_cols=126  Identities=13%  Similarity=0.134  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C---ChHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-G---NFPTAIE   79 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~---~~~~A~~   79 (227)
                      .++-+.+...++..+|++..+|..+..++.+.+  ++..-+.+++++++.+|.+..+|..+=.+.... .   ...+=++
T Consensus        91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~  170 (421)
T KOG0529|consen   91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE  170 (421)
T ss_pred             hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence            456678888999999999999999999998775  468899999999999999988876554443332 2   2567788


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH------cc------cHHHHHHHHHHHHhhCCCCHHHHHH
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVS------LQ------MYKQAAFCYEELILSQPTVPLYHLA  131 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~------~~------~~~~A~~~~~~al~~~p~~~~~~~~  131 (227)
                      +..+++..++.+-.+|.....+...      .|      -...-++.-..|+-.+|++..+|+.
T Consensus       171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            9999999999999999988777763      23      2345566777788889998877655

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.77  E-value=0.15  Score=39.21  Aligned_cols=62  Identities=13%  Similarity=0.016  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 027158            9 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA   70 (227)
Q Consensus         9 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~   70 (227)
                      |..+|.++....|++...+..+|.+....|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997655557778788777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.46  E-value=0.06  Score=25.02  Aligned_cols=19  Identities=16%  Similarity=-0.034  Sum_probs=7.7

Q ss_pred             HHHHHHHHHcccHHHHHHH
Q 027158           96 RELAEIYVSLQMYKQAAFC  114 (227)
Q Consensus        96 ~~la~~~~~~~~~~~A~~~  114 (227)
                      +.+|.++...|++++|...
T Consensus         5 ~~la~~~~~~G~~~eA~~~   23 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERL   23 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            3344444444444444333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=1  Score=36.39  Aligned_cols=127  Identities=15%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC-----C-CHHHHH
Q 027158           32 ILLEAKGLWAEAEKAYSSLLEDNP----L-----DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM-----A-DHDAWR   96 (227)
Q Consensus        32 ~~~~~~~~~~~A~~~~~~~l~~~p----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p-----~-~~~~~~   96 (227)
                      ..++.++++.+|..+-+..+..-.    .     .+..|+.+..++...|+...-..++...+....     . .+...+
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN  213 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN  213 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence            344556889999888777665311    1     135567777778888887777777766654321     1 134556


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhh--CCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           97 ELAEIYVSLQMYKQAAFCYEELILS--QPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        97 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .|-..|...+.|+.|.....++.--  ..++  ..+++.+|.+..-+++   |..|.++|.+++...|.
T Consensus       214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld---YssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD---YSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc---hhHHHHHHHHHHHhCcc
Confidence            6777888899999999887776521  1122  4567888899999999   99999999999999994

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.41  E-value=0.75  Score=39.78  Aligned_cols=57  Identities=16%  Similarity=0.162  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH----------------------HHcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYL----------------------ETFMADHDAWRELAEIYVSLQMYKQAAFCY  115 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l----------------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  115 (227)
                      .++..+|..+.....+++|.++|.+.-                      ..-|++....-.+|..+...|.-++|+++|
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence            556666666666666666666665421                      122555555555555555556555555554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.36  E-value=3.2  Score=36.07  Aligned_cols=116  Identities=19%  Similarity=0.098  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhcCCC----CHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHcCC--CH----HHHHHHHHHHHHcccH
Q 027158           40 WAEAEKAYSSLLEDNPL----DPVLHKRRVAIAK-AQGNFPTAIEWLNKYLETFMA--DH----DAWRELAEIYVSLQMY  108 (227)
Q Consensus        40 ~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~~~~  108 (227)
                      ...|+.+++.+++..+-    ...++..+|.++. ...+++.|..++++++.+...  ..    .+...++.++...+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            35577777777753222    2356778888776 678899999999988776633  22    2344667777777766


Q ss_pred             HHHHHHHHHHHhhCCC----CHHHHHHHHHH--HHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          109 KQAAFCYEELILSQPT----VPLYHLAYADV--LYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       109 ~~A~~~~~~al~~~p~----~~~~~~~la~~--~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      . |...+++.++...+    .+...+.+-.+  ....++   +..|+..++......
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d---~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKD---YNAALENLQSIAQLA  169 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHh
Confidence            6 88888888866544    23333444322  222357   888888888887765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.33  E-value=0.086  Score=24.47  Aligned_cols=22  Identities=27%  Similarity=0.052  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAY   47 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~   47 (227)
                      +...+|..+...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3445555555555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.24  E-value=0.17  Score=24.38  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHH
Q 027158           75 PTAIEWLNKYLETFMADHDAWREL   98 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~~~~~~~~l   98 (227)
                      +.+...|++++...|.++..|...
T Consensus         4 ~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        4 ERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHH
Confidence            344444444444444444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.15  E-value=3  Score=34.97  Aligned_cols=146  Identities=13%  Similarity=0.040  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-
Q 027158           10 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-   88 (227)
Q Consensus        10 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-   88 (227)
                      .-++.+++.. ..+..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++...+..+|.+++... 
T Consensus        86 eh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI  162 (711)
T COG1747          86 EHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI  162 (711)
T ss_pred             HHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence            3444555443 44566788889999887 55777888899999888888877788887766 77788888888876542 


Q ss_pred             -------------------CCCHHHHH--------------------HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           89 -------------------MADHDAWR--------------------ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        89 -------------------p~~~~~~~--------------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                                         |++.+..+                    .+-.-|....+|.+|+......++.+..+..+.
T Consensus       163 ~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar  242 (711)
T COG1747         163 PRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWAR  242 (711)
T ss_pred             chhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHH
Confidence                               33322211                    122334455789999999999999999888877


Q ss_pred             HHHHHHHHH--------------------cCCCCcHHHHHHHHHHHhhhcCC
Q 027158          130 LAYADVLYT--------------------LGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       130 ~~la~~~~~--------------------~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      -++-..+..                    -.+   +..++..|++.+..+.+
T Consensus       243 ~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rn---f~~~l~dFek~m~f~eG  291 (711)
T COG1747         243 KEIIENLRDKYRGHSQLEEYLKISNISQSGRN---FFEALNDFEKLMHFDEG  291 (711)
T ss_pred             HHHHHHHHHHhccchhHHHHHHhcchhhcccc---HHHHHHHHHHHheeccC
Confidence            776665544                    334   88999999999888775

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.06  E-value=1.4  Score=32.12  Aligned_cols=79  Identities=11%  Similarity=-0.057  Sum_probs=59.3

Q ss_pred             HHHcCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCC
Q 027158           68 AKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT----VPLYHLAYADVLYTLGGV  142 (227)
Q Consensus        68 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~  142 (227)
                      ++..-.-+.|...|-++-... -+++...+.||..|. ..+.++|+.++-+++.+.+.    ++.++..|+.+++..|+ 
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~-  193 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN-  193 (203)
T ss_pred             HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc-
Confidence            344434556666666543221 246888889988776 78899999999999987643    58999999999999999 


Q ss_pred             CcHHHHHH
Q 027158          143 DNILLAKK  150 (227)
Q Consensus       143 ~~~~~A~~  150 (227)
                        ++.|.-
T Consensus       194 --~e~AYi  199 (203)
T PF11207_consen  194 --YEQAYI  199 (203)
T ss_pred             --hhhhhh
Confidence              988853

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.99  E-value=0.13  Score=26.46  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      .+..||.+-...++|++|+.-|++++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344555555555555555555555553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.98  E-value=0.15  Score=26.20  Aligned_cols=29  Identities=31%  Similarity=0.190  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLET   87 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~   87 (227)
                      +++..+|.+....++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35667777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.91  E-value=1.8  Score=33.09  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=17.9

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAY   47 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~   47 (227)
                      .++..+..+|..+...|++.+|..++
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            46777888888888888877777665

; PDB: 3LKU_E 2WPV_G.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.84  E-value=0.52  Score=43.23  Aligned_cols=132  Identities=14%  Similarity=0.055  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHcCCHHHHHH------HHHHHHh-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------cCC
Q 027158           26 VGRLEGILLEAKGLWAEAEK------AYSSLLE-DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMA   90 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~------~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~p~   90 (227)
                      .....|......|.+.+|.+      .+.+... +.|.....+..++.++...|+.++|+.+-.++.-+        .|+
T Consensus       934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen  934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred             hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence            34455666667778887777      5553333 47888899999999999999999999998887533        244


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           91 DHDAWRELAEIYVSLQMYKQAAFCYEELILS--------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ....+.+++...+..++...|...+.++...        .|.-.....+++.++...++   ++.|+.+.+.+...+.
T Consensus      1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e---~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE---ADTALRYLESALAKNK 1088 (1236)
T ss_pred             HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH---HHHHHHHHHHHHHHHh
Confidence            5668889999999999999999999888854        34444566788888888888   9999999999998754

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.79  E-value=2.1  Score=32.83  Aligned_cols=160  Identities=14%  Similarity=0.052  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CChHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEA--------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--GNFPT   76 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--~~~~~   76 (227)
                      ..|++.-..+++.+|....++...-.+...        ..-++.-+.++..+++.+|.+..+|...-.++...  .++..
T Consensus        49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r  128 (328)
T COG5536          49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR  128 (328)
T ss_pred             HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence            356777777888888777777666555544        12345667888999999999999998888877665  56778


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHH------HHcccHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHHcCCCC---c
Q 027158           77 AIEWLNKYLETFMADHDAWRELAEIY------VSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLGGVD---N  144 (227)
Q Consensus        77 A~~~~~~~l~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~---~  144 (227)
                      -....++.++.+|.+-..|...-.+.      ..-..+....++-..++..++.|..+|...   -...+..|+..   .
T Consensus       129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~  208 (328)
T COG5536         129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY  208 (328)
T ss_pred             hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence            88889999999999987776544333      444556666777788889999999888777   33444455521   1


Q ss_pred             HHHHHHHHHHHhhhcCCCchhHH
Q 027158          145 ILLAKKYYASTIDLTGGKNTKAL  167 (227)
Q Consensus       145 ~~~A~~~~~~~~~~~~~~~~~~~  167 (227)
                      +++-+.+....+-.+|+ +..++
T Consensus       209 l~~eL~~i~~~if~~p~-~~S~w  230 (328)
T COG5536         209 LEKELEYIFDKIFTDPD-NQSVW  230 (328)
T ss_pred             HHHHHHHHHhhhhcCcc-ccchh
Confidence            45666777777777886 44443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.76  E-value=0.9  Score=27.58  Aligned_cols=48  Identities=19%  Similarity=0.179  Sum_probs=23.7

Q ss_pred             HHHcCChHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHcccHHHHHHHH
Q 027158           68 AKAQGNFPTAIEWLNKYLETFMADHDAWREL---AEIYVSLQMYKQAAFCY  115 (227)
Q Consensus        68 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~  115 (227)
                      ++...+..+|+..++++++..++.++-|..+   ..+|...|+|++.+.+.
T Consensus        16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555555555544433332   33344455555555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.72  E-value=0.46  Score=36.57  Aligned_cols=60  Identities=18%  Similarity=0.143  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           95 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ....+..|...|.+.+|+.+.++++..+|-+...+..+-.++..+|+   --.+..+|++.-+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD---~is~~khyerya~  341 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD---EISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc---chhhhhHHHHHHH
Confidence            33456778889999999999999999999999999999999999999   7777777766543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.71  E-value=0.39  Score=24.34  Aligned_cols=29  Identities=10%  Similarity=-0.059  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHcCChHHHHHH--HHHHHHHcC
Q 027158           61 HKRRVAIAKAQGNFPTAIEW--LNKYLETFM   89 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~--~~~~l~~~p   89 (227)
                      +..+|..+...|++++|+..  |.-+..++|
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            44555555555555555555  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.68  E-value=1.6  Score=36.24  Aligned_cols=76  Identities=21%  Similarity=0.004  Sum_probs=49.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  110 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~  110 (227)
                      -.+..+.|+.+.|.+..     ...+++..|..+|.....+|+++-|..+|+++-.        +..|..+|...|+-+.
T Consensus       325 FeLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~  391 (443)
T PF04053_consen  325 FELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREK  391 (443)
T ss_dssp             HHHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred             hHHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHH
Confidence            34457889999998743     3445788999999999999999999999998522        3334444555555444


Q ss_pred             HHHHHHHHH
Q 027158          111 AAFCYEELI  119 (227)
Q Consensus       111 A~~~~~~al  119 (227)
                      =..+...+.
T Consensus       392 L~kl~~~a~  400 (443)
T PF04053_consen  392 LSKLAKIAE  400 (443)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.67  E-value=0.56  Score=37.99  Aligned_cols=88  Identities=17%  Similarity=0.026  Sum_probs=68.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHc--------CCC----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158           66 AIAKAQGNFPTAIEWLNKYLETF--------MAD----------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      ..++++++|-.|..-|..++++-        |..          .-.-..|..||...++.+-|+....+.+.++|.++.
T Consensus       184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr  263 (569)
T PF15015_consen  184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR  263 (569)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence            34556666666666666666542        111          113457899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158          128 YHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus       128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      -++.-|.++..+.+   |.+|...+--+.
T Consensus       264 nHLrqAavfR~LeR---y~eAarSamia~  289 (569)
T PF15015_consen  264 NHLRQAAVFRRLER---YSEAARSAMIAD  289 (569)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            99999999999999   999887665554

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.58  E-value=0.24  Score=23.82  Aligned_cols=29  Identities=28%  Similarity=0.259  Sum_probs=17.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 027158           38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVA   66 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~   66 (227)
                      |+.+.|...|++++...|.++.+|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            34556666666666666666666655544

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.43  E-value=1.6  Score=33.03  Aligned_cols=81  Identities=21%  Similarity=0.055  Sum_probs=57.7

Q ss_pred             CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 027158           72 GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTL  139 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~  139 (227)
                      ......+.++.+++..+...      ......+|..|+..|+|++|+.+|+.+.......      ..+...+..|....
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            34556677888887766533      3456688999999999999999999997554322      34677778888888


Q ss_pred             CCCCcHHHHHHHHHHH
Q 027158          140 GGVDNILLAKKYYAST  155 (227)
Q Consensus       140 g~~~~~~~A~~~~~~~  155 (227)
                      |+   .+..+...-+.
T Consensus       232 ~~---~~~~l~~~leL  244 (247)
T PF11817_consen  232 GD---VEDYLTTSLEL  244 (247)
T ss_pred             CC---HHHHHHHHHHH
Confidence            88   76666554443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.40  E-value=3.9  Score=33.79  Aligned_cols=155  Identities=14%  Similarity=0.092  Sum_probs=108.7

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158           12 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD   91 (227)
Q Consensus        12 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~   91 (227)
                      -++.-++.+|.+...|+.+...+..+|.+++-.+.|++...-.|-.+.+|.....--....++.....+|-+++...- +
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~  108 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-N  108 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-c
Confidence            456667788999999999999999999999999999999999999999998777767777888888889998886543 3


Q ss_pred             HHHHHHHHHHHHHc-----cc----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC------CcHHHHHHHHHHHh
Q 027158           92 HDAWRELAEIYVSL-----QM----YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV------DNILLAKKYYASTI  156 (227)
Q Consensus        92 ~~~~~~la~~~~~~-----~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------~~~~~A~~~~~~~~  156 (227)
                      .+.|...-..-.+.     |+    .-+|.++.-...-.+|.....|...+..+......      ++.+.-...|.+++
T Consensus       109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral  188 (660)
T COG5107         109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL  188 (660)
T ss_pred             HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence            55665433222222     21    22333333333346788888888888776554332      23567777888888


Q ss_pred             hhcCCCchhHHH
Q 027158          157 DLTGGKNTKALF  168 (227)
Q Consensus       157 ~~~~~~~~~~~~  168 (227)
                      ..-- ++..-++
T Consensus       189 ~tP~-~nleklW  199 (660)
T COG5107         189 QTPM-GNLEKLW  199 (660)
T ss_pred             cCcc-ccHHHHH
Confidence            7543 3544443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.38  E-value=2.8  Score=32.16  Aligned_cols=49  Identities=14%  Similarity=0.014  Sum_probs=39.2

Q ss_pred             CChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 027158            4 QCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLE   52 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~   52 (227)
                      ...++|+..|+++++..|...    .++-..-.+.+..+++++-.+.|.+.+.
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            467899999999999987533    4566677888999999998888887765

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.36  E-value=1.1  Score=27.25  Aligned_cols=58  Identities=5%  Similarity=-0.103  Sum_probs=29.5

Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL---AYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      -|.-++..++.++|+..++++++..++.+.-+.   .+..+|...|+   +++++.+-..-+++
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk---yr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK---YREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            344444555566666666666655555443332   33344555555   66555554444433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.29  E-value=0.56  Score=36.10  Aligned_cols=58  Identities=16%  Similarity=0.025  Sum_probs=43.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           62 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        62 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      ...+..|...|.+.+|+++.++++.++|-+...|..+-.++...|+--.+...|++.-
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            4556677777888888888888888888888888888888888887666666665543

>PF12854 PPR_1: PPR repeat

Probab=93.05  E-value=0.35  Score=24.06  Aligned_cols=27  Identities=19%  Similarity=0.148  Sum_probs=16.4

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158           57 DPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      +...|..+...+.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            345566666666666666666666654

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.01  E-value=5.1  Score=34.05  Aligned_cols=116  Identities=12%  Similarity=0.104  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------------------
Q 027158           38 GLWAEAEKAYSSLLED------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET------------------   87 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------------------   87 (227)
                      ..|++|...|.-++..            .|-+.+.+..++.++..+|+.+-|....++++=.                  
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            4577777777766554            4666788999999999999988888887776632                  


Q ss_pred             ---cCCCHHHHH---HHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           88 ---FMADHDAWR---ELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        88 ---~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                         .|.+-..|.   ..-..+.+.|-|..|.++++-.++++|. +|.+...+-++|....+  +|.--+..++..
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar--eYqwiI~~~~~~  404 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR--EYQWIIELSNEP  404 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH--hHHHHHHHHHHH
Confidence               122222222   2233344679999999999999999998 88877777776665443  154444444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.78  E-value=6.1  Score=34.36  Aligned_cols=145  Identities=15%  Similarity=0.003  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHhCC----CchhhHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHcCChH
Q 027158            7 DVAKDCIKVLQKQFP----ESKRVGRLEGILLE-AKGLWAEAEKAYSSLLEDNPL--DP----VLHKRRVAIAKAQGNFP   75 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~--~~----~~~~~l~~~~~~~~~~~   75 (227)
                      ..|+.+++.+.+..+    ....+.+.+|.++. ...+++.|..++.+++.+...  ..    .+...++.++...+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            457888888885443    24466778888777 779999999999999887533  22    23345677777777666


Q ss_pred             HHHHHHHHHHHHcCC---CHHH-HHHH--HHHHHHcccHHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCCCC
Q 027158           76 TAIEWLNKYLETFMA---DHDA-WREL--AEIYVSLQMYKQAAFCYEELILSQ--PTVPLY----HLAYADVLYTLGGVD  143 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~---~~~~-~~~l--a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~  143 (227)
                       |...+++.++....   .... .+.+  ...+...+++..|++.++......  +.++.+    ...-+.++...+.  
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~--  194 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS--  194 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC--
Confidence             99999999887544   2221 1222  222333479999999999998765  344432    2333455556665  


Q ss_pred             cHHHHHHHHHHH
Q 027158          144 NILLAKKYYAST  155 (227)
Q Consensus       144 ~~~~A~~~~~~~  155 (227)
                       .+.+++...++
T Consensus       195 -~~d~~~~l~~~  205 (608)
T PF10345_consen  195 -PDDVLELLQRA  205 (608)
T ss_pred             -chhHHHHHHHH
Confidence             56666666655

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I

Probab=92.24  E-value=3.4  Score=30.14  Aligned_cols=63  Identities=19%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHcC
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA-IAKAQGNFPTAIEWLNKYLETFM   89 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~p   89 (227)
                      +..+-......|+|+.|-.+|--.+...+-+....-.+|. ++.+.+......++++......|
T Consensus        44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~  107 (199)
T PF04090_consen   44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP  107 (199)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence            3444455667799999999999999987777655445554 77777766666677776666555

Binding to the DNA template is dependent on the initial binding of other factors [].

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.19  E-value=12  Score=37.44  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=103.4

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CC----------
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MA----------   90 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~----------   90 (227)
                      .....|...|.+....|.++.|....-.+.+..  -+.++...|..++..|+...|+..+++.+..+ |+          
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            456788999999999999999999988888766  56788999999999999999999999999653 33          


Q ss_pred             C------HHHHHHHHHHHHHcccH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------------cCCCCcHHH---
Q 027158           91 D------HDAWRELAEIYVSLQMY--KQAAFCYEELILSQPTVPLYHLAYADVLYT------------LGGVDNILL---  147 (227)
Q Consensus        91 ~------~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~~~~---  147 (227)
                      .      ..+....+......+++  ..-+..|..+.++.|.....++.+|..|-+            .|+   +..   
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~---~~~~l~ 1822 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGR---VLSLLK 1822 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccccccc---HHHHHH
Confidence            1      11334444444455553  456788999999999776666667644332            222   444   


Q ss_pred             HHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          148 AKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       148 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      ++..|.+++..+.......+=.+...+..+
T Consensus      1823 ~~~~~~~sl~yg~~~iyqsmPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1823 AIYFFGRALYYGNQHLYQSMPRLLTLWLDI 1852 (2382)
T ss_pred             HHHHHHHHHHhcchhHHHhhhHHHHHHHhh
Confidence            566666777765531111222444445443

>PF13041 PPR_2: PPR repeat family

Probab=91.82  E-value=1.2  Score=24.12  Aligned_cols=25  Identities=16%  Similarity=0.301  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           95 WRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        95 ~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      |..+-..+.+.|++++|.++|++..
T Consensus         6 yn~li~~~~~~~~~~~a~~l~~~M~   30 (50)
T PF13041_consen    6 YNTLISGYCKAGKFEEALKLFKEMK   30 (50)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3334444444444444444444444

>PF12854 PPR_1: PPR repeat

Probab=91.60  E-value=0.65  Score=23.04  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=17.6

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 027158           91 DHDAWRELAEIYVSLQMYKQAAFCYEE  117 (227)
Q Consensus        91 ~~~~~~~la~~~~~~~~~~~A~~~~~~  117 (227)
                      +...|..+...|.+.|+.++|.++|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            445666666667777777777666654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.42  E-value=3.9  Score=29.22  Aligned_cols=134  Identities=16%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCch--hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H--HHHHHHHHHHHHcCChHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESK--RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--P--VLHKRRVAIAKAQGNFPT   76 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~--~~~~~l~~~~~~~~~~~~   76 (227)
                      .+..++|+.-|..+-+..-.+.  -+.+..+.+....|+...|+..|..+-...|.-  .  .+...-+.++...|.|+.
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d  150 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD  150 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence            3567788888888776654332  234556778888899999999999887765421  1  233444556777888888


Q ss_pred             HHHHHHHHH-HHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           77 AIEWLNKYL-ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        77 A~~~~~~~l-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      .....+..- .-+|--..+.-.||....+.|++..|..+|..... +.+.|....+.+.+..
T Consensus       151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            666655432 12333355677888899999999999999988776 5555666666666554

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.29  E-value=1.1  Score=30.68  Aligned_cols=52  Identities=25%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ...+.....+...+..|++..|..+...++..+|++..+....+.++..+|.
T Consensus        68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            3456677778888888999999999999999999999999999988888875

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.24  E-value=4.8  Score=29.92  Aligned_cols=56  Identities=21%  Similarity=0.118  Sum_probs=40.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD   57 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~   57 (227)
                      +.+...+++...+.-++..|.+......+-..+.-.|+|++|...++-+-...|++
T Consensus        13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            34566777777777777777777777777777777777777777777777776665

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=91.14  E-value=2.2  Score=34.37  Aligned_cols=45  Identities=18%  Similarity=0.110  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158           40 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY   84 (227)
Q Consensus        40 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   84 (227)
                      .-+|+.+++.++...|.+......+..+|...|-.+.|...|...
T Consensus       199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            457888888889999999999989999999999999998888763

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=90.96  E-value=0.48  Score=37.34  Aligned_cols=99  Identities=17%  Similarity=0.030  Sum_probs=51.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCC---CC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158           30 EGILLEAKGLWAEAEKAYSSLLEDNP---LD----------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA   90 (227)
Q Consensus        30 ~a~~~~~~~~~~~A~~~~~~~l~~~p---~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~   90 (227)
                      .+...+..++++.|..-|.+++....   .+                .....+++.+-+..+.+..|+..-..++..+++
T Consensus       228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s  307 (372)
T KOG0546|consen  228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS  307 (372)
T ss_pred             cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence            34557778888888888888776421   00                012223334444444444444444444444444


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           91 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      ...+++..+..+....++++|+..+..+....|++...
T Consensus       308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i  345 (372)
T KOG0546|consen  308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI  345 (372)
T ss_pred             hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence            45555555555555555555555555555555554443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.92  E-value=0.66  Score=24.73  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=13.7

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHH
Q 027158           96 RELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        96 ~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      +.+|..|...|+.+.|...+++++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            345555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.82  E-value=9.6  Score=37.95  Aligned_cols=124  Identities=15%  Similarity=0.017  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CC----------
Q 027158           56 LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PT----------  124 (227)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~----------  124 (227)
                      ....+|...|.+....|+++.|...+-.+.+..  -+.++...|.+....|+-..|+..+++.+..+ |+          
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            346899999999999999999999999988777  57899999999999999999999999999543 22          


Q ss_pred             C------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          125 V------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       125 ~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      .      ..+.+.++......|+ ..-..-+.+|..+.+..|. +...++.++.-+..+....+.
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~e-we~~hy~l~~yy~kll~~~~~ 1808 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPE-WEDKHYHLGKYYDKLLEDYKS 1808 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHccc-ccCceeeHHHHHHHHhhhhhc
Confidence            1      1244555555556666 2245678899999999995 666667777666666554443

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=90.77  E-value=0.79  Score=34.19  Aligned_cols=33  Identities=3%  Similarity=0.036  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHH---------HcccHHHHHHHHHHHHhhCCCC
Q 027158           93 DAWRELAEIYV---------SLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        93 ~~~~~la~~~~---------~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      ..+-..|..+.         ..++...|+.++++|+.++|..
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            35556666663         4467889999999999998865

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.67  E-value=4.3  Score=32.99  Aligned_cols=16  Identities=13%  Similarity=-0.010  Sum_probs=9.6

Q ss_pred             cccHHHHHHHHHHHHh
Q 027158          105 LQMYKQAAFCYEELIL  120 (227)
Q Consensus       105 ~~~~~~A~~~~~~al~  120 (227)
                      .|+|+.|+..+=++++
T Consensus       254 ~gryddAvarlYR~lE  269 (379)
T PF09670_consen  254 QGRYDDAVARLYRALE  269 (379)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            4566666666655554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.47  E-value=4.5  Score=30.66  Aligned_cols=80  Identities=13%  Similarity=0.029  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHccc
Q 027158           40 WAEAEKAYSSLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM  107 (227)
Q Consensus        40 ~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~  107 (227)
                      ....++.+.+++.....      ...+...+|.-|+..|++++|..+|+.+.......      ......+..|+...|+
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~  233 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD  233 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            34556777777665332      13556788999999999999999999997654432      4567788889999999


Q ss_pred             HHHHHHHHHHHH
Q 027158          108 YKQAAFCYEELI  119 (227)
Q Consensus       108 ~~~A~~~~~~al  119 (227)
                      .+..+.+.-+.+
T Consensus       234 ~~~~l~~~leLl  245 (247)
T PF11817_consen  234 VEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHh
Confidence            988887765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.38  E-value=5.3  Score=32.64  Aligned_cols=60  Identities=13%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYL--------ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      ...+..++.-.|++..|++.++-.-        ...+-+...++.+|.+|+.+++|.+|+..|...+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667788999999999887531        11233456789999999999999999999999874

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=90.23  E-value=8  Score=30.71  Aligned_cols=152  Identities=18%  Similarity=0.123  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc--------------------------CCHHHHHHHHHHHHhcCC-CCH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--------------------------GLWAEAEKAYSSLLEDNP-LDP   58 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------------------~~~~~A~~~~~~~l~~~p-~~~   58 (227)
                      -++|+.+-+-+....|..|+++-..+...++.                          +-.+++...+.+++.... .-.
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY  291 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY  291 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence            36788888888999999999888777766544                          235677788888887643 222


Q ss_pred             HHHHHHHHHHHH-----cCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHH
Q 027158           59 VLHKRRVAIAKA-----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLA  131 (227)
Q Consensus        59 ~~~~~l~~~~~~-----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~  131 (227)
                      ..--.++.++-.     .-+|..-..+|.....+.| +|..-.|.+.......-.+.++...+.....  -..+..++..
T Consensus       292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~  370 (415)
T COG4941         292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAA  370 (415)
T ss_pred             HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHH
Confidence            222333333332     2356666666666666665 4555667777777777778888887776654  2345667888


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          132 YADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       132 la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .|..+.++|.   .++|...|.+++.+.++
T Consensus       371 RadlL~rLgr---~~eAr~aydrAi~La~~  397 (415)
T COG4941         371 RADLLARLGR---VEEARAAYDRAIALARN  397 (415)
T ss_pred             HHHHHHHhCC---hHHHHHHHHHHHHhcCC
Confidence            9999999999   99999999999999885

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=89.63  E-value=7.8  Score=29.70  Aligned_cols=140  Identities=16%  Similarity=0.109  Sum_probs=76.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCChH-
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQGNFP-   75 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~-   75 (227)
                      ..++|++|++++-+.              +..+...|++..|.++..-.++.     .|.+......++.+....+.-+ 
T Consensus         2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p   67 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP   67 (260)
T ss_dssp             HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred             ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence            356777777766555              44455555555554444333332     2334444456666665554322 


Q ss_pred             HHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH----------------HhhCCCCHHHHHHHH
Q 027158           76 TAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEEL----------------ILSQPTVPLYHLAYA  133 (227)
Q Consensus        76 ~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~la  133 (227)
                      +-..+.+++++..      -.++..+..+|..+.+.|++.+|...|-..                ....|.....+...|
T Consensus        68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra  147 (260)
T PF04190_consen   68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA  147 (260)
T ss_dssp             THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            3445555555544      135788999999999999888886655211                133455555555555


Q ss_pred             HH-HHHcCCCCcHHHHHHHHHHHhhh
Q 027158          134 DV-LYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       134 ~~-~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      .+ |...|+   ...|...+....+.
T Consensus       148 VL~yL~l~n---~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  148 VLQYLCLGN---LRDANELFDTFTSK  170 (260)
T ss_dssp             HHHHHHTTB---HHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC---HHHHHHHHHHHHHH
Confidence            44 555678   88888877666655

; PDB: 3LKU_E 2WPV_G.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=89.43  E-value=7.6  Score=29.29  Aligned_cols=48  Identities=29%  Similarity=0.315  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhh
Q 027158          108 YKQAAFCYEELIL-----SQPTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       108 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~~~~~  158 (227)
                      .+.|...|++|+.     +.|.+|.   ...+.+..++. +|+   .++|+...+++++.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~---~~~A~~ia~~afd~  198 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND---PEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence            4778888888884     5677775   34556665544 788   99998888887764

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=89.30  E-value=9.6  Score=30.32  Aligned_cols=158  Identities=16%  Similarity=0.069  Sum_probs=99.2

Q ss_pred             CCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH--HHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVL--HKRRVAIA   68 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~--~~~l~~~~   68 (227)
                      ++++|.+|+.+...++....      .-..++..-+..|....+..+|...+..+-..     .|....+  =..-|..+
T Consensus       140 d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlh  219 (411)
T KOG1463|consen  140 DTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILH  219 (411)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhcccee
Confidence            56788888888777765422      23456677788888888888887777665443     2222222  12334556


Q ss_pred             HHcCChHHHHHHHHHHHHHcCC---CHHHHHHH---HHHHHHcccHHH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           69 KAQGNFPTAIEWLNKYLETFMA---DHDAWREL---AEIYVSLQMYKQ--AAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l---a~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      ....+|..|..+|-++++-+..   +..+...|   -.+-...+..++  ++-.-..+++....+..++...|.++....
T Consensus       220 a~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRS  299 (411)
T KOG1463|consen  220 AAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRS  299 (411)
T ss_pred             ecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCc
Confidence            6667899999999888875432   23333322   222233344443  444445666766777788888888776533


Q ss_pred             CCCcHHHHHHHHHHHhhhcC
Q 027158          141 GVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~  160 (227)
                       ..+|+.|+..|..-+..+|
T Consensus       300 -LkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  300 -LKDFEKALADYKKELAEDP  318 (411)
T ss_pred             -HHHHHHHHHHhHHHHhcCh
Confidence             2238999999988888777

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=89.19  E-value=8.7  Score=29.69  Aligned_cols=109  Identities=14%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHH--HHHcCC----hHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158           32 ILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKRRVAI--AKAQGN----FPTAIEWLNKYLETFMADHDAWRELAEI  101 (227)
Q Consensus        32 ~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~--~~~~~~----~~~A~~~~~~~l~~~p~~~~~~~~la~~  101 (227)
                      ..+...++|++=...+.+......+    ... |......  ......    .......++..++..|++..++...|..
T Consensus         8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~   86 (277)
T PF13226_consen    8 RELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY   86 (277)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            3445567777766666666543221    111 1111111  111111    1135666777777788877777777776


Q ss_pred             HHHc----------------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158          102 YVSL----------------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus       102 ~~~~----------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      +...                      .-.+.|...+.+|+.++|....+...+-.+-...|.
T Consensus        87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge  148 (277)
T PF13226_consen   87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE  148 (277)
T ss_pred             HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence            6654                      124667777777778888877777666666666665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.93  E-value=2.8  Score=36.51  Aligned_cols=118  Identities=19%  Similarity=0.094  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------cCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLE----------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~----------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .++..+|..+.....|++|.++|...-.                      .-|++...+-.+|.++.+.|.-++|.+.|-
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence            5678888888888999999888776522                      246777777888888888888888888776


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      +.  ..|.   +-   -..+...++|.+|+++.++--  -|+-.......+.-+..-++   .-+|++.++++
T Consensus       877 r~--s~pk---aA---v~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~---~~eaIe~~Rka  936 (1189)
T KOG2041|consen  877 RR--SLPK---AA---VHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADAN---HMEAIEKDRKA  936 (1189)
T ss_pred             hc--cCcH---HH---HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcc---hHHHHHHhhhc
Confidence            53  1222   11   133456678888887765531  23323333333444455555   66777766665

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=88.25  E-value=6.9  Score=34.54  Aligned_cols=17  Identities=12%  Similarity=-0.126  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHhhhcCC
Q 027158          145 ILLAKKYYASTIDLTGG  161 (227)
Q Consensus       145 ~~~A~~~~~~~~~~~~~  161 (227)
                      +.+|+..-+...++.|.
T Consensus       382 ~~kaiqAae~mfKLk~P  398 (1226)
T KOG4279|consen  382 YQKAIQAAEMMFKLKPP  398 (1226)
T ss_pred             HHHHHHHHHHHhccCCc
Confidence            66666666666666664

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.21  E-value=1.4  Score=23.47  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .+.+|..|..+|+   .+.|...+++++...
T Consensus         2 kLdLA~ayie~Gd---~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         2 KLDLARAYIEMGD---LEGARELLEEVIEEG   29 (44)
T ss_pred             chHHHHHHHHcCC---hHHHHHHHHHHHHcC
Confidence            3679999999999   999999999999643

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.21  E-value=5.4  Score=30.72  Aligned_cols=129  Identities=15%  Similarity=0.131  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCChHHHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA------KAQGNFPTAI   78 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~------~~~~~~~~A~   78 (227)
                      +.-+..+..++..+|.+-.+|...-.++...  ..+..-....++.+..+|.+..+|...-.+.      ..-..+..-.
T Consensus        91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~  170 (328)
T COG5536          91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL  170 (328)
T ss_pred             hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence            3445678888889999988888887777666  6788888889999999999887775444433      2223344445


Q ss_pred             HHHHHHHHHcCCCHHHHHHH---HHHHHHccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158           79 EWLNKYLETFMADHDAWREL---AEIYVSLQM------YKQAAFCYEELILSQPTVPLYHLAYADV  135 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~  135 (227)
                      ++-..++..++.+..+|...   -...+..|+      +++=+++.-.++-.+|++..+|..+-.+
T Consensus       171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~  236 (328)
T COG5536         171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV  236 (328)
T ss_pred             HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence            66666788899999999877   333333443      5666777777788899887776655443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=87.86  E-value=6.6  Score=26.77  Aligned_cols=80  Identities=15%  Similarity=0.040  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158           38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVA-IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE  116 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  116 (227)
                      |+...-+.+|-..-.   .  .-|..+|. ....+|+-++-...++...+-...+|.....+|.+|.+.|+..+|-+++.
T Consensus        70 ~NlKrVi~C~~~~n~---~--se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~  144 (161)
T PF09205_consen   70 GNLKRVIECYAKRNK---L--SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLK  144 (161)
T ss_dssp             S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             cchHHHHHHHHHhcc---h--HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            555555555543221   1  12334444 55667777777777777776666678888888999999999888888888


Q ss_pred             HHHhhC
Q 027158          117 ELILSQ  122 (227)
Q Consensus       117 ~al~~~  122 (227)
                      +|-+..
T Consensus       145 ~ACekG  150 (161)
T PF09205_consen  145 EACEKG  150 (161)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            887543

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=87.67  E-value=20  Score=32.02  Aligned_cols=120  Identities=10%  Similarity=0.043  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---cccHHHHHHH
Q 027158           38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFC  114 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~~~~~~A~~~  114 (227)
                      +.-++-+.-++.-+..++.+...+..|..+++..|++++....-.++.++.|.++..|..-..-...   .+.-.++...
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL  172 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence            3444455566666666777777777788888888888877777777777788887777655443322   2566677777


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHhhh
Q 027158          115 YEELILSQPTVPLYHLAYADVLYTLGG----VDNILLAKKYYASTIDL  158 (227)
Q Consensus       115 ~~~al~~~p~~~~~~~~la~~~~~~g~----~~~~~~A~~~~~~~~~~  158 (227)
                      |++++. +-+++..|...+..+...++    .++++.-...|.+++..
T Consensus       173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s  219 (881)
T KOG0128|consen  173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS  219 (881)
T ss_pred             HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence            777773 33344455555544443332    12256666666666653

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=87.62  E-value=1.2  Score=20.93  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=9.1

Q ss_pred             HHHHHHHHcccHHHHHHHHHH
Q 027158           97 ELAEIYVSLQMYKQAAFCYEE  117 (227)
Q Consensus        97 ~la~~~~~~~~~~~A~~~~~~  117 (227)
                      .+-..|.+.|++++|...|++
T Consensus         5 ~li~~~~~~~~~~~a~~~~~~   25 (31)
T PF01535_consen    5 SLISGYCKMGQFEEALEVFDE   25 (31)
T ss_pred             HHHHHHHccchHHHHHHHHHH
Confidence            333444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13041 PPR_2: PPR repeat family

Probab=87.28  E-value=3.2  Score=22.39  Aligned_cols=44  Identities=7%  Similarity=-0.154  Sum_probs=32.9

Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHH
Q 027158          125 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC  171 (227)
Q Consensus       125 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  171 (227)
                      +...+..+-..+.+.|+   +++|.+.|++..+..-.++...+..+.
T Consensus         2 ~~~~yn~li~~~~~~~~---~~~a~~l~~~M~~~g~~P~~~Ty~~li   45 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGK---FEEALKLFKEMKKRGIKPDSYTYNILI   45 (50)
T ss_pred             chHHHHHHHHHHHHCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            34567788899999999   999999999999875433554444443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=87.16  E-value=7.4  Score=26.52  Aligned_cols=80  Identities=23%  Similarity=0.249  Sum_probs=51.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 027158           72 GNFPTAIEWLNKYLETFMADHDAWRELA-EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK  150 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~  150 (227)
                      |+....+.++-..    ....+ |..+| .....+|+-++-...+....+-...+|..+..+|.+|.+.|+   ..+|-+
T Consensus        70 ~NlKrVi~C~~~~----n~~se-~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~---~r~~~e  141 (161)
T PF09205_consen   70 GNLKRVIECYAKR----NKLSE-YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGN---TREANE  141 (161)
T ss_dssp             S-THHHHHHHHHT----T---H-HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT----HHHHHH
T ss_pred             cchHHHHHHHHHh----cchHH-HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcc---hhhHHH
Confidence            4556666665542    22222 33333 445677888888888888887667789999999999999999   999999


Q ss_pred             HHHHHhhhc
Q 027158          151 YYASTIDLT  159 (227)
Q Consensus       151 ~~~~~~~~~  159 (227)
                      .++++-+..
T Consensus       142 ll~~ACekG  150 (161)
T PF09205_consen  142 LLKEACEKG  150 (161)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999998764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.06  E-value=7.6  Score=34.31  Aligned_cols=16  Identities=19%  Similarity=0.281  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHhhCC
Q 027158          108 YKQAAFCYEELILSQP  123 (227)
Q Consensus       108 ~~~A~~~~~~al~~~p  123 (227)
                      .+.|+++|+++++..|
T Consensus       303 ~~~a~~WyrkaFeveP  318 (1226)
T KOG4279|consen  303 LNHAIEWYRKAFEVEP  318 (1226)
T ss_pred             HHHHHHHHHHHhccCc
Confidence            3444444444444444

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.99  E-value=11  Score=28.18  Aligned_cols=61  Identities=15%  Similarity=0.039  Sum_probs=54.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 027158           32 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH   92 (227)
Q Consensus        32 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~   92 (227)
                      ..+...+...+|+...+.-++..|.+......+..+++-.|++++|..-++-+-++.|++.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3456678899999999999999999999999999999999999999999999999999874

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.96  E-value=15  Score=29.89  Aligned_cols=62  Identities=19%  Similarity=0.064  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHH--HHHHcCChHHHHHHHHHHHHHc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVA--IAKAQGNFPTAIEWLNKYLETF   88 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~--~~~~~~~~~~A~~~~~~~l~~~   88 (227)
                      ....+..++..++|..|...+..+...-|...  ..+..+..  .++..-++.+|...++..+...
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~  199 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD  199 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            34566778899999999999999998634333  34444444  4456778999999999987653

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.78  E-value=13  Score=28.79  Aligned_cols=117  Identities=12%  Similarity=0.081  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHc-----CCCHH-HHHHHHHHHHHccc
Q 027158           38 GLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLETF-----MADHD-AWRELAEIYVSLQM  107 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~-~~~~la~~~~~~~~  107 (227)
                      .++++|+..|++++++.|.-.    .++..+..+.+++|++++-+..|.+.+..-     .+..+ ....+-..-....+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            589999999999999987653    567778889999999999999999877532     11111 11222222222333


Q ss_pred             HHHHHHHHHHHHhh--CCCCHH----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          108 YKQAAFCYEELILS--QPTVPL----YHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       108 ~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      .+--..+|+..+..  +..+..    ....+|.+++..|+   |.+-...+++.-.
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e---~~kl~KIlkqLh~  173 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE---YTKLQKILKQLHQ  173 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH---HHHHHHHHHHHHH
Confidence            33334444444321  112222    34568888988888   6665555555443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=86.72  E-value=18  Score=30.59  Aligned_cols=98  Identities=15%  Similarity=-0.005  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           55 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        55 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                      |-+...+..+..++.....+.-....+.+.+... .+..+++.++.+|... ..++-...+++.++.+=++...-..++.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            3333344444444444444555555556655543 4556666666666666 4455556666666666555555556665


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      .|.. ++   -..+..+|.+++..
T Consensus       141 ~yEk-ik---~sk~a~~f~Ka~yr  160 (711)
T COG1747         141 KYEK-IK---KSKAAEFFGKALYR  160 (711)
T ss_pred             HHHH-hc---hhhHHHHHHHHHHH
Confidence            5554 44   55556666555543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.55  E-value=8  Score=33.22  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=52.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc
Q 027158           28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  107 (227)
Q Consensus        28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~  107 (227)
                      ...+..+..+|-.++|+       ...++..    ..-.+..+.|+++.|..+..+     .++..-|..||.+....++
T Consensus       618 t~va~Fle~~g~~e~AL-------~~s~D~d----~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~  681 (794)
T KOG0276|consen  618 TKVAHFLESQGMKEQAL-------ELSTDPD----QRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE  681 (794)
T ss_pred             hhHHhHhhhccchHhhh-------hcCCChh----hhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc
Confidence            33445555555555554       3333321    233455677888887776554     4677889999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027158          108 YKQAAFCYEELILS  121 (227)
Q Consensus       108 ~~~A~~~~~~al~~  121 (227)
                      +..|.+||.++...
T Consensus       682 l~lA~EC~~~a~d~  695 (794)
T KOG0276|consen  682 LPLASECFLRARDL  695 (794)
T ss_pred             chhHHHHHHhhcch
Confidence            99999999988743

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.04  E-value=16  Score=29.16  Aligned_cols=112  Identities=15%  Similarity=-0.057  Sum_probs=72.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC------------------
Q 027158           28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM------------------   89 (227)
Q Consensus        28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p------------------   89 (227)
                      ..+.....+..+..+-++....+++++|.-..++..++.-...  -..+|...|+++++...                  
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence            3444555566677777777788888888877777666653222  24566666666654311                  


Q ss_pred             -----CC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q 027158           90 -----AD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGG  141 (227)
Q Consensus        90 -----~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  141 (227)
                           .+  ...-..|+.|..++|+..+|++.++...+-.|-.  ..++-++-..+..+.-
T Consensus       266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA  326 (556)
T KOG3807|consen  266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA  326 (556)
T ss_pred             hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence                 11  1234578999999999999999999998877732  2344455555554444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.01  E-value=25  Score=31.39  Aligned_cols=46  Identities=20%  Similarity=0.145  Sum_probs=33.4

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAY   47 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~   47 (227)
                      ++.|+|+.|...++.. ...|+....|..++......|+.--|..+|
T Consensus       455 id~~df~ra~afles~-~~~~da~amw~~laelale~~nl~iaercf  500 (1636)
T KOG3616|consen  455 IDDGDFDRATAFLESL-EMGPDAEAMWIRLAELALEAGNLFIAERCF  500 (1636)
T ss_pred             cccCchHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence            4678999998777654 677888888888887766666655555444

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=85.71  E-value=8  Score=31.22  Aligned_cols=68  Identities=21%  Similarity=0.130  Sum_probs=50.8

Q ss_pred             HhcCCCCHHHHHHHHH---HHHHcC---ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158           51 LEDNPLDPVLHKRRVA---IAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  118 (227)
Q Consensus        51 l~~~p~~~~~~~~l~~---~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  118 (227)
                      .+..|.+..+....-.   .+...+   ..-+|+.+++.++..+|.+......+..+|...|-.+.|...|...
T Consensus       170 te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  170 TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            4556665544332222   223333   3558999999999999999999999999999999999999998653

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.68  E-value=17  Score=30.81  Aligned_cols=93  Identities=15%  Similarity=0.128  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKY   84 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~   84 (227)
                      ....+.+.......|+.+....+.+..+...|+.+.|+..++..++..-.  ..-.++.+|.++..+.+|..|-..+...
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L  329 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL  329 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34456666777788999988899999999999988888888888871111  1234567888888888999999999888


Q ss_pred             HHHcCCCHHHHHHHH
Q 027158           85 LETFMADHDAWRELA   99 (227)
Q Consensus        85 l~~~p~~~~~~~~la   99 (227)
                      .+...-+--.|..++
T Consensus       330 ~desdWS~a~Y~Yfa  344 (546)
T KOG3783|consen  330 RDESDWSHAFYTYFA  344 (546)
T ss_pred             HhhhhhhHHHHHHHH
Confidence            877654444444444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.63  E-value=7.5  Score=31.81  Aligned_cols=61  Identities=13%  Similarity=-0.059  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELI--------LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      +...|..++.-.|+|..|++.++..=        ...+-+...++.+|-+|..+++   |.+|++.|..++-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrR---Y~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRR---YADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            34456677788899999999876532        1122345578999999999999   9999999988763

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.15  E-value=13  Score=30.36  Aligned_cols=95  Identities=16%  Similarity=0.036  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-------C-CCHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-------M-ADHD   93 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-------p-~~~~   93 (227)
                      .++.-+|.-|...|+.+.|+..|.++-....+.   ...+.++..+-+..|+|-....+..++...-       + -.+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            456667888888899999999998866554332   3556677777777888877777766665431       0 1133


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      +.+.-|.+.+..++|..|..+|-.+.
T Consensus       231 l~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  231 LKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            55666667777778888888876554

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=85.10  E-value=16  Score=28.47  Aligned_cols=152  Identities=13%  Similarity=0.043  Sum_probs=95.0

Q ss_pred             CCChHHHHHHHHHHHHhCC--------CchhhHHHHHHHHHHcCCHHHHHHH---HHHHHhc--CCCCHHHHHHHHHHH-
Q 027158            3 CQCLDVAKDCIKVLQKQFP--------ESKRVGRLEGILLEAKGLWAEAEKA---YSSLLED--NPLDPVLHKRRVAIA-   68 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~---~~~~l~~--~p~~~~~~~~l~~~~-   68 (227)
                      .+++++|+..|.+++....        ........++.+|...|++..--+.   .+.++..  .|....+...+...+ 
T Consensus        16 ~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~   95 (421)
T COG5159          16 SNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFP   95 (421)
T ss_pred             hhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcC
Confidence            4678899999999988742        1224456788889888887654333   3333332  233333333333322 


Q ss_pred             HHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh----hC--CCCHHHHHHHHHHH
Q 027158           69 KAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL----SQ--PTVPLYHLAYADVL  136 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~  136 (227)
                      .....++.-+..+...++.....      ...-+.++.+++..|+|.+|+......+.    .+  |.-...+..-..+|
T Consensus        96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvy  175 (421)
T COG5159          96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVY  175 (421)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHH
Confidence            22345666666666666654322      22345678889999999999998877763    22  33345677778889


Q ss_pred             HHcCCCCcHHHHHHHHHHHhh
Q 027158          137 YTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      +...+   ..++...+..+..
T Consensus       176 h~irn---v~KskaSLTaArt  193 (421)
T COG5159         176 HEIRN---VSKSKASLTAART  193 (421)
T ss_pred             HHHHh---hhhhhhHHHHHHH
Confidence            98888   7777766665543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=84.40  E-value=2.9  Score=19.96  Aligned_cols=24  Identities=13%  Similarity=0.153  Sum_probs=11.4

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHH
Q 027158           96 RELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        96 ~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      ..+-..|.+.|++++|..+|.+..
T Consensus         4 n~li~~~~~~~~~~~a~~~~~~M~   27 (35)
T TIGR00756         4 NTLIDGLCKAGRVEEALELFKEML   27 (35)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
Confidence            334444445555555555554443

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=84.17  E-value=8.7  Score=26.41  Aligned_cols=52  Identities=19%  Similarity=0.112  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  109 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~  109 (227)
                      .+.....+.-.+..|++.-|.++...++..+|++..+....+.++...|.-.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            4555677777888999999999999999999999998888888887776543

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=83.75  E-value=28  Score=30.08  Aligned_cols=76  Identities=22%  Similarity=0.162  Sum_probs=38.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 027158           73 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY  152 (227)
Q Consensus        73 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~  152 (227)
                      ..+.+....+..+.-...++.....-+..+-..+..++|-.+|++.+..+|+  ..+...|..+++.|-   ...|...+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~   97 (578)
T PRK15490         23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGL---AKDAQLIL   97 (578)
T ss_pred             hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhh---hhHHHHHH
Confidence            3444444444433333333444444555555555666666666666655555  444455555555555   55555444


Q ss_pred             H
Q 027158          153 A  153 (227)
Q Consensus       153 ~  153 (227)
                      .
T Consensus        98 ~   98 (578)
T PRK15490         98 K   98 (578)
T ss_pred             H
Confidence            4

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=83.75  E-value=14  Score=26.74  Aligned_cols=132  Identities=14%  Similarity=0.028  Sum_probs=66.7

Q ss_pred             chhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHcCCCHHHHH
Q 027158           23 SKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-----QGNFPTAIEWLNKYLETFMADHDAWR   96 (227)
Q Consensus        23 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~l~~~p~~~~~~~   96 (227)
                      .|..-..+|..+.. +.++++|..+|..--..+. .+...+.+|..++.     .++...|+..+..+..  -+++.+..
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~  109 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR  109 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence            44455555555443 3566666666665544332 23344455554332     2356666666666544  34556666


Q ss_pred             HHHHHHHHc-----cc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCC----------CcHHHH
Q 027158           97 ELAEIYVSL-----QM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTL-----------GGV----------DNILLA  148 (227)
Q Consensus        97 ~la~~~~~~-----~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~----------~~~~~A  148 (227)
                      .+|.+...-     ++  .++|.+++.++-.+.  +..+.+.|.-.+...           |.+          .+.+.|
T Consensus       110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka  187 (248)
T KOG4014|consen  110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA  187 (248)
T ss_pred             hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence            666555432     22  456666666664433  333334443333322           111          236677


Q ss_pred             HHHHHHHhhhc
Q 027158          149 KKYYASTIDLT  159 (227)
Q Consensus       149 ~~~~~~~~~~~  159 (227)
                      ..+--++-+++
T Consensus       188 ~qfa~kACel~  198 (248)
T KOG4014|consen  188 LQFAIKACELD  198 (248)
T ss_pred             HHHHHHHHhcC
Confidence            77666666664

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.46  E-value=13  Score=33.28  Aligned_cols=30  Identities=27%  Similarity=0.267  Sum_probs=25.4

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLED   53 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~   53 (227)
                      ..++.-.|..++..|++++|...|-+.+..
T Consensus       368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            356677789999999999999999998874

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.05  E-value=40  Score=31.39  Aligned_cols=80  Identities=16%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHh
Q 027158           90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG  169 (227)
Q Consensus        90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  169 (227)
                      +.+..|..+|.+....|...+|++.|-+|     ++|..+...-.+....|.   |++-+.++.-+.+....  +..--.
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~~E--~~id~e 1171 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKVRE--PYIDSE 1171 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhhcC--ccchHH
Confidence            45778999999999999999998888554     567777777888888888   99888888877765432  223334


Q ss_pred             HHHHHHHHHh
Q 027158          170 ICLCSSAIAQ  179 (227)
Q Consensus       170 l~~~~~~~~~  179 (227)
                      ++.++.+.++
T Consensus      1172 Li~AyAkt~r 1181 (1666)
T KOG0985|consen 1172 LIFAYAKTNR 1181 (1666)
T ss_pred             HHHHHHHhch
Confidence            4555554444

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.00  E-value=7.7  Score=28.05  Aligned_cols=49  Identities=18%  Similarity=0.181  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           75 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      +..++..++.+...| ++..+..++.++...|+.++|....+++....|.
T Consensus       128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            344555566666666 5677777777777777777777777777777773

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=82.77  E-value=1.5  Score=34.78  Aligned_cols=80  Identities=20%  Similarity=0.047  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      ...++.+-...+.+..|+.....++..++....+++.++..+....++++|++.+..+....|++....-.+...-....
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK  357 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence            34466777788899999988888888888889999999999999999999999999999999999877666555544433

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=82.76  E-value=6.6  Score=29.43  Aligned_cols=95  Identities=18%  Similarity=0.079  Sum_probs=51.7

Q ss_pred             HHHHcCChHHHHHHHHHHHHHcCCCHH------------HHHHHHHHHHHcccH-HHH-HHHHHHHHhh--CCCCHH--H
Q 027158           67 IAKAQGNFPTAIEWLNKYLETFMADHD------------AWRELAEIYVSLQMY-KQA-AFCYEELILS--QPTVPL--Y  128 (227)
Q Consensus        67 ~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~~la~~~~~~~~~-~~A-~~~~~~al~~--~p~~~~--~  128 (227)
                      ..+..|+++.|+.+..-+++.+-.-|+            -...-+......|.. +-. ...+......  -|+...  .
T Consensus        92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl  171 (230)
T PHA02537         92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL  171 (230)
T ss_pred             eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence            345678999999999999986533222            122223333344442 111 1222222211  133333  3


Q ss_pred             HHHHHHHHHHc------CCCCcHHHHHHHHHHHhhhcCC
Q 027158          129 HLAYADVLYTL------GGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       129 ~~~la~~~~~~------g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +...|..+...      ++.+....|+.+++++++++|.
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k  210 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK  210 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence            44555555321      2333388999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.03  E-value=33  Score=29.74  Aligned_cols=69  Identities=13%  Similarity=-0.014  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158            9 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus         9 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      ...+.++++...++..    ..-.+..+.|+++.|..+..+     .++..=|..||......|++..|.++|.++..
T Consensus       626 ~~g~~e~AL~~s~D~d----~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  626 SQGMKEQALELSTDPD----QRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             hccchHhhhhcCCChh----hhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            3444555556555322    223445677888888775443     45677799999999999999999999998754

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.02  E-value=4.4  Score=24.43  Aligned_cols=15  Identities=20%  Similarity=0.093  Sum_probs=8.0

Q ss_pred             ccHHHHHHHHHHHHh
Q 027158          106 QMYKQAAFCYEELIL  120 (227)
Q Consensus       106 ~~~~~A~~~~~~al~  120 (227)
                      |+|++|+.+|..+++
T Consensus        20 gny~eA~~lY~~ale   34 (75)
T cd02680          20 GNAEEAIELYTEAVE   34 (75)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            555555555555553

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=81.32  E-value=14  Score=24.82  Aligned_cols=76  Identities=20%  Similarity=0.333  Sum_probs=46.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcC
Q 027158           72 GNFPTAIEWLNKYLETFMADH---------DAWRELAEIYVSLQMYKQAAFCYEELIL--SQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g  140 (227)
                      +....-...+++++..+.++.         ..|...+..    -.  .+..+|..+..  +.-..+..+...|..+...|
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~  113 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----SS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG  113 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----BS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----cc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence            445555667777777665542         233333322    12  66666666654  44566777777888888888


Q ss_pred             CCCcHHHHHHHHHHHh
Q 027158          141 GVDNILLAKKYYASTI  156 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~  156 (227)
                      +   +++|...|+.++
T Consensus       114 ~---~~~A~~I~~~Gi  126 (126)
T PF08311_consen  114 N---FKKADEIYQLGI  126 (126)
T ss_dssp             ----HHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHhhC
Confidence            8   888888877654

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.68  E-value=8.7  Score=23.17  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=11.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLL   51 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l   51 (227)
                      ..|.-+-..|++.+|+.+|+.++
T Consensus        11 ~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682          11 INAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Confidence            33444445555555555554443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=80.59  E-value=28  Score=27.87  Aligned_cols=129  Identities=13%  Similarity=0.138  Sum_probs=88.7

Q ss_pred             CChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 027158            4 QCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA   77 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A   77 (227)
                      +-.+++...+.++.... |.-..+.-.++-++-..     -+|..-..+|.-.....|+ +.+-.+.+.......-...+
T Consensus       270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~ag  348 (415)
T COG4941         270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAG  348 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhH
Confidence            34678888888888764 44444444555555433     4677777777777776665 44555666666665556777


Q ss_pred             HHHHHHHHHH--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           78 IEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        78 ~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      +...+.....  -......+...|.++.+.|..++|...|++++.+.++.....+...
T Consensus       349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~  406 (415)
T COG4941         349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ  406 (415)
T ss_pred             HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            7777766544  1233456778899999999999999999999999888776544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	5e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	7e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	8e-04

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 2/163 (1%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G +L  KG  + A + Y + ++ +     ++ +  +    +GNFP AI+++ K +     
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
           D   + EL + Y   + Y +A   + +++  +P + + +L  A             LAK 
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200

Query: 151 YY--ASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKES 191
           YY     +   GG   K          A          +   +
Sbjct: 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 6/131 (4%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
              L     +AEA + ++ L       P ++ RR         +  A + +  Y     A
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69

Query: 91  D---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 147
                  +    +I +       A   Y+  +    T    +       Y  G       
Sbjct: 70  TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL--- 126

Query: 148 AKKYYASTIDL 158
           A +Y    I  
Sbjct: 127 AIQYMEKQIRP 137

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 6/156 (3%)

Query: 6   LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA---YSSLLEDNPLDPVLHK 62
              A +    L+ +   S  +     +       +  A+K    Y S +          +
Sbjct: 19  YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78

Query: 63  RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 122
               I   +G    AI+     ++      D + ++   + +   +  A    E+ I   
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 123 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158
            T P          Y        + A   +   ++L
Sbjct: 139 TTDPKVFYELGQAYYYNK---EYVKADSSFVKVLEL 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 1/134 (0%)

Query: 7   DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66
              + C+++  +Q P++  V  L   +         +    +  ++ NPL    +     
Sbjct: 17  AAERHCMQLW-RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75

Query: 67  IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
           + K +G    AIE     L       D +  LA   V+    + A   Y   +   P + 
Sbjct: 76  VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135

Query: 127 LYHLAYADVLYTLG 140
                  ++L  LG
Sbjct: 136 CVRSDLGNLLKALG 149

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 3/128 (2%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                  G +  AE+    L    P +  +     +I         +  +    ++    
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
             +A+  L  +Y      ++A   Y   +  +P     ++  A  L   G ++    A +
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQ 122

Query: 151 YYASTIDL 158
            Y S +  
Sbjct: 123 AYVSALQY 130

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 29/110 (26%), Positives = 41/110 (37%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
              L+ KG  AEAE  Y++ L   P           I + QGN   A+    K LE F  
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              A   LA +       ++A   Y+E I   PT    +    + L  + 
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
              L A G    A +AY S L+ NP    +      + KA G    A     K +ET   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
              AW  L  ++ +      A   +E+ +   P     ++   +VL      D    A  
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR---AVA 224

Query: 151 YYASTIDL 158
            Y   + L
Sbjct: 225 AYLRALSL 232

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 28/110 (25%), Positives = 41/110 (37%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G LL+A G   EA+  Y   +E  P   V       +  AQG    AI    K +     
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
             DA+  L  +    +++ +A   Y   +   P   + H   A V Y  G
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 7e-07
 Identities = 25/110 (22%), Positives = 40/110 (36%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G +L+   ++  A  AY   L  +P   V+H     +   QG    AI+   + +E    
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
             DA+  LA          +A  CY   +   PT        A++    G
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 18/103 (17%), Positives = 32/103 (31%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                 KG   EAE  +  L   +  +        AI + +  F  A +           
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133
           D+       +  + L+   +A  C+E +I       L   A +
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 71  QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130
           +G    A  +          + D    LA IY   + ++QAA  Y               
Sbjct: 49  KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108

Query: 131 AYADVLYTLGGVDNILLAKKYYASTIDL 158
                   L      L AK+ +   I  
Sbjct: 109 HTGQCQLRLK---APLKAKECFELVIQH 133

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 3/115 (2%)

Query: 38  GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 97
                      + +   P D V            G+       + + L       +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 98  LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 152
           L  +  + Q + +AA   ++   + P  P   L     L   G       A   Y
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG---QAEAAAAAY 114

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 17/115 (14%), Positives = 24/115 (20%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                  G     E A    L  +P  P    R   +   Q     A   L +  +    
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 145
                  L          + AA  Y       P  P       +    L     +
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 11/70 (15%), Positives = 20/70 (28%)

Query: 71  QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130
             + P  +  L   +     D  AW  LA+  + +          +  +   P  P    
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 131 AYADVLYTLG 140
               V +T  
Sbjct: 62  RLGRVRWTQQ 71

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G+          AE+ +S  L   P DP +      +A   G + TA +W    LE   A
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225

Query: 91  D---------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141
                           L  +   L+ Y +A   + + ++  P     + A   +   +G 
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG- 284

Query: 142 VDNILLAKKYYASTIDL 158
             N   A  Y+ + + L
Sbjct: 285 --NFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 4/118 (3%)

Query: 42  EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 101
            +E      ++    +  +            +F    +  +  +E               
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY--ASTID 157
            V L    +  +   +L+   P+ P+   A       +G  +    A++Y   A+T++
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNE--HARRYLSKATTLE 121

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 4/129 (3%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                    +    K  S ++E +P         +                +K ++ + +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

Query: 91  DHDAWRELAEIYVSL-QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 149
           +  +W  +   Y+ +    + A     +    + T     +AY          D    A 
Sbjct: 89  NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ---AM 145

Query: 150 KYYASTIDL 158
             Y +   L
Sbjct: 146 AAYFTAAQL 154

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNP-LDPVLHKRRVAIA--------KAQGNFPTAIEWL 81
           G++    G W  AEK +   LE    +   +   +            +    +  A+++ 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 82  NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141
            + L     +   +  +  I+  +  ++ A   +   +  +             +    G
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

Query: 142 VD 143
             
Sbjct: 320 DS 321

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 21/188 (11%), Positives = 42/188 (22%), Gaps = 38/188 (20%)

Query: 6   LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH---- 61
             +      V+ ++ P       +    L       E       L++  P +PV      
Sbjct: 38  FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97

Query: 62  --------KRRVAIA-----------------------KAQGNFPTAIEWLNKYLETFMA 90
                   K   A                           +     A+       +    
Sbjct: 98  CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG 157

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
            H     +   Y      K A   + + +   P  P        V +  G       A+K
Sbjct: 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT---AEK 214

Query: 151 YYASTIDL 158
           ++   ++ 
Sbjct: 215 WFLDALEK 222

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.5 bits (138), Expect = 7e-10
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 6   LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 65
           ++ A    +   + FPE          +L+ +G   EA   Y   +  +P     +    
Sbjct: 25  IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84

Query: 66  AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 125
              K   +   A++   + ++   A  DA   LA I+       +A   Y   +  +P  
Sbjct: 85  NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD- 143

Query: 126 PLYHLAYADVLYTL 139
             +  AY ++ + L
Sbjct: 144 --FPDAYCNLAHCL 155

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.2 bits (132), Expect = 4e-09
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 3/122 (2%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
             +   +G   EA + Y   LE  P     H    ++ + QG    A+    + +     
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
             DA+  +      +Q  + A  CY   I   P     H   A +    G +     A  
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP---EAIA 132

Query: 151 YY 152
            Y
Sbjct: 133 SY 134

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 54  NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 113
            P           I + QGN   A+    K LE F     A   LA +       ++A  
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 114 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158
            Y+E I   PT    +    + L  +    ++  A + Y   I +
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQ---DVQGALQCYTRAIQI 106

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 26/135 (19%), Positives = 39/135 (28%), Gaps = 10/135 (7%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G+     G    A +   S       DP+L      +A  + +  TAI      L     
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507

Query: 91  -------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 143
                      W  L   Y  L+MY  A     + +L        H A A V        
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK--- 564

Query: 144 NILLAKKYYASTIDL 158
              LA  +   ++ +
Sbjct: 565 IPGLAITHLHESLAI 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 3/128 (2%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
              L  +  + +     + +LE +P +  ++   +A     G         N  ++    
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
               W  +   Y+ +    +A   + +     P      + +A      G  D    A  
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ---AIS 428

Query: 151 YYASTIDL 158
            Y +   L
Sbjct: 429 AYTTAARL 436

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
            +   +        + Y S +        L   +      +  F   +    K LE    
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
           + D +              +      +L+   P   +  LA       +  +     A++
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS---EARR 394

Query: 151 YY--ASTID 157
           Y+  +ST+D
Sbjct: 395 YFSKSSTMD 403

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 3/128 (2%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           GI        +EA + +S     +P               +G    AI         F  
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
            H  +  L   ++ L     A    +         PL       V +      ++  A  
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS---DMQTAIN 496

Query: 151 YYASTIDL 158
           ++ + + L
Sbjct: 497 HFQNALLL 504

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 13/111 (11%), Positives = 28/111 (25%), Gaps = 1/111 (0%)

Query: 31  GILLEAKGLWAEAEK-AYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
             LL A   W    K  YS+  +++               +  +     E     +    
Sbjct: 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              D     A+       +        +++   P     +  +   L+  G
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 31  GILLEAKGLWAEAEKAY-------SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83
           G++   K     A   +            +               +    +  AI+ LN+
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 84  YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123
            L     D +    +A +Y+  ++   A     E +   P
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 16/103 (15%), Positives = 33/103 (32%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G      G W +A+K + +L   +  D        A  ++ G +  A++  +      + 
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133
           +       AE ++ L     A   +          P +    A
Sbjct: 85  EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 3/118 (2%)

Query: 45  KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 104
              + L   +                 G +  A +           D   +  L     S
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64

Query: 105 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 162
           L +Y+QA   Y    L     P +    A+    LG   ++  A+  + S   L   +
Sbjct: 65  LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG---DLDGAESGFYSARALAAAQ 119

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 21/122 (17%), Positives = 47/122 (38%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G  L A G  A+A   + + ++ +P + + + RR  +  A G    A+  L K +   M 
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
              A  +   + +      +A   +++++ S P+      A + ++           A  
Sbjct: 70  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129

Query: 151 YY 152
            +
Sbjct: 130 AF 131

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---------------QGNFP 75
           G LL  +G   EAE  +  +L+ NP +    +    + KA                 ++ 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 76  TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 135
            AI +L+K LE  + D +     AE ++     ++A    +     +          + +
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197

Query: 136 LYTLG 140
            Y LG
Sbjct: 198 YYQLG 202

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYL 85
               L   G + +A   Y S+++  P          +R             AI   ++ L
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299

Query: 86  ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
           +    + +A ++ AE Y+  +MY +A   YE                      L 
Sbjct: 300 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 13/80 (16%), Positives = 24/80 (30%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                      EA +  S +L+  P +    K R      +  +  AI+      E    
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 91  DHDAWRELAEIYVSLQMYKQ 110
           D      L +    L+  ++
Sbjct: 339 DQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 13/125 (10%), Positives = 33/125 (26%), Gaps = 15/125 (12%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
             +  A G    A    + ++           +R  +   QG    A +   K L++  +
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103

Query: 91  DHDAWRELAEI---------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 135
           + +     +++                     Y  A    ++++             A+ 
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163

Query: 136 LYTLG 140
               G
Sbjct: 164 FIKEG 168

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 15/121 (12%), Positives = 40/121 (33%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G +      + +A K +    E +P +   + +   +A  +  F       ++    F  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
             +     AEI      + +A   Y+  I  +  +   ++  A ++     +      + 
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430

Query: 151 Y 151
           +
Sbjct: 431 F 431

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           GI    K     A +     +E  P         + +A  + +      + +K L+    
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-RNDSTEYYNYFDKALKLDSN 302

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
           +   +    ++   LQ Y QA   +++     P     ++  A + Y     D+    + 
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD---CET 359

Query: 151 YYASTIDL 158
            ++     
Sbjct: 360 LFSEAKRK 367

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 10  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR----- 64
               +  +K FPE+  V      +L  K  + +A K Y   +E       ++        
Sbjct: 359 TLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417

Query: 65  ----VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
               +       NF  A   L K  +       A   LA++ +  +   +A   +EE   
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477

Query: 121 SQPTVPLYHLAYA 133
              T+     A  
Sbjct: 478 LARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 4/129 (3%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           +    +A  L+ E     +   +      +  +        + +   A E + K +E   
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LF 267

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 149
              +++  +A I        +    +++ +         +     + + L   D    A 
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ---AG 324

Query: 150 KYYASTIDL 158
           K +    +L
Sbjct: 325 KDFDKAKEL 333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 1/156 (0%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           +G        + +A K Y+  LE    DPV +    A   + G+    +E   K LE   
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 149
                    A     L  +  A F    L L+            +       +  +    
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 150 KYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRN 185
               +        +T+           +  +T   +
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 18/111 (16%), Positives = 35/111 (31%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           E    + +   + +EK Y    E+   D             +G+ P  I ++   +    
Sbjct: 37  ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
            D +AW+ L       +  + A    +  +  QP      +A A       
Sbjct: 97  GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 19/129 (14%), Positives = 33/129 (25%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           EG+    +G          + +  +P D    +          N   AI  L + LE   
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 149
            +  A   LA  Y +    + A    +  I   P                  +    +  
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 150 KYYASTIDL 158
                  +L
Sbjct: 191 SVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 20/108 (18%), Positives = 35/108 (32%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G+L    G +  A  A+++ L   P D  L  R  A          A+E   + LE    
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 138
              +   L    ++L  Y++A   +   +  Q             +  
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 4/144 (2%)

Query: 16  LQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 75
           + K    S ++     +  +    + +A   Y  LL+  P +    +    +   +G   
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105

Query: 76  TAIEWLNKYLETFMADHDAWRELAEIYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134
            A+    K L+    +  A   L   Y  + +  K+      + + S   +         
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165

Query: 135 VLYTLGGVDNILLAKKYYASTIDL 158
                   +    A+      I  
Sbjct: 166 SKLFTTRYEK---ARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 18/145 (12%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNP----------------LDPVLHKRRVAIAKAQGN 73
           +       G   +A   +   +  N                 +   L        K   N
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 74  FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133
           +  A  +  + L+    + D     AE+ V     K A   YE+++  +      ++   
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 134 DVLYTLGGVDNILLAKKYYASTIDL 158
           +  Y     +      +     +  
Sbjct: 130 NYYYLTA--EQEKKKLETDYKKLSS 152

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 1/124 (0%)

Query: 6   LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR- 64
            D A    K L ++ P +         +   +G   +A + Y  +L+    +   +    
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 65  VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124
                        +E   K L +      A        +    Y++A    +++IL  P+
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189

Query: 125 VPLY 128
               
Sbjct: 190 TEAQ 193

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 10  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 69
            D  KV+Q +  +        G LL  +G   EAE  +  +L+ NP +    + +  + K
Sbjct: 81  PDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

Query: 70  AQ---------------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 114
           +                G++  AI +L+K LE  + D +     AE ++     ++A   
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199

Query: 115 YEELILSQPTVPLYHLAYADVLYTLG 140
            +     +          + + Y LG
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLG 225

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 22/124 (17%), Positives = 50/124 (40%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G  L A G  A+A   + + ++ +P + + + RR  +  A G    A+  L K ++  M 
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
              A  +   + +      +A   +++++ S P+      A + ++ +         A  
Sbjct: 93  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152

Query: 151 YYAS 154
            + S
Sbjct: 153 AFGS 156

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYL 85
               L   G + +A   Y S+++  P          +R             AI   ++ L
Sbjct: 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322

Query: 86  ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
           +    + +A ++ AE Y+  +MY +A   YE                      L 
Sbjct: 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 15/93 (16%), Positives = 32/93 (34%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
            +     G +  A      +LE    D  L + R      +G    AI  L    +    
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123
           + +A+ +++ +Y  L  ++ +     E +    
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 15/102 (14%), Positives = 28/102 (27%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                      EA +  S +L+  P +    K R      +  +  AI+      E    
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 132
           D      L +    L+  ++  +     +           AY
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 18/174 (10%), Positives = 49/174 (28%), Gaps = 26/174 (14%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
             +  A G    A    + +++          +R  +   QG    A +   K L++  +
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 91  DHDAWRELAEI---------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 135
           +++     +++                     Y  A    ++++             A+ 
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

Query: 136 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALF--GICLCSS-----AIAQLTK 182
               G       A     +   L    NT+A +              +++++ +
Sbjct: 187 FIKEGEPRK---AISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 19/94 (20%), Positives = 29/94 (30%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           EG+ +      AEA  A+ ++ +  P      +              AI  LN       
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123
            D      LA  + +      A       +LSQP
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 11/70 (15%), Positives = 15/70 (21%)

Query: 71  QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130
             N   A        +      +AWR L       +    A        +  P     H 
Sbjct: 30  LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89

Query: 131 AYADVLYTLG 140
           A A       
Sbjct: 90  ALAVSHTNEH 99

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 8/134 (5%)

Query: 10  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 69
                 +++   E +   ++        G            +E        H+    + K
Sbjct: 59  STLNDAVEQG-REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117

Query: 70  AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 129
              N    ++             +  R   + Y +   +  A   Y E+I   P      
Sbjct: 118 -LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DA 173

Query: 130 LAY---ADVLYTLG 140
             Y   A  L  L 
Sbjct: 174 RGYSNRAAALAKLM 187

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G     K  W  A KAY+ +++  P D   +  R A      +FP AI   NK +E    
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133
              A+   A   ++++ Y  A    +            +   +
Sbjct: 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAE---VNNGSS 245

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 1/110 (0%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                 KG +  A    +  +E        +K         GN    +  L K +E +  
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY-Q 103

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
                   A+I   L+  ++     E      P             +T  
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 6/113 (5%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
             +L       +  K   +    NP      +        + ++P A++   + ++    
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLG 140
           D   +   A     L  + +A     + I   P    +  AY   A     + 
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVK 221

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 15/109 (13%), Positives = 28/109 (25%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                  G + +A   + +L   +  D        A  +A G +  AI   +      + 
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 139
           +       AE  +      +A              P +      V   L
Sbjct: 88  EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 3/117 (2%)

Query: 42  EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 101
                 + L E +                 G +  A             D   +  L   
Sbjct: 5   SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64

Query: 102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158
             ++  Y  A   Y    +     P +    A+ L   G +     A+       +L
Sbjct: 65  RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE---AESGLFLAQEL 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 14/128 (10%), Positives = 39/128 (30%), Gaps = 4/128 (3%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
            +L ++  ++     A +          +           + N   A   L + +     
Sbjct: 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH-P 274

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
             +++  LA      +  ++    +++ +   P  P  +     + + L    N   AK+
Sbjct: 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN---AKE 331

Query: 151 YYASTIDL 158
            +     L
Sbjct: 332 DFQKAQSL 339

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 15/99 (15%), Positives = 31/99 (31%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G +      +  A++ +      NP +   + +   +   QG F  +  + N+    F  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 129
             +     AEI      +  A   Y+     +      H
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 34/195 (17%), Positives = 54/195 (27%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G        + EA K Y   +E +P +PV +    A   + G+    IE+  K LE    
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
              A    A    SL  +  A F    L L+            +       +  +     
Sbjct: 92  HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLS 151

Query: 151 YYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRA 210
                       NT       +  S +   +   +     +  L S A   L     +  
Sbjct: 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211

Query: 211 PAKLLLLTSALKSLK 225
                LLT +     
Sbjct: 212 LVANDLLTKSTDMYH 226

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/110 (19%), Positives = 41/110 (37%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
            + L  K    E  K +   ++ NP  P  +  R  +     ++  A E   K       
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
           +   + +LA +      + ++   + E  L  PT+P     +A++L   G
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 42  EAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 97
             E   + L   +P       V  K R        NF  AI++    +E    +   +  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 98  LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
           ++  Y+S    ++      + +  +P      L  A    +LG
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 16/114 (14%), Positives = 26/114 (22%), Gaps = 3/114 (2%)

Query: 29  LEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86
           LE   +     +  A    S  L+      D         + K+   + + +        
Sbjct: 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237

Query: 87  TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
                  A       +        A    +E I   PT   Y    A  L    
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKE 290

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 18/147 (12%), Positives = 43/147 (29%), Gaps = 2/147 (1%)

Query: 9   AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 68
             D +   +  + E+  V        + +    +  +    +L    ++      +    
Sbjct: 53  LVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL 112

Query: 69  KAQGNFPT-AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 127
               ++   A   L+K ++      +AW +L E+Y        A  C+   +        
Sbjct: 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS 172

Query: 128 YHLAYADVLYTLGGVDNILLAKKYYAS 154
                + VL  L        ++    S
Sbjct: 173 LQ-NLSMVLRQLQTDSGDEHSRHVMDS 198

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 19/119 (15%), Positives = 32/119 (26%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           EG+ +      AEA  A+ ++ +  P      +              AI  LN       
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 148
            D      LA  + +      A       +LSQP               +  ++     
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 13/103 (12%), Positives = 20/103 (19%)

Query: 38  GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 97
           G   +    Y     +  +                N   A        +      +AWR 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 98  LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
           L       +    A        +  P     H A A       
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 18/93 (19%), Positives = 29/93 (31%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G+L      +  A       +E  P D  L  +  A          A++  N+ L+    
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123
                  +A  Y ++  Y  AA      I  Q 
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 18/117 (15%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA---------------KAQGNFP 75
            +    +     A  +  + L   P    L    +                   A   + 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 76  TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 132
                L+  LE    D      L  +Y     Y  AA      +  +P        +
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD---DAQLW 209

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 16/94 (17%), Positives = 32/94 (34%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           EG+    +G    A   + + ++ +P      +              AI  L + LE   
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123
            +  A   LA  + +  + +QA     + +   P
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 21  PESKRVGRLEGILLEAKGLWAEA-----EKAYSSLLEDNPL-DPVLHKRRVAIAKAQGNF 74
            E + + + +         + +      +K Y    E+NPL D             +G+ 
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQ-FEEENPLRDHPQPFEEGLRRLQEGDL 80

Query: 75  PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134
           P A+      ++      +AW+ L       +    A       +  +P      +A A 
Sbjct: 81  PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 140

Query: 135 VLYTLG 140
                 
Sbjct: 141 SFTNES 146

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G+L    G + +A   +++ L   P D +L  +  A          A+    + LE    
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH----LAYADVLYTLG 140
              +   L    ++L  +++A   + E +  Q               ++  TL 
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 9/110 (8%), Positives = 20/110 (18%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
               +A                  P   V         +A       +  L +       
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              A         +L+  ++      +     P   +   +       L 
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 10/113 (8%), Positives = 20/113 (17%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
               +A                  P   V         +A       +  L +       
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 138

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 143
              A         +L+  +       +     P   +   +       L  V 
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ 191

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 10/112 (8%), Positives = 21/112 (18%), Gaps = 7/112 (6%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G   +A                  P   V         +A       +  L +       
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 142
              A         +L+  ++      +     P            + +  G 
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-------EQVVAIASHDGG 421

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 11/113 (9%), Positives = 23/113 (20%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G   +A                  P   V         +A       +  L +       
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 143
              A         +L+  ++      +     P   +   + +     L  V 
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQ 293

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 9/110 (8%), Positives = 20/110 (18%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
               +A                  P   V         +A       +  L +       
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              A         +L+  ++      +     P   +   +       L 
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G   +A                  P   V         +A       +  L +       
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              A    +    +L+  ++      +     P   +   +       L 
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G   +A                  P   V         +A       +  L +       
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 9/113 (7%), Positives = 21/113 (18%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
               +A                  P   V         +A       +  L +       
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 143
              A         +L+  ++      +     P   +   +       L  + 
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 14/120 (11%), Positives = 25/120 (20%), Gaps = 6/120 (5%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G   +A                  P   V         +A       +  L +       
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
              A         +L+         +  + +          +   L  LGG   +   KK
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGGRPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 12/113 (10%), Positives = 27/113 (23%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G +   + + A       + L   P   V         +A       +  L +       
Sbjct: 45  GGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 143
              A         +L+  ++      +     P   +   ++      L  V 
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 157

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 20/174 (11%), Positives = 46/174 (26%), Gaps = 10/174 (5%)

Query: 44  EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE------ 97
           E        +            A    + ++   I  L K L   +   D ++       
Sbjct: 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160

Query: 98  LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV----DNILLAKKYYA 153
           +A IY      K+    +E+++     +         V Y              +     
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220

Query: 154 STIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYK 207
             I+++   N+ AL G                + + E    ++     + + + 
Sbjct: 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.4 bits (106), Expect = 7e-06
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                  G + +A +A++  +E+N  D + +     +  +      A+ + +K LE   +
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              A+     +YV  +MYK+A   +E+ + +            D+ Y LG
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-------NGDLFYMLG 132

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 41  AEAEKAYSSLLEDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 96
             +   +       P    +  +   +++      G++  A E   K +E    D   + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 97  ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLG 140
             A +  S+   ++A   Y++ +    +      AY    +V     
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKE 105

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 18/110 (16%), Positives = 31/110 (28%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G +L        A       +E N  D     +       +G    A+       E    
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
             DA+      Y   +  ++A    ++ I  QP   L   A   + +   
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.7 bits (105), Expect = 8e-06
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 6   LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL--WAEAEKAYSSLLEDNPLDPVLHKR 63
           LD+A+  +K +Q Q  ++         +  A G     +A   +  + +      +L   
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205

Query: 64  RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY-EELILSQ 122
           + A   AQG +  A   L + L+      +    L  +   L    +    Y  +L  + 
Sbjct: 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265

Query: 123 PTVPL 127
            + P 
Sbjct: 266 RSHPF 270

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 29/89 (32%)

Query: 70  AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 129
           +Q N    ++ L   +     + + W  L E Y+    Y  +   Y + +  +      +
Sbjct: 22  SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81

Query: 130 LAYADVLYTLGGVDNILLAKKYYASTIDL 158
            A A VLY           +      + L
Sbjct: 82  AALATVLYYQASQHMTAQTRAMIDKALAL 110

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 24/144 (16%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLH-------------------KRRVAIAKAQ 71
                 K    +A +     LE  P +  LH                          K  
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 72  GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP---LY 128
                A+  L K  E           LA ++     Y++A + +++    + T     L 
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 129 HLAYADVLYTLGGVDNILLAKKYY 152
           HL Y +             A  ++
Sbjct: 374 HLRYGNFQLYQMK--CEDKAIHHF 395

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 22/145 (15%)

Query: 27  GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86
                 + E      E EK     LE  P    + +      + +     AIE L K LE
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275

Query: 87  TFMADHDAWRELAEIYVS-------------------LQMYKQAAFCYEELILSQPTVPL 127
               +     ++   Y +                   L++   A    ++   +   +  
Sbjct: 276 YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335

Query: 128 YHLAYADVLYTLGGVDNILLAKKYY 152
                A +            A+ Y+
Sbjct: 336 VCSILASLHALAD---QYEEAEYYF 357

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G   +A                  P   V         +A       +  L +       
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE 647

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 11/115 (9%), Positives = 23/115 (20%), Gaps = 7/115 (6%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G   +A                  P   V         +A       +  L +       
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 145
              A         +L+  ++      +     P            + + GG   +
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD-------QVVAIASNGGKQAL 408

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 9/110 (8%), Positives = 22/110 (20%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
               +A                  P   V     +   +A       +  L +       
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 293 QVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALE 342

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 11/112 (9%), Positives = 24/112 (21%), Gaps = 7/112 (6%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G   +A                   +  V     +   +A       +  L +      A
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 142
              A         +L+  ++      +     P            + + GG 
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-------DQVVAIASNGGG 676

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 11/93 (11%), Positives = 31/93 (33%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G++       A+A++ +   L  N   P +      +   +  +  A ++ + + +    
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123
           +  +      +    +    AA    +L    P
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM- 89
            ++ + +     A++ Y   L  +  +  +          Q  +  A + L +  +  + 
Sbjct: 78  AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137

Query: 90  -ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 148
                 +  L  + + ++   QA   +E+ +      P   L  AD+LY        + A
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER---EYVPA 194

Query: 149 KKYYASTIDL 158
           ++YY      
Sbjct: 195 RQYYDLFAQG 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 31/197 (15%), Positives = 57/197 (28%), Gaps = 72/197 (36%)

Query: 10  KDCIKVL----QKQ-------FPESKRVGRLEGILLEAKGLWAEAEK----------AYS 48
           +  + VL     ++       FP S  +     ILL    +W +  K             
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI---PTILLSL--IWFDVIKSDVMVVVNKLHKY 414

Query: 49  SLLEDNP-----------LD--------PVLHKR---RVAIAKAQGNFPTAIEWLNKYLE 86
           SL+E  P           L+          LH+       I K   +      +L++Y  
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 87  TFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 139
           + +  H       +       +++  +  +Q                + H + A      
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---------------IRHDSTA--WNAS 517

Query: 140 GGVDNILLAKKYYASTI 156
           G + N L   K+Y   I
Sbjct: 518 GSILNTLQQLKFYKPYI 534

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/128 (19%), Positives = 37/128 (28%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G+L ++ GL A A   +S  L   P  P +           GNF  A E  +  LE    
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150
            + A              K A           P  P   L        L       + K+
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169

Query: 151 YYASTIDL 158
           ++  +   
Sbjct: 170 HFEKSDKE 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G+       +  A      + E NP++  +  R        G F  AI+     L     
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 136
           +    R +A  Y  +  +++A   +++            +  A V 
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG---ASVELALVP 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           GI     G +++A      + + +  D  +           G      E L + L     
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
           +      L   YV +Q Y  A     ++  + P          +V + LG
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-------NFNVRFRLG 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 1/117 (0%)

Query: 24  KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83
             + R        KG   +A          NP    LH +R  +    G    A   L +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 84  YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
            L       +    LAE+Y+S+    +A   Y + +   P      + YA  L   G
Sbjct: 144 ALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 71  QGNFPTAIEWLNKYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPT--- 124
            G +  A +    +LE +       +A   L E Y + + ++ A   + +L+   PT   
Sbjct: 15  NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK 74

Query: 125 VPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157
                L      Y  G       A++       
Sbjct: 75  AAGGLLKLGLSQYGEGKNTE---AQQTLQQVAT 104

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 25  RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 84
           +     G L  A+      E    +    +      +K RV   +  G+   A  WL   
Sbjct: 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241

Query: 85  LETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELI 119
            +   A++      WR +A   + L  ++ A    EEL 
Sbjct: 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
             +L+       A K     +E N  +  V H RRV +   Q +    + ++   +E   
Sbjct: 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123
            ++  W     +   L+   Q      +++    
Sbjct: 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.97
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.94
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.94
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.94
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.93
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.93
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.93
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.92
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.91
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.91
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.91
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.89
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.89
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.89
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.88
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.88
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.87
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.87
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.86
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.85
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.85
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.84
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.84
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.84
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.84
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.83
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.82
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.82
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.82
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.82
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.81
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.81
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.81
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.81
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.81
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.8
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.8
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.8
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.8
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.8
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.8
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.79
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.79
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.79
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.79
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.78
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.78
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.78
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.78
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.77
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.77
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.77
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.77
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.77
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.77
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.76
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.76
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.76
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.76
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.76
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.76
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.75
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.75
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.75
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.74
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.74
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.74
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.74
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.73
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.73
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.72
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.71
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.71
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.71
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.7
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.7
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.7
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.68
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.68
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.67
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.65
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.64
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.63
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.63
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.62
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.62
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.61
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.61
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.59
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.58
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.56
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.54
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.53
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.51
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.51
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.51
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.5
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.49
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.48
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.42
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.41
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.4
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.4
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.34
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.33
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.31
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.3
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.26
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.26
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.26
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.24
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.24
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.21
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.18
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.12
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.09
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.05
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.03
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.96
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.94
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.91
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.73
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.65
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.6
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.51
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.5
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.44
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.03
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.01
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.96
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.9
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.85
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.79
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.67
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.2
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.12
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.11
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.1
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.87
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.86
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.82
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.77
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.65
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.62
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.54
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.51
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.32
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.3
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.28
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.12
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.97
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.76
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.66
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.63
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.18
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.55
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.54
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.99
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.19
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.98
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.07
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	85.11
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.66
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.65
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	83.29
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	83.16
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	82.98
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	80.88
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	80.25

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.97  E-value=2e-28  Score=180.66  Aligned_cols=177  Identities=13%  Similarity=0.010  Sum_probs=166.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ----------   71 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----------   71 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...          
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~   96 (217)
T 2pl2_A           17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG   96 (217)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             -CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 027158           72 -GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK  150 (227)
Q Consensus        72 -~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~  150 (227)
                       |++++|+..|+++++++|+++.+|..+|.++...|++++|+.+|++++.++ +++.++..+|.++...|+   +++|+.
T Consensus        97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~---~~~A~~  172 (217)
T 2pl2_A           97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR---LDEALA  172 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC---HHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC---HHHHHH
Confidence             999999999999999999999999999999999999999999999999999 999999999999999999   999999


Q ss_pred             HHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          151 YYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      .|+++++++|+ +..+++.++.++...++...+
T Consensus       173 ~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          173 QYAKALEQAPK-DLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             HHHHHHHHSTT-CHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHH
Confidence            99999999996 999999999999888875543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.96  E-value=5.1e-27  Score=168.30  Aligned_cols=160  Identities=17%  Similarity=0.044  Sum_probs=155.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|+..+
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   96 (184)
T 3vtx_A           17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDAL   96 (184)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .+++..+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.++..+|+   +++|+..|+++++++|+
T Consensus        97 ~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A           97 QRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL---RDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTHH
T ss_pred             HHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999   99999999999999995


Q ss_pred             Cchh
Q 027158          162 KNTK  165 (227)
Q Consensus       162 ~~~~  165 (227)
                       ++.
T Consensus       174 -~a~  176 (184)
T 3vtx_A          174 -KAK  176 (184)
T ss_dssp             -HHH
T ss_pred             -CHH
Confidence             543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.94  E-value=9.3e-26  Score=179.30  Aligned_cols=172  Identities=12%  Similarity=0.061  Sum_probs=162.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      .|++++|+..+++++..+|++..++..+|.++...|+ +++|+..|++++..+|++..+|..+|.++...|++++|+..|
T Consensus       110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~  189 (382)
T 2h6f_A          110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI  189 (382)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence            5889999999999999999999999999999999997 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCCCcHHHH-----HHHHHHH
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGGVDNILLA-----KKYYAST  155 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~~~~A-----~~~~~~~  155 (227)
                      +++++++|.+..+|.++|.++...|++++|+.+|++++.++|.+..+|.++|.++.. .|.   .++|     +.+|+++
T Consensus       190 ~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~---~~eA~~~~el~~~~~A  266 (382)
T 2h6f_A          190 ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY---NDRAVLEREVQYTLEM  266 (382)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS---CSHHHHHHHHHHHHHH
T ss_pred             HHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc---chHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 554   4777     5999999


Q ss_pred             hhhcCCCchhHHHhHHHHHHHHH
Q 027158          156 IDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      +.++|+ +..+++.++.++...+
T Consensus       267 l~l~P~-~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          267 IKLVPH-NESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHSTT-CHHHHHHHHHHHTTTC
T ss_pred             HHHCCC-CHHHHHHHHHHHHccC
Confidence            999996 8888888887776643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.94  E-value=1.3e-25  Score=166.28  Aligned_cols=167  Identities=11%  Similarity=0.005  Sum_probs=151.8

Q ss_pred             CCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      ..|++++|+..|++++...| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..
T Consensus        19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   98 (228)
T 4i17_A           19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT   98 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH
Confidence            46899999999999999998 88888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcH------
Q 027158           81 LNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNI------  145 (227)
Q Consensus        81 ~~~~l~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~------  145 (227)
                      |+++++.+|+++       .+|..+|.++...|++++|+.+|++++..+|+  ++.++..+|.++...|+   .      
T Consensus        99 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~---~~~~~a~  175 (228)
T 4i17_A           99 LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA---DVLRKAT  175 (228)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH---HHHHHHG
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            999999999998       66999999999999999999999999999999  88999999999999888   6      


Q ss_pred             ---------------------HHHHHHHHHHhhhcCCCchhHHHhHHH
Q 027158          146 ---------------------LLAKKYYASTIDLTGGKNTKALFGICL  172 (227)
Q Consensus       146 ---------------------~~A~~~~~~~~~~~~~~~~~~~~~l~~  172 (227)
                                           ++|+.+|+++++++|+ +......+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~  222 (228)
T 4i17_A          176 PLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ  222 (228)
T ss_dssp             GGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence                                 8999999999999996 6655554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.94  E-value=5.7e-25  Score=179.85  Aligned_cols=177  Identities=16%  Similarity=0.054  Sum_probs=170.3

Q ss_pred             CCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------
Q 027158            2 DCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---------   71 (227)
Q Consensus         2 ~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---------   71 (227)
                      ..|++ ++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++...         
T Consensus       114 ~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~  192 (474)
T 4abn_A          114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS  192 (474)
T ss_dssp             SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhh
Confidence            57899 99999999999999999999999999999999999999999999999999 79999999999999         


Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcC
Q 027158           72 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL--------QMYKQAAFCYEELILSQP---TVPLYHLAYADVLYTLG  140 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g  140 (227)
                      |++++|+..|+++++++|+++.+|..+|.++...        |++++|+.+|++++.++|   .++.++.++|.++...|
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g  272 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE  272 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999        999999999999999999   99999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          141 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      +   +++|+..|+++++++|+ +..++..++.++..+++...+
T Consensus       273 ~---~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          273 S---YGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             C---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            9   99999999999999996 888999999999998876644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=1.3e-24  Score=160.06  Aligned_cols=156  Identities=19%  Similarity=0.143  Sum_probs=149.9

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      |+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHh
Q 027158          101 IYVSL-----------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG  169 (227)
Q Consensus       101 ~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  169 (227)
                      ++...           |++++|+..|++++..+|+++.++..+|.++...|+   +++|+..|+++++++ + ++..++.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-~-~~~~~~~  156 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE---RDKAEASLKQALALE-D-TPEIRSA  156 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-C-CHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcc-c-chHHHHH
Confidence            99999           999999999999999999999999999999999999   999999999999999 5 8899999


Q ss_pred             HHHHHHHHHhhh
Q 027158          170 ICLCSSAIAQLT  181 (227)
Q Consensus       170 l~~~~~~~~~~~  181 (227)
                      ++.++...++..
T Consensus       157 la~~~~~~g~~~  168 (217)
T 2pl2_A          157 LAELYLSMGRLD  168 (217)
T ss_dssp             HHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHH
Confidence            999999988754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.94  E-value=3.4e-25  Score=188.51  Aligned_cols=157  Identities=15%  Similarity=0.084  Sum_probs=133.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|
T Consensus        21 ~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~  100 (723)
T 4gyw_A           21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY  100 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++++++|+++.+|.++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|+   +++|.+.|++++++.|+
T Consensus       101 ~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~---~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD---WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---CTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc---HHHHHHHHHHHHHhChh
Confidence            888888888888888888888888888888888888888888888888888888888888   88888888888877653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.94  E-value=2e-24  Score=154.68  Aligned_cols=157  Identities=18%  Similarity=0.091  Sum_probs=150.6

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      ++++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  180 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (227)
                      ++...++++.|...+.+++..+|.++.++..+|.++...|+   +++|+..|+++++++|+ ++.+++.++.++..+++.
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence            99999999999999999999999999999999999999999   99999999999999996 999999999999988864


Q ss_pred             h
Q 027158          181 T  181 (227)
Q Consensus       181 ~  181 (227)
                      .
T Consensus       158 ~  158 (184)
T 3vtx_A          158 D  158 (184)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.93  E-value=6.1e-25  Score=186.93  Aligned_cols=158  Identities=19%  Similarity=0.214  Sum_probs=153.0

Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 027158           20 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA   99 (227)
Q Consensus        20 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la   99 (227)
                      .|+++.++..+|.++..+|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++++|+++.+|+++|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          100 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      .++...|++++|+.+|+++++++|++..++.++|.++..+|+   +++|+..|+++++++|+ +..++.+++.++..+++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence            999999999999999999999999999999999999999999   99999999999999996 99999999999988877


Q ss_pred             hh
Q 027158          180 LT  181 (227)
Q Consensus       180 ~~  181 (227)
                      +.
T Consensus       161 ~~  162 (723)
T 4gyw_A          161 WT  162 (723)
T ss_dssp             CT
T ss_pred             HH
Confidence            54

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=5.5e-24  Score=167.91  Aligned_cols=176  Identities=13%  Similarity=0.058  Sum_probs=159.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus        78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  157 (365)
T 4eqf_A           78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK  157 (365)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHcC--------------------------------------------C--CHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158           83 KYLETFM--------------------------------------------A--DHDAWRELAEIYVSLQMYKQAAFCYE  116 (227)
Q Consensus        83 ~~l~~~p--------------------------------------------~--~~~~~~~la~~~~~~~~~~~A~~~~~  116 (227)
                      ++++.+|                                            .  ++.++..+|.++...|++++|+.+|+
T Consensus       158 ~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  237 (365)
T 4eqf_A          158 NWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN  237 (365)
T ss_dssp             HHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            8776654                                            3  78889999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          117 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       117 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      +++..+|+++.++..+|.++...|+   +++|+..|+++++..|+ +..++..++.++...++...
T Consensus       238 ~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          238 AALTVRPEDYSLWNRLGATLANGDR---SEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence            9999999999999999999999999   99999999999999995 88899999999988887543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=3e-24  Score=159.73  Aligned_cols=174  Identities=14%  Similarity=0.056  Sum_probs=162.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+
T Consensus        35 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  114 (243)
T 2q7f_A           35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF  114 (243)
T ss_dssp             -------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++++.+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++|+..|+++++..|+
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~  191 (243)
T 2q7f_A          115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM---LDEALSQFAAVTEQDPG  191 (243)
T ss_dssp             HHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999999999999999999999999999999999999   99999999999999995


Q ss_pred             CchhHHHhHHHHHHHHHh
Q 027158          162 KNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~  179 (227)
                       +...+..++.++...++
T Consensus       192 -~~~~~~~la~~~~~~~~  208 (243)
T 2q7f_A          192 -HADAFYNAGVTYAYKEN  208 (243)
T ss_dssp             -CHHHHHHHHHHHHHTTC
T ss_pred             -cHHHHHHHHHHHHHccC
Confidence             88899999999887775

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.93  E-value=1.1e-23  Score=159.44  Aligned_cols=173  Identities=11%  Similarity=0.048  Sum_probs=161.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTA   77 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A   77 (227)
                      ..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|.++...|++++|
T Consensus        15 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A   93 (272)
T 3u4t_A           15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLA   93 (272)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHH
Confidence            578999999999999999999999999999999999999999999999999 4443    45589999999999999999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      +..|+++++.+|.++.+|..+|.++...|++++|+.+|++++..+|.++.++..+|...+..++   +++|+..|+++++
T Consensus        94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~  170 (272)
T 3u4t_A           94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE---YVKADSSFVKVLE  170 (272)
T ss_dssp             HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999955556668   9999999999999


Q ss_pred             hcCCCchhHHHhHHHHHHHHHh
Q 027158          158 LTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      ..|+ +...++.++.++..+++
T Consensus       171 ~~p~-~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          171 LKPN-IYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HSTT-CHHHHHHHHHHHHHHST
T ss_pred             hCcc-chHHHHHHHHHHHHcCc
Confidence            9996 88899999999888865

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.93  E-value=6.5e-24  Score=168.88  Aligned_cols=178  Identities=18%  Similarity=0.114  Sum_probs=164.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|
T Consensus       181 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  260 (388)
T 1w3b_A          181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY  260 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|+   +++|+..|+++++..|+
T Consensus       261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~  337 (388)
T 1w3b_A          261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHTTSCTT
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999   99999999999999995


Q ss_pred             CchhHHHhHHHHHHHHHhhhcC
Q 027158          162 KNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                       +...+..++.++...++..++
T Consensus       338 -~~~~~~~l~~~~~~~g~~~~A  358 (388)
T 1w3b_A          338 -FAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             -CHHHHHHHHHHHHTTTCCHHH
T ss_pred             -cHHHHHHHHHHHHHcCCHHHH
Confidence             888888888888877765543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.93  E-value=1e-23  Score=167.72  Aligned_cols=175  Identities=17%  Similarity=0.104  Sum_probs=139.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus       148 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  227 (388)
T 1w3b_A          148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL  227 (388)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            57777888888888877887777788888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      +++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+   +++|+..|+++++..|+ 
T Consensus       228 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-  303 (388)
T 1w3b_A          228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS---VAEAEDCYNTALRLCPT-  303 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHCTT-
T ss_pred             HHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcc-
Confidence            88888888888888888888888888888888888888888888888888888888888   88888888888888875 


Q ss_pred             chhHHHhHHHHHHHHHhhh
Q 027158          163 NTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~~~  181 (227)
                      +...+..++.++...++..
T Consensus       304 ~~~~~~~l~~~~~~~g~~~  322 (388)
T 1w3b_A          304 HADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCHH
Confidence            7777777777776655543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.1e-23  Score=157.87  Aligned_cols=175  Identities=15%  Similarity=0.060  Sum_probs=165.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCh
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PVLHKRRVAIAKAQGNF   74 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~l~~~~~~~~~~   74 (227)
                      ..|++++|+..|++++..+ .++.++..+|.++...|++++|+..+++++..+|.+       +.++..+|.++...|++
T Consensus        17 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (258)
T 3uq3_A           17 KARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL   95 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence            4689999999999999999 899999999999999999999999999999998876       79999999999999999


Q ss_pred             HHHHHHHHHHHH--------------------------HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           75 PTAIEWLNKYLE--------------------------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        75 ~~A~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      ++|+..|++++.                          .+|.++.++..+|.++...|++++|+.+|++++..+|.++.+
T Consensus        96 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  175 (258)
T 3uq3_A           96 KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG  175 (258)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHH
Confidence            999999999999                          566678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      +..+|.++...|+   +++|+..|+++++.+|+ +...++.++.++...++..
T Consensus       176 ~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          176 YSNRAAALAKLMS---FPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhCC---HHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHH
Confidence            9999999999999   99999999999999996 8999999999999887633

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=1.8e-22  Score=148.13  Aligned_cols=173  Identities=13%  Similarity=0.047  Sum_probs=161.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-GNFPTAIEW   80 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~   80 (227)
                      ..|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++... |++++|+..
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~   99 (225)
T 2vq2_A           20 RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY   99 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHH--HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           81 LNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        81 ~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      ++++++  .+|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++|...++++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ---LGDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred             HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence            999999  6677789999999999999999999999999999999999999999999999999   99999999999999


Q ss_pred             cC-CCchhHHHhHHHHHHHHH
Q 027158          159 TG-GKNTKALFGICLCSSAIA  178 (227)
Q Consensus       159 ~~-~~~~~~~~~l~~~~~~~~  178 (227)
                      .| + ....+..++.++...+
T Consensus       177 ~~~~-~~~~~~~~~~~~~~~~  196 (225)
T 2vq2_A          177 VEVL-QADDLLLGWKIAKALG  196 (225)
T ss_dssp             HCSC-CHHHHHHHHHHHHHTT
T ss_pred             CCCC-CHHHHHHHHHHHHhcC
Confidence            99 6 6666666655555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.92  E-value=1.2e-24  Score=151.31  Aligned_cols=139  Identities=14%  Similarity=0.038  Sum_probs=100.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~   89 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR   89 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            35667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFC-YEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ++++++|+++.+|..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus        90 ~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           90 RSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            77777777777777777777777777665544 477777777777777777777766664

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.92  E-value=5.4e-23  Score=163.41  Aligned_cols=172  Identities=10%  Similarity=0.050  Sum_probs=162.4

Q ss_pred             CCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            3 CQC-LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      .|+ +++|+..|++++..+|++..+|..+|.++...|++++|+..|++++.++|++..+|..+|.++...|++++|+.+|
T Consensus       144 ~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~  223 (382)
T 2h6f_A          144 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV  223 (382)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            576 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHH-cccHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHH
Q 027158           82 NKYLETFMADHDAWRELAEIYVS-LQMYKQA-----AFCYEELILSQPTVPLYHLAYADVLYTLG--GVDNILLAKKYYA  153 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~~~~A~~~~~  153 (227)
                      +++++++|.+..+|+++|.++.. .|.+++|     +.+|++++.++|++..+|..+|.++...|  +   +++|+..+.
T Consensus       224 ~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~---~~~a~~~~~  300 (382)
T 2h6f_A          224 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK---YPNLLNQLL  300 (382)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG---CHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc---hHHHHHHHH
Confidence            99999999999999999999999 5655777     59999999999999999999999999988  6   899999999


Q ss_pred             HHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          154 STIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      ++ +.+|+ +..++..++.++..+++
T Consensus       301 ~~-~~~p~-~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          301 DL-QPSHS-SPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             HH-TTTCC-CHHHHHHHHHHHHHHHH
T ss_pred             Hh-ccCCC-CHHHHHHHHHHHHHHhc
Confidence            98 88885 88999999999988864

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.92  E-value=3.9e-23  Score=153.71  Aligned_cols=169  Identities=13%  Similarity=0.021  Sum_probs=160.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+
T Consensus        69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  148 (243)
T 2q7f_A           69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL  148 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++|...|+++++.+|+
T Consensus       149 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcc
Confidence            999999999999999999999999999999999999999999999999999999999999   99999999999999996


Q ss_pred             CchhHHHhHHHHH
Q 027158          162 KNTKALFGICLCS  174 (227)
Q Consensus       162 ~~~~~~~~l~~~~  174 (227)
                       +..++..+..+.
T Consensus       226 -~~~~~~~~~~l~  237 (243)
T 2q7f_A          226 -HMLALHAKKLLG  237 (243)
T ss_dssp             -CHHHHHHHTC--
T ss_pred             -hHHHHHHHHHHH
Confidence             777776665443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.92  E-value=1.1e-22  Score=160.30  Aligned_cols=178  Identities=15%  Similarity=0.077  Sum_probs=161.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+
T Consensus        76 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  155 (368)
T 1fch_A           76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL  155 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999888888777


Q ss_pred             HHHHHHc-------------------------------------------------CC--CHHHHHHHHHHHHHcccHHH
Q 027158           82 NKYLETF-------------------------------------------------MA--DHDAWRELAEIYVSLQMYKQ  110 (227)
Q Consensus        82 ~~~l~~~-------------------------------------------------p~--~~~~~~~la~~~~~~~~~~~  110 (227)
                      ++++..+                                                 |.  ++.++..+|.++...|++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~  235 (368)
T 1fch_A          156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK  235 (368)
T ss_dssp             HHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence            7666544                                                 44  67888999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          111 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       111 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      |+.+|++++..+|+++.++..+|.++...|+   +++|+..|++++++.|+ +..+++.++.++...++..++
T Consensus       236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999999   99999999999999995 888999999999988876543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=4e-23  Score=154.73  Aligned_cols=174  Identities=15%  Similarity=0.137  Sum_probs=165.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.++
T Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  128 (252)
T 2ho1_A           49 QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL  128 (252)
T ss_dssp             HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH--HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           82 NKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        82 ~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      ++++.  ..|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++|...|+++++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~  205 (252)
T 2ho1_A          129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE---YVPARQYYDLFAQGG  205 (252)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred             HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence            99999  8888999999999999999999999999999999999999999999999999999   999999999999999


Q ss_pred             CCCchhHHHhHHHHHHHHHh
Q 027158          160 GGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~  179 (227)
                      |+ ....+..++.++...++
T Consensus       206 ~~-~~~~~~~~~~~~~~~g~  224 (252)
T 2ho1_A          206 GQ-NARSLLLGIRLAKVFED  224 (252)
T ss_dssp             CC-CHHHHHHHHHHHHHTTC
T ss_pred             cC-cHHHHHHHHHHHHHccC
Confidence            95 88888888888876664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.92  E-value=1.7e-23  Score=158.06  Aligned_cols=177  Identities=14%  Similarity=0.094  Sum_probs=139.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH-----
Q 027158            2 DCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKA-----   70 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~-----   70 (227)
                      ..|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|+++++.+|++   +.+++.+|.++..     
T Consensus        27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~  106 (261)
T 3qky_A           27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY  106 (261)
T ss_dssp             HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence            4678888888888888888877   7788888888888888888888888888887754   5678888888888     


Q ss_pred             ---cCChHHHHHHHHHHHHHcCCCHHHH-----------------HHHHHHHHHcccHHHHHHHHHHHHhhCCC---CHH
Q 027158           71 ---QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAAFCYEELILSQPT---VPL  127 (227)
Q Consensus        71 ---~~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~  127 (227)
                         .|++++|+..|++++..+|+++.++                 +.+|.+|...|++++|+..|++++...|+   .+.
T Consensus       107 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  186 (261)
T 3qky_A          107 ELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADD  186 (261)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred             cccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHH
Confidence               8888888888888888888876555                 77788888888888888888888888887   456


Q ss_pred             HHHHHHHHHHHc----------CCCCcHHHHHHHHHHHhhhcCCCc---hhHHHhHHHHHHHHHhhhc
Q 027158          128 YHLAYADVLYTL----------GGVDNILLAKKYYASTIDLTGGKN---TKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       128 ~~~~la~~~~~~----------g~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~  182 (227)
                      +++.+|.++..+          |+   +++|+..|+++++..|+ +   ..+...+..+...+++..+
T Consensus       187 a~~~l~~~~~~~g~~~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          187 ALVGAMRAYIAYAEQSVRARQPER---YRRAVELYERLLQIFPD-SPLLRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGHHHH---HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccchhhcccch---HHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHHHHhhh
Confidence            788888888877          55   88888888888888886 4   3344455566666666544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=5.5e-23  Score=159.33  Aligned_cols=177  Identities=12%  Similarity=-0.005  Sum_probs=168.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEW   80 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~   80 (227)
                      ..|++++|+..+++++..+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+..
T Consensus        34 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  113 (330)
T 3hym_B           34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY  113 (330)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      |++++..+|.++.+|..+|.++...|++++|+.+|++++...|.+..++..+|.++...|+   +++|+..|+++++..|
T Consensus       114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~  190 (330)
T 3hym_B          114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN---SKLAERFFSQALSIAP  190 (330)
T ss_dssp             HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999   9999999999999999


Q ss_pred             CCchhHHHhHHHHHHHHHhhhc
Q 027158          161 GKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      + +...+..++.++...+++.+
T Consensus       191 ~-~~~~~~~l~~~~~~~~~~~~  211 (330)
T 3hym_B          191 E-DPFVMHEVGVVAFQNGEWKT  211 (330)
T ss_dssp             T-CHHHHHHHHHHHHHTTCHHH
T ss_pred             C-ChHHHHHHHHHHHHcccHHH
Confidence            6 88899999999888776543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.92  E-value=4.4e-22  Score=147.25  Aligned_cols=156  Identities=18%  Similarity=0.141  Sum_probs=148.5

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 027158           21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP-LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA   99 (227)
Q Consensus        21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la   99 (227)
                      +.++..++.+|.++...|++++|+..|++++..+| .+..++..+|.++...|++++|+..|++++..+|.++.+|..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            45678999999999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC--chhHHHhH
Q 027158          100 EIYVSLQMYKQAAFCYEELILSQPTVP-------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK--NTKALFGI  170 (227)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l  170 (227)
                      .++...|++++|+.+|++++..+|+++       .++..+|.++...|+   +++|+..|+++++++| .  +..+++.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p-~~~~~~~~~~l  159 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN---IEKAEENYKHATDVTS-KKWKTDALYSL  159 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc---HHHHHHHHHHHHhcCC-CcccHHHHHHH
Confidence            999999999999999999999999999       669999999999999   9999999999999999 6  67899999


Q ss_pred             HHHHHHHHhh
Q 027158          171 CLCSSAIAQL  180 (227)
Q Consensus       171 ~~~~~~~~~~  180 (227)
                      +.++...+..
T Consensus       160 ~~~~~~~~~~  169 (228)
T 4i17_A          160 GVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888774

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.92  E-value=1.5e-22  Score=159.42  Aligned_cols=176  Identities=14%  Similarity=0.127  Sum_probs=159.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------------
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN---------------------------   54 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------------------------   54 (227)
                      ..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+                           
T Consensus       110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 1fch_A          110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG  189 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred             HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence            35788888999999888888888888888888888888888777777666554                           


Q ss_pred             ----------------------CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158           55 ----------------------PL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  110 (227)
Q Consensus        55 ----------------------p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~  110 (227)
                                            |.  ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++
T Consensus       190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence                                  44  678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCc-----------hhHHHhHHHHHHHHHh
Q 027158          111 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN-----------TKALFGICLCSSAIAQ  179 (227)
Q Consensus       111 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~  179 (227)
                      |+.+|++++..+|.++.++..+|.++...|+   +++|+..|++++++.|+ .           ...+..++.++..+++
T Consensus       270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          270 AVAAYRRALELQPGYIRSRYNLGISCINLGA---HREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CCCccccccchhhHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999   99999999999999996 5           7889999999999887


Q ss_pred             hh
Q 027158          180 LT  181 (227)
Q Consensus       180 ~~  181 (227)
                      ..
T Consensus       346 ~~  347 (368)
T 1fch_A          346 SD  347 (368)
T ss_dssp             GG
T ss_pred             hH
Confidence            54

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=6e-23  Score=159.09  Aligned_cols=175  Identities=11%  Similarity=-0.022  Sum_probs=112.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      .|++++|+..+++++..+|+++.++..+|.++...| ++++|+..+++++..+|.++.++..+|.++...|++++|+..|
T Consensus        69 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  148 (330)
T 3hym_B           69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY  148 (330)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            356666666666666666666666666666666666 6666666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc--
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT--  159 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~--  159 (227)
                      +++++..|.+..++..+|.++...|++++|+.++++++..+|.++.++..+|.++...|+   +++|+..|+++++..  
T Consensus       149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE---WKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc---HHHHHHHHHHHHHHhhh
Confidence            666666666666666666666666666666666666666666666666666666666666   666666666666654  


Q ss_pred             -------CCCchhHHHhHHHHHHHHHhhh
Q 027158          160 -------GGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       160 -------~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                             | .....+..++.++...++..
T Consensus       226 ~~~~~~~~-~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          226 IGNEVTVD-KWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             TSCSCTTT-TCCHHHHHHHHHHHHTTCHH
T ss_pred             cccccccc-HHHHHHHHHHHHHHHhcCHH
Confidence                   3 24455556666655555444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=7.5e-23  Score=160.07  Aligned_cols=177  Identities=14%  Similarity=0.010  Sum_probs=167.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|
T Consensus        15 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   94 (359)
T 3ieg_A           15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF   94 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcC---CCHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 027158           82 NKYLETFM---ADHDAWREL------------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  146 (227)
Q Consensus        82 ~~~l~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  146 (227)
                      +++++.+|   .++.++..+            |.++...|++++|+.++++++...|.++.++..+|.++...|+   ++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  171 (359)
T 3ieg_A           95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE---PR  171 (359)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HH
T ss_pred             HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC---HH
Confidence            99999999   888888877            7899999999999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          147 LAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      +|+..++++++..|+ +...+..++.++...++...
T Consensus       172 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~  206 (359)
T 3ieg_A          172 KAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHEL  206 (359)
T ss_dssp             HHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            999999999999996 88999999999988887554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.91  E-value=7.4e-24  Score=180.24  Aligned_cols=170  Identities=16%  Similarity=0.043  Sum_probs=162.9

Q ss_pred             CCCChHHHHHHHHHHH--------HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 027158            2 DCQCLDVAKDCIKVLQ--------KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN   73 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~   73 (227)
                      ..|++++|+..+++++        ..+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|+
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  482 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD  482 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence            5789999999999999        88999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158           74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  153 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  153 (227)
                      +++|+..|+++++++|+++.+|.++|.++...|++++ +.+|+++++.+|++..+++++|.++..+|+   +++|+..|+
T Consensus       483 ~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~  558 (681)
T 2pzi_A          483 YDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD---RVGAVRTLD  558 (681)
T ss_dssp             HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence            9999999999999999999999999999999999999 999999999999999999999999999999   999999999


Q ss_pred             HHhhhcCCCchhHHHhHHHHHHH
Q 027158          154 STIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      ++++++|+ +..++++++.++..
T Consensus       559 ~al~l~P~-~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          559 EVPPTSRH-FTTARLTSAVTLLS  580 (681)
T ss_dssp             TSCTTSTT-HHHHHHHHHHHTC-
T ss_pred             hhcccCcc-cHHHHHHHHHHHHc
Confidence            99999995 88888888887644

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.91  E-value=2.1e-23  Score=152.70  Aligned_cols=156  Identities=12%  Similarity=-0.014  Sum_probs=140.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHH----------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRL----------------EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV   65 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~   65 (227)
                      +.|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            4799999999999999999999999999                999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 027158           66 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD  143 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  143 (227)
                      .++...|++++|+..|+++++++|+++.+|..+|.+|+..|+  ...+...+++++...| ...+++.+|.++...|+  
T Consensus        96 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~--  172 (208)
T 3urz_A           96 EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTR--  172 (208)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccC--
Confidence            999999999999999999999999999999999999987764  5667788888764333 23467888999999999  


Q ss_pred             cHHHHHHHHHHHhhhcCC
Q 027158          144 NILLAKKYYASTIDLTGG  161 (227)
Q Consensus       144 ~~~~A~~~~~~~~~~~~~  161 (227)
                       +++|+.+|++++++.|+
T Consensus       173 -~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          173 -YEKARNSLQKVILRFPS  189 (208)
T ss_dssp             -HHHHHHHHHHHTTTSCC
T ss_pred             -HHHHHHHHHHHHHhCCC
Confidence             99999999999999995

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.4e-23  Score=153.61  Aligned_cols=166  Identities=11%  Similarity=0.012  Sum_probs=154.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------
Q 027158            2 DCQCLDVAKDCIKVLQKQFPES-------KRVGRLEGILLEAKGLWAEAEKAYSSLLE----------------------   52 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----------------------   52 (227)
                      ..|++++|+..+++++...|++       +.++..+|.++...|++++|+..+++++.                      
T Consensus        50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~  129 (258)
T 3uq3_A           50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE  129 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence            3689999999999999998865       68999999999999999999999999999                      


Q ss_pred             ----cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           53 ----DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        53 ----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                          .+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  209 (258)
T 3uq3_A          130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA  209 (258)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHH
Confidence                6777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc------CCCchhHHHhHH
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDLT------GGKNTKALFGIC  171 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~  171 (227)
                      +..+|.++...|+   +++|+..|++++++.      |+ +...+..+.
T Consensus       210 ~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~p~-~~~~~~~l~  254 (258)
T 3uq3_A          210 YIRKATAQIAVKE---YASALETLDAARTKDAEVNNGSS-AREIDQLYY  254 (258)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhh---HHHHHHHHHHHHHhChhhcCCCc-hHHHHHHHH
Confidence            9999999999999   999999999999999      64 555554444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.91  E-value=1.1e-22  Score=160.35  Aligned_cols=174  Identities=16%  Similarity=0.126  Sum_probs=154.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------------
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN----------------------------   54 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------------------   54 (227)
                      .|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+                            
T Consensus       112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g  191 (365)
T 4eqf_A          112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS  191 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence            5788888888888888888888888888888888888888877777776654                            


Q ss_pred             ----------------CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158           55 ----------------PL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE  116 (227)
Q Consensus        55 ----------------p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  116 (227)
                                      |.  ++.++..+|.++...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+.+|+
T Consensus       192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  271 (365)
T 4eqf_A          192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT  271 (365)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                            44  788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC-----------chhHHHhHHHHHHHHHh
Q 027158          117 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK-----------NTKALFGICLCSSAIAQ  179 (227)
Q Consensus       117 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~  179 (227)
                      +++..+|+++.++..+|.++...|+   +++|+..|++++++.|+.           ....+..++.++..+++
T Consensus       272 ~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          272 RALEIQPGFIRSRYNLGISCINLGA---YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred             HHHhcCCCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence            9999999999999999999999999   999999999999999851           24566777777776664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.91  E-value=1.2e-24  Score=151.34  Aligned_cols=141  Identities=15%  Similarity=0.054  Sum_probs=127.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158           30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  109 (227)
Q Consensus        30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~  109 (227)
                      +|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            67888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhhhcCCCchhHHHhHHHHH
Q 027158          110 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY-YASTIDLTGGKNTKALFGICLCS  174 (227)
Q Consensus       110 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~  174 (227)
                      +|+.+|+++++++|+++.++..+|.++...|+   +++|... ++++++++|+ ++.++.....+.
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll  144 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPG-SPAVYKLKEQLL  144 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcC-CHHHHHHHHHHH
Confidence            99999999999999999999999999999999   9877765 5899999996 776665544433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.91  E-value=1.2e-22  Score=144.58  Aligned_cols=156  Identities=15%  Similarity=0.035  Sum_probs=150.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++
T Consensus        21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  100 (186)
T 3as5_A           21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI  100 (186)
T ss_dssp             HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++|...++++++..|+
T Consensus       101 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR---HEEALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHC
T ss_pred             HHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999   99999999999999886

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.91  E-value=9.7e-23  Score=166.67  Aligned_cols=174  Identities=10%  Similarity=-0.003  Sum_probs=165.3

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW-AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      .+++++..++......|.++.+++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            367788888888888899999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCCCcHH
Q 027158           84 YLETFMADHDAWRELAEIYVSL---------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL--------GGVDNIL  146 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~~~  146 (227)
                      +++++|+ ..++..+|.++...         |++++|+.+|++++..+|+++.++..+|.++...        |+   ++
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~---~~  238 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI---SQ  238 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH---HH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch---HH
Confidence            9999999 79999999999999         9999999999999999999999999999999999        99   99


Q ss_pred             HHHHHHHHHhhhcC---CCchhHHHhHHHHHHHHHhhhcC
Q 027158          147 LAKKYYASTIDLTG---GKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       147 ~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      +|+..|+++++++|   + ++.+++.++.++..++++..+
T Consensus       239 ~A~~~~~~al~~~p~~~~-~~~~~~~lg~~~~~~g~~~~A  277 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASS-NPDLHLNRATLHKYEESYGEA  277 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGG-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCCCccc-CHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999   6 899999999999998876653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.91  E-value=4.1e-23  Score=139.28  Aligned_cols=118  Identities=16%  Similarity=0.180  Sum_probs=82.5

Q ss_pred             HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHH
Q 027158           18 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE   97 (227)
Q Consensus        18 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~   97 (227)
                      ..+|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.+|+.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            45566666666777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158           98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  135 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  135 (227)
                      +|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            77777777777777777777777777777666666654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=2.1e-21  Score=151.87  Aligned_cols=178  Identities=11%  Similarity=0.038  Sum_probs=163.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|
T Consensus       132 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHH------------HHHHHHHHcccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCCCcH
Q 027158           82 NKYLETFMADHDAWR------------ELAEIYVSLQMYKQAAFCYEELILSQPTVPL----YHLAYADVLYTLGGVDNI  145 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~~  145 (227)
                      +++++.+|+++.++.            .+|.++...|++++|+..+++++...|+++.    ++..+|.++...|+   +
T Consensus       212 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~  288 (359)
T 3ieg_A          212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK---P  288 (359)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC---H
T ss_pred             HHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC---H
Confidence            999999999988765            3488899999999999999999999999874    46678999999999   9


Q ss_pred             HHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          146 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       146 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      ++|+..|+++++.+|+ ++..++.++.++...++..++
T Consensus       289 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A  325 (359)
T 3ieg_A          289 VEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEA  325 (359)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999995 888999999999988876654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.90  E-value=3.5e-21  Score=147.93  Aligned_cols=168  Identities=11%  Similarity=-0.019  Sum_probs=153.4

Q ss_pred             CCChHHHHHHHHHHHHh--CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      .|++++|+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..+|.++...|++++|+..
T Consensus        78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            57899999999999876  599999999999999999999999999988     89999999999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHH--HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           81 LNKYLETFMADHDAWRELA--EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      |+++++.+|++.......+  .++...|++++|+.+|++++..+|+++.++..+|.++...|+   +++|...|+++++.
T Consensus       153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~l~~al~~  229 (291)
T 3mkr_A          153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR---WEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred             HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence            9999999999875544433  334456899999999999999999999999999999999999   99999999999999


Q ss_pred             cCCCchhHHHhHHHHHHHHHh
Q 027158          159 TGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +|+ ++.++.+++.++...++
T Consensus       230 ~p~-~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          230 DSG-HPETLINLVVLSQHLGK  249 (291)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTC
T ss_pred             CCC-CHHHHHHHHHHHHHcCC
Confidence            996 99999999998888664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=4.7e-22  Score=160.73  Aligned_cols=177  Identities=14%  Similarity=0.024  Sum_probs=163.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus        38 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  117 (450)
T 2y4t_A           38 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF  117 (450)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCH---HHHHHH------------HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 027158           82 NKYLETFMADH---DAWREL------------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  146 (227)
Q Consensus        82 ~~~l~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  146 (227)
                      +++++.+|.++   .++..+            |.++...|++++|+.+|++++...|.++.++..+|.++...|+   ++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~  194 (450)
T 2y4t_A          118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE---PR  194 (450)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---GG
T ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HH
Confidence            99999999988   776655            6669999999999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          147 LAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      +|+..|+++++.+|+ ++..+..++.++...++...
T Consensus       195 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          195 KAISDLKAASKLKND-NTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             GGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            999999999999995 88899999998888776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=3.2e-21  Score=144.37  Aligned_cols=161  Identities=14%  Similarity=0.004  Sum_probs=154.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIE   79 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~   79 (227)
                      ..|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++.  ..|.+..++..+|.++...|++++|+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  162 (252)
T 2ho1_A           83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE  162 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            368999999999999999999999999999999999999999999999999  888899999999999999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .++++++.+|.++.++..+|.++...|++++|+.++++++...|.+..++..++.++...|+   +++|...++++++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          163 YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999   999999999999999


Q ss_pred             CCCchhH
Q 027158          160 GGKNTKA  166 (227)
Q Consensus       160 ~~~~~~~  166 (227)
                      |+ +...
T Consensus       240 p~-~~~~  245 (252)
T 2ho1_A          240 PG-SLEY  245 (252)
T ss_dssp             TT-SHHH
T ss_pred             CC-CHHH
Confidence            96 5543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=1.2e-21  Score=148.27  Aligned_cols=128  Identities=20%  Similarity=0.094  Sum_probs=108.7

Q ss_pred             CCChHHHHHHHHHHHHhC----CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQF----PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      .|++++|+..+++++...    |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence            467888888888888874    3567788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  130 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  130 (227)
                      .+|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++....
T Consensus        98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (275)
T 1xnf_A           98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL  149 (275)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence            8888888888888888888888888888888888888888888888764333

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.90  E-value=4.6e-22  Score=166.02  Aligned_cols=162  Identities=12%  Similarity=-0.045  Sum_probs=137.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..+++++..+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhhhc
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL---GGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~~~~A~~~~~~~~~~~  159 (227)
                      ++++.+|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...   |+   +++|...|+++++.+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999   88   999999999999999


Q ss_pred             CCCchhHHH
Q 027158          160 GGKNTKALF  168 (227)
Q Consensus       160 ~~~~~~~~~  168 (227)
                      |+ ....+.
T Consensus       159 p~-~~~~~~  166 (568)
T 2vsy_A          159 VG-AVEPFA  166 (568)
T ss_dssp             CC-CSCHHH
T ss_pred             Cc-ccChHH
Confidence            96 544443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=3.2e-22  Score=134.85  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=113.4

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           49 SLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        49 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      ++..++|+...++..+|..++..|++++|+..|+++++++|.++.+|.++|.++...|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHH
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC  173 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  173 (227)
                      ++.+|.++..+|+   +++|+..|+++++++|+ +..++.++..|
T Consensus        84 ~~~lg~~~~~~~~---~~~A~~~~~~al~l~P~-~~~a~~~l~~~  124 (126)
T 4gco_A           84 YIRKAACLVAMRE---WSKAQRAYEDALQVDPS-NEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC---HHHHHHHHHHHHHHCcC-CHHHHHHHHHh
Confidence            9999999999999   99999999999999996 88888777655

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.89  E-value=9.9e-21  Score=152.95  Aligned_cols=173  Identities=10%  Similarity=-0.051  Sum_probs=134.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR------------VAIAKA   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l------------~~~~~~   70 (227)
                      .|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+            |.++..
T Consensus       190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (450)
T 2y4t_A          190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR  269 (450)
T ss_dssp             TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777777777777777777777777777777777777777777777766555            777777


Q ss_pred             cCChHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 027158           71 QGNFPTAIEWLNKYLETFMADHD----AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  146 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  146 (227)
                      .|++++|+..|++++...|.++.    .+..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+   ++
T Consensus       270 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~  346 (450)
T 2y4t_A          270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM---YD  346 (450)
T ss_dssp             HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HH
Confidence            78888888888888887777743    677778888888888888888888888888888888888888888888   88


Q ss_pred             HHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          147 LAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +|+..|++++++.|+ +...+..++.+...++.
T Consensus       347 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          347 EAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             HHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhc
Confidence            888888888888885 77777777766666554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.89  E-value=5.3e-22  Score=153.58  Aligned_cols=177  Identities=16%  Similarity=0.145  Sum_probs=159.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLE--------------GI-LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA   66 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~   66 (227)
                      ..|++++|+..+++++...|.+...+..+              +. ++...|++++|+..+++++..+|.++.++..+|.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  180 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV  180 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            35788899999999998888887777766              66 6888899999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 027158           67 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  146 (227)
Q Consensus        67 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  146 (227)
                      ++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|+   ++
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~---~~  257 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ---YD  257 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc---HH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHhhhcCCC-----------chhHHHhHHHHHHHHHhhh
Q 027158          147 LAKKYYASTIDLTGGK-----------NTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~  181 (227)
                      +|+..|+++++..|+.           ....+..++.++..+++..
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            9999999999999952           5778888888888877644

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.89  E-value=6.8e-22  Score=152.95  Aligned_cols=177  Identities=16%  Similarity=0.115  Sum_probs=148.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+
T Consensus        33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  112 (327)
T 3cv0_A           33 KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL  112 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999988888877777766


Q ss_pred             HHHHH-------------------------------------------------HcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158           82 NKYLE-------------------------------------------------TFMADHDAWRELAEIYVSLQMYKQAA  112 (227)
Q Consensus        82 ~~~l~-------------------------------------------------~~p~~~~~~~~la~~~~~~~~~~~A~  112 (227)
                      ++++.                                                 .+|.++.++..+|.++...|++++|+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  192 (327)
T 3cv0_A          113 RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAA  192 (327)
T ss_dssp             HHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            66554                                                 45556677778888888888888888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          113 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       113 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      .++++++..+|+++.++..+|.++...|+   +++|+..|+++++..|+ +...++.++.++...++..+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          193 ANLRRAVELRPDDAQLWNKLGATLANGNR---PQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHH
Confidence            88888888888888888888888888888   88888888888888885 77788888888877766543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.89  E-value=6.5e-21  Score=159.26  Aligned_cols=175  Identities=16%  Similarity=0.035  Sum_probs=127.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..|++++...|++..++..++.++...|++++|...+++++...|+++.++..+|.++...|++++|+..|+
T Consensus       318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  397 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS  397 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            57777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      ++++.+|.+..+|..+|.++...|++++|+.+|++++...|.+..++..+|.++...|+   +++|+..|+++++..|+ 
T Consensus       398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-  473 (597)
T 2xpi_A          398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN---ILLANEYLQSSYALFQY-  473 (597)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC-
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-
Confidence            77777777777777777777777777777777777777777777777777777777777   77777777777777774 


Q ss_pred             chhHHHhHHHHHHHHHhhh
Q 027158          163 NTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~~~  181 (227)
                      ++..+..++.++.+.++..
T Consensus       474 ~~~~~~~l~~~~~~~g~~~  492 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQ  492 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHH
T ss_pred             ChHHHHHHHHHHHHhCCHH
Confidence            6666666666666655543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.89  E-value=3.5e-21  Score=160.88  Aligned_cols=177  Identities=12%  Similarity=-0.018  Sum_probs=110.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|...+++++...|++..++..+|.++...|++++|+..|+++++.+|.+..+|..++.++...|++++|+..|+
T Consensus       352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  431 (597)
T 2xpi_A          352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT  431 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh----
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL----  158 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~----  158 (227)
                      +++...|.++.+|..+|.+|...|++++|+.+|++++...|.++.++..+|.++...|+   +++|+..|+++++.    
T Consensus       432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~  508 (597)
T 2xpi_A          432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD---MQTAINHFQNALLLVKKT  508 (597)
T ss_dssp             HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhhcc
Confidence            66666666666666666666666666666666666666666666666666666666666   66666666666665    


Q ss_pred             --cCCCchhHHHhHHHHHHHHHhhhc
Q 027158          159 --TGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       159 --~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                        +|+.....+..++.++...++...
T Consensus       509 ~~~p~~~~~~~~~l~~~~~~~g~~~~  534 (597)
T 2xpi_A          509 QSNEKPWAATWANLGHAYRKLKMYDA  534 (597)
T ss_dssp             CCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCHHH
Confidence              332114555556655555554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.89  E-value=1.1e-21  Score=145.22  Aligned_cols=157  Identities=13%  Similarity=0.021  Sum_probs=141.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH-----
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKA-----   70 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~-----   70 (227)
                      ..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++.+|.++..     
T Consensus        16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~   95 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA   95 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            46899999999999999999764   68999999999999999999999999999998864   78889988876     


Q ss_pred             -------------cCChHHHHHHHHHHHHHcCCCHHHH-----------------HHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           71 -------------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        71 -------------~~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                                   .|++++|+..|+++++.+|+++.++                 ..+|.+|...|++++|+..|++++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  175 (225)
T 2yhc_A           96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR  175 (225)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence                         5789999999999999999987554                 5789999999999999999999999


Q ss_pred             hCCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          121 SQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       121 ~~p~~~---~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..|+++   .++..+|.++..+|+   +++|+..++++....|+
T Consensus       176 ~~p~~~~~~~a~~~l~~~~~~~g~---~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          176 DYPDTQATRDALPLMENAYRQMQM---NAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HSTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCCSC
T ss_pred             HCcCCCccHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhCCC
Confidence            999886   679999999999999   99999999999888886

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=1.9e-21  Score=160.34  Aligned_cols=177  Identities=14%  Similarity=0.059  Sum_probs=118.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+
T Consensus       288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  367 (537)
T 3fp2_A          288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF  367 (537)
T ss_dssp             CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45666667777777766666666666667777777777777777777777666666666666777777777777777777


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHc----------CCCCcH
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYTL----------GGVDNI  145 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~~~~~  145 (227)
                      +++++.+|.++.++..+|.++...|++++|+.+|++++...|+++.      .+..+|.++...          |+   +
T Consensus       368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~  444 (537)
T 3fp2_A          368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK---F  444 (537)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH---H
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH---H
Confidence            7777777766666667777777777777777777776666554332      244555666666          66   7


Q ss_pred             HHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          146 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       146 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      ++|+..|+++++.+|+ +..++..++.++...++..+
T Consensus       445 ~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          445 NAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHH
Confidence            7777777777777774 66677777777766665443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.88  E-value=1.8e-20  Score=137.48  Aligned_cols=162  Identities=17%  Similarity=0.100  Sum_probs=153.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GLWAEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      ..|++++|+..+++++...|.+..++..+|.++... |++++|+..+++++.  ..|.+..++..+|.++...|++++|+
T Consensus        54 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  133 (225)
T 2vq2_A           54 YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE  133 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            368999999999999999999999999999999999 999999999999999  66777899999999999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ..++++++.+|.++.++..+|.++...|++++|+.++++++...| .++.++..++.++...|+   .+.|..+++.+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~  210 (225)
T 2vq2_A          134 AYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999 999999999999999999   9999999999999


Q ss_pred             hcCCCchhHH
Q 027158          158 LTGGKNTKAL  167 (227)
Q Consensus       158 ~~~~~~~~~~  167 (227)
                      ..|+ ++...
T Consensus       211 ~~p~-~~~~~  219 (225)
T 2vq2_A          211 NFPY-SEELQ  219 (225)
T ss_dssp             HCTT-CHHHH
T ss_pred             hCCC-CHHHH
Confidence            9996 55443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.88  E-value=1.2e-22  Score=140.91  Aligned_cols=120  Identities=13%  Similarity=-0.060  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158           39 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  118 (227)
Q Consensus        39 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  118 (227)
                      ++-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+.+|+++
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            33334456778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          119 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       119 l~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +.++|+++.+++++|.++..+|+   +++|+..|++++++.|+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999   99999999999999996

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.88  E-value=7.9e-21  Score=143.42  Aligned_cols=159  Identities=14%  Similarity=0.068  Sum_probs=146.4

Q ss_pred             HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---
Q 027158           18 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---   91 (227)
Q Consensus        18 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---   91 (227)
                      ...|.++..++.+|..+...|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            4578899999999999999999999999999999999999   8999999999999999999999999999998865   


Q ss_pred             HHHHHHHHHHHHH--------cccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCCCcHH
Q 027158           92 HDAWRELAEIYVS--------LQMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNIL  146 (227)
Q Consensus        92 ~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~~~  146 (227)
                      +.+++.+|.++..        .|++++|+..|++++...|+++.+.                 +.+|.++...|+   ++
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~---~~  165 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL---YE  165 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---HH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---HH
Confidence            6789999999999        9999999999999999999987665                 888999999999   99


Q ss_pred             HHHHHHHHHhhhcCCC--chhHHHhHHHHHHHHHh
Q 027158          147 LAKKYYASTIDLTGGK--NTKALFGICLCSSAIAQ  179 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~  179 (227)
                      +|+..|+++++..|++  ...+++.++.++..++.
T Consensus       166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~  200 (261)
T 3qky_A          166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE  200 (261)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence            9999999999999962  45788999999998865

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.88  E-value=3.8e-21  Score=145.41  Aligned_cols=181  Identities=20%  Similarity=0.196  Sum_probs=142.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhh----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRV----GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA   77 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~----~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A   77 (227)
                      ..|++++|+..+++++. .|.++..    +..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|
T Consensus        49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  127 (272)
T 3u4t_A           49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA  127 (272)
T ss_dssp             HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence            36788888888888888 4444433    788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      +..|+++++.+|.++.+|..+|...+..+++++|+.+|++++..+|+++.++..+|.++...|+..++++|+..|+++++
T Consensus       128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  207 (272)
T 3u4t_A          128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE  207 (272)
T ss_dssp             HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence            88888888888888888888884555556888888888888888888888888888888888765446678888888887


Q ss_pred             hc---CCC----chhHHHhHHHHHHHHHhhhcC
Q 027158          158 LT---GGK----NTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       158 ~~---~~~----~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      ..   |+.    ...++..++.++...++..++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            75   421    135677778888777776654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.87  E-value=3.3e-21  Score=140.95  Aligned_cols=156  Identities=13%  Similarity=0.014  Sum_probs=134.8

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR----------------RVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      +...++..|..+...|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999                99999999999999999999999


Q ss_pred             HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158           87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus        87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                      ++|+++.++..+|.++...|++++|+.+|++++.++|+++.++..+|.+++..|+ .....+...|.+++...|  ...+
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~a  159 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSSPTK--MQYA  159 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CCCH--HHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCCc--hhHH
Confidence            9999999999999999999999999999999999999999999999999988774 114567788888765444  3345


Q ss_pred             HHhHHHHHHHHHhhh
Q 027158          167 LFGICLCSSAIAQLT  181 (227)
Q Consensus       167 ~~~l~~~~~~~~~~~  181 (227)
                      ++..+.+....+++.
T Consensus       160 ~~~~g~~~~~~~~~~  174 (208)
T 3urz_A          160 RYRDGLSKLFTTRYE  174 (208)
T ss_dssp             HHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHccCHH
Confidence            666777777666543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=1.9e-20  Score=143.82  Aligned_cols=155  Identities=11%  Similarity=0.016  Sum_probs=140.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCChHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV--AIAKAQGNFPTAIE   79 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~--~~~~~~~~~~~A~~   79 (227)
                      ..|++++|+..+++     |+++.++..+|.++...|++++|+..++++++.+|++.......+  .++...|++++|+.
T Consensus       113 ~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~  187 (291)
T 3mkr_A          113 YDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY  187 (291)
T ss_dssp             HTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             HCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence            46899999999988     899999999999999999999999999999999999875444333  34445689999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhhh
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL-AKKYYASTIDL  158 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~-A~~~~~~~~~~  158 (227)
                      .|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|+   ..+ +..++++++++
T Consensus       188 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~---~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK---PPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999   876 57899999999


Q ss_pred             cCCCchh
Q 027158          159 TGGKNTK  165 (227)
Q Consensus       159 ~~~~~~~  165 (227)
                      +|+ ++.
T Consensus       265 ~P~-~~~  270 (291)
T 3mkr_A          265 HRS-HPF  270 (291)
T ss_dssp             CTT-CHH
T ss_pred             CCC-ChH
Confidence            996 553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.1e-21  Score=158.11  Aligned_cols=154  Identities=16%  Similarity=0.075  Sum_probs=80.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..+++++...|+ +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+
T Consensus       250 ~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  328 (514)
T 2gw1_A          250 KNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD  328 (514)
T ss_dssp             SSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            34555555555555555555 55555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      +++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++|+..|+++++..|
T Consensus       329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~  403 (514)
T 2gw1_A          329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND---FDKALKQYDLAIELEN  403 (514)
T ss_dssp             HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhhh
Confidence            55555555555555555555555555555555555555555555555555555555555   5555555555555444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.87  E-value=9.9e-21  Score=156.10  Aligned_cols=174  Identities=13%  Similarity=0.056  Sum_probs=149.9

Q ss_pred             CChHHHHHHHHHHHHhCCCchh-------hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKR-------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT   76 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~-------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~   76 (227)
                      |++++|+..+++++...|+++.       ++..+|.++...|++++|+..+++++..+|+ +.++..+|.++...|++++
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  294 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQE  294 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH
Confidence            4688889999999998888754       4677788888889999999999999999988 8888899999999999999


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158           77 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus        77 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      |+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|+   +++|+..|++++
T Consensus       295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~  371 (537)
T 3fp2_A          295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK---FTESEAFFNETK  371 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988999999999999999   999999999999


Q ss_pred             hhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          157 DLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      +..|+ +...+..++.++...++..+
T Consensus       372 ~~~~~-~~~~~~~l~~~~~~~g~~~~  396 (537)
T 3fp2_A          372 LKFPT-LPEVPTFFAEILTDRGDFDT  396 (537)
T ss_dssp             HHCTT-CTHHHHHHHHHHHHTTCHHH
T ss_pred             HhCCC-ChHHHHHHHHHHHHhCCHHH
Confidence            99885 77888888888877666443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.87  E-value=2.5e-20  Score=132.48  Aligned_cols=153  Identities=16%  Similarity=0.116  Sum_probs=146.1

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  102 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  102 (227)
                      ....+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          103 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       103 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      ...|++++|+.++++++...|.++.++..+|.++...|+   +++|+..++++++..|+ +...+..++.++...++
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~  159 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGR  159 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999   99999999999999995 88899999988887665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.87  E-value=1.5e-21  Score=139.07  Aligned_cols=151  Identities=13%  Similarity=0.053  Sum_probs=97.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCChHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK-AQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~   81 (227)
                      .|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+.. ..+...+|+..+
T Consensus        19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~   97 (176)
T 2r5s_A           19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRL   97 (176)
T ss_dssp             TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHH
Confidence            46666677777776666666666666777777767777777777777666666 5555444443322 223334466666


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      +++++.+|+++.+++.+|.++...|++++|+..|++++..+|+.  +.++..+|.++...|+   .++|+..|++++.
T Consensus        98 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~---~~~A~~~y~~al~  172 (176)
T 2r5s_A           98 EQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ---GNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS---SCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC---CCcHHHHHHHHHH
Confidence            77777777767777777777777777777777777777666654  4466666666666666   6666666666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.87  E-value=2.1e-21  Score=134.70  Aligned_cols=115  Identities=15%  Similarity=0.003  Sum_probs=109.5

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158           12 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD   91 (227)
Q Consensus        12 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~   91 (227)
                      .+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            34556667888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 027158           92 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  126 (227)
Q Consensus        92 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  126 (227)
                      +.+|+++|.++...|++++|+.+|++++.+.|+.+
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999865

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=4.5e-20  Score=142.76  Aligned_cols=171  Identities=15%  Similarity=0.090  Sum_probs=153.6

Q ss_pred             hHHHHHHHHHHHH-hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChHHHHHHHHH
Q 027158            6 LDVAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         6 ~~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      +++|...|++++. ..|++..+|..+|.++...|++++|...|+++++..|.++. +|..+|.++...|++++|+..|++
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3899999999999 69999999999999999999999999999999999999987 999999999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh---c
Q 027158           84 YLETFMADHDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL---T  159 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~---~  159 (227)
                      +++..|.+..+|...+.+... .|++++|+.+|++++..+|+++.+|..+|.++...|+   +++|+..|++++..   .
T Consensus       160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~~l~  236 (308)
T 2ond_A          160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHSSSSC
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhccCCC
Confidence            999999998888877777544 7999999999999999999999999999999999999   99999999999996   4


Q ss_pred             CCCchhHHHhHHHHHHHHHh
Q 027158          160 GGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~  179 (227)
                      |+.....+..++......++
T Consensus       237 p~~~~~l~~~~~~~~~~~g~  256 (308)
T 2ond_A          237 PEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            43245566666666555553

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=2.7e-20  Score=143.98  Aligned_cols=171  Identities=11%  Similarity=-0.002  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHc
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEA-------KGLW-------AEAEKAYSSLLE-DNPLDPVLHKRRVAIAKAQ   71 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-------~~~~-------~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~   71 (227)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. .+|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999998874       5885       999999999999 6999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCCCcHHHHH
Q 027158           72 GNFPTAIEWLNKYLETFMADHD-AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGGVDNILLAK  149 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~~~~A~  149 (227)
                      |++++|+..|++++++.|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+...+. .|+   +++|+
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~---~~~A~  189 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAF  189 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---HHHHH
Confidence            9999999999999999999987 999999999999999999999999999999998888777766543 699   99999


Q ss_pred             HHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          150 KYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      ..|+++++..|+ ++..+..++......++..
T Consensus       190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~  220 (308)
T 2ond_A          190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHH
Confidence            999999999996 8888888887776655433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.86  E-value=6.2e-21  Score=132.13  Aligned_cols=128  Identities=13%  Similarity=-0.014  Sum_probs=108.5

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           44 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        44 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      -..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34678888888988889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHH
Q 027158          124 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  175 (227)
Q Consensus       124 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (227)
                      +++.+++.+|.++...|+   +++|+..|++++++.|+ ++........+..
T Consensus        87 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~  134 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIAN-XPEFXELSTRVSS  134 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTT-CGGGHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcC-CCcchHHHHHHHH
Confidence            999999999999999999   99999999999998885 5544333333333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.8e-20  Score=152.37  Aligned_cols=178  Identities=13%  Similarity=0.062  Sum_probs=143.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+
T Consensus       282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  361 (514)
T 2gw1_A          282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF  361 (514)
T ss_dssp             TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCCCcHHHHHHHH
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYT---LGGVDNILLAKKYY  152 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~~~~A~~~~  152 (227)
                      +++++.+|.++.++..+|.++...|++++|+.+|++++...|.++.      ++..+|.++..   .|+   +++|+..|
T Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~A~~~~  438 (514)
T 2gw1_A          362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN---FIEATNLL  438 (514)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH---HHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC---HHHHHHHH
Confidence            8888888888888888888888888888888888888887777654      77888888888   787   88888888


Q ss_pred             HHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          153 ASTIDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      +++++..|+ +..++..++.++...++..++
T Consensus       439 ~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A  468 (514)
T 2gw1_A          439 EKASKLDPR-SEQAKIGLAQMKLQQEDIDEA  468 (514)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCcc-cHHHHHHHHHHHHHhcCHHHH
Confidence            888888885 777777888887777765543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.86  E-value=1.2e-20  Score=144.70  Aligned_cols=163  Identities=8%  Similarity=-0.078  Sum_probs=148.5

Q ss_pred             HHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHH
Q 027158           16 LQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW   95 (227)
Q Consensus        16 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   95 (227)
                      +....|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+
T Consensus       109 l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~  188 (287)
T 3qou_A          109 LDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG  188 (287)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred             HHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH
Confidence            33445888999999999999999999999999999999999999999999999999999999999999999999777777


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCc--hhHHHhHHHH
Q 027158           96 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN--TKALFGICLC  173 (227)
Q Consensus        96 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~  173 (227)
                      ...+..+...++.+.|+..+++++..+|+++.+++.+|.++...|+   +++|+..|.++++.+|+ +  ..++..++.+
T Consensus       189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~  264 (287)
T 3qou_A          189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLT-AADGQTRXTFQEI  264 (287)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-GGGGHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccc-cccchHHHHHHHH
Confidence            7888888899999999999999999999999999999999999999   99999999999999996 5  7888999999


Q ss_pred             HHHHHhhhc
Q 027158          174 SSAIAQLTK  182 (227)
Q Consensus       174 ~~~~~~~~~  182 (227)
                      +..+++...
T Consensus       265 ~~~~g~~~~  273 (287)
T 3qou_A          265 LAALGTGDA  273 (287)
T ss_dssp             HHHHCTTCH
T ss_pred             HHHcCCCCc
Confidence            988887543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=4.9e-20  Score=141.54  Aligned_cols=156  Identities=13%  Similarity=0.047  Sum_probs=136.7

Q ss_pred             CCChHHHHHHHHHHHHhCCC------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKA   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~   70 (227)
                      .|++++|+..|++++...+.      ...++..+|.++...|++++|+.+|++++...|..      ..++..+|.++..
T Consensus        50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  129 (292)
T 1qqe_A           50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (292)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999987531      25688899999999999999999999999987643      4688999999999


Q ss_pred             c-CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHH
Q 027158           71 Q-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL-------YHLAYADVL  136 (227)
Q Consensus        71 ~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~  136 (227)
                      . |++++|+.+|++++++.|.+      ..++..+|.++...|++++|+.+|++++...|.+..       ++.++|.++
T Consensus       130 ~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  209 (292)
T 1qqe_A          130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ  209 (292)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence            6 99999999999999998865      567899999999999999999999999999987643       678999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          137 YTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..+|+   +++|+.+|+++++++|+
T Consensus       210 ~~~g~---~~~A~~~~~~al~l~p~  231 (292)
T 1qqe_A          210 LAATD---AVAAARTLQEGQSEDPN  231 (292)
T ss_dssp             HHTTC---HHHHHHHHHGGGCC---
T ss_pred             HHcCC---HHHHHHHHHHHHhhCCC
Confidence            99999   99999999999999996

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.85  E-value=3.2e-19  Score=120.07  Aligned_cols=134  Identities=22%  Similarity=0.260  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  104 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  104 (227)
                      .+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++..+..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          105 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       105 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .|++++|+.++++++...|.++.++..+|.++...|+   +++|...|.+++..+|+
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999999999   99999999999999884

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.85  E-value=8.6e-21  Score=131.40  Aligned_cols=120  Identities=13%  Similarity=-0.006  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158           10 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM   89 (227)
Q Consensus        10 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p   89 (227)
                      ...|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      +++.+++.+|.++...|++++|+.+|++++..+|+++...
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            9999999999999999999999999999999999877553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.85  E-value=2.6e-21  Score=151.56  Aligned_cols=152  Identities=16%  Similarity=0.151  Sum_probs=140.9

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVAIA   68 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~   68 (227)
                      +++++|+..++.++...|....++..+|.+++..|++++|+..|++++..+|.+               ..++.++|.++
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777788888899999999999999999999999999999999998               69999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 027158           69 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  148 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  148 (227)
                      ...|++++|+..|+++++++|.++.+++.+|.++...|++++|+.+|++++.++|++..++..++.++..+|+   +++|
T Consensus       207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a  283 (336)
T 1p5q_A          207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QLAR  283 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999   9888


Q ss_pred             -HHHHHHHhhh
Q 027158          149 -KKYYASTIDL  158 (227)
Q Consensus       149 -~~~~~~~~~~  158 (227)
                       ...|.+++..
T Consensus       284 ~~~~~~~~~~~  294 (336)
T 1p5q_A          284 EKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence             5577777654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.84  E-value=4.6e-20  Score=126.76  Aligned_cols=126  Identities=15%  Similarity=0.008  Sum_probs=105.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           45 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        45 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46778888889888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHH
Q 027158          125 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  174 (227)
Q Consensus       125 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (227)
                      ++.+++.+|.++...|+   +++|+..|+++++++|+ ++........+.
T Consensus        85 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~  130 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGD---LDGAESGFYSARALAAA-QPAHEALAARAG  130 (142)
T ss_dssp             CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHT-CGGGHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CcchHHHHHHHH
Confidence            99999999999999999   99999999999999885 544433333333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.84  E-value=1.8e-19  Score=133.24  Aligned_cols=156  Identities=10%  Similarity=0.048  Sum_probs=139.2

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH---HHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWR   96 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~   96 (227)
                      ++..++.+|..+...|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            466788999999999999999999999999998874   78999999999999999999999999999999864   889


Q ss_pred             HHHHHHHH------------------cccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCC
Q 027158           97 ELAEIYVS------------------LQMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGG  141 (227)
Q Consensus        97 ~la~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~  141 (227)
                      .+|.++..                  .|++++|+..|++++...|+++.++                 ..+|.++...|+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999886                  5799999999999999999987544                 678999999999


Q ss_pred             CCcHHHHHHHHHHHhhhcCCC--chhHHHhHHHHHHHHHhhh
Q 027158          142 VDNILLAKKYYASTIDLTGGK--NTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       142 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~  181 (227)
                         +.+|+..|+++++..|+.  ...+++.++.++..+++..
T Consensus       163 ---~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          163 ---WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             ---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence               999999999999999962  2367889999999888633

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.84  E-value=3.1e-20  Score=132.15  Aligned_cols=156  Identities=13%  Similarity=-0.004  Sum_probs=136.6

Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 027158           20 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA   99 (227)
Q Consensus        20 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la   99 (227)
                      +|.....++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+| ++..+..++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            3455667889999999999999999999999999999999999999999999999999999999999999 887776666


Q ss_pred             HHHH-HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-CchhHHHhHHHHHHHH
Q 027158          100 EIYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCSSAI  177 (227)
Q Consensus       100 ~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~  177 (227)
                      .+.. ..+....|+..+++++..+|+++.+++.+|.++...|+   +++|+..|+++++.+|+ .+..++..++.++..+
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~  157 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSAL  157 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence            5543 33445568999999999999999999999999999999   99999999999999996 2466888888888888


Q ss_pred             Hh
Q 027158          178 AQ  179 (227)
Q Consensus       178 ~~  179 (227)
                      ++
T Consensus       158 g~  159 (176)
T 2r5s_A          158 GQ  159 (176)
T ss_dssp             CS
T ss_pred             CC
Confidence            75

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.84  E-value=2.2e-19  Score=137.57  Aligned_cols=154  Identities=12%  Similarity=-0.035  Sum_probs=146.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++.++|+..+
T Consensus       129 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l  208 (287)
T 3qou_A          129 QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQL  208 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHH
Confidence            46899999999999999999999999999999999999999999999999999977777777777888999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      ++++..+|+++.+++.+|.++...|++++|+..|++++..+|++  ..++..++.++...|+   .++|...|++++..
T Consensus       209 ~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~---~~~a~~~~r~al~~  284 (287)
T 3qou_A          209 QQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT---GDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC---CCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998  8899999999999999   99999999998763

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.84  E-value=2.1e-20  Score=141.44  Aligned_cols=155  Identities=13%  Similarity=0.118  Sum_probs=139.3

Q ss_pred             CCCChHHHHHHHHHHHHh--------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRRV   65 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~   65 (227)
                      ..|++++|+.++++++..        .|....++..+|.++...|++++|+..+++++..        .|....++..+|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            467888888888888874        2556788999999999999999999999999987        356678899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHH
Q 027158           66 AIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------QPTVPLYH  129 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~  129 (227)
                      .++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.++++++..        .|....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999998        3666789999999999999999999999999998        66677899


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          130 LAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      ..+|.++...|+   +++|+..|+++++..
T Consensus       173 ~~la~~~~~~g~---~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          173 NNLASCYLKQGK---YQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHHHHHHTC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence            999999999999   999999999999874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.83  E-value=2.1e-20  Score=128.43  Aligned_cols=128  Identities=13%  Similarity=0.009  Sum_probs=115.7

Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158           11 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA   90 (227)
Q Consensus        11 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~   90 (227)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158           91 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus        91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      ++.+++.+|.++...|++++|+.+|++++..+|+++........+...
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999887665555444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.9e-19  Score=119.38  Aligned_cols=113  Identities=23%  Similarity=0.207  Sum_probs=62.7

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      ...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q 027158          104 SLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVL  136 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~  136 (227)
                      ..|++++|+..|++++.++      |.+..++..++.+.
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            5555555555555555555      55555555544443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.83  E-value=1.7e-19  Score=128.22  Aligned_cols=124  Identities=10%  Similarity=0.059  Sum_probs=96.3

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHcccH--HHH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMY--KQA  111 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~~~~--~~A  111 (227)
                      ...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +...|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4567777888888888888888888888888888888888888888888888888888888888888 6777887  888


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          112 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       112 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +.+|++++..+|+++.++..+|.++...|+   +++|+..|+++++..|+
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCC
Confidence            888888888888888888888888888888   88888888888888775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=8.6e-20  Score=155.31  Aligned_cols=157  Identities=17%  Similarity=0.059  Sum_probs=147.6

Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158           19 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLL--------EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA   90 (227)
Q Consensus        19 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~   90 (227)
                      .+|+++.+.+..+   ...|++++|+..+++++        ..+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            4677888877776   78899999999999999        899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhH
Q 027158           91 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGI  170 (227)
Q Consensus        91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  170 (227)
                      ++.+|+.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+   +++ +..|+++++++|+ +..+++++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~---~~~-~~~~~~al~~~P~-~~~a~~~l  540 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN---TDE-HKFYQTVWSTNDG-VISAAFGL  540 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---CCT-TCHHHHHHHHCTT-CHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHH-HHHHHHHHHhCCc-hHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999   999 9999999999996 99999999


Q ss_pred             HHHHHHHHhhhcC
Q 027158          171 CLCSSAIAQLTKG  183 (227)
Q Consensus       171 ~~~~~~~~~~~~~  183 (227)
                      +.++..+++...+
T Consensus       541 g~~~~~~g~~~~A  553 (681)
T 2pzi_A          541 ARARSAEGDRVGA  553 (681)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHH
Confidence            9999998876654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=5.9e-19  Score=143.54  Aligned_cols=180  Identities=12%  Similarity=-0.035  Sum_probs=149.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA---KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFP   75 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~   75 (227)
                      .+++++|+.+|++++..+|+++.++..++.++..   .++.++|+..++++++.+|+++.++..+|..+..    .|+++
T Consensus       151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~  230 (472)
T 4g1t_A          151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG  230 (472)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C
T ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH
Confidence            4579999999999999999999999988887654   4777889999999999999999998888876655    46788


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------
Q 027158           76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG--------------  141 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------  141 (227)
                      +|+.++++++..+|.++.++..+|.+|...|++++|+..|++++..+|+++.++..+|.+|...+.              
T Consensus       231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~  310 (472)
T 4g1t_A          231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR  310 (472)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988764321              


Q ss_pred             --CCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          142 --VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       142 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                        ...++.|+..|+++++++|. ....+..++.++...+++.++
T Consensus       311 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A  353 (472)
T 4g1t_A          311 KLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEA  353 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHH
Confidence              01267888888888888885 777888888888887765543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=1.6e-19  Score=138.61  Aligned_cols=156  Identities=13%  Similarity=0.159  Sum_probs=141.2

Q ss_pred             CCCChHHHHHHHHHHHHh--------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRRV   65 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~   65 (227)
                      ..|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++..        .|....++..+|
T Consensus        39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  118 (311)
T 3nf1_A           39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA  118 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            368999999999999995        5667788999999999999999999999999987        355678899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHH
Q 027158           66 AIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------QPTVPLYH  129 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~  129 (227)
                      .++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++..        .|....++
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  198 (311)
T 3nf1_A          119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK  198 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999999985        555778999999999999999999999999988        66667889


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          130 LAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ..+|.++...|+   +++|+..|+++++..|
T Consensus       199 ~~la~~~~~~g~---~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          199 NNLASCYLKQGK---FKQAETLYKEILTRAH  226 (311)
T ss_dssp             HHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Confidence            999999999999   9999999999998643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=7.1e-18  Score=137.16  Aligned_cols=174  Identities=14%  Similarity=-0.001  Sum_probs=150.9

Q ss_pred             CCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--
Q 027158            2 DCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK--   69 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--   69 (227)
                      .+|++++|+..+++++...        +..+.++..+|.++...  +++++|+.+|++++..+|+++.++..++.++.  
T Consensus       106 ~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          106 HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            3689999999999998863        24567788888777654  57999999999999999999999999998755  


Q ss_pred             -HcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCc
Q 027158           70 -AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  144 (227)
Q Consensus        70 -~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  144 (227)
                       ..++.++|+..++++++++|.++.++..+|..+..    .|++++|+.++++++..+|.++.++..+|.++...|+   
T Consensus       186 ~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---  262 (472)
T 4g1t_A          186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---  262 (472)
T ss_dssp             HHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---
T ss_pred             cCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc---
Confidence             45788999999999999999999999999877665    4678999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          145 ILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       145 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +++|+..|.++++..|+ +..+++.++.++.....
T Consensus       263 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~  296 (472)
T 4g1t_A          263 PDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVF  296 (472)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence            99999999999999996 88999999998876544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.82  E-value=7.4e-18  Score=127.78  Aligned_cols=160  Identities=13%  Similarity=0.013  Sum_probs=141.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCh
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNF   74 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~   74 (227)
                      .|++++|+..|++++.  |+++.+++.+|.++..    .+++++|+.+|+++++.+  ++.++..+|.++..    .+++
T Consensus        19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~   94 (273)
T 1ouv_A           19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT   94 (273)
T ss_dssp             TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH
Confidence            5789999999999988  7788899999999999    999999999999999875  78999999999999    9999


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHH
Q 027158           75 PTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNIL  146 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~  146 (227)
                      ++|+.+|+++++.  .++.++..+|.+|..    .+++++|+.+|++++..+  ++.++..+|.++..    .++   ++
T Consensus        95 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~---~~  167 (273)
T 1ouv_A           95 NKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD---LK  167 (273)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC---HH
T ss_pred             HHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC---HH
Confidence            9999999999886  488999999999999    999999999999999875  67888999999988    888   99


Q ss_pred             HHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          147 LAKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      +|+.+|+++++..   ++.+++.++.++..
T Consensus       168 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          168 KALASYDKACDLK---DSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence            9999999999874   45677777777766

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.82  E-value=3.6e-18  Score=124.63  Aligned_cols=131  Identities=15%  Similarity=0.058  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  104 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  104 (227)
                      ..++.+|.++...|++++|+..|++++  +| ++.++..+|.++...|++++|+..|++++..+|.++.+++.+|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            356788999999999999999999996  33 789999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          105 LQMYKQAAFCYEELILSQPTVP----------------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       105 ~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .|++++|+.+|++++...|.+.                .++..+|.++...|+   +++|+..|++++++.|+
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE  153 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCcc
Confidence            9999999999999999888776                899999999999999   99999999999999996

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.82  E-value=6.7e-21  Score=149.20  Aligned_cols=171  Identities=13%  Similarity=0.090  Sum_probs=149.3

Q ss_pred             ChHHHHHHHHH----HHHhCCCchhhHHHHHHHHH------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 027158            5 CLDVAKDCIKV----LQKQFPESKRVGRLEGILLE------------AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA   68 (227)
Q Consensus         5 ~~~~A~~~~~~----~~~~~p~~~~~~~~~a~~~~------------~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~   68 (227)
                      .+++|+..++.    .+...|..  ++...|....            ..+++++|+..+++++..+|.++.++..+|.++
T Consensus        80 ~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~  157 (336)
T 1p5q_A           80 GLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVY  157 (336)
T ss_dssp             HHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence            45666666666    55566654  3333333322            456778888899999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           69 KAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      ...|++++|+..|++++.++|.+               ..+|.++|.++...|++++|+.+|++++.++|+++.+++.+|
T Consensus       158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  237 (336)
T 1p5q_A          158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG  237 (336)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999               699999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      .++..+|+   +++|+..|+++++++|+ +..++..++.++..+++..
T Consensus       238 ~~~~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          238 EAHLAVND---FELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCC---HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence            99999999   99999999999999996 8899999999999988754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.1e-18  Score=117.23  Aligned_cols=118  Identities=9%  Similarity=0.016  Sum_probs=108.5

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158           55 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  134 (227)
Q Consensus        55 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  134 (227)
                      |..+..+..+|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhhhc------CCCchhHHHhHHHHHHH
Q 027158          135 VLYTLGGVDNILLAKKYYASTIDLT------GGKNTKALFGICLCSSA  176 (227)
Q Consensus       135 ~~~~~g~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~  176 (227)
                      ++..+|+   +++|+..|+++++++      |. +...+..+..+...
T Consensus        81 ~~~~~~~---~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKE---YASALETLDAARTKDAEVNNGSS-AREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTC---HHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHhC---HHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHHHHh
Confidence            9999999   999999999999999      74 66666666655543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.81  E-value=1.4e-18  Score=123.50  Aligned_cols=128  Identities=13%  Similarity=0.005  Sum_probs=118.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCh--HHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-AKAQGNF--PTAI   78 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~~~~~~~--~~A~   78 (227)
                      +.|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++  ++|+
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~  101 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR  101 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence            568899999999999999999999999999999999999999999999999999999999999999 8899998  9999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      ..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++...
T Consensus       102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            999999999999999999999999999999999999999999999886543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.81  E-value=3.3e-18  Score=119.71  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=124.9

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  102 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  102 (227)
                      .+..+..+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          103 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADV--LYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       103 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ...|++++|+.+|++++..+|.++.++..++.+  +...|+   +++|+..+.++....+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVD  148 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHHhc
Confidence            999999999999999999999999888555544  888899   9999999998876643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.81  E-value=1.3e-17  Score=128.26  Aligned_cols=174  Identities=9%  Similarity=-0.028  Sum_probs=160.8

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---CChH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIA----KAQ---GNFP   75 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~----~~~---~~~~   75 (227)
                      ..++|+.++.+++..+|++..+|..++.++...|  ++++++.++..++..+|.+..+|+.++.++    ...   ++++
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            3468999999999999999999999999999999  999999999999999999999999999999    666   7899


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---CCcHHHHHH
Q 027158           76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK--QAAFCYEELILSQPTVPLYHLAYADVLYTLGG---VDNILLAKK  150 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~~~~A~~  150 (227)
                      +++.++.++++.+|.+..+|...+.+....|.++  +++.++++++..+|.|..+|...+.++...|.   ...+++++.
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~  207 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN  207 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence            9999999999999999999999999999999998  99999999999999999999999999988764   112789999


Q ss_pred             HHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          151 YYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      ++.+++..+|. +..+|+.+..+...++.
T Consensus       208 ~~~~aI~~~p~-n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          208 YVKDKIVKCPQ-NPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence            99999999996 88899888887777654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.81  E-value=7.1e-19  Score=140.55  Aligned_cols=178  Identities=12%  Similarity=0.019  Sum_probs=152.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHc
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKAQ   71 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~   71 (227)
                      ..|++++|+..|++++...|+++    .++..+|.++...|++++|+..+++++..      .|....++..+|.++...
T Consensus        60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (411)
T 4a1s_A           60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM  139 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence            46899999999999999999876    57889999999999999999999999987      566778999999999999


Q ss_pred             CChHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHccc-----------------HHHHHHHHHHHHhhC------
Q 027158           72 GNFPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQM-----------------YKQAAFCYEELILSQ------  122 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~------  122 (227)
                      |++++|+.++++++..      .|....++..+|.++...|+                 +++|+.++++++.+.      
T Consensus       140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~  219 (411)
T 4a1s_A          140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR  219 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999998      55667799999999999999                 999999999998764      


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-Cc----hhHHHhHHHHHHHHHhhhc
Q 027158          123 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KN----TKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       123 p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~  182 (227)
                      |....++..+|.++...|+   +++|+.+|++++++.+. .+    ...+..++.++...++...
T Consensus       220 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  281 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGD---FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED  281 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence            2334589999999999999   99999999999998774 11    2266677777766665443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.81  E-value=5e-18  Score=119.24  Aligned_cols=124  Identities=16%  Similarity=0.078  Sum_probs=104.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      .+.++..+..+|.++...|++++|+..|+++++++|.++.+|..+|.++...|++++|+.+|++++.++|+++.+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44556788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhhcCCCchh--HHHhHHHHHHHHHhhh
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTK--ALFGICLCSSAIAQLT  181 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~  181 (227)
                      .++..+|+   +++|+..|+++++++|+ +..  ...++..+..++.+..
T Consensus        87 ~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           87 LARFDMAD---YKGAKEAYEKGIEAEGN-GGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccC---HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHHHHH
Confidence            99999999   99999999999999886 544  4556666666666644

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=1.7e-18  Score=116.66  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=91.4

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      |.+...+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|.++.++..+|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ++...|++++|+.+|++++..+|.+..++..++.++...|+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            77777777777777777777777777777777777766653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.81  E-value=1.3e-18  Score=133.65  Aligned_cols=151  Identities=17%  Similarity=0.118  Sum_probs=129.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHH
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWR   96 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~   96 (227)
                      ..|.++...|++++|+..|.+++...+.      ...++..+|.++...|++++|+.+|++++++.|..      ..++.
T Consensus        42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~  121 (292)
T 1qqe_A           42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (292)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3477888999999999999999998432      25789999999999999999999999999998754      56899


Q ss_pred             HHHHHHHHc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch-----
Q 027158           97 ELAEIYVSL-QMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT-----  164 (227)
Q Consensus        97 ~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~-----  164 (227)
                      ++|.+|... |++++|+.+|++++.+.|.+      ..++.++|.++..+|+   +++|+.+|++++++.|+...     
T Consensus       122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ---YIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhcCCcccHHH
Confidence            999999996 99999999999999998754      4678999999999999   99999999999999986221     


Q ss_pred             -hHHHhHHHHHHHHHhhhc
Q 027158          165 -KALFGICLCSSAIAQLTK  182 (227)
Q Consensus       165 -~~~~~l~~~~~~~~~~~~  182 (227)
                       ..+.+++.|+..+++...
T Consensus       199 ~~~~~~lg~~~~~~g~~~~  217 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVA  217 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHH
Confidence             156788888888776544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.80  E-value=1.4e-19  Score=131.17  Aligned_cols=120  Identities=16%  Similarity=0.037  Sum_probs=70.0

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----------------VLHKRRVAIAKAQGNFPTAIEWLNKYL   85 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~l   85 (227)
                      .....+..+|..+...|++++|+..|.+++...|.++                .++..+|.++...|++++|+.++++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3344455556666666666666666666666555554                555555555555555555555555555


Q ss_pred             HHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           86 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        86 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.++...|+
T Consensus       116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.80  E-value=8.5e-19  Score=132.58  Aligned_cols=155  Identities=17%  Similarity=0.125  Sum_probs=138.9

Q ss_pred             CCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRRV   65 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~   65 (227)
                      ..|++++|+..+++++...        |....++..+|.++...|++++|+..+.+++..        +|....++..+|
T Consensus        55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  134 (283)
T 3edt_B           55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA  134 (283)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            3689999999999999873        556778999999999999999999999999998        466678999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---------------
Q 027158           66 AIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ---------------  122 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------  122 (227)
                      .++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...               
T Consensus       135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  214 (283)
T 3edt_B          135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI  214 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence            9999999999999999999998        66678899999999999999999999999999762               


Q ss_pred             ----------------------------------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          123 ----------------------------------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       123 ----------------------------------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                                                        |....++..+|.++...|+   +++|...|+++++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~  282 (283)
T 3edt_B          215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK---LEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhh
Confidence                                              3445678999999999999   999999999998753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.80  E-value=3.4e-18  Score=114.55  Aligned_cols=122  Identities=18%  Similarity=0.120  Sum_probs=106.2

Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 027158           20 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA   99 (227)
Q Consensus        20 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la   99 (227)
                      .|.++..+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            34566778888888888889999999998888888888888888888888888888999899888888888888888888


Q ss_pred             HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158          100 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      .++...|++++|+.+|++++..+|+++.++..++.++...|+
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            888888889889888888888888888888888888888876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.80  E-value=2e-18  Score=121.22  Aligned_cols=116  Identities=20%  Similarity=0.132  Sum_probs=109.1

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      +.+...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|.++.+|+.+|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  136 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  136 (227)
                      ++...|++++|+.+|++++.++|+++.++...+...
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            999999999999999999999999988766665443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.80  E-value=4.6e-18  Score=128.39  Aligned_cols=177  Identities=16%  Similarity=0.036  Sum_probs=152.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|
T Consensus        55 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  134 (275)
T 1xnf_A           55 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL  134 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------------------------------------
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------------------------------------  125 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------  125 (227)
                      +++++.+|.++.....++.. ...|++++|+..+++++...|.+                                    
T Consensus       135 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  213 (275)
T 1xnf_A          135 LAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH  213 (275)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccccccc
Confidence            99999999998766666544 66699999999998888766643                                    


Q ss_pred             -HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcCCCc
Q 027158          126 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK  186 (227)
Q Consensus       126 -~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  186 (227)
                       +.++..+|.++...|+   +++|+..|+++++.+|+ +...+   ..+...++++..+...
T Consensus       214 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~---~~~~~~l~~~~~a~~~  268 (275)
T 1xnf_A          214 LSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH-NFVEH---RYALLELSLLGQDQDD  268 (275)
T ss_dssp             HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT-TCHHH---HHHHHHHHHHHHC---
T ss_pred             ccHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCch-hHHHH---HHHHHHHHHHHhhHHH
Confidence             5678999999999999   99999999999999995 54444   3345556666555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.80  E-value=1.3e-18  Score=138.35  Aligned_cols=156  Identities=13%  Similarity=0.019  Sum_probs=139.1

Q ss_pred             CCCChHHHHHHHHHHHHh---CCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQ---FPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PVLHKRRVAIA   68 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~l~~~~   68 (227)
                      ..|++++|+..+++++..   .|+   ...++..+|.++...|++++|+.++.++++..+..       ..++..+|.++
T Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            368999999999999987   233   45789999999999999999999999999984433       46889999999


Q ss_pred             HHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHH
Q 027158           69 KAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL-----SQ-PTVPLYHLAYADVL  136 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~  136 (227)
                      ...|++++|+.+|++++++.|..      ..++.++|.+|...|++++|+.+|++++.     .+ |..+.++..+|.++
T Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  274 (383)
T 3ulq_A          195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH  274 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            99999999999999999986644      35899999999999999999999999998     46 77788999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          137 YTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ...|+   +++|..++++++++.+
T Consensus       275 ~~~g~---~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          275 YKLGK---IDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHTTC---HHHHHHHHHHHHHHHH
T ss_pred             HHCCC---HHHHHHHHHHHHHHHH
Confidence            99999   9999999999999864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.80  E-value=8.2e-18  Score=127.51  Aligned_cols=160  Identities=15%  Similarity=0.044  Sum_probs=146.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCh
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNF   74 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~   74 (227)
                      .+++++|+..|++++...  ++.++..+|.++..    .+++++|+.+|+++++.+  ++.++..+|.++..    .+++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~  130 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF  130 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence            689999999999999875  78999999999999    999999999999999874  89999999999999    9999


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHH
Q 027158           75 PTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNIL  146 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~  146 (227)
                      ++|+.+|+++++.+  ++.++..+|.++..    .+++++|+.+|++++..  .++.++..+|.++..    .++   ++
T Consensus       131 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~---~~  203 (273)
T 1ouv_A          131 KKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN---FK  203 (273)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC---HH
T ss_pred             HHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc---HH
Confidence            99999999999875  78999999999999    99999999999999987  468899999999999    899   99


Q ss_pred             HHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          147 LAKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      +|+.+|+++++..|   ..+++.++.++..
T Consensus       204 ~A~~~~~~a~~~~~---~~a~~~l~~~~~~  230 (273)
T 1ouv_A          204 EALARYSKACELEN---GGGCFNLGAMQYN  230 (273)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCC---HHHHHHHHHHHHc
Confidence            99999999999865   4566777777664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.79  E-value=2.9e-18  Score=136.32  Aligned_cols=178  Identities=13%  Similarity=-0.005  Sum_probs=150.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHc
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKAQ   71 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~   71 (227)
                      ..|++++|+..|++++...|.++    .++..+|.++...|++++|+.++++++..      .|....++..+|.++...
T Consensus        21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  100 (406)
T 3sf4_A           21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL  100 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence            46899999999999999999874    57889999999999999999999999887      344567899999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHccc--------------------HHHHHHHHHHHHhh----
Q 027158           72 GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQAAFCYEELILS----  121 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~----  121 (227)
                      |++++|+.++++++.+.|..      +.++..+|.++...|+                    +++|+.++++++.+    
T Consensus       101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~  180 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL  180 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987654      5589999999999999                    99999999999876    


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-C----chhHHHhHHHHHHHHHhhhc
Q 027158          122 --QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-K----NTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       122 --~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~  182 (227)
                        .|....++..+|.++...|+   +++|+..|++++++.|. .    ....+..++.++...++..+
T Consensus       181 ~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          181 GDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTB---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence              23345688999999999999   99999999999988664 1    12366777777777666543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=1.3e-18  Score=133.50  Aligned_cols=157  Identities=18%  Similarity=0.148  Sum_probs=140.6

Q ss_pred             CCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRV   65 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~   65 (227)
                      ..|++++|+..+++++...        |....++..+|.++...|++++|+.++++++...        |....++..+|
T Consensus        81 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  160 (311)
T 3nf1_A           81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA  160 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3689999999999999873        5567789999999999999999999999999874        55668899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh----------------
Q 027158           66 AIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS----------------  121 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------  121 (227)
                      .++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++..                
T Consensus       161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  240 (311)
T 3nf1_A          161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI  240 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence            9999999999999999999998        6666789999999999999999999999999974                


Q ss_pred             ---------------------------------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          122 ---------------------------------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       122 ---------------------------------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                                                       .|....++..+|.++...|+   +++|..+|++++++.|.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK---FEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhc
Confidence                                             35566789999999999999   99999999999998873

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.79  E-value=3.1e-18  Score=142.87  Aligned_cols=137  Identities=13%  Similarity=0.017  Sum_probs=115.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158           37 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE  116 (227)
Q Consensus        37 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  116 (227)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          117 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       117 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      +++..+|+++.++..+|.++...|+   +++|+..|+++++.+|+ +..++..++.++..+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence            9999999999999999999999999   99999999999999996 888999999999887

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.79  E-value=8.7e-19  Score=126.91  Aligned_cols=154  Identities=14%  Similarity=0.014  Sum_probs=128.1

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH------------
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------------   92 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~------------   92 (227)
                      ......+.+....|+++.|.+.+.......+.....+..+|.++...|++++|+..|++++...|.++            
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   84 (198)
T 2fbn_A            5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK   84 (198)
T ss_dssp             -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred             ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence            33444566667778888888888777777777788999999999999999999999999999999987            


Q ss_pred             ----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHH
Q 027158           93 ----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  168 (227)
Q Consensus        93 ----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~  168 (227)
                          .++.++|.++...|++++|+.++++++..+|.++.+++.+|.++..+|+   +++|+..|+++++++|+ +..++.
T Consensus        85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~  160 (198)
T 2fbn_A           85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPN-NLDIRN  160 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCC-cHHHHH
Confidence                8999999999999999999999999999999999999999999999999   99999999999999996 888999


Q ss_pred             hHHHHHHHHHhhhc
Q 027158          169 GICLCSSAIAQLTK  182 (227)
Q Consensus       169 ~l~~~~~~~~~~~~  182 (227)
                      .+..+...+++..+
T Consensus       161 ~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          161 SYELCVNKLKEARK  174 (198)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.78  E-value=2.3e-17  Score=110.89  Aligned_cols=123  Identities=23%  Similarity=0.209  Sum_probs=119.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|+..+++++...|.++.++..+|.++...|++++|...+++++...|.++.++..+|.++...|++++|+..++
T Consensus        14 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   93 (136)
T 2fo7_A           14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ   93 (136)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      +++...|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus        94 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           94 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999998863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.78  E-value=4.3e-18  Score=131.53  Aligned_cols=178  Identities=13%  Similarity=-0.012  Sum_probs=151.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHc
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKAQ   71 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~   71 (227)
                      ..|++++|+..+++++...|+++    .++..+|.++...|++++|+..+++++..      .|....++..+|.++...
T Consensus        17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL   96 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            46899999999999999999874    67889999999999999999999999887      445567899999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHccc--------------------HHHHHHHHHHHHhhC---
Q 027158           72 GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQAAFCYEELILSQ---  122 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~---  122 (227)
                      |++++|+..+++++...|..      ..++..+|.++...|+                    +++|+.++++++...   
T Consensus        97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~  176 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL  176 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987654      3489999999999999                    999999999998762   


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-C----chhHHHhHHHHHHHHHhhhc
Q 027158          123 ---PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-K----NTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       123 ---p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~  182 (227)
                         |....++..+|.++...|+   +++|+..++++++..+. .    ....+..++.++...++...
T Consensus       177 ~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  241 (338)
T 3ro2_A          177 GDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  241 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence               3335689999999999999   99999999999988654 1    13367777777777776543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.78  E-value=3e-17  Score=108.95  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=95.0

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      ..++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            56777788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158          104 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      ..|++++|+.++++++..+|+++.++..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            8888888888888888888888888888887776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=1.7e-17  Score=138.09  Aligned_cols=172  Identities=11%  Similarity=-0.010  Sum_probs=157.8

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--   72 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--   72 (227)
                      ..++|+..+++++..+|++..+|..++.++...|+          +++++..+.+++..+|.+..+|..++.++...|  
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            34688999999999999999999999999999988          999999999999999999999999999999999  


Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC---------
Q 027158           73 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV---------  142 (227)
Q Consensus        73 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---------  142 (227)
                      ++++++.++.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++..++..         
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~  203 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence            6799999999999999999999999999999999 999999999999999999999999999999886221         


Q ss_pred             --CcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          143 --DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       143 --~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                        +.++++++++.+++..+|+ +..+|+....+....
T Consensus       204 ~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~  239 (567)
T 1dce_A          204 PENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRA  239 (567)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcC
Confidence              3389999999999999996 777877766666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.78  E-value=2.4e-19  Score=145.91  Aligned_cols=150  Identities=13%  Similarity=0.105  Sum_probs=126.5

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVAIA   68 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~   68 (227)
                      +++++|+..++..+...|.....+..+|..++..|++++|+..|++++..+|.+               ..++.++|.++
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666777777778888889999999999999999999999999999988               68899999999


Q ss_pred             HHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 027158           69 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  148 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  148 (227)
                      ...|++++|+..|+++++++|+++.+|+++|.+|...|++++|+..|++++.++|++..++..++.++...|+   +.+|
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a  404 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNER  404 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998   8776


Q ss_pred             HH-HHHHHh
Q 027158          149 KK-YYASTI  156 (227)
Q Consensus       149 ~~-~~~~~~  156 (227)
                      .. .|.+++
T Consensus       405 ~~~~~~~~f  413 (457)
T 1kt0_A          405 DRRIYANMF  413 (457)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            64 344443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.78  E-value=7.6e-18  Score=113.45  Aligned_cols=99  Identities=11%  Similarity=0.104  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH-------HHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRE   97 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~   97 (227)
                      .++..+|..++..|++++|+.+|+++++++|+++.++.++|.++...|++++|+..|+++++++|++.       .++..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666555442       34555


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           98 LAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      +|.++...|++++|+.+|++++...|
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            55555555555555555555555544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.78  E-value=2.4e-18  Score=136.78  Aligned_cols=175  Identities=15%  Similarity=0.005  Sum_probs=150.5

Q ss_pred             hHHHHHHHHHHHHhC------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCC
Q 027158            6 LDVAKDCIKVLQKQF------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGN   73 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~   73 (227)
                      +++|+..+++++...      |....++..+|.++...|++++|+..+++++...|...      .++..+|.++...|+
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            889999999888763      23456788999999999999999999999998865443      389999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC
Q 027158           74 FPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGG  141 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~  141 (227)
                      +++|+.++++++...|..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|+
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  322 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN  322 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            999999999999998766      7789999999999999999999999999876543      6689999999999999


Q ss_pred             CCcHHHHHHHHHHHhhhcCC-----CchhHHHhHHHHHHHHHhhhcC
Q 027158          142 VDNILLAKKYYASTIDLTGG-----KNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       142 ~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                         +++|+.+|++++++.+.     ....++..++.++..+++....
T Consensus       323 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  366 (406)
T 3sf4_A          323 ---HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST  366 (406)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ---HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence               99999999999988543     2466778888888888875443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.77  E-value=1.3e-17  Score=113.23  Aligned_cols=121  Identities=9%  Similarity=-0.041  Sum_probs=74.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      +|.++..+..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.++++++..+|+++.++..+|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhhcCC----CchhHHHhHHHHHHHH
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDLTGG----KNTKALFGICLCSSAI  177 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~  177 (227)
                      .++...|+   +++|+..|++++++.|+    ........+..+....
T Consensus        85 ~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           85 QCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            66666666   66666666666666553    1334444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.77  E-value=2.6e-16  Score=121.77  Aligned_cols=171  Identities=12%  Similarity=0.087  Sum_probs=151.9

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL--WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLN   82 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~   82 (227)
                      +++++.+++.++..+|++..+|..++.++...++  +++++.++.+++..+|.+..+|...+.+....|. +++++.++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            6789999999999999999999999999999994  9999999999999999999999999999999998 599999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCC-----
Q 027158           83 KYLETFMADHDAWRELAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGV-----  142 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~-----  142 (227)
                      ++++.+|.+..+|..++.++...              +.++++++++.+++..+|++..+|+.+..++... |..     
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~  249 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE  249 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence            99999999999999999999887              6799999999999999999999998666665554 310     


Q ss_pred             --CcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          143 --DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       143 --~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                        +.+++++..+.+++++.|+ +...+.++++....+
T Consensus       250 ~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~  285 (331)
T 3dss_A          250 KSTVLQSELESCKELQELEPE-NKWCLLTIILLMRAL  285 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhh
Confidence              2389999999999999996 777766666554444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.77  E-value=1.3e-17  Score=111.35  Aligned_cols=101  Identities=19%  Similarity=0.036  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  105 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  105 (227)
                      .++.+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccHHHHHHHHHHHHhhCCCCH
Q 027158          106 QMYKQAAFCYEELILSQPTVP  126 (227)
Q Consensus       106 ~~~~~A~~~~~~al~~~p~~~  126 (227)
                      |++++|+.+|++++..+|.+.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            777777777777777776553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.77  E-value=2.6e-17  Score=110.75  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=113.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      .|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      .++...|+   +++|+..|+++++.+|. +...+..++.++...+
T Consensus        92 ~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           92 AALEAMKD---YTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhh---HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            99999999   99999999999999995 8888888888776543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.77  E-value=4e-17  Score=135.10  Aligned_cols=169  Identities=11%  Similarity=0.005  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHc
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEA-------KGLWA-------EAEKAYSSLLE-DNPLDPVLHKRRVAIAKAQ   71 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~   71 (227)
                      .+++..|++++..+|.++.+|+.+|..+..       .|+++       +|...|+++++ ..|++..+|..++.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            367789999999999999999999998886       68876       89999999997 7899999999999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCCCcHHHHH
Q 027158           72 GNFPTAIEWLNKYLETFMADH-DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV-LYTLGGVDNILLAK  149 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~~~~A~  149 (227)
                      |++++|...|+++++..|.++ .+|..+|.++...|++++|..+|+++++..|.+...+...+.+ +...|+   +++|.
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~---~~~A~  411 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAF  411 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC---HHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC---hhHHH
Confidence            999999999999999999885 5899999999999999999999999999888877766666655 345888   99999


Q ss_pred             HHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          150 KYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      ..|+++++..|+ ++..+..++......++
T Consensus       412 ~~~e~al~~~p~-~~~~~~~~~~~~~~~g~  440 (530)
T 2ooe_A          412 KIFELGLKKYGD-IPEYVLAYIDYLSHLNE  440 (530)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHCCC-CHHHHHHHHHHHHhCCC
Confidence            999999999985 77777777666554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.77  E-value=3.3e-17  Score=120.01  Aligned_cols=158  Identities=10%  Similarity=0.002  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChHHHHHHHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG----NFPTAIEWLN   82 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~   82 (227)
                      .+|+..|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3578888998875  68999999999999999999999999999875  689999999999998 7    8999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCCCcHHHHHHHH
Q 027158           83 KYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYT----LGGVDNILLAKKYY  152 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~~~~A~~~~  152 (227)
                      ++.  .+.++.+++.+|.+|..    .+++++|+.+|+++....|  .++.+++.+|.+|..    .++   +++|+.+|
T Consensus        78 ~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~  152 (212)
T 3rjv_A           78 KAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF  152 (212)
T ss_dssp             HHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred             HHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence            995  57899999999999998    8999999999999999988  458999999999998    667   99999999


Q ss_pred             HHHhhhcCCCchhHHHhHHHHHHH
Q 027158          153 ASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      +++++. |+ +..+++.++.++..
T Consensus       153 ~~A~~~-~~-~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          153 KGSSSL-SR-TGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHT-SC-TTHHHHHHHHHHHH
T ss_pred             HHHHHc-CC-CHHHHHHHHHHHHc
Confidence            999998 53 66688888888765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.77  E-value=6.4e-17  Score=106.33  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      +..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34556666666777777777777777777777666666677777777777777777777777777766667777777777


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158          104 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  136 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  136 (227)
                      ..|++++|+.++++++..+|+++.++..++.+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            777777777777777777776666666666543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.76  E-value=2.8e-18  Score=137.12  Aligned_cols=177  Identities=15%  Similarity=0.071  Sum_probs=144.4

Q ss_pred             CCChHHHHHHHHHHHHh------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKA   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~   70 (227)
                      .|++++|+..+++++..      .|....++..+|.++...|++++|+.++++++..      .|....++..+|.++..
T Consensus        99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A           99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            57899999999999887      4566778889999999999999999999999887      45566788899999999


Q ss_pred             cCC-----------------hHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-
Q 027158           71 QGN-----------------FPTAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-  126 (227)
Q Consensus        71 ~~~-----------------~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-  126 (227)
                      .|+                 +++|+.++++++++.      |....++..+|.++...|++++|+.++++++...|... 
T Consensus       179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (411)
T 4a1s_A          179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD  258 (411)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence            999                 999999999988764      23355888999999999999999999999998776432 


Q ss_pred             -----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-----CchhHHHhHHHHHHHHHhhhc
Q 027158          127 -----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       127 -----~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~  182 (227)
                           .++..+|.++...|+   +++|+.+|++++...+.     .....+..++.++...++..+
T Consensus       259 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  321 (411)
T 4a1s_A          259 RAAERRANSNLGNSHIFLGQ---FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT  321 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence                 278899999999999   99999999999988764     125566777777777666543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.76  E-value=1.2e-17  Score=112.47  Aligned_cols=102  Identities=12%  Similarity=0.098  Sum_probs=95.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-------HHH
Q 027158           57 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-------LYH  129 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~  129 (227)
                      ...++..+|..++..|++++|+.+|+++++++|+++.+|.++|.+|...|+|++|+..|++++.++|++.       .++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999988653       478


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          130 LAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .++|.++..+|+   +++|+..|++++...|+
T Consensus        87 ~~lg~~~~~~~~---~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           87 SRAGNAFQKQND---LSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHhhCcC
Confidence            899999999999   99999999999999885

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.76  E-value=9.8e-17  Score=108.82  Aligned_cols=122  Identities=16%  Similarity=-0.008  Sum_probs=111.9

Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHH
Q 027158           19 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL   98 (227)
Q Consensus        19 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l   98 (227)
                      ..|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.+|..+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcC
Q 027158           99 AEIYVSLQMYKQAAFCYEELILSQPT-----VPLYHLAYADVLYTLG  140 (227)
Q Consensus        99 a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g  140 (227)
                      |.++...|++++|+.+|++++..+|+     +..+...+..+.....
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987     6667777766655443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=4.7e-17  Score=134.66  Aligned_cols=156  Identities=15%  Similarity=0.104  Sum_probs=144.8

Q ss_pred             CCChH-------HHHHHHHHHHH-hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCC
Q 027158            3 CQCLD-------VAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGN   73 (227)
Q Consensus         3 ~~~~~-------~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~   73 (227)
                      .|+++       +|..+|++++. ..|++..++..+|.++...|++++|...|+++++..|.++ .+|..++.++...|+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  371 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG  371 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence            57776       99999999997 7999999999999999999999999999999999999986 699999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 027158           74 FPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY  152 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~  152 (227)
                      +++|+..|+++++..|.+...+...+.+ +...|++++|..+|+++++..|+++.+|..++.++...|+   .++|...|
T Consensus       372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~  448 (530)
T 2ooe_A          372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLF  448 (530)
T ss_dssp             HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHH
Confidence            9999999999999999888887777766 3468999999999999999999999999999999999999   99999999


Q ss_pred             HHHhhhcCC
Q 027158          153 ASTIDLTGG  161 (227)
Q Consensus       153 ~~~~~~~~~  161 (227)
                      ++++...|.
T Consensus       449 ~~al~~~~~  457 (530)
T 2ooe_A          449 ERVLTSGSL  457 (530)
T ss_dssp             HHHHHSCCS
T ss_pred             HHHHhccCC
Confidence            999998764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.76  E-value=4e-17  Score=109.27  Aligned_cols=123  Identities=18%  Similarity=0.145  Sum_probs=115.9

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 027158           53 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  132 (227)
Q Consensus        53 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  132 (227)
                      .+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          133 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      |.++...|+   +++|+..|+++++..|+ +...+..++.++..+++
T Consensus        87 ~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           87 GLALSSLNK---HVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCC---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            999999999   99999999999999995 88888899888887765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.76  E-value=2.4e-16  Score=121.93  Aligned_cols=161  Identities=11%  Similarity=0.027  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--h
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN--F   74 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~--~   74 (227)
                      ++|+.++..++..+|++..+|...+.++...+.          +++++.++..++..+|.+..+|..++.++...|.  +
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence            489999999999999999999999999988776          6899999999999999999999999999999984  8


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------C
Q 027158           75 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG-----------V  142 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~  142 (227)
                      ++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.|..+|..++.++...+.           .
T Consensus       127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~  206 (331)
T 3dss_A          127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  206 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence            999999999999999999999999999999998 6999999999999999999999999999988721           0


Q ss_pred             CcHHHHHHHHHHHhhhcCCCchhHHH
Q 027158          143 DNILLAKKYYASTIDLTGGKNTKALF  168 (227)
Q Consensus       143 ~~~~~A~~~~~~~~~~~~~~~~~~~~  168 (227)
                      +.+++++.++.+++..+|+ +..+|+
T Consensus       207 ~~~~eEle~~~~ai~~~P~-d~SaW~  231 (331)
T 3dss_A          207 NVLLKELELVQNAFFTDPN-DQSAWF  231 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC-CHHHHH
Confidence            2389999999999999996 777775

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.76  E-value=1.4e-17  Score=127.82  Aligned_cols=156  Identities=9%  Similarity=-0.014  Sum_probs=131.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchh------hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAK   69 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~   69 (227)
                      ..|++++|...+++++...+..+.      .+..+|.++...+++++|+..+++++...+..      ..++..+|.+|.
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            368999999999999998776554      23357888888899999999999999864432      347899999999


Q ss_pred             HcCChHHHHHHHHHHHHHcC---CC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 027158           70 AQGNFPTAIEWLNKYLETFM---AD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVL  136 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l~~~p---~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~  136 (227)
                      ..|++++|+.+|+++++...   .+    ..+++++|.+|...|+|++|+.++++++.+.+..      ..++..+|.++
T Consensus       167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  246 (293)
T 3u3w_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999996422   22    4588999999999999999999999999876533      77899999999


Q ss_pred             HHcC-CCCcHHHHHHHHHHHhhhcC
Q 027158          137 YTLG-GVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       137 ~~~g-~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ..+| .   +++|+.+|++++.+..
T Consensus       247 ~~~g~~---~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          247 RKLEYE---EAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHTTCC---HHHHHHHHHHHHHHHH
T ss_pred             HHhCCc---HHHHHHHHHHHHHHHH
Confidence            9999 5   6999999999998754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.76  E-value=7e-17  Score=113.09  Aligned_cols=119  Identities=9%  Similarity=0.001  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH------------------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLET------------------FMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      ..+...|..++..|++++|+..|.+++..                  +|.+..+|.++|.++...|+|++|+..+++++.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34455555555555555555555555555                  677788999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch-hHHHhHHHHHHHHHhhh
Q 027158          121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT-KALFGICLCSSAIAQLT  181 (227)
Q Consensus       121 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  181 (227)
                      ++|+++.+++.+|.++..+|+   +++|+..|++++.++|+ +. .....+..+...+.+..
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWK---LDEAEEDLKLLLRNHPA-AASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCcchHHHHHHHHHHHHHhc---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   99999999999999996 65 55667777777666544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.76  E-value=2.1e-17  Score=119.41  Aligned_cols=174  Identities=12%  Similarity=0.096  Sum_probs=138.4

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCCh
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE------DNPLDPVLHKRRVAIAKAQGNF   74 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~~l~~~~~~~~~~   74 (227)
                      +..|++++|...++.+....+....++..+|.++...|++++|+.++++++.      ..|....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            4679999999966655443336788999999999999999999999999999      3455568899999999999999


Q ss_pred             HHHHHHHHHHHHH---cCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHHcCC
Q 027158           75 PTAIEWLNKYLET---FMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVP----LYHLAYADVLYTLGG  141 (227)
Q Consensus        75 ~~A~~~~~~~l~~---~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~  141 (227)
                      ++|+..+++++..   .+++    ..++..+|.++...|++++|+.++++++...+  .++    .++..+|.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999999998   4433    45789999999999999999999999997642  222    356899999999999


Q ss_pred             CCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          142 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                         +++|..++++++++...  ....++.+.+...+..
T Consensus       163 ---~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~  195 (203)
T 3gw4_A          163 ---LLEAQQHWLRARDIFAE--LEDSEAVNELMTRLNG  195 (203)
T ss_dssp             ---HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHHHHHH--cCCHHHHHHHHhcccc
Confidence               99999999999998653  2222344555555444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.76  E-value=1.4e-16  Score=122.16  Aligned_cols=156  Identities=10%  Similarity=-0.003  Sum_probs=118.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAK   69 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~   69 (227)
                      ..|++++|+..+.+++...|...      ..+..+|.++...|++++|+..+++++...+..      ..++..+|.++.
T Consensus        87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 2qfc_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            35788888888888888776533      234567777788888888888888888764433      457788888888


Q ss_pred             HcCChHHHHHHHHHHH---HHcCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q 027158           70 AQGNFPTAIEWLNKYL---ETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVL  136 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l---~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~  136 (227)
                      ..|++++|+.+|++++   +..|.+.    .+++++|.+|...|+|++|+.++++++.+.+.      ...++.++|.++
T Consensus       167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y  246 (293)
T 2qfc_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            8888888888888888   4455543    57888888888888888888888888876532      156788888888


Q ss_pred             HHcCCCCcHHHH-HHHHHHHhhhcC
Q 027158          137 YTLGGVDNILLA-KKYYASTIDLTG  160 (227)
Q Consensus       137 ~~~g~~~~~~~A-~~~~~~~~~~~~  160 (227)
                      ..+|+   +++| ..+|++++.+..
T Consensus       247 ~~~g~---~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          247 RKLEY---EEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHTTC---CHHHHHHHHHHHHHHHH
T ss_pred             HHcCC---cHHHHHHHHHHHHHHHH
Confidence            88888   8888 777888877643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.76  E-value=2.4e-17  Score=113.60  Aligned_cols=114  Identities=15%  Similarity=0.078  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-------CH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhh-----
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-------DH-----DAWRELAEIYVSLQMYKQAAFCYEELILS-----  121 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~-------~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~-----  121 (227)
                      ..+...|..++..|++++|+..|+++++++|+       +.     .+|.++|.++...|+|++|+.+|++++.+     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            44566677777777777777777777777776       43     39999999999999999999999999999     


Q ss_pred             --CCCCHHHH----HHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          122 --QPTVPLYH----LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       122 --~p~~~~~~----~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                        +|++..+|    +++|.++..+|+   +++|+..|+++++++|+ +....-.+..+...
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~-d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEE-RKGETPGKERMMEV  148 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-CCSCCTTHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence              99999999    999999999999   99999999999999996 55444444444333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.76  E-value=1.5e-16  Score=123.66  Aligned_cols=174  Identities=11%  Similarity=0.024  Sum_probs=158.4

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-ChHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-G-NFPTAIEW   80 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~-~~~~A~~~   80 (227)
                      +..++|+.++.+++..+|++..+|..++.++...| .+++++.++..++..+|.+..+|..++.++... + ++++++.+
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            35578999999999999999999999999999999 599999999999999999999999999999988 8 89999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC----CcHHHH
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYK--------QAAFCYEELILSQPTVPLYHLAYADVLYTLGGV----DNILLA  148 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~~~~A  148 (227)
                      +.++++.+|.+..+|...+.+....|.++        ++++++++++..+|.|..+|...+.++...+..    ..++++
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eE  227 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDE  227 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence            99999999999999999999999999888        999999999999999999999999999988751    126899


Q ss_pred             HHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158          149 KKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      ++++.+++..+|+ +..+|+.+.-+....+
T Consensus       228 Le~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          228 LIYILKSIHLIPH-NVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence            9999999999996 8888876555555433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.76  E-value=4.5e-17  Score=118.76  Aligned_cols=140  Identities=16%  Similarity=0.069  Sum_probs=124.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++   +.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|
T Consensus        18 ~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~   94 (213)
T 1hh8_A           18 DKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL   94 (213)
T ss_dssp             HTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHH
Confidence            4689999999999985   3378899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCH----------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 027158           82 NKYLETFMADH----------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  145 (227)
Q Consensus        82 ~~~l~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  145 (227)
                      +++++..|.+.                .++..+|.++...|++++|+.+|++++..+|++..            +.   .
T Consensus        95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~---~  159 (213)
T 1hh8_A           95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH------------SK---I  159 (213)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG------------GH---H
T ss_pred             HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc------------ch---H
Confidence            99999888766                99999999999999999999999999999998632            34   6


Q ss_pred             HHHHHHHHHHhhhc
Q 027158          146 LLAKKYYASTIDLT  159 (227)
Q Consensus       146 ~~A~~~~~~~~~~~  159 (227)
                      ..|+..+.+.....
T Consensus       160 ~~a~~~~~~~~~~~  173 (213)
T 1hh8_A          160 DKAMECVWKQKLYE  173 (213)
T ss_dssp             HHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhccccc
Confidence            66666665544433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.75  E-value=1.4e-17  Score=128.71  Aligned_cols=175  Identities=12%  Similarity=0.061  Sum_probs=121.3

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCc-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPES-----------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKR   63 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~   63 (227)
                      |..|++++|..+++++....+..           ...+...|.++...|++++|+..|.+++...+..      ..++..
T Consensus         2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~   81 (307)
T 2ifu_A            2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ   81 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45677788888887777654321           1234455677777888888888888887764422      356777


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHH
Q 027158           64 RVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLA  131 (227)
Q Consensus        64 l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  131 (227)
                      +|.++...|++++|+.+|++++++.+..      ..++.++|.+|.. |++++|+.+|++++.+.|..      ..++.+
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            8888888888888888888888775432      4567788888877 88888888888888776543      456778


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCc-----hhHHHhHHHHHHHHHh
Q 027158          132 YADVLYTLGGVDNILLAKKYYASTIDLTGGKN-----TKALFGICLCSSAIAQ  179 (227)
Q Consensus       132 la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~  179 (227)
                      +|.++..+|+   +++|+.+|++++.+.|...     ...+.+++.++..+++
T Consensus       161 lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~  210 (307)
T 2ifu_A          161 ASRLLVRQQK---FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD  210 (307)
T ss_dssp             HHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCC---HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence            8888888888   8888888888887765411     2355566666665444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.75  E-value=2e-16  Score=121.58  Aligned_cols=169  Identities=11%  Similarity=0.084  Sum_probs=154.8

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH--
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILL----EAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--   75 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~--   75 (227)
                      ++++++..++.++..+|++..+|..++.++    ...   +++++++.++.+++..+|.+..+|..++.+....|.++  
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~  163 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA  163 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence            899999999999999999999999999999    777   78999999999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH-H
Q 027158           76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQM------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL-A  148 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~-A  148 (227)
                      +++.++.++++.+|.+..+|...+.+....+.      ++++++++.+++..+|.+..+|..++.++...|+   ... .
T Consensus       164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~  240 (306)
T 3dra_A          164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQL  240 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGG
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHH
Confidence            99999999999999999999999999999987      9999999999999999999999999999999997   544 5


Q ss_pred             HHHHHHHhhhc---CCCchhHHHhHHHHHHHH
Q 027158          149 KKYYASTIDLT---GGKNTKALFGICLCSSAI  177 (227)
Q Consensus       149 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~  177 (227)
                      ...+.++++++   | ....++..++.++...
T Consensus       241 ~~~~~~~~~~~~~~~-~s~~al~~la~~~~~~  271 (306)
T 3dra_A          241 EEFSLQFVDLEKDQV-TSSFALETLAKIYTQQ  271 (306)
T ss_dssp             HHHHHTTEEGGGTEE-SCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCC-CCHHHHHHHHHHHHcc
Confidence            55777777776   5 3778888888887743

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=1.1e-16  Score=109.69  Aligned_cols=118  Identities=21%  Similarity=0.140  Sum_probs=99.2

Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHH
Q 027158           20 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR   96 (227)
Q Consensus        20 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   96 (227)
                      .|.+...++.+|..+...|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|.++.+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            45677788888888888888888888888888888877   788888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           97 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        97 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      .+|.++...|++++|+.+|++++..+|++..++..++.+..
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            88888888888888888888888888888888877776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.75  E-value=1.7e-17  Score=116.20  Aligned_cols=119  Identities=17%  Similarity=0.047  Sum_probs=108.9

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLED------------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY   84 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   84 (227)
                      ....+...|..++..|++++|+..|.+++..                  +|.+..++.++|.++...|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3567788999999999999999999999998                  6777799999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCC
Q 027158           85 LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-LYHLAYADVLYTLGG  141 (227)
Q Consensus        85 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~  141 (227)
                      +.++|.++.+|+.+|.++...|++++|+..|++++.++|+++ .+...++.+....++
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 667777776655443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=2.1e-17  Score=126.19  Aligned_cols=145  Identities=13%  Similarity=-0.001  Sum_probs=103.6

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158           21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  100 (227)
Q Consensus        21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  100 (227)
                      |.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45566777778888888888888888888888888778888888888888888888888888888888888888888888


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCH-------------------------------HHHHHHHHHHHHcCCCCcHHHHH
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPTVP-------------------------------LYHLAYADVLYTLGGVDNILLAK  149 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~~~-------------------------------~~~~~la~~~~~~g~~~~~~~A~  149 (227)
                      ++...|++++|+..|++++.++|+++                               .+...++..  ..|+   +++|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~---~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAE---REREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHH---HHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHH---HHHHH
Confidence            88888888888888888877776542                               222222222  2455   77888


Q ss_pred             HHHHHHhhhcCCCchhHHHhHH
Q 027158          150 KYYASTIDLTGGKNTKALFGIC  171 (227)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~  171 (227)
                      ..|+++++.+|+ +......+.
T Consensus       156 ~~~~~al~~~p~-~~~~~~~l~  176 (281)
T 2c2l_A          156 EECQRNHEGHED-DGHIRAQQA  176 (281)
T ss_dssp             TTTSGGGTTTSC-HHHHTHHHH
T ss_pred             HHHHhhhccccc-hhhhhhHHH
Confidence            888888887775 544444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.75  E-value=8e-18  Score=129.98  Aligned_cols=178  Identities=15%  Similarity=0.094  Sum_probs=146.3

Q ss_pred             CCCChHHHHHHHHHHHHh------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAK   69 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~   69 (227)
                      ..|++++|+..+++++..      .|....++..+|.++...|++++|+..+++++...|..      ..++..+|.++.
T Consensus        55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  134 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            368999999999998876      33456788899999999999999999999999875533      348889999999


Q ss_pred             HcCC--------------------hHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           70 AQGN--------------------FPTAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        70 ~~~~--------------------~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      ..|+                    +++|+..+++++...      |....++..+|.++...|++++|+.++++++...|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            9999                    999999999998763      33456899999999999999999999999998765


Q ss_pred             CC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC-----chhHHHhHHHHHHHHHhhhc
Q 027158          124 TV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK-----NTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       124 ~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~  182 (227)
                      ..      ..++..+|.++...|+   +++|...++++++..+..     ....+..++.++...++..+
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  281 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK  281 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence            32      2388999999999999   999999999999886641     15566777777777666543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.74  E-value=2e-17  Score=127.79  Aligned_cols=154  Identities=13%  Similarity=0.067  Sum_probs=135.0

Q ss_pred             CCChHHHHHHHHHHHHhCCC------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--D----PVLHKRRVAIAKA   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~l~~~~~~   70 (227)
                      .|++++|+..|.+++...+.      ...++..+|.++...|++++|+.+|++++.+.+.  +    ..++..+|.++..
T Consensus        49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  128 (307)
T 2ifu_A           49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP  128 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence            58899999999999988652      2457888999999999999999999999998432  2    4678899999998


Q ss_pred             cCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 027158           71 QGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYT  138 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~  138 (227)
                       |++++|+.+|++++++.|..      ..++.++|.++...|++++|+.+|++++.+.|.+      ..++..+|.++..
T Consensus       129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~  207 (307)
T 2ifu_A          129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH  207 (307)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence             99999999999999998754      5789999999999999999999999999886643      3478889999999


Q ss_pred             cCCCCcHHHHHHHHHHHhhhcCC
Q 027158          139 LGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       139 ~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +|+   +++|+.+|++++ +.|.
T Consensus       208 ~g~---~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          208 RAD---YVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             TTC---HHHHHHHHHHHT-TSTT
T ss_pred             cCC---HHHHHHHHHHHh-CCCC
Confidence            999   999999999999 9886

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.74  E-value=3.7e-16  Score=103.62  Aligned_cols=119  Identities=21%  Similarity=0.279  Sum_probs=109.8

Q ss_pred             CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 027158           54 NPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  132 (227)
Q Consensus        54 ~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  132 (227)
                      +|.. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            5555 688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          133 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      |.++...|+   +++|...|+++++.+|+ +...+..++.++..
T Consensus        84 a~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~  123 (125)
T 1na0_A           84 GNAYYKQGD---YDEAIEYYQKALELDPN-NAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence            999999999   99999999999999995 88888888777654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.74  E-value=4.9e-17  Score=108.51  Aligned_cols=99  Identities=12%  Similarity=-0.058  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  139 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  139 (227)
                      .++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHhhhcCC
Q 027158          140 GGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       140 g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      |+   +++|+..|+++++++|+
T Consensus        99 g~---~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           99 HN---ANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HH---HHHHHHHHHHHHC----
T ss_pred             CC---HHHHHHHHHHHHHhCcC
Confidence            99   99999999999999995

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.74  E-value=3.6e-18  Score=139.01  Aligned_cols=142  Identities=13%  Similarity=0.184  Sum_probs=129.4

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---------------HHHHHHHHH
Q 027158           36 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAE  100 (227)
Q Consensus        36 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~  100 (227)
                      ..+++++|+..|+.++...|....++..+|.+++..|++++|+..|++++.++|.+               ..+|.++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34567788888888888889999999999999999999999999999999999998               689999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158          101 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  180 (227)
Q Consensus       101 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (227)
                      ++...|+|++|+.+|++++.++|+++.+++++|.++..+|+   +++|+..|+++++++|+ +..++..++.++..+++.
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999   99999999999999996 888999999999888874


Q ss_pred             h
Q 027158          181 T  181 (227)
Q Consensus       181 ~  181 (227)
                      .
T Consensus       402 ~  402 (457)
T 1kt0_A          402 N  402 (457)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.74  E-value=7.5e-17  Score=127.96  Aligned_cols=157  Identities=12%  Similarity=-0.040  Sum_probs=138.8

Q ss_pred             CCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DPVLHKRRVAIA   68 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~l~~~~   68 (227)
                      ..|++++|+..+++++...+      ....++..+|.++...|+++.|+.++.+++...+.       ...++..+|.++
T Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y  192 (378)
T 3q15_A          113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY  192 (378)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            36899999999999998743      24567899999999999999999999999987432       246788999999


Q ss_pred             HHcCChHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHH
Q 027158           69 KAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELIL-----SQPTVPLYHLAYADVLY  137 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~  137 (227)
                      ...|++++|+.+|++++++.+.      ...++.++|.+|...|++++|+.+|++++.     .+|..+.++..+|.++.
T Consensus       193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence            9999999999999999997542      245889999999999999999999999998     77888899999999999


Q ss_pred             HcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          138 TLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       138 ~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..|+   +++|+.++++++++.+.
T Consensus       273 ~~g~---~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          273 KAGQ---TQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HTTC---HHHHHHHHHHHHHHCCT
T ss_pred             HCCC---HHHHHHHHHHHHHHHHH
Confidence            9999   99999999999998654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.74  E-value=2.8e-16  Score=103.24  Aligned_cols=114  Identities=16%  Similarity=0.049  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158           57 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  136 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  136 (227)
                      .+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHH
Q 027158          137 YTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  174 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (227)
                      ...|+   +++|...|+++++.+|+ +...+..++.+.
T Consensus        83 ~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNR---FEEAKRTYEEGLKHEAN-NPQLKEGLQNME  116 (118)
T ss_dssp             HHTTC---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred             HHHhh---HHHHHHHHHHHHHcCCC-CHHHHHHHHHhh
Confidence            99999   99999999999999996 777777666553

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.74  E-value=2.7e-17  Score=113.32  Aligned_cols=107  Identities=13%  Similarity=0.021  Sum_probs=98.9

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHH----
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DPV-----LHKRRVAIAKAQGNFPTAIEWLNKYLET----   87 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~l~~----   87 (227)
                      ...+...|..++..|++++|+..|+++++.+|+       +..     +|.++|.++..+|++++|+..|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456788999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---cCCCHHHH----HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158           88 ---FMADHDAW----RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  130 (227)
Q Consensus        88 ---~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  130 (227)
                         +|+++.+|    +++|.++...|++++|+.+|+++++++|++.....
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence               99999999    99999999999999999999999999998754433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.74  E-value=3.3e-16  Score=109.37  Aligned_cols=120  Identities=15%  Similarity=0.001  Sum_probs=112.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|
T Consensus        25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  104 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDY  104 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHH--HHHHcccHHHHHHHHHHHHhh
Q 027158           82 NKYLETFMADHDAWRELAE--IYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~--~~~~~~~~~~A~~~~~~al~~  121 (227)
                      ++++..+|.+..++..++.  .+...|++++|+.+++++...
T Consensus       105 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          105 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999998855544  488899999999999987654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.73  E-value=3.2e-16  Score=105.14  Aligned_cols=116  Identities=13%  Similarity=0.005  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWREL   98 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l   98 (227)
                      ..++.+|.++...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3566778888888888888888888888888777   678888888888888888888888888888887   7778888


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           99 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        99 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      |.++...|++++|+..|++++...|+++.+......+....+
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            888888888888888888888888887776665555544433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.73  E-value=3.7e-18  Score=139.55  Aligned_cols=135  Identities=13%  Similarity=0.066  Sum_probs=117.9

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      ...+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|.++.++.++|.+|.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44566778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCCCcHHHHHHHHH-----------HHhhhcCC
Q 027158          104 SLQMYKQAAFCYEELILSQPTVPLYHLAYADV--LYTLGGVDNILLAKKYYA-----------STIDLTGG  161 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~~~~A~~~~~-----------~~~~~~~~  161 (227)
                      ..|++++|+.+|+++++.+|++..++..++.+  +...|+   +++|+..++           +++.+.|+
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhcccccc
Confidence            99999999999999999999999888888888  888888   999999999           88887775

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.72  E-value=8e-17  Score=104.96  Aligned_cols=104  Identities=18%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHH
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLA  131 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~  131 (227)
                      +|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++...|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555  5555555


Q ss_pred             HHHHHHHc-CCCCcHHHHHHHHHHHhhhcC
Q 027158          132 YADVLYTL-GGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       132 la~~~~~~-g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      +|.++... |+   +++|+.++++++...|
T Consensus        82 l~~~~~~~~~~---~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           82 KADALRYIEGK---EVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHTTCSSC---SHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhCC---HHHHHHHHHHHhhccc
Confidence            55555555 55   5555555555555555

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.72  E-value=8.3e-17  Score=122.90  Aligned_cols=153  Identities=8%  Similarity=-0.122  Sum_probs=134.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   95 (281)
T 2c2l_A           16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL   95 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCH-----HHHH--------------------------HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158           82 NKYLETFMADH-----DAWR--------------------------ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  130 (227)
Q Consensus        82 ~~~l~~~p~~~-----~~~~--------------------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  130 (227)
                      +++++++|+++     .++.                          .++.+  ..|++++|+..+++++..+|.+.....
T Consensus        96 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~  173 (281)
T 2c2l_A           96 QRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRA  173 (281)
T ss_dssp             HHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTH
T ss_pred             HHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhh
Confidence            99999998652     1221                          22222  368999999999999999999988888


Q ss_pred             HHHHHHHHc-CCCCcHHHHHHHHHHHhhhc
Q 027158          131 AYADVLYTL-GGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       131 ~la~~~~~~-g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .++.++... +.   +++|...|.++.+..
T Consensus       174 ~l~~~~~~~~~~---~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          174 QQACIEAKHDKY---MADMDELFSQVDEKR  200 (281)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHSSCTT
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHhhhccc
Confidence            888777766 66   889999999888743

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=3.9e-16  Score=114.30  Aligned_cols=152  Identities=12%  Similarity=-0.099  Sum_probs=135.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCh
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNF   74 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~   74 (227)
                      .+++++|+..|+++.+.  .++.+++.+|.++.. +    ++++|+.+|+++.+  +.++.+++.+|.++..    .+++
T Consensus        31 ~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~  105 (212)
T 3rjv_A           31 SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDV  105 (212)
T ss_dssp             HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCH
Confidence            47899999999999875  578999999999998 7    99999999999964  6789999999999998    8999


Q ss_pred             HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C--CCCcH
Q 027158           75 PTAIEWLNKYLETFMA--DHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-G--GVDNI  145 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g--~~~~~  145 (227)
                      ++|+.+|+++++..|.  ++.+++.||.+|..    .+++++|+.+|+++... |.++.+++++|.+|... |  -..++
T Consensus       106 ~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~  184 (212)
T 3rjv_A          106 AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNK  184 (212)
T ss_dssp             HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCH
T ss_pred             HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCH
Confidence            9999999999998873  59999999999999    88999999999999998 77788999999999865 3  12239


Q ss_pred             HHHHHHHHHHhhhcC
Q 027158          146 LLAKKYYASTIDLTG  160 (227)
Q Consensus       146 ~~A~~~~~~~~~~~~  160 (227)
                      ++|+.+|+++.+..+
T Consensus       185 ~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          185 QKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999999865

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.71  E-value=3.4e-16  Score=104.76  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------HHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRE   97 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~   97 (227)
                      ..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.+       +.++..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            4445555555555555555555555555555555555555555555555555555555555555544       555555


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      +|.++...|++++|+.+|++++...| ++..+..++.+..
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            55555555555555555555555555 3444444444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.71  E-value=1.5e-16  Score=103.58  Aligned_cols=107  Identities=13%  Similarity=0.164  Sum_probs=103.6

Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CHHHHHH
Q 027158           20 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRE   97 (227)
Q Consensus        20 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~   97 (227)
                      +|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.  ++.++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-ccHHHHHHHHHHHHhhCCCCH
Q 027158           98 LAEIYVSL-QMYKQAAFCYEELILSQPTVP  126 (227)
Q Consensus        98 la~~~~~~-~~~~~A~~~~~~al~~~p~~~  126 (227)
                      +|.++... |++++|+.++++++...|.++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.71  E-value=1.2e-16  Score=126.83  Aligned_cols=153  Identities=10%  Similarity=0.044  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------H
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLED---NPL---DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------H   92 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~   92 (227)
                      .++.+|.++...|++++|+..|++++..   .++   .+.++..+|.++...|++++|+.++++++++.+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3455899999999999999999999987   233   45889999999999999999999999999986544       4


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh-----c-C
Q 027158           93 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP------LYHLAYADVLYTLGGVDNILLAKKYYASTIDL-----T-G  160 (227)
Q Consensus        93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~-----~-~  160 (227)
                      .++..+|.+|...|++++|+.+|++++...|...      .++.++|.++...|+   +++|+.+|++++++     + |
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ---YEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhhccch
Confidence            5899999999999999999999999998765332      489999999999999   99999999999994     4 5


Q ss_pred             CCchhHHHhHHHHHHHHHhhhc
Q 027158          161 GKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      . ...++..++.++..+++..+
T Consensus       262 ~-~~~~~~~l~~~~~~~g~~~~  282 (383)
T 3ulq_A          262 S-LPQAYFLITQIHYKLGKIDK  282 (383)
T ss_dssp             G-HHHHHHHHHHHHHHTTCHHH
T ss_pred             h-HHHHHHHHHHHHHHCCCHHH
Confidence            3 67888899999988877554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.70  E-value=1.5e-17  Score=130.32  Aligned_cols=137  Identities=13%  Similarity=-0.009  Sum_probs=92.9

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----------------VLHKRRVAIAKAQGNFPTAIEWLNKY   84 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~~   84 (227)
                      .....+..+|..++..|++++|+..|++++...|.+.                 .++.++|.++...|++++|+..|+++
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456788999999999999999999999999999876                 48999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           85 LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY-TLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        85 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++++|+++.+|+++|.+|...|++++|+.+|++++.++|++..++..++.+.. ..+.   .+.+...|.+++...|.
T Consensus       257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCC
Confidence            99999999999999999999999999999999999999999999999998844 4455   78889999999999885

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.2e-15  Score=104.55  Aligned_cols=118  Identities=13%  Similarity=-0.035  Sum_probs=108.8

Q ss_pred             hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           52 EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        52 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      ...|.+...+..+|..+...|++++|+..|++++..+|++   ..++..+|.++...|++++|+.++++++..+|+++.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3467889999999999999999999999999999999988   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHH
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC  173 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  173 (227)
                      ++.+|.++...|+   +++|+..|+++++++|+ +...+..+..+
T Consensus       102 ~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~  142 (148)
T 2dba_A          102 LYRRSQALEKLGR---LDQAVLDLQRCVSLEPK-NKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHHHTC---HHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence            9999999999999   99999999999999996 76665554433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.70  E-value=2e-16  Score=108.79  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=75.6

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158           36 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF----------PTAIEWLNKYLETFMADHDAWRELAEIYVSL  105 (227)
Q Consensus        36 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  105 (227)
                      +.+.+++|+..++++++.+|+++.+|+++|.++...+++          ++|+..|+++++++|+++.+|+++|.+|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            446678888888888888888888888888888877664          4888888888888888888888888888877


Q ss_pred             c-----------cHHHHHHHHHHHHhhCCCCHHHHHH
Q 027158          106 Q-----------MYKQAAFCYEELILSQPTVPLYHLA  131 (227)
Q Consensus       106 ~-----------~~~~A~~~~~~al~~~p~~~~~~~~  131 (227)
                      |           ++++|+.+|++|+.++|++..++..
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a  130 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  130 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4           7888888888888888877544333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.70  E-value=9e-16  Score=102.66  Aligned_cols=119  Identities=13%  Similarity=0.043  Sum_probs=108.6

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-------HHH
Q 027158           56 LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLY  128 (227)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~  128 (227)
                      ..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999999998877       889


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +..+|.++...|+   +++|+..|+++++..|  +......+..+...+.+
T Consensus        82 ~~~la~~~~~~~~---~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           82 YARIGNSYFKEEK---YKDAIHFYNKSLAEHR--TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHH
Confidence            9999999999999   9999999999999988  46667777777766654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.68  E-value=2.2e-15  Score=101.00  Aligned_cols=105  Identities=18%  Similarity=0.129  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYA  133 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la  133 (227)
                      +++.+|.++...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+.+|++++..+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            467899999999999999999999999999998   899999999999999999999999999999999   88999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHH
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  168 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~  168 (227)
                      .++...|+   +++|+..|+++++..|+ ...+..
T Consensus        84 ~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~  114 (129)
T 2xev_A           84 LSQYGEGK---NTEAQQTLQQVATQYPG-SDAARV  114 (129)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHSTT-SHHHHH
T ss_pred             HHHHHcCC---HHHHHHHHHHHHHHCCC-ChHHHH
Confidence            99999999   99999999999999996 554433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.68  E-value=2e-16  Score=129.34  Aligned_cols=124  Identities=15%  Similarity=0.025  Sum_probs=113.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|
T Consensus        18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~   97 (477)
T 1wao_1           18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDY   97 (477)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHH--HHHcccHHHHHHHHH-----------HHHhhCCCC
Q 027158           82 NKYLETFMADHDAWRELAEI--YVSLQMYKQAAFCYE-----------ELILSQPTV  125 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~al~~~p~~  125 (227)
                      +++++++|+++.++..++.+  +...|++++|+..++           +++...|..
T Consensus        98 ~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           98 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999999998  889999999999999           887777653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.68  E-value=3.2e-14  Score=108.99  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=128.8

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-----
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----   91 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-----   91 (227)
                      ....+...+..+...|++++|+..+.++++..|...      ..+..+|.++...|++++|+..+++++...+..     
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            344556678888999999999999999999887654      335678888999999999999999999876544     


Q ss_pred             -HHHHHHHHHHHHHcccHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC--
Q 027158           92 -HDAWRELAEIYVSLQMYKQAAFCYEELI---LSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG--  161 (227)
Q Consensus        92 -~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~--  161 (227)
                       ..++..+|.+|...|++++|+.+|++++   ...|.+.    .++.++|.++..+|+   +++|+.+|++++++.+.  
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHHhcC
Confidence             5689999999999999999999999999   5566643    589999999999999   99999999999988652  


Q ss_pred             ---CchhHHHhHHHHHHHHHh
Q 027158          162 ---KNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       162 ---~~~~~~~~l~~~~~~~~~  179 (227)
                         ....+++.++.++..+++
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~  251 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHcCC
Confidence               115667788888887775

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.67  E-value=7.6e-16  Score=121.97  Aligned_cols=117  Identities=16%  Similarity=0.066  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLE----------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF   88 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~   88 (227)
                      ..+..+|..+...|++++|+..|+++++                .+|.+..++.++|.++...|++++|+.+++++++++
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            4467778888888888888888888887                455555666666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           89 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        89 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      |+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666665555

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.67  E-value=1.7e-16  Score=105.08  Aligned_cols=95  Identities=15%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             cCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHH
Q 027158           37 KGLWAEAEKAYSSLLED---NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  113 (227)
Q Consensus        37 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~  113 (227)
                      .|++++|+..|+++++.   +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            46666777777777776   466667777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhCCCCHHHHHH
Q 027158          114 CYEELILSQPTVPLYHLA  131 (227)
Q Consensus       114 ~~~~al~~~p~~~~~~~~  131 (227)
                      ++++++...|+++.....
T Consensus        83 ~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHHHHHHCCCHHHHHT
T ss_pred             HHHHHHHhCCCcHHHHHH
Confidence            777777777776655433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=2.6e-16  Score=118.71  Aligned_cols=174  Identities=10%  Similarity=-0.097  Sum_probs=141.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLE-------GILLEAKGLWAEAEKAYSSLLEDNPLDP-----------------   58 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------   58 (227)
                      .+++..|...|.++...+|+.+.+|..+       +.++...++..+++..+++.+.+.|...                 
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            5789999999999999999999999999       7888888888888888888888766543                 


Q ss_pred             ----HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHH
Q 027158           59 ----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAY  132 (227)
Q Consensus        59 ----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l  132 (227)
                          .+...++.++...|++++|.+.|...+...|.+. ..+.+|.+++..++|++|+.+|+.+....+..  ..+++.+
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence                3445577888889999999999988888888877 88888889999999999999988776543221  3478888


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhhhc--CCCchhHHHhHHHHHHHHHhh
Q 027158          133 ADVLYTLGGVDNILLAKKYYASTIDLT--GGKNTKALFGICLCSSAIAQL  180 (227)
Q Consensus       133 a~~~~~~g~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~  180 (227)
                      |.++..+|+   +++|+..|++++...  |.....+++.+++|...+++.
T Consensus       178 G~al~~LG~---~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~  224 (282)
T 4f3v_A          178 GVAAANLAL---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE  224 (282)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHCCC---HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence            999999998   999999999888543  422455778888888888863

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.65  E-value=1e-15  Score=105.30  Aligned_cols=98  Identities=15%  Similarity=0.169  Sum_probs=88.1

Q ss_pred             HcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 027158           70 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY----------KQAAFCYEELILSQPTVPLYHLAYADVLYTL  139 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  139 (227)
                      +.+.+++|+..++++++++|+++.+|+++|.++...+++          ++|+..|+++++++|++..+++++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            456689999999999999999999999999999999875          5999999999999999999999999999988


Q ss_pred             C-----------CCCcHHHHHHHHHHHhhhcCCCchhHHHhHH
Q 027158          140 G-----------GVDNILLAKKYYASTIDLTGGKNTKALFGIC  171 (227)
Q Consensus       140 g-----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  171 (227)
                      |           +   +++|+.+|+++++++|+ +......+.
T Consensus        94 g~l~P~~~~a~g~---~~eA~~~~~kAl~l~P~-~~~y~~al~  132 (158)
T 1zu2_A           94 AFLTPDETEAKHN---FDLATQFFQQAVDEQPD-NTHYLKSLE  132 (158)
T ss_dssp             HHHCCCHHHHHHH---HHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             cccCcchhhhhcc---HHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            5           7   99999999999999996 654444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.65  E-value=2.3e-15  Score=119.39  Aligned_cols=153  Identities=14%  Similarity=0.110  Sum_probs=132.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------H
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNP------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------H   92 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~   92 (227)
                      .++.+|..+...|++++|+..|++++...+      ..+.++..+|.++...|+++.|+.++++++++.+..       +
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            567789999999999999999999998732      245789999999999999999999999999986642       4


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh-----hcCC
Q 027158           93 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYTLGGVDNILLAKKYYASTID-----LTGG  161 (227)
Q Consensus        93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~-----~~~~  161 (227)
                      .++..+|.++...|++++|+.+|++++.+.+.      ...++.++|.++...|+   +++|+.+|+++++     .+|.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD---DQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhhCChh
Confidence            57889999999999999999999999986431      24578999999999999   9999999999999     6775


Q ss_pred             CchhHHHhHHHHHHHHHhhhc
Q 027158          162 KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~~~~  182 (227)
                       ...+++.++.++...++..+
T Consensus       260 -~~~~~~~la~~~~~~g~~~~  279 (378)
T 3q15_A          260 -LPKVLFGLSWTLCKAGQTQK  279 (378)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHH
T ss_pred             -HHHHHHHHHHHHHHCCCHHH
Confidence             58888999999988877554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.64  E-value=5.8e-15  Score=119.98  Aligned_cols=160  Identities=11%  Similarity=-0.045  Sum_probs=134.0

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCChHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-A--KAQGNFPTA   77 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~--~~~~~~~~A   77 (227)
                      ++++|+..|+++....|.....++.+|.++...    +++++|+.+|+++.   |+++.+++.+|.+ +  ...+++++|
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A  270 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM  270 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence            788999999999999988888888999998766    79999999999988   8899999999998 4  468899999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Q 027158           78 IEWLNKYLETFMADHDAWRELAEIYVSLQ-----MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDNILLAKKY  151 (227)
Q Consensus        78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~~A~~~  151 (227)
                      +.+|+++.+  +.++.+++.+|.+|. .|     ++++|+.+|+++.   |.++.+++++|.+|..- |-..++++|+.+
T Consensus       271 ~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~  344 (452)
T 3e4b_A          271 MKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDH  344 (452)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred             HHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence            999999875  458999999999998 55     9999999999998   88999999999888762 112239999999


Q ss_pred             HHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          152 YASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      |+++.+..   ++.+.+.++.++..
T Consensus       345 ~~~Aa~~g---~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          345 LLTAARNG---QNSADFAIAQLFSQ  366 (452)
T ss_dssp             HHHHHTTT---CTTHHHHHHHHHHS
T ss_pred             HHHHHhhC---hHHHHHHHHHHHHh
Confidence            99998853   55677777777653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.63  E-value=5.6e-16  Score=102.60  Aligned_cols=97  Identities=12%  Similarity=-0.001  Sum_probs=87.5

Q ss_pred             CCCChHHHHHHHHHHHHh---CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQ---FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI   78 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~   78 (227)
                      ..|++++|+..|++++..   +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   58889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHH
Q 027158           79 EWLNKYLETFMADHDAWREL   98 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~l   98 (227)
                      ..|++++...|+++......
T Consensus        82 ~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHHhCCCcHHHHHHH
Confidence            99999999999998865433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.63  E-value=5.4e-14  Score=115.23  Aligned_cols=159  Identities=16%  Similarity=0.045  Sum_probs=90.6

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCh
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-----GNF   74 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----~~~   74 (227)
                      +++++|+..|+++...  .++.+.+.+|.++..    .+++++|+.+|+++.+.  .++.++..+|.++...     +++
T Consensus       237 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~  312 (490)
T 2xm6_A          237 QDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNR  312 (490)
T ss_dssp             CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCH
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCH
Confidence            4555555555555543  334555555666555    56666666666665543  3455566666666655     566


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHH
Q 027158           75 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILL  147 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~~  147 (227)
                      ++|+.+|+++++.  .++.+++.+|.+|...|   ++++|+.+|++++..  .++.+++.+|.++..    .++   +++
T Consensus       313 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~---~~~  385 (490)
T 2xm6_A          313 EQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD---EQQ  385 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHH
T ss_pred             HHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHH
Confidence            6666666666543  34556666666665543   566666666666654  455666666666665    455   666


Q ss_pred             HHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          148 AKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       148 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      |+.+|+++++..   ++.+++.++.++..
T Consensus       386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          386 AAIWMRKAAEQG---LSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence            666666666542   34455555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=3.3e-16  Score=130.30  Aligned_cols=153  Identities=9%  Similarity=0.071  Sum_probs=142.3

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEWLN   82 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~   82 (227)
                      +++++..+++++..+|++..+|..++.++...+  ++++++..+.++++.+|.+..+|..++.+....| .++++++++.
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            899999999999999999999999999999999  7799999999999999999999999999999999 8999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH-
Q 027158           83 KYLETFMADHDAWRELAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL-  147 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~-  147 (227)
                      ++++.+|.+..+|..++.++...              +.++++++++.+++..+|++..+|+.++.++...+.   +.+ 
T Consensus       169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~---~~~~  245 (567)
T 1dce_A          169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP---HDVL  245 (567)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC---CSCE
T ss_pred             HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC---ccce
Confidence            99999999999999999999885              779999999999999999999999999999998887   554 


Q ss_pred             -----------HHHHHHHHhhhcCC
Q 027158          148 -----------AKKYYASTIDLTGG  161 (227)
Q Consensus       148 -----------A~~~~~~~~~~~~~  161 (227)
                                 |+..|.+++.++|.
T Consensus       246 ~~~~~~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          246 CCVHVSREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             EEEEEETTTTEEEEEEEEEECTTBT
T ss_pred             eeeeeccCCceEEEEeccceecccc
Confidence                       55567777777664

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.63  E-value=5.9e-15  Score=102.11  Aligned_cols=134  Identities=16%  Similarity=0.018  Sum_probs=117.5

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------   91 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------   91 (227)
                      ..++..+|.++...|++++|+..+++++...+...      .++..+|.++...|++++|+.++++++...+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            45788999999999999999999999999754322      578899999999999999999999999987653      


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158           92 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus        92 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ..++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|+   +++|..++++++++..
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999976432      24578999999999999   9999999999998765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.62  E-value=2.5e-14  Score=112.91  Aligned_cols=156  Identities=15%  Similarity=0.021  Sum_probs=134.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchh-----hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKR-----VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKA   70 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~   70 (227)
                      ..|++++|...+++++...|....     ++..+|.++...|++++|...+++++...|...      .++..+|.++..
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  105 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  105 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            368999999999999998875432     577889999999999999999999998755332      346789999999


Q ss_pred             cCChHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 027158           71 QGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-----PLYHLAYADVLY  137 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~  137 (227)
                      .|++++|+..+++++...        |....++..+|.++...|++++|..++++++...|..     ..++..+|.++.
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  185 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  185 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence            999999999999999876        3345678889999999999999999999999887752     467889999999


Q ss_pred             HcCCCCcHHHHHHHHHHHhhhcC
Q 027158          138 TLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       138 ~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ..|+   +++|...+++++.+.+
T Consensus       186 ~~g~---~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          186 ARGD---LDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHTC---HHHHHHHHHHHHHHHT
T ss_pred             HcCC---HHHHHHHHHHHHHHHh
Confidence            9999   9999999999998754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.62  E-value=1.7e-14  Score=114.17  Aligned_cols=120  Identities=11%  Similarity=-0.056  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLE----------------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                      ...+..+|..+...|++++|+..|+++++                .+|.+..+|.++|.++...|++++|+.++++++..
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999999                77888899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          122 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       122 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      +|+++.+++.+|.++..+|+   +++|+..|+++++++|+ +..++..+..+...+++..
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999   99999999999999996 8888888888888777643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.61  E-value=1.1e-15  Score=119.78  Aligned_cols=127  Identities=14%  Similarity=0.068  Sum_probs=82.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCch-----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESK-----------------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR   63 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~   63 (227)
                      +..|++++|+..|++++...|++.                 .++..+|.++...|++++|+..|++++..+|++..+++.
T Consensus       190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  269 (338)
T 2if4_A          190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFR  269 (338)
T ss_dssp             CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            357899999999999999999876                 488999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHcccHHHHHHHHHHHHhhCCCCHH
Q 027158           64 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY-VSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus        64 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      +|.++...|++++|+..|+++++++|+++.++..++.+. ...+..+.+...|.+++...|.++.
T Consensus       270 lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          270 RGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            999999999999999999999999999999999999994 4567788999999999999997754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.61  E-value=5.4e-13  Score=109.32  Aligned_cols=159  Identities=10%  Similarity=0.049  Sum_probs=112.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCh
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNF   74 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~   74 (227)
                      .+++++|+..|+++.+.  .++.+++.+|.++..    .+++++|+.+|+++.+.  .++.++..+|.++..    .+++
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            46777788877777765  466777777877777    77788888888777764  467777777777777    6777


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHH
Q 027158           75 PTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNIL  146 (227)
Q Consensus        75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~  146 (227)
                      ++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++...  .++.++..+|.+|..    .++   ++
T Consensus       132 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~---~~  204 (490)
T 2xm6_A          132 AESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERN---DA  204 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcC---HH
Confidence            7777777777653  567777777777776    67777777777777764  467777777777776    566   77


Q ss_pred             HHHHHHHHHhhhcCCCchhHHHhHHHHHH
Q 027158          147 LAKKYYASTIDLTGGKNTKALFGICLCSS  175 (227)
Q Consensus       147 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (227)
                      +|+.+|+++.+..   ++.+++.++.++.
T Consensus       205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~  230 (490)
T 2xm6_A          205 ISAQWYRKSATSG---DELGQLHLADMYY  230 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence            7777777776643   3445555555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.59  E-value=4.2e-14  Score=108.37  Aligned_cols=148  Identities=14%  Similarity=0.064  Sum_probs=121.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHH
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPV------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWR   96 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~   96 (227)
                      ..+..+...|++++|...+++++...+..+.      .+..+|.++...|++++|+.+|++++...+..      ..++.
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3467788899999999999999998877665      23358888888999999999999999975543      34799


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC-----ch
Q 027158           97 ELAEIYVSLQMYKQAAFCYEELILSQ-------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK-----NT  164 (227)
Q Consensus        97 ~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~-----~~  164 (227)
                      .+|.+|...|++++|+.+|++++...       +....++.++|.++..+|+   +++|+.++++++++.+..     ..
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            99999999999999999999999521       2224588999999999999   999999999999987541     15


Q ss_pred             hHHHhHHHHHHHHHh
Q 027158          165 KALFGICLCSSAIAQ  179 (227)
Q Consensus       165 ~~~~~l~~~~~~~~~  179 (227)
                      .+++.++.++..+++
T Consensus       237 ~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          237 QLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            677778888777663

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.58  E-value=1.2e-13  Score=112.18  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=133.6

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CChHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ----GNFPTAI   78 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----~~~~~A~   78 (227)
                      .+++..+++.+...   ++.+++.+|.++...|   ++++|+.+|+++....|.....++.+|.+|...    +++++|+
T Consensus       161 ~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          161 LDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             HHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            34444455544443   4459999999999999   999999999999999999999989999999765    7999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHH-H--HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHH
Q 027158           79 EWLNKYLETFMADHDAWRELAEI-Y--VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG--VDNILLAKKYYA  153 (227)
Q Consensus        79 ~~~~~~l~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~~~~A~~~~~  153 (227)
                      .+|+++.   |.++.+++++|.+ +  ...+++++|+.+|+++...  .++.+++++|.+|. .|.  ..++++|+.+|+
T Consensus       238 ~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~  311 (452)
T 3e4b_A          238 ALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFE  311 (452)
T ss_dssp             HHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence            9999998   8999999999999 4  4689999999999999865  48999999999998 550  112999999999


Q ss_pred             HHhhhcCCCchhHHHhHHHHHHH
Q 027158          154 STIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      ++.   ++ ++.+++.++.++..
T Consensus       312 ~Aa---~g-~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          312 KAV---GR-EVAADYYLGQIYRR  330 (452)
T ss_dssp             TTT---TT-CHHHHHHHHHHHHT
T ss_pred             HHh---CC-CHHHHHHHHHHHHC
Confidence            999   64 88899999888765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.57  E-value=9e-14  Score=106.19  Aligned_cols=164  Identities=15%  Similarity=0.050  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158            9 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus         9 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      |+..+++.+...+.+...+..+|.++...|++++|+..+.+.+..+|  ++..++...+.++...|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            45667777766656677778999999999999999999999999987  7889999999999999999999999999999


Q ss_pred             HcCC----CHHHHHHH--HHHHHHcc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158           87 TFMA----DHDAWREL--AEIYVSLQ--MYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus        87 ~~p~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      .+|+    +......+  |.+.+..|  ++.+|...|+++....|+  .+..+++   ++..+|+   +++|...++.++
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~---~~eAe~~L~~l~  238 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN---IAEAQGIVELLL  238 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC---HHHHHHHHHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC---HHHHHHHHHHHH
Confidence            9983    23344444  44466666  999999999999888886  3334444   8999999   999999999888


Q ss_pred             hh----------cCCCchhHHHhHHHHHHHHHh
Q 027158          157 DL----------TGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       157 ~~----------~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +.          +|+ ++.++.+++.+...+++
T Consensus       239 ~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          239 SDYYSVEQKENAVLY-KPTFLANQITLALMQGL  270 (310)
T ss_dssp             SHHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC
T ss_pred             HhcccccccccCCCC-CHHHHHHHHHHHHHhCh
Confidence            76          474 88898898888887763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.57  E-value=3e-15  Score=112.95  Aligned_cols=132  Identities=11%  Similarity=-0.079  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-D-HDAWRELAEIYV  103 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~-~-~~~~~~la~~~~  103 (227)
                      +...++.++...|++++|.+.|..++...|++. +.+.+|.++...+++++|+..|+.+....+. . ..+++.+|.++.
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence            344578899999999999999999999999888 9999999999999999999999977654211 1 358999999999


Q ss_pred             HcccHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          104 SLQMYKQAAFCYEELILSQ--PT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..|++++|+.+|++++...  |. .+.+++.+|.++..+|+   .++|...|++++..+|+
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc
Confidence            9999999999999998654  55 56799999999999999   99999999999999994

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.56  E-value=6.1e-14  Score=92.25  Aligned_cols=100  Identities=13%  Similarity=0.071  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      .|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|+   +++|+..|+++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD---RAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence            466677777777777777777777777777777777777777777777777777777777777777   77777777777


Q ss_pred             hhhcCC-CchhHHHhHHHHHHHHH
Q 027158          156 IDLTGG-KNTKALFGICLCSSAIA  178 (227)
Q Consensus       156 ~~~~~~-~~~~~~~~l~~~~~~~~  178 (227)
                      +++.|. .+......+......++
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHHhc
Confidence            777664 23333334444444433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.56  E-value=2.6e-13  Score=105.50  Aligned_cols=137  Identities=13%  Similarity=-0.005  Sum_probs=131.0

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH-------
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-G-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-------   75 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~-------   75 (227)
                      .+++++..++.++..+|++..+|..++.++... + ++++++.++.+++..+|.+..+|..++.+....|.++       
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~  183 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW  183 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence            589999999999999999999999999999998 8 8999999999999999999999999999999988888       


Q ss_pred             -HHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           76 -TAIEWLNKYLETFMADHDAWRELAEIYVSLQM-------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        76 -~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                       ++++++.++++.+|.+..+|...+.++...+.       ++++++++.+++..+|++..+|..+..++...|.
T Consensus       184 ~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence             99999999999999999999999999999886       8999999999999999999999999999888876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.54  E-value=1.7e-13  Score=90.05  Aligned_cols=96  Identities=13%  Similarity=0.041  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           42 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        42 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                      .|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46777788888888888888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             CCC--CHHHHHHHHHHHH
Q 027158          122 QPT--VPLYHLAYADVLY  137 (227)
Q Consensus       122 ~p~--~~~~~~~la~~~~  137 (227)
                      .|.  +......+...+.
T Consensus        83 ~~~~~~~~~~~~l~~~l~  100 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLR  100 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            663  3333344443333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.53  E-value=2.3e-13  Score=85.27  Aligned_cols=84  Identities=20%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158           57 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  136 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  136 (227)
                      ++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHcC
Q 027158          137 YTLG  140 (227)
Q Consensus       137 ~~~g  140 (227)
                      ...|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            5543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.51  E-value=1e-12  Score=94.57  Aligned_cols=142  Identities=15%  Similarity=0.084  Sum_probs=111.7

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcccH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMY  108 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~  108 (227)
                      +..|++++|...++.+....+....++..+|.++...|++++|+..+++++.+      .|....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            56799999999665555533467799999999999999999999999999994      344567899999999999999


Q ss_pred             HHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-Cc----hhHHHhHHHHHHH
Q 027158          109 KQAAFCYEELILS---QPTV----PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KN----TKALFGICLCSSA  176 (227)
Q Consensus       109 ~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~  176 (227)
                      ++|+.++++++..   .+++    ..++..+|.++...|+   +++|..++++++...+. .+    ...+..++.++..
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  159 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD---LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ  159 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999987   4433    4578999999999999   99999999999987542 12    2234566666665


Q ss_pred             HHh
Q 027158          177 IAQ  179 (227)
Q Consensus       177 ~~~  179 (227)
                      .++
T Consensus       160 ~g~  162 (203)
T 3gw4_A          160 EKN  162 (203)
T ss_dssp             TTC
T ss_pred             CcC
Confidence            554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.51  E-value=8.7e-13  Score=100.76  Aligned_cols=153  Identities=10%  Similarity=-0.035  Sum_probs=129.4

Q ss_pred             CCChHHHHHHHHHHHHhCC--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHH--HHHHHHcC--
Q 027158            3 CQCLDVAKDCIKVLQKQFP--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKRR--VAIAKAQG--   72 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l--~~~~~~~~--   72 (227)
                      .|++++|+..+.+.+..+|  .+..+....+.++...|+.+.|.+.++++.+.+|+    +..+...+  +.+.+..|  
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~  192 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE  192 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence            4899999999999999887  88999999999999999999999999999999983    22333444  44466666  


Q ss_pred             ChHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcC
Q 027158           73 NFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS----------QPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        73 ~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g  140 (227)
                      ++.+|...|+++.+..|+  .+..+++   ++..+|++++|...++.+++.          +|+++.++.+++.+...+|
T Consensus       193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg  269 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG  269 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999888887  3334444   899999999999999988776          5889999999999999988


Q ss_pred             CCCcHHHHHHHHHHHhhhcCCCch
Q 027158          141 GVDNILLAKKYYASTIDLTGGKNT  164 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~~~~~  164 (227)
                      +     +|.+++.++.+..|+ ++
T Consensus       270 k-----~a~~l~~qL~~~~P~-hp  287 (310)
T 3mv2_B          270 L-----DTEDLTNQLVKLDHE-HA  287 (310)
T ss_dssp             C-----TTHHHHHHHHHTTCC-CH
T ss_pred             h-----HHHHHHHHHHHhCCC-Ch
Confidence            6     788999999999996 54

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.8e-14  Score=93.87  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHH
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLA  131 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  131 (227)
                      +.++..+|.++...|++++|+..|++++..+|.++.+|.++|.++...|++++|+..|++++..+|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666665      555666


Q ss_pred             HHHHHHHcCC
Q 027158          132 YADVLYTLGG  141 (227)
Q Consensus       132 la~~~~~~g~  141 (227)
                      +|.++...|+
T Consensus        84 ~~~~~~~~~~   93 (111)
T 2l6j_A           84 LELAQGAVGS   93 (111)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            6666666555

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.50  E-value=1e-12  Score=103.63  Aligned_cols=154  Identities=16%  Similarity=0.107  Sum_probs=127.3

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH------H
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------D   93 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~------~   93 (227)
                      .+...+|.++...|++++|...+++++...|.+.     .++..+|.++...|++++|+..+++++...|...      .
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            4567889999999999999999999999877553     2678899999999999999999999999876542      3


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC---
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQ--------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK---  162 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~---  162 (227)
                      ++..+|.++...|++++|+.++++++...        |....++..+|.++...|+   +++|..++++++...+..   
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~  171 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQPQ  171 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhhccCcH
Confidence            47889999999999999999999999764        3345678889999999999   999999999999987741   


Q ss_pred             -chhHHHhHHHHHHHHHhhh
Q 027158          163 -NTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       163 -~~~~~~~l~~~~~~~~~~~  181 (227)
                       ....+..++.++...++..
T Consensus       172 ~~~~~~~~la~~~~~~g~~~  191 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDLD  191 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHH
Confidence             2345566666666666544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.6e-14  Score=94.06  Aligned_cols=95  Identities=18%  Similarity=0.180  Sum_probs=88.5

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWR   96 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~   96 (227)
                      +...+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999999999      88999


Q ss_pred             HHHHHHHHcccHHHHHHHHHH
Q 027158           97 ELAEIYVSLQMYKQAAFCYEE  117 (227)
Q Consensus        97 ~la~~~~~~~~~~~A~~~~~~  117 (227)
                      .+|.++...|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999988887766544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.49  E-value=3e-13  Score=93.38  Aligned_cols=123  Identities=15%  Similarity=-0.081  Sum_probs=106.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAK   69 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~   69 (227)
                      ..|++++|+..+++++...+...      .++..+|.++...|++++|+.++++++...+..      ..++..+|.++.
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            36899999999999998866432      478899999999999999999999999875432      567889999999


Q ss_pred             HcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           70 AQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      ..|++++|+.++++++...+..      +.++..+|.++...|++++|+.++++++.+...
T Consensus       101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875332      567899999999999999999999999976543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.48  E-value=7.1e-13  Score=82.96  Aligned_cols=85  Identities=22%  Similarity=0.154  Sum_probs=80.9

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  101 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  101 (227)
                      .++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcc
Q 027158          102 YVSLQ  106 (227)
Q Consensus       102 ~~~~~  106 (227)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            87754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.7e-12  Score=104.33  Aligned_cols=156  Identities=15%  Similarity=0.042  Sum_probs=132.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCchh-----------------hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------H
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKR-----------------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------V   59 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~   59 (227)
                      .|+|++|++.|.++++..|....                 ++..+|.+|...|++++|.+++.+++...+...      .
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            58999999999999999885432                 477899999999999999999999998755432      3


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC------CCCHH
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ------PTVPL  127 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~  127 (227)
                      +...++.++...|++++|+.++++++...+.      ...++..+|.++...|+|++|+.++++++...      |....
T Consensus        97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~  176 (434)
T 4b4t_Q           97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD  176 (434)
T ss_dssp             HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence            4556777888899999999999999987543      26789999999999999999999999998652      23356


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          128 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++..++.++...|+   +++|...+++++...+.
T Consensus       177 ~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          177 VHLLESKVYHKLRN---LAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc---HHHHHHHHHHHHHHhhc
Confidence            89999999999999   99999999999988654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.44  E-value=1.9e-12  Score=83.01  Aligned_cols=71  Identities=18%  Similarity=0.061  Sum_probs=45.7

Q ss_pred             cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           88 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        88 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +|+++.+|+.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+   +++|+..|++++++.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhhc
Confidence            466666666666666666666666666666666666666666666666666666   66666666666666553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.42  E-value=1.8e-12  Score=83.13  Aligned_cols=70  Identities=19%  Similarity=0.175  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|++++.+.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            5777777777777777777777777777777777777777777777777777777777777777776654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.41  E-value=9.2e-13  Score=84.04  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           62 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        62 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      +..|.++...|++++|+..|+++++.+|.++. ++..+|.++...|++++|+.+|++++..+|+++.++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            34566666666666666666666666666666 66666666666666666666666666666666665543        3


Q ss_pred             CCCcHHHHHHHHHHHhhhcCC
Q 027158          141 GVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .   +.+++..|+++...+|+
T Consensus        76 ~---~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           76 M---VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             H---HHHHHHHHCCTTHHHHC
T ss_pred             H---HHHHHHHHHHHhccCcc
Confidence            3   66666666666666664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.40  E-value=1.8e-11  Score=108.54  Aligned_cols=62  Identities=21%  Similarity=0.172  Sum_probs=43.5

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF   88 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~   88 (227)
                      +.+.+|..+|.++...|++++|+..|.++     +++..+..+|.++...|++++|+++|..+.+..
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            45667777777777777777777777664     566777777777777777777777776655443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.40  E-value=1.1e-12  Score=83.61  Aligned_cols=91  Identities=13%  Similarity=0.025  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  105 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  105 (227)
                      .+..|.++...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|+++.++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            356788999999999999999999999999998 99999999999999999999999999999999888744        


Q ss_pred             ccHHHHHHHHHHHHhhCCCC
Q 027158          106 QMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus       106 ~~~~~A~~~~~~al~~~p~~  125 (227)
                      +.+.+++.+|++++..+|++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHHhccCccc
Confidence            67788888888888777765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.38  E-value=2.3e-11  Score=82.66  Aligned_cols=110  Identities=18%  Similarity=0.085  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHH
Q 027158           39 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFC  114 (227)
Q Consensus        39 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~  114 (227)
                      ++++|+.+|+++.+......  .  +|.+|...+.+++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            45566666666665542222  2  566665555566666666666554  456666666666665    5666666666


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHHHhhhc
Q 027158          115 YEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       115 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      |+++.+.  .++.+.+++|.+|..    .++   +++|+.+|+++.+..
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d---~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKN---EKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcC---HHHHHHHHHHHHHCC
Confidence            6666554  455666666666665    455   666666666666653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.34  E-value=1.7e-10  Score=89.83  Aligned_cols=144  Identities=13%  Similarity=0.016  Sum_probs=114.2

Q ss_pred             HHHHHhCCCchhhH--HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---C-ChHHHHHHHHH-
Q 027158           14 KVLQKQFPESKRVG--RLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---G-NFPTAIEWLNK-   83 (227)
Q Consensus        14 ~~~~~~~p~~~~~~--~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~-~~~~A~~~~~~-   83 (227)
                      +++....|.++.++  ++.|..+...++   ..+|+.+|+++++.+|+++.++..++.++...   + .......-+.+ 
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a  263 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE  263 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence            34555667776664  566777776654   47899999999999999999999888877532   1 11111122222 


Q ss_pred             -----HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158           84 -----YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus        84 -----~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                           ++..+|.++.++..++..+...|++++|+..+++|+.++|+ ..++..+|.++...|+   +++|++.|.+++.+
T Consensus       264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM---NREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence                 22457999999999999999999999999999999999974 7788999999999999   99999999999999


Q ss_pred             cCC
Q 027158          159 TGG  161 (227)
Q Consensus       159 ~~~  161 (227)
                      +|.
T Consensus       340 ~P~  342 (372)
T 3ly7_A          340 RPG  342 (372)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            996

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.34  E-value=5e-11  Score=80.99  Aligned_cols=120  Identities=11%  Similarity=-0.133  Sum_probs=104.8

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIE   79 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~   79 (227)
                      +++++|+..|+++.+..+.  .+.  +|.++...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            3689999999999988743  333  999999999999999999999986  689999999999999    899999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      +|+++.+.  .++.++++||.+|..    .+++++|+.+|+++.+..  ++.+...++
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            99999876  689999999999999    899999999999999874  455555544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.34  E-value=7.1e-11  Score=99.96  Aligned_cols=162  Identities=8%  Similarity=-0.105  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAE-KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL   85 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l   85 (227)
                      +.....|++++...|.++.+|+..+..+...|+.++|. ..|++++...|.+..+|..++......|++++|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34567899999999999999999999999999988897 99999999999999899999999999999999999999998


Q ss_pred             HHc-----------CC-----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHc-CC
Q 027158           86 ETF-----------MA-----------DHDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVPLYHLAYADVLYTL-GG  141 (227)
Q Consensus        86 ~~~-----------p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~-g~  141 (227)
                      ...           |.           .+.+|...+.+..+.|..+.|..+|.+|++. .+.....+...|.+.+.. ++
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            752           43           3457888888888889999999999999887 445566677777666665 35


Q ss_pred             CCcHHHHHHHHHHHhhhcCCCchhHHHhHHH
Q 027158          142 VDNILLAKKYYASTIDLTGGKNTKALFGICL  172 (227)
Q Consensus       142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  172 (227)
                         .+.|...|+.+++..|+ .+..+..++.
T Consensus       486 ---~e~Ar~ife~~Lk~~p~-~~~~w~~y~~  512 (679)
T 4e6h_A          486 ---TKTACKVLELGLKYFAT-DGEYINKYLD  512 (679)
T ss_dssp             ---CHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHCCC-chHHHHHHHH
Confidence               78899999999998885 6555544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.33  E-value=2.8e-10  Score=96.34  Aligned_cols=155  Identities=17%  Similarity=0.067  Sum_probs=137.8

Q ss_pred             CChHHHH-HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCC-----------CHHH
Q 027158            4 QCLDVAK-DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----------NPL-----------DPVL   60 (227)
Q Consensus         4 ~~~~~A~-~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----------~p~-----------~~~~   60 (227)
                      |+.++|. .+|++++...|.+..+++..+......|+++.|..+|++++..           .|.           ...+
T Consensus       357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v  436 (679)
T 4e6h_A          357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV  436 (679)
T ss_dssp             SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence            5667786 9999999999999999999999999999999999999999975           253           3457


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      |...+....+.|..+.|...|.++++. .+.....|...|.+....+ +++.|..+|+.+++..|+++..+..++.....
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            889999999999999999999999998 5556788888888877765 49999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHhhhcCC
Q 027158          139 LGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       139 ~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .|+   .+.|...|++++...|+
T Consensus       517 ~~~---~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          517 VNE---ESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HTC---HHHHHHHHHHHTTTSSS
T ss_pred             CCC---HHHHHHHHHHHHHhcCC
Confidence            999   99999999999999873

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.31  E-value=1.4e-11  Score=100.61  Aligned_cols=126  Identities=10%  Similarity=-0.001  Sum_probs=107.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----cCCC---HHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLED-----NPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDA   94 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~   94 (227)
                      +..+..+|+|++|+..++++++.     .|++   ...+.++|.+|..+|++++|+.++++++++     .|++   ...
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            44567889999999999999986     4454   467899999999999999999999999976     3455   457


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158           95 WRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPL---YHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus        95 ~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      +.+||.+|..+|++++|+.+|++|+.+     .|++|.   ....++.++..+|.   +++|...|.++.+..
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~---~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM---FRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            899999999999999999999999964     577765   46788889999999   999999999987643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.30  E-value=6.2e-12  Score=100.21  Aligned_cols=154  Identities=12%  Similarity=0.012  Sum_probs=60.7

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      |++++|+.+++.+++..++ +.+...++.+|.+.|++.++.++++     .| +..+|..+|..+...|++++|..+|.+
T Consensus        75 g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~  147 (449)
T 1b89_A           75 GNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNN  147 (449)
T ss_dssp             -----------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4555555555555443221 3333333333333344333333321     12 123455555555555555555555554


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHH
Q 027158           84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL--------------------------SQPTVPLYHLAYADVLY  137 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~  137 (227)
                      +        ..|..+|.++.+.|+|++|+++++++..                          +. .++.-...+...|.
T Consensus       148 a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye  218 (449)
T 1b89_A          148 V--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ  218 (449)
T ss_dssp             T--------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred             h--------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence            3        2445555555555555555555555410                          00 22223334567788


Q ss_pred             HcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          138 TLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       138 ~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      +.|.   +++|+..+++++.+++. ....+..++.++...
T Consensus       219 k~G~---~eEai~lLe~aL~le~a-h~~~ftel~il~~ky  254 (449)
T 1b89_A          219 DRGY---FEELITMLEAALGLERA-HMGMFTELAILYSKF  254 (449)
T ss_dssp             HTTC---HHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHTT
T ss_pred             HCCC---HHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHhc
Confidence            8888   99999999999999984 777888887777653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.26  E-value=3.5e-11  Score=98.24  Aligned_cols=121  Identities=11%  Similarity=0.050  Sum_probs=103.0

Q ss_pred             CCCChHHHHHHHHHHHHh-----CCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQ-----FPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLD---PVLHKRRV   65 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~l~   65 (227)
                      ..|+|++|+.++++++..     .|+++   ..+..+|.+|..+|+|++|+.++++++..     .|++   ...+.++|
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            479999999999999985     34554   56788999999999999999999999986     4444   46789999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHH-----cCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 027158           66 AIAKAQGNFPTAIEWLNKYLET-----FMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQ  122 (227)
Q Consensus        66 ~~~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~  122 (227)
                      .+|..+|++++|+.+|++++++     .|+++   .....++.++..++.+++|...|.++.+..
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999976     46664   466789999999999999999999987543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.26  E-value=5.9e-10  Score=83.55  Aligned_cols=151  Identities=17%  Similarity=0.140  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHc---------------------CCHHHHHHHHHHHHhc-------------
Q 027158            8 VAKDCIKVLQKQFPESKRVGRLEGILLEAK---------------------GLWAEAEKAYSSLLED-------------   53 (227)
Q Consensus         8 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------------------~~~~~A~~~~~~~l~~-------------   53 (227)
                      -.+.+++.++..+|++.......+..|..-                     .++..|..+|.++...             
T Consensus        50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~  129 (301)
T 3u64_A           50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFT  129 (301)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            356788888889998887766655444221                     1234555555544332             


Q ss_pred             ------------------CCCCHHHHHHHHHHHHH---c--C------ChHHHHHHHHHHHHHcCC--CHHHHHHHHHHH
Q 027158           54 ------------------NPLDPVLHKRRVAIAKA---Q--G------NFPTAIEWLNKYLETFMA--DHDAWRELAEIY  102 (227)
Q Consensus        54 ------------------~p~~~~~~~~l~~~~~~---~--~------~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~  102 (227)
                                        +|+++++++-.|.+...   .  |      ....|...++++++++|+  +..+|..+|.+|
T Consensus       130 ~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY  209 (301)
T 3u64_A          130 REVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFY  209 (301)
T ss_dssp             HHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence                              34456666656554433   1  3      367999999999999999  677999999999


Q ss_pred             HHc-----ccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhhcCC
Q 027158          103 VSL-----QMYKQAAFCYEELILSQPTV-PLYHLAYADVLYT-LGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       103 ~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ...     |+.++|..+|++++.++|+. ...++.+|..+.. .|+   ++.|..++++++...|.
T Consensus       210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd---~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN---RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHCCGG
T ss_pred             HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCCC
Confidence            995     99999999999999999975 9999999999988 499   99999999999998885

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.26  E-value=4.8e-11  Score=95.17  Aligned_cols=162  Identities=10%  Similarity=-0.018  Sum_probs=121.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +.|+|++|..+|.++        ..+..+|.++...|++++|++.+.++     .++.+|...+.++...|+++.|..+.
T Consensus       134 ~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~  200 (449)
T 1b89_A          134 DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCG  200 (449)
T ss_dssp             ---CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence            457777777777765        35667788888888888888888877     36777777778888888888886666


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC-
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG-  160 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~-  160 (227)
                      ... ..   +++-...+..+|...|.+++|+.++++++..++.+...+..+|.++.+-. +++..++++.|...+.+.| 
T Consensus       201 l~L-~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k~  275 (449)
T 1b89_A          201 LHI-VV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKV  275 (449)
T ss_dssp             TTT-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHH
T ss_pred             HHH-Hh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcHH
Confidence            642 23   33444567888999999999999999999999999999999998887654 3347888888887777776 


Q ss_pred             ----CCchhHHHhHHHHHHHHHhhhc
Q 027158          161 ----GKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       161 ----~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                          . +...|..+...+....++..
T Consensus       276 ~~~~~-~~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          276 LRAAE-QAHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             HHHHH-TTTCHHHHHHHHHHTTCHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHhhchHHH
Confidence                4 66777788888877666543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.24  E-value=2.6e-10  Score=88.74  Aligned_cols=123  Identities=14%  Similarity=0.097  Sum_probs=101.5

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC-------HHHHH-HHHH--HHHhcCCCCHHHHHHHHHHHHHcCC
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL-------WAEAE-KAYS--SLLEDNPLDPVLHKRRVAIAKAQGN   73 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-------~~~A~-~~~~--~~l~~~p~~~~~~~~l~~~~~~~~~   73 (227)
                      ..+.+|+.+|+++++.+|+++.++..++.++.....       ...++ ..+.  .++..+|.++.++..++..+...|+
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd  292 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence            346889999999999999999999988888753211       11111 1222  2345689999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158           74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  127 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  127 (227)
                      +++|+..+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          293 TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            99999999999999974 778899999999999999999999999999998754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.24  E-value=3.8e-10  Score=100.37  Aligned_cols=156  Identities=10%  Similarity=-0.021  Sum_probs=108.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------------------
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------------------------   56 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------------------------   56 (227)
                      +.|++++|+..|.++     +++..+...|.++...|++++|+++|..+.+..++                         
T Consensus      1117 ~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~ 1191 (1630)
T 1xi4_A         1117 QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN 1191 (1630)
T ss_pred             hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHh
Confidence            467888888888664     67778888888888888888888888776654422                         


Q ss_pred             --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-----------
Q 027158           57 --DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-----------  123 (227)
Q Consensus        57 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------  123 (227)
                        +...+..+|..+...|++++|..+|.++        ..|..+|.++...|++++|++++++|....+           
T Consensus      1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A         1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence              2234556777777888888888888774        4677777777777777777777776644332           


Q ss_pred             --------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHH
Q 027158          124 --------------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  174 (227)
Q Consensus       124 --------------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (227)
                                    .++..+..++..|...|.   +++|+..++.++.++|. +...+..++.++
T Consensus      1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~---feEAI~LlE~aL~Lera-H~gmftELaiLy 1324 (1630)
T 1xi4_A         1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILY 1324 (1630)
T ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccChh-HhHHHHHHHHHH
Confidence                          244456677777777777   88888888777777764 544443333333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.21  E-value=2.6e-10  Score=71.84  Aligned_cols=71  Identities=11%  Similarity=-0.039  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           54 NPLDPVLHKRRVAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      +|+++.++..+|.++...++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46666666666666654443   566666666666666666666666666666666666666666666666665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.18  E-value=3.9e-10  Score=90.47  Aligned_cols=156  Identities=13%  Similarity=0.007  Sum_probs=126.7

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----------------VLHKRRVAIAKAQGNFPTAIEWLNKYLE   86 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~~l~   86 (227)
                      |......|..+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|+.++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55667788889999999999999999999887642                 3578999999999999999999999999


Q ss_pred             HcCCCHH------HHHHHHHHHHHcccHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           87 TFMADHD------AWRELAEIYVSLQMYKQAAFCYEELILSQP------TVPLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        87 ~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      ..+....      +...++.++...|+++.|+.++++++...+      ....++..+|.++...|+   +.+|...+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~  160 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ---YKDSLALIND  160 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC---HHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC---hHHHHHHHHH
Confidence            8776532      456678888889999999999999996543      235688999999999999   9999999999


Q ss_pred             HhhhcCC-----CchhHHHhHHHHHHHHHhhhc
Q 027158          155 TIDLTGG-----KNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       155 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      ++.....     .....+..++.++..++++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
T 4b4t_Q          161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAK  193 (434)
T ss_dssp             HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHH
Confidence            9876332     234566677777776666543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=1.4e-09  Score=73.96  Aligned_cols=87  Identities=16%  Similarity=0.058  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158           42 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAFCYE  116 (227)
Q Consensus        42 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~  116 (227)
                      .+...|.+.+..+|.+..+.+.+|.++.+.+   +.++++..++..++.+ | .+.++++++|..+++.|+|++|..+++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3444444444444455555555555555544   3335555555555554 3 234455555555555555555555555


Q ss_pred             HHHhhCCCCHHH
Q 027158          117 ELILSQPTVPLY  128 (227)
Q Consensus       117 ~al~~~p~~~~~  128 (227)
                      ++++.+|++..+
T Consensus        96 ~lL~ieP~n~QA  107 (152)
T 1pc2_A           96 GLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHCTTCHHH
T ss_pred             HHHhcCCCCHHH
Confidence            555555554444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.09  E-value=1.1e-09  Score=68.87  Aligned_cols=71  Identities=10%  Similarity=-0.036  Sum_probs=67.5

Q ss_pred             cCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           88 FMADHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        88 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +|+++..+..+|.+++..++   .++|...+++++..+|+++.+++.+|..++..|+   +++|+.+|+++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~---y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence            68999999999999987665   7999999999999999999999999999999999   99999999999999996

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.05  E-value=5e-09  Score=71.23  Aligned_cols=102  Identities=17%  Similarity=0.004  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCCCcHHHH
Q 027158           74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQ-P-TVPLYHLAYADVLYTLGGVDNILLA  148 (227)
Q Consensus        74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~~~~A  148 (227)
                      ...+...|.+.+..+|.+..+.+++|.++.+.+   +.++++.+++.+++.+ | .+..+++.+|..++++|+   |++|
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~---Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---YEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC---HHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC---HHHH
Confidence            356777888888888999999999999999987   7789999999999998 7 568899999999999999   9999


Q ss_pred             HHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          149 KKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      +.+++++++..|+ +..+......+...+.+
T Consensus        91 ~~y~~~lL~ieP~-n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           91 LKYVRGLLQTEPQ-NNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence            9999999999996 88777776666666543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.03  E-value=6.5e-09  Score=66.86  Aligned_cols=73  Identities=12%  Similarity=0.024  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHH
Q 027158           95 WRELAEIYVSLQMYKQAAFCYEELILSQ-------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL  167 (227)
Q Consensus        95 ~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~  167 (227)
                      ++.+|..++..|+|..|+.+|+.|+...       +..+.++..+|.+++++|+   ++.|+.++++++++.|+ +..+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~---~~~A~~~~~~al~l~P~-~~~~~   83 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD---LDKALLLTKKLLELDPE-HQRAN   83 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCC-CHHHH
Confidence            3344444444444444444444444321       1223344444444444444   44444444444444443 33333


Q ss_pred             HhHH
Q 027158          168 FGIC  171 (227)
Q Consensus       168 ~~l~  171 (227)
                      .++.
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            3333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.99  E-value=1.4e-08  Score=65.21  Aligned_cols=78  Identities=9%  Similarity=0.028  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           57 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      ++.-.+.+|..++..|++..|+.+|+.+++..       +..+.++..+|.+++..|+++.|+.++++++...|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            56678899999999999999999999999974       23578999999999999999999999999999999999998


Q ss_pred             HHHHH
Q 027158          130 LAYAD  134 (227)
Q Consensus       130 ~~la~  134 (227)
                      .+++.
T Consensus        84 ~n~~~   88 (104)
T 2v5f_A           84 GNLKY   88 (104)
T ss_dssp             HHHHH
T ss_pred             hhHHH
Confidence            88763

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.96  E-value=4.4e-09  Score=84.57  Aligned_cols=94  Identities=11%  Similarity=0.113  Sum_probs=76.8

Q ss_pred             HcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHH-----cCCC---HHHHHHHH
Q 027158           36 AKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWRELA   99 (227)
Q Consensus        36 ~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la   99 (227)
                      ..|+|++|+..++++++.     .|+++   ..+.++|.+|..+|++++|+.++++++.+     .|++   +..+.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            458899999999999885     45554   66788999999999999999999999876     3444   45788999


Q ss_pred             HHHHHcccHHHHHHHHHHHHhh-----CCCCHHHH
Q 027158          100 EIYVSLQMYKQAAFCYEELILS-----QPTVPLYH  129 (227)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~  129 (227)
                      .+|..+|++++|+.+|++|+.+     .|++|.+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999999964     57776653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.94  E-value=8.7e-08  Score=78.57  Aligned_cols=144  Identities=11%  Similarity=-0.029  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------
Q 027158            7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-------------------   67 (227)
Q Consensus         7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-------------------   67 (227)
                      .....+|++++...|..+.+|+..+..+...|+.+.|...|++++.. |.+...+...+..                   
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~  274 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA  274 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence            45678999999999999999999999999999999999999999999 9887666544432                   


Q ss_pred             ---------------------HHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCC
Q 027158           68 ---------------------AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        68 ---------------------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~  125 (227)
                                           ..+.+..+.|...|.++ ...+.....|...|.+-...+ +++.|...|+.+++..|+.
T Consensus       275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence                                 12244556666666666 322224455555555555544 4667777777777666666


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158          126 PLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus       126 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      +..+..++......|+   .+.|...|+++
T Consensus       354 ~~~~~~yid~e~~~~~---~~~aR~l~er~  380 (493)
T 2uy1_A          354 TLLKEEFFLFLLRIGD---EENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHHHTC---HHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence            6666666666666666   66666666665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.94  E-value=8.8e-09  Score=77.27  Aligned_cols=107  Identities=11%  Similarity=-0.049  Sum_probs=92.3

Q ss_pred             HhCCCchhhHHHHHHHHHH-----cC------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CChHHHHH
Q 027158           18 KQFPESKRVGRLEGILLEA-----KG------LWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQ-----GNFPTAIE   79 (227)
Q Consensus        18 ~~~p~~~~~~~~~a~~~~~-----~~------~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~-----~~~~~A~~   79 (227)
                      ...|+++..++..|.....     .|      ....|...++++++++|+  +..+|..+|.+|...     |+.++|..
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            3456777777777766543     12      367899999999999999  677999999999995     99999999


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCC
Q 027158           80 WLNKYLETFMAD-HDAWRELAEIYVS-LQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        80 ~~~~~l~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~  124 (227)
                      +|+++++++|+. ...++..|..+.. .|+++.|..++++++..+|.
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999999975 9999999999988 49999999999999998876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.91  E-value=1.4e-08  Score=81.73  Aligned_cols=95  Identities=11%  Similarity=0.067  Sum_probs=64.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHH-----cCCC---HHHHHH
Q 027158           34 LEAKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWRE   97 (227)
Q Consensus        34 ~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~   97 (227)
                      +..+|++++|+..++++++.     .|+++   .++.++|.+|..+|++++|+.++++++.+     .|++   ...+.+
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44567777777777777764     34443   55677777777777777777777777765     2344   346677


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhh-----CCCCHHH
Q 027158           98 LAEIYVSLQMYKQAAFCYEELILS-----QPTVPLY  128 (227)
Q Consensus        98 la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  128 (227)
                      ||.+|..+|++++|+.++++|+.+     .|++|.+
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~  412 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI  412 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            777777777777777777777743     4666543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.91  E-value=2.1e-06  Score=70.54  Aligned_cols=155  Identities=8%  Similarity=-0.104  Sum_probs=126.6

Q ss_pred             CCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKA   70 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~   70 (227)
                      ..|++++|+.+|+++.... +.+...+..+-.++...         +..+.|..+|+++.... +-+...|..+...+.+
T Consensus        38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~  117 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA  117 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999875 23455555555555443         34788999999988763 3367889999999999


Q ss_pred             cCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHH
Q 027158           71 QGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLA  148 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A  148 (227)
                      .|++++|..+|++..... +.+...|..+...|.+.|++++|..+|++..... ..+...+..+-.++.+.|+   .++|
T Consensus       118 ~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~---~d~A  194 (501)
T 4g26_A          118 KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN---ADKV  194 (501)
T ss_dssp             HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC---HHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC---HHHH
Confidence            999999999999988753 3468889999999999999999999999998654 2357778889999999999   9999


Q ss_pred             HHHHHHHhhhc
Q 027158          149 KKYYASTIDLT  159 (227)
Q Consensus       149 ~~~~~~~~~~~  159 (227)
                      ...+++..+..
T Consensus       195 ~~ll~~Mr~~g  205 (501)
T 4g26_A          195 YKTLQRLRDLV  205 (501)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999987754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.78  E-value=2e-08  Score=80.82  Aligned_cols=87  Identities=10%  Similarity=-0.009  Sum_probs=76.0

Q ss_pred             HcCChHHHHHHHHHHHHH-----cCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCHH---HHHHHH
Q 027158           70 AQGNFPTAIEWLNKYLET-----FMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPL---YHLAYA  133 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la  133 (227)
                      ..|++++|+..+++++++     .|++   ...+.++|.+|..+|+|++|+.++++++.+     .|++|.   .+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468899999999999986     4555   457889999999999999999999999964     466654   689999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .+|..+|+   +++|..+|++++++.
T Consensus       390 ~~~~~qg~---~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          390 RLYMGLEN---KAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred             HHHHhccC---HHHHHHHHHHHHHHH
Confidence            99999999   999999999999873

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.73  E-value=3.6e-08  Score=79.34  Aligned_cols=101  Identities=15%  Similarity=-0.061  Sum_probs=81.7

Q ss_pred             CCChHHHHHHHHHHHHh-----CCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQ-----FPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLD---PVLHKRRVA   66 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~l~~   66 (227)
                      .|++++|+..+++++..     .|+++   ..+..+|.+|..+|+|++|+.++++++..     .|++   ...++++|.
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~  379 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK  379 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence            58999999999999975     34554   55778899999999999999999999986     3444   467899999


Q ss_pred             HHHHcCChHHHHHHHHHHHHH-----cCCCHH---HHHHHHHHHH
Q 027158           67 IAKAQGNFPTAIEWLNKYLET-----FMADHD---AWRELAEIYV  103 (227)
Q Consensus        67 ~~~~~~~~~~A~~~~~~~l~~-----~p~~~~---~~~~la~~~~  103 (227)
                      +|..+|++++|+.++++++++     .|+++.   +..+|+.+..
T Consensus       380 ~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          380 LQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999986     466655   3445555543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.65  E-value=4.4e-06  Score=68.47  Aligned_cols=146  Identities=11%  Similarity=0.047  Sum_probs=118.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHH----------------------------------------HHHcCCHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGIL----------------------------------------LEAKGLWAE   42 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~----------------------------------------~~~~~~~~~   42 (227)
                      .|+.++|..+|++++.. |.+...+...+..                                        ..+.++.+.
T Consensus       226 ~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~  304 (493)
T 2uy1_A          226 IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL  304 (493)
T ss_dssp             TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence            57888999999999988 8776555443332                                        223567889


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           43 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        43 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                      |...|.++ ...+....+|...+.+....+ +.+.|...|+.+++..|+++..|...+......|+.+.|..+|+++   
T Consensus       305 AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~---  380 (493)
T 2uy1_A          305 FRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL---  380 (493)
T ss_dssp             HHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS---
T ss_pred             HHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence            99999999 433345677777777776666 6999999999999999999999999999999999999999999998   


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          122 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       122 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                       +.....|......-...|+   .+.+...++++++
T Consensus       381 -~k~~~lw~~~~~fE~~~G~---~~~~r~v~~~~~~  412 (493)
T 2uy1_A          381 -EKTSRMWDSMIEYEFMVGS---MELFRELVDQKMD  412 (493)
T ss_dssp             -CCBHHHHHHHHHHHHHHSC---HHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence             4567888888888888899   9999888888885

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.60  E-value=7.5e-07  Score=58.41  Aligned_cols=87  Identities=16%  Similarity=0.028  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHc-C-CCHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158           42 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT---AIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAFCYE  116 (227)
Q Consensus        42 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~  116 (227)
                      .+...|.+.+..++.+..+.+.+|.++.+..+...   ++.+++..+..+ | ..-+..+.||..+++.|+|++|..+++
T Consensus        19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~   98 (126)
T 1nzn_A           19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   98 (126)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34444444444444555555555555555444333   555555554443 2 233445555555555555555555555


Q ss_pred             HHHhhCCCCHHH
Q 027158          117 ELILSQPTVPLY  128 (227)
Q Consensus       117 ~al~~~p~~~~~  128 (227)
                      .+++..|++..+
T Consensus        99 ~lL~~eP~n~QA  110 (126)
T 1nzn_A           99 GLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHCTTCHHH
T ss_pred             HHHHhCCCCHHH
Confidence            555555555444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.57  E-value=4.4e-06  Score=56.09  Aligned_cols=119  Identities=12%  Similarity=0.098  Sum_probs=87.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158           53 DNPLDPVLHKRRVAIAKAQGNF------PTAIEWLNKYLETFMAD--------HDAWRELAEIYVSLQMYKQAAFCYEEL  118 (227)
Q Consensus        53 ~~p~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a  118 (227)
                      ..|++++.|..........|+.      ++-+..|++++..-|..        ...|...|.. ...++.+.|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4678888888888777777877      77778888888776653        3466677755 5568888888888888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          119 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       119 l~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      +..+.....+|...|..-.+.|+   ...|...+.+++.+.|.  +.-+...++...+.
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k--~~~~le~a~~nl~~  140 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAV--PLEMLEIALRNLNL  140 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCB--CHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCC--cHHHHHHHHHhhhc
Confidence            88777778888888888888888   99999999999888873  33444444444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.51  E-value=1.6e-05  Score=65.20  Aligned_cols=151  Identities=9%  Similarity=-0.052  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHc-CCCHHHH
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGN---------FPTAIEWLNKYLETF-MADHDAW   95 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~l~~~-p~~~~~~   95 (227)
                      +...-..+.+.|+.++|+.+|+++.+.. +-+...|..+..++...+.         .++|...|++..... +.+...|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            4455577788999999999999998863 3467778888777766543         678999999887653 2368889


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHH
Q 027158           96 RELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  174 (227)
Q Consensus        96 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (227)
                      ..+...|.+.|++++|..+|++..... +.+...+..+-..+...|+   .++|...|.+..+..-.++...+..++.++
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~---~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD---ADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999988653 3467788888899999999   999999999998765444677777787777


Q ss_pred             HHHHhh
Q 027158          175 SAIAQL  180 (227)
Q Consensus       175 ~~~~~~  180 (227)
                      .+.++.
T Consensus       186 ~~~g~~  191 (501)
T 4g26_A          186 MDTKNA  191 (501)
T ss_dssp             HHTTCH
T ss_pred             hhCCCH
Confidence            776653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.50  E-value=3.5e-06  Score=55.24  Aligned_cols=101  Identities=17%  Similarity=0.007  Sum_probs=83.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCCCcHHH
Q 027158           73 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ---AAFCYEELILSQ-P-TVPLYHLAYADVLYTLGGVDNILL  147 (227)
Q Consensus        73 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~~~~  147 (227)
                      ....+...|.+.+..++.+..+.+++|.++.+..+...   ++.+++..+..+ | ..-..++.+|..++++|+   |.+
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~---Y~~   92 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---YEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh---HHH
Confidence            34566777888888888999999999999999876665   999999999876 5 456789999999999999   999


Q ss_pred             HHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158          148 AKKYYASTIDLTGGKNTKALFGICLCSSAI  177 (227)
Q Consensus       148 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (227)
                      |..+++.+++..|+ +..+..-...+..++
T Consensus        93 A~~~~~~lL~~eP~-n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQ-NNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence            99999999999996 766655444444433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.44  E-value=7e-06  Score=55.13  Aligned_cols=122  Identities=14%  Similarity=-0.009  Sum_probs=99.8

Q ss_pred             HhCCCchhhHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158           18 KQFPESKRVGRLEGILLEAKGLW------AEAEKAYSSLLEDNPLD--------PVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus        18 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~~l~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      -..|++++.|..........|+.      +.-+..|++++..-|..        ..+|...+.. ...++.++|...|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35689999999999999988999      88899999999986643        4556666654 566999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ++......+..|...|..-.++|+...|...+.+++...|..... +..|..-...|.
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~  142 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQK  142 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTC
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCC
Confidence            999888889999999999999999999999999999999986553 444555556665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.05  E-value=0.0001  Score=50.55  Aligned_cols=115  Identities=13%  Similarity=-0.081  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC---CCHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDN---PLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM---ADHD   93 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~   93 (227)
                      +++.-...+...|.|+.|+-....++...   |+-      ..++..+|..++..|+|..|...|+++++...   .++.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34445556666777777777777665542   221      13566777777777777777777777765432   1211


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      ....++.    ...+..       ... .+.+.+..+.+|.|+.++|+   +++|+..++.+
T Consensus       102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~---~~~Ai~~Le~I  148 (167)
T 3ffl_A          102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ---DKDAIAILDGI  148 (167)
T ss_dssp             --------------------------C-CCCHHHHHHHHHHHHHHTTC---HHHHHHHHHTS
T ss_pred             ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC---HHHHHHHHhcC
Confidence            1111110    000000       011 12344677888888888888   88888887654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.03  E-value=6.7e-05  Score=51.41  Aligned_cols=122  Identities=13%  Similarity=0.086  Sum_probs=75.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch---------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK---------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN---PLDPVLHKRRVAIAK   69 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~   69 (227)
                      +.|.|+-|+.+...++....+++         .++..+|+.++..++|..|...|++++...   +........++.   
T Consensus        32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~---  108 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN---  108 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------
T ss_pred             HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc---
Confidence            46788889888888776543333         378899999999999999999999998752   222211101110   


Q ss_pred             HcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158           70 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  136 (227)
Q Consensus        70 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  136 (227)
                       ......       ... .+.+.+..+.++.|+...+++++|+..++..- .....+.+...||..|
T Consensus       109 -~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          109 -SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             -cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence             000000       011 13456778888889999999998888866531 1224566667777654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.01  E-value=0.00023  Score=46.86  Aligned_cols=74  Identities=8%  Similarity=-0.108  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158           57 DPVLHKRRVAIAKAQGN---FPTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  130 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  130 (227)
                      ++.+.+++|.++.+..+   ..+++.+++..+..+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            34555555555555443   23556666666655553 2455666666666666666666666666666666655433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.96  E-value=0.0006  Score=45.45  Aligned_cols=72  Identities=8%  Similarity=-0.099  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           57 DPVLHKRRVAIAKAQGN---FPTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      ++.+.++++.++.+..+   ..+++.+++..+...|. .-+..+.+|..+++.|+|++|..+.+.+++..|+|..+
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            44555555555555433   23455555555555543 23445555555555555555555555555555555444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.90  E-value=0.0011  Score=44.14  Aligned_cols=85  Identities=12%  Similarity=0.012  Sum_probs=70.3

Q ss_pred             CCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch
Q 027158           89 MADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  164 (227)
Q Consensus        89 p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~  164 (227)
                      +.++.+.+++|.++....   +..+++.+++..+...|. .-..++.+|..++++|+   |.+|..+.+..++..|+ +.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~---Y~~Ar~y~d~lL~~eP~-n~  111 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERN-NK  111 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTCCC-CH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC-cH
Confidence            457889999999998875   456899999999998885 46789999999999999   99999999999999996 76


Q ss_pred             hHHHhHHHHHHHH
Q 027158          165 KALFGICLCSSAI  177 (227)
Q Consensus       165 ~~~~~l~~~~~~~  177 (227)
                      .+..-...+..++
T Consensus       112 QA~~Lk~~Ie~~i  124 (144)
T 1y8m_A          112 QVGALKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6655444444443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.85  E-value=0.00038  Score=45.79  Aligned_cols=85  Identities=12%  Similarity=0.014  Sum_probs=70.3

Q ss_pred             CCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchh
Q 027158           90 ADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTK  165 (227)
Q Consensus        90 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~  165 (227)
                      -++.+.+++|.++.+..   +...++.+++..++.+|. .-..++.+|..++++|+   |.+|..+...+++..|+ +..
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd---Y~~Ar~y~d~lL~~eP~-N~Q  113 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERN-NKQ  113 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTTCTT-CHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCC-CHH
Confidence            46788999999998875   456899999999998884 47789999999999999   99999999999999996 776


Q ss_pred             HHHhHHHHHHHHH
Q 027158          166 ALFGICLCSSAIA  178 (227)
Q Consensus       166 ~~~~l~~~~~~~~  178 (227)
                      +..-...+..++.
T Consensus       114 A~~Lk~~Ie~ki~  126 (134)
T 3o48_A          114 VGALKSMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6655555544444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00016  Score=61.76  Aligned_cols=112  Identities=18%  Similarity=0.216  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHH--Hc-CCHHHHHHHHHHHHhc--------CCCC----------HHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLE--AK-GLWAEAEKAYSSLLED--------NPLD----------PVLHKRR   64 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~--~~-~~~~~A~~~~~~~l~~--------~p~~----------~~~~~~l   64 (227)
                      ++.|+.+++++...+|.... .+..+.+..  .. .+--+|+....+.++.        .+.+          ...+...
T Consensus       265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            46688888888888775432 222222221  11 2334666666666532        2222          2345555


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158           65 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  118 (227)
Q Consensus        65 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  118 (227)
                      +..+...|+++-|+.+-++++..-|.+...|..|+.+|...|+|+.|+-.++.+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            666777888888888888888888888888888888888888888888766554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.0008  Score=57.54  Aligned_cols=116  Identities=12%  Similarity=-0.065  Sum_probs=87.0

Q ss_pred             HcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CChHHHHHHHHHHHHH--------cCCC----------HH
Q 027158           36 AKGL-WAEAEKAYSSLLEDNPLDPVLHKRRVAIAK--AQ-GNFPTAIEWLNKYLET--------FMAD----------HD   93 (227)
Q Consensus        36 ~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--~~-~~~~~A~~~~~~~l~~--------~p~~----------~~   93 (227)
                      ..++ ++.|+..+++....+|.....+ ..+.+..  .. .+--+|+..+.+.++.        .+.+          ..
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            3455 6889999999999999765433 2222222  22 2344678888877742        1222          23


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  155 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~  155 (227)
                      ....-+..+...|+|+.|+.+.++|+...|.....|..|+.+|..+|+   |+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d---~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE---YEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc---HHHHHHHHhcC
Confidence            455567788889999999999999999999999999999999999999   99999877655

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.011  Score=41.03  Aligned_cols=104  Identities=14%  Similarity=0.003  Sum_probs=57.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158           33 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA  112 (227)
Q Consensus        33 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~  112 (227)
                      .....|+++.|.+..+..     ++...|..+|......|+++-|+.+|.++-     +   +..+..+|...|+-+.-.
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHHHHhCCHHHHH
Confidence            345667888887776654     567778888888888888888888877642     1   222333344444444443


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          113 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       113 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ..-+.+......     .....+++.+|+   +++++..|.+.-+
T Consensus        81 kla~iA~~~g~~-----n~af~~~l~lGd---v~~~i~lL~~~~r  117 (177)
T 3mkq_B           81 KMQNIAQTREDF-----GSMLLNTFYNNS---TKERSSIFAEGGS  117 (177)
T ss_dssp             HHHHHHHHTTCH-----HHHHHHHHHHTC---HHHHHHHHHHTTC
T ss_pred             HHHHHHHHCccH-----HHHHHHHHHcCC---HHHHHHHHHHCCC
Confidence            333333322221     111233445566   6666666544433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.12  E-value=0.038  Score=45.11  Aligned_cols=81  Identities=17%  Similarity=0.020  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHH
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC  173 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  173 (227)
                      ....||++......+..|..+|.+|..+.|++...+..+|.+....|+   .-.|+-+|.+++..... .+.+.-++...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~---~l~a~y~y~rsl~~~~P-f~~a~~nL~~~  229 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD---HLTTIFYYCRSIAVKFP-FPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC---HHHHHHHHHHHHSSSBC-CHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc---cHHHHHHHHHHHhcCCC-ChhHHHHHHHH
Confidence            556789999888999999999999999999999999999999999999   99999999999887663 77777777777


Q ss_pred             HHHHH
Q 027158          174 SSAIA  178 (227)
Q Consensus       174 ~~~~~  178 (227)
                      .....
T Consensus       230 f~~~~  234 (497)
T 1ya0_A          230 LSKAL  234 (497)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            76654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.11  E-value=0.0054  Score=50.08  Aligned_cols=79  Identities=14%  Similarity=0.067  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      .+..+|.+......+..|..+|.+|..+.|++...+..||.+....|+.-.|+.+|-+++......+.+..++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            3456777777777788888888888888888888888888888888888888888888887665566666666665543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.10  E-value=0.021  Score=45.24  Aligned_cols=107  Identities=15%  Similarity=-0.002  Sum_probs=73.0

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA-IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  113 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~  113 (227)
                      ...|+.+.|...+.+++.+.....-.  ...     ...+-.+ ...+++.      ...+...++..+...|++.+|+.
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~~a~~  192 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRASAVIA  192 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHH
Confidence            34588889999999999885432110  000     0111111 1111111      12345667788888899999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          114 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       114 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      .+..++..+|.+..++..+..+++..|+   ..+|+..|+++.+
T Consensus       193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~r~  233 (388)
T 2ff4_A          193 ELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence            9999999999998899999999999999   8888888888755

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.04  E-value=0.032  Score=41.43  Aligned_cols=118  Identities=14%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHH
Q 027158           34 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  113 (227)
Q Consensus        34 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~  113 (227)
                      ....|+.++|+......++.+|.+......+..+++-.|+++.|..-++.+.+++|.....-..+..+.       .|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~   79 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ   79 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence            455677888888888888888888888878888888888888888888888888887644322111110       1111


Q ss_pred             HHHHHHh--hC------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          114 CYEELIL--SQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       114 ~~~~al~--~~------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      .=.+++.  ..      |........-+......|+   .++|...-.++++..|.
T Consensus        80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~---~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCcc
Confidence            1111111  11      1112233334445556677   88888887777777653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.87  E-value=0.039  Score=43.64  Aligned_cols=97  Identities=14%  Similarity=-0.011  Sum_probs=61.2

Q ss_pred             HHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 027158           69 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA-AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  147 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  147 (227)
                      ...|+.+.|...+.+++.+....+-.  ...     ...|-.+ ...++...      ..+...++..+...|+   +.+
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~---~~~  189 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGR---ASA  189 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTC---HHH
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCC---HHH
Confidence            34578888888888888875432110  000     0111111 11111111      1234567888899999   999


Q ss_pred             HHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158          148 AKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       148 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (227)
                      |+..+..++..+|- +...+..+..++...++...
T Consensus       190 a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~  223 (388)
T 2ff4_A          190 VIAELEALTFEHPY-REPLWTQLITAYYLSDRQSD  223 (388)
T ss_dssp             HHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            99999999999995 77788788777777666443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.86  E-value=0.032  Score=49.34  Aligned_cols=98  Identities=7%  Similarity=-0.102  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLET----FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYA  133 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la  133 (227)
                      ..+..+...+++.|+.++|...|....+.    ..-+...|..+...|.+.|++++|..+|++..... ..|..++..+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            45777788888888888888888665432    23467788888888888888888888888887543 23566666677


Q ss_pred             HHHHHcCCCCcH-HHHHHHHHHHhhhc
Q 027158          134 DVLYTLGGVDNI-LLAKKYYASTIDLT  159 (227)
Q Consensus       134 ~~~~~~g~~~~~-~~A~~~~~~~~~~~  159 (227)
                      .++.+.|+   . ++|...|++..+..
T Consensus       208 ~glcK~G~---~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          208 QCMGRQDQ---DAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHTC---CHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCC---cHHHHHHHHHHHHHcC
Confidence            77777776   4 57778888877664

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.061  Score=37.37  Aligned_cols=99  Identities=15%  Similarity=-0.021  Sum_probs=69.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +.|+++.|.++.+.+     ++...|..+|......|+++-|..+|.++-.        +..+..+|...|+.+.-...-
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHH
Confidence            578899998887765     5678899999999999999999999988653        235556677778776655444


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  118 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  118 (227)
                      +.+.... +    +.....+++..|+++++++.|.+.
T Consensus        84 ~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           84 NIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            4443222 2    223345567788888888887554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.82  E-value=0.021  Score=49.15  Aligned_cols=108  Identities=15%  Similarity=-0.021  Sum_probs=82.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--------HHHcCCCHHHHHHHHHHH
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY--------LETFMADHDAWRELAEIY  102 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------l~~~p~~~~~~~~la~~~  102 (227)
                      .......|++++|.+..+     ..++...|..+|..+...|+++.|+.+|.++        +.....+.+.+..++...
T Consensus       659 f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH
Confidence            345577899999998753     3467889999999999999999999999985        233466777888889999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158          103 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus       103 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      ...|+++.|..+|.+.=     ++   -....+|...++   +++|...-++
T Consensus       734 ~~~~~~~~A~~~~~~~g-----~~---~~a~~~~~~~~~---~~~A~~lA~~  774 (814)
T 3mkq_A          734 ETTGKFNLAFNAYWIAG-----DI---QGAKDLLIKSQR---FSEAAFLGST  774 (814)
T ss_dssp             HHTTCHHHHHHHHHHHT-----CH---HHHHHHHHHTTC---HHHHHHHHHH
T ss_pred             HHcCchHHHHHHHHHcC-----CH---HHHHHHHHHcCC---hHHHHHHHHH
Confidence            99999999988875531     11   234466788888   8888887664

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.77  E-value=0.068  Score=36.84  Aligned_cols=98  Identities=15%  Similarity=0.033  Sum_probs=47.9

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--H-----------
Q 027158           21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE--T-----------   87 (227)
Q Consensus        21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~-----------   87 (227)
                      |..+.....++..+.-.|++..|+-++..     -+...+.+.-..|+....++..|+..++..++  .           
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            33334455555555555666555544322     22334444455555666666666666665551  1           


Q ss_pred             ----cCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           88 ----FMADHD-AWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        88 ----~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                          +|.+.+ .+..+|.++...|+-++|+.++.......|
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence                123322 233455555556666666666655554443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.65  E-value=0.13  Score=38.29  Aligned_cols=118  Identities=11%  Similarity=0.015  Sum_probs=83.9

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      +..|+.++|+..+...++..|.+......+...+.-.|+|+.|...++.+.+++|.....-..+-..       -.|...
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~~   80 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQA   80 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999865332111110       111112


Q ss_pred             HHHHHH-----HcCCCHHHHHH---HHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           81 LNKYLE-----TFMADHDAWRE---LAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        81 ~~~~l~-----~~p~~~~~~~~---la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      =.+++.     ..+..+..|..   -+......|+.++|...-.+++...|..
T Consensus        81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence            222221     12333444543   3555566799999999999999887754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.62  E-value=0.1  Score=46.20  Aligned_cols=97  Identities=9%  Similarity=-0.129  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCCHHHHHHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAE  100 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~  100 (227)
                      .+..+-..+...|+.++|..++...-+.    ..-+...|+.+...+++.|++++|...|++..+.. .-|...|..+..
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            4667778999999999999999776532    34478899999999999999999999999998753 336788888888


Q ss_pred             HHHHccc-HHHHHHHHHHHHhhC
Q 027158          101 IYVSLQM-YKQAAFCYEELILSQ  122 (227)
Q Consensus       101 ~~~~~~~-~~~A~~~~~~al~~~  122 (227)
                      ++.+.|+ .+.|..+|++.....
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcC
Confidence            9999998 578999999998654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.027  Score=45.20  Aligned_cols=101  Identities=12%  Similarity=-0.061  Sum_probs=78.6

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CH----H
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL---DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DH----D   93 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~----~   93 (227)
                      ...++..+|..+...|+++.|.+.|.++......   -.+.+.....++...+++..+...+.++-.....  ++    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            3457788999999999999999999998876432   2477788888899999999999999998766432  22    2


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      .....|.++...++|..|...|-.++....
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            444567777888999999999988876544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.0084  Score=48.85  Aligned_cols=123  Identities=12%  Similarity=0.018  Sum_probs=58.9

Q ss_pred             CCCCChHHHHHHHHHHHH--h---------CCCchhhHHHHHHHHHHcCCHHHHH----------HHHHHHHh-----cC
Q 027158            1 MDCQCLDVAKDCIKVLQK--Q---------FPESKRVGRLEGILLEAKGLWAEAE----------KAYSSLLE-----DN   54 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~--~---------~p~~~~~~~~~a~~~~~~~~~~~A~----------~~~~~~l~-----~~   54 (227)
                      +|.+++++|..+-..++.  .         ++=...+|+..+.++...|+.....          ..+-.+++     .+
T Consensus       147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D  226 (523)
T 4b4t_S          147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD  226 (523)
T ss_dssp             --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence            466788888777665541  1         2234567777777777777665421          12222222     23


Q ss_pred             CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           55 PL-DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        55 p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      +. ...+++.+-..|...+.++.|..+..+..  +|.+       ...++.+|.++.-+++|.+|..++..|+...|.+
T Consensus       227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            32 24667778889999999999999999984  6643       4467788999999999999999999999887754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.32  Score=39.21  Aligned_cols=152  Identities=18%  Similarity=0.163  Sum_probs=106.3

Q ss_pred             CChHHHHHHHHHHHHh------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------CCC
Q 027158            4 QCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---------------------NPL   56 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------~p~   56 (227)
                      |+++.|++.+..+-+.      .+....+...+..++...|+|+...+.+.-....                     .|.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            4567777766555432      1345666777778888888887764443322111                     121


Q ss_pred             C--------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CC-C----HHHHHHHHHHHHH
Q 027158           57 D--------------------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MA-D----HDAWRELAEIYVS  104 (227)
Q Consensus        57 ~--------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~-~----~~~~~~la~~~~~  104 (227)
                      .                          ..+...++.++...|++.+|...+.....-- .. +    .+.+.....+|..
T Consensus       110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~  189 (445)
T 4b4t_P          110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL  189 (445)
T ss_dssp             THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            1                          2344678999999999999999999976432 11 1    4577888899999


Q ss_pred             cccHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158          105 LQMYKQAAFCYEELIL---SQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDL  158 (227)
Q Consensus       105 ~~~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~  158 (227)
                      .++|..|...+.++..   ..+.++    ..+...|..+...++   |.+|..+|..+++.
T Consensus       190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~---y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKRE---YLEVAQYLQEIYQT  247 (445)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhc
Confidence            9999999999998742   233343    356777888888999   99999999999875

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.11  Score=41.69  Aligned_cols=100  Identities=12%  Similarity=-0.070  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCHH----H
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPL----Y  128 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~----~  128 (227)
                      ..++..+|..+...|+++.|.+.|.++.......   .+.+.....++...++|..+...+.++-....  .++.    .
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            4577899999999999999999999998865443   67888889999999999999999999875422  2222    3


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          129 HLAYADVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      ....|.++...++   |..|...|..++....
T Consensus       211 k~~~gl~~l~~r~---f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          211 KTYYGIHCLAVRN---FKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHGGGGTSC---HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCh---HHHHHHHHHHHhccCC
Confidence            4445566677788   9999999998876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.28  E-value=0.16  Score=43.74  Aligned_cols=106  Identities=20%  Similarity=0.159  Sum_probs=75.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc
Q 027158           28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  107 (227)
Q Consensus        28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~  107 (227)
                      ......+...|.++.|+...+        ++.   .........|++++|.+..+.     .+++..|..+|..+...++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~---~~f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQD---QKFELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHH---HHHHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccc---hheehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence            555667778899898886542        232   223456788999999998653     4788999999999999999


Q ss_pred             HHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 027158          108 YKQAAFCYEELIL--------SQPTVPLYHLAYADVLYTLGGVDNILLAKKYY  152 (227)
Q Consensus       108 ~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~  152 (227)
                      ++.|+.+|.++-.        ....+...+..++......|+   +..|...|
T Consensus       697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---~~~A~~~~  746 (814)
T 3mkq_A          697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK---FNLAFNAY  746 (814)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc---hHHHHHHH
Confidence            9999999998632        224556656666666655555   55555444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.12  E-value=0.29  Score=38.68  Aligned_cols=94  Identities=17%  Similarity=-0.001  Sum_probs=69.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc---CCCH----HHH
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF---MADH----DAW   95 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---p~~~----~~~   95 (227)
                      .+|..|+..|+|.+|...+.+.++...  ++    .+++.....+|...+++.++...+.++....   +.+|    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            578888888999999888888877421  12    2556666778888899999998888887653   2333    344


Q ss_pred             HHHHHHHH-HcccHHHHHHHHHHHHhhC
Q 027158           96 RELAEIYV-SLQMYKQAAFCYEELILSQ  122 (227)
Q Consensus        96 ~~la~~~~-~~~~~~~A~~~~~~al~~~  122 (227)
                      ..-|..++ ..++|..|..+|-+++...
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            56677888 7899999988888887543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.97  E-value=0.23  Score=45.00  Aligned_cols=125  Identities=11%  Similarity=0.003  Sum_probs=91.1

Q ss_pred             HHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--------------------CCCHHHHHHHHHHHHHcC
Q 027158           16 LQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---N--------------------PLDPVLHKRRVAIAKAQG   72 (227)
Q Consensus        16 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~--------------------p~~~~~~~~l~~~~~~~~   72 (227)
                      +....|.++...+.+|.++...|++++|..+|+++-.-   .                    ...+..|.....++...+
T Consensus       834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~  913 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES  913 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred             HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence            44456777778899999999999999999999887331   0                    112345667777888899


Q ss_pred             ChHHHHHHHHHHHHHcCCC-H----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           73 NFPTAIEWLNKYLETFMAD-H----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        73 ~~~~A~~~~~~~l~~~p~~-~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      .++.++++-+.+++..+.+ .    ..|..+-..+...|+|++|...+-..-. .......+..+-..++..|+
T Consensus       914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999876543 2    2688888999999999999777644321 12334556666666666665

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.76  E-value=0.55  Score=37.11  Aligned_cols=119  Identities=12%  Similarity=0.017  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--C----HHHHHHHHHHHHHc
Q 027158           38 GLWAEAEKAYSSLLEDNPLDPV------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--D----HDAWRELAEIYVSL  105 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~  105 (227)
                      +..+.-++.+..+++...+.-.      +-..+|..|...|++.+|...+.+.++.-..  +    .+.+..-..+|...
T Consensus        73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~  152 (394)
T 3txn_A           73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL  152 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence            4445555566666653222211      2347899999999999999999998875322  2    44667778889999


Q ss_pred             ccHHHHHHHHHHHHhhC---CCCHH----HHHHHHHHHH-HcCCCCcHHHHHHHHHHHhhhc
Q 027158          106 QMYKQAAFCYEELILSQ---PTVPL----YHLAYADVLY-TLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       106 ~~~~~A~~~~~~al~~~---p~~~~----~~~~la~~~~-~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      +++.++...+.++....   +.+|.    ....-|..+. ..++   |..|...|-+++..-
T Consensus       153 ~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rd---yk~A~~~F~eaf~~f  211 (394)
T 3txn_A          153 SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERD---FKTAFSYFYEAFEGF  211 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccC---HHHHHHHHHHHHhcc
Confidence            99999999999987543   23333    4455566677 7888   999999999997543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.34  Score=39.05  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=76.2

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH---HcCCCH---
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLE---TFMADH---   92 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~p~~~---   92 (227)
                      ++...++.++...|++.+|...+.......  ..+    ..++.....++...+++.+|...++++..   ..+..+   
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk  217 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK  217 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence            344678999999999999999999886532  122    36677788899999999999999999753   233343   


Q ss_pred             -HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           93 -DAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        93 -~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                       ..+...|.++...++|.+|-.+|..++..
T Consensus       218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence             35667788999999999999999999864

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.63  E-value=0.32  Score=33.55  Aligned_cols=116  Identities=15%  Similarity=0.043  Sum_probs=86.3

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  114 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~  114 (227)
                      .+-.+++.++-.-.-.....|   .....++.++.-.|.+..++-.+..     -+...+.+.-+.||....+|..|+.+
T Consensus        13 ~kY~dYdt~~fLsa~L~~~~~---eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~   84 (242)
T 3kae_A           13 IRYRDYETAIFLAACLLPCKP---EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS   84 (242)
T ss_dssp             HHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccHHHHHHHHHccCCh---HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677777654433333344   4445677888899999988877653     45677888889999999999999999


Q ss_pred             HHHHHh--h---------------CCCCHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          115 YEELIL--S---------------QPTVPL-YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       115 ~~~al~--~---------------~p~~~~-~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++..+.  .               +|.+.+ ....+|.++...|+   .++|+.+|.......|-
T Consensus        85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~---r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A           85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGY---REEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcC---HHHhhhHhhhhcCCccc
Confidence            999993  2               233433 56778999999999   99999999999998873

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.18  E-value=0.16  Score=41.50  Aligned_cols=126  Identities=10%  Similarity=-0.024  Sum_probs=59.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh--c---------CCCCHHHHHHHHHHHHHcCChHHH----------HHHHHHHHHH--
Q 027158           31 GILLEAKGLWAEAEKAYSSLLE--D---------NPLDPVLHKRRVAIAKAQGNFPTA----------IEWLNKYLET--   87 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~--~---------~p~~~~~~~~l~~~~~~~~~~~~A----------~~~~~~~l~~--   87 (227)
                      -..+...+++++|..+-...+.  .         ++-...+|+.++.++...|+....          ...+-.++..  
T Consensus       143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~  222 (523)
T 4b4t_S          143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS  222 (523)
T ss_dssp             ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence            3445567888988887766551  1         344456677777777777765542          2233333322  


Q ss_pred             ---cCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158           88 ---FMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus        88 ---~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                         ++. .+..+..+-..|...+.|++|..+..++.  .|.+       ..+++.+|.++...++   |.+|..++..++
T Consensus       223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~---Y~eA~~~L~~A~  297 (523)
T 4b4t_S          223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD---YSTANEYIIAAI  297 (523)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHT
T ss_pred             cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHH
Confidence               222 15577888889999999999999999985  4432       3567888999999999   999999999999


Q ss_pred             hhcCC
Q 027158          157 DLTGG  161 (227)
Q Consensus       157 ~~~~~  161 (227)
                      ...|.
T Consensus       298 rkap~  302 (523)
T 4b4t_S          298 RKAPH  302 (523)
T ss_dssp             SSCSC
T ss_pred             HhCCc
Confidence            98875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.55  E-value=0.74  Score=41.74  Aligned_cols=119  Identities=11%  Similarity=-0.113  Sum_probs=88.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------------------c
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------------------F   88 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------------------~   88 (227)
                      .+...+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++-.-                    .
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34455666677766554    34556778878899999999999999999999885210                    1


Q ss_pred             C---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CHH----HHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158           89 M---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPL----YHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus        89 p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~----~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      +   .-+..|..+..++...+.++.++++.+.|++..+. +..    .|.++=..+...|+   |++|...+..
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~~  963 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALMV  963 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHHh
Confidence            1   12456778888899999999999999999987653 332    56777778888999   9988776643

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.54  E-value=0.74  Score=38.72  Aligned_cols=124  Identities=10%  Similarity=-0.018  Sum_probs=83.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158           30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH----KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  105 (227)
Q Consensus        30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  105 (227)
                      .+.......+.+.|...+.......+-+....    ..++.-....+...++...+.+.....+++.. .-..+...+..
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~  298 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGT  298 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHC
Confidence            34445555788999999888765443333222    22222223334366788888886654443333 33333345577


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          106 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       106 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      |+++.|..+|+..-...+..+...+-+|.++...|+   .++|...|+++..
T Consensus       299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~---~~~a~~~~~~~a~  347 (618)
T 1qsa_A          299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ  347 (618)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC---HHHHHHHHHHHhc
Confidence            999999999987655444568888999999999999   9999999999876

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.99  E-value=3.2  Score=31.62  Aligned_cols=152  Identities=8%  Similarity=-0.016  Sum_probs=89.6

Q ss_pred             CCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHc
Q 027158            3 CQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQ   71 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~   71 (227)
                      .|+|=+|...++.+..++-      +...+++.-+..+...|++..|..+..-.++.     .|-+......+..++...
T Consensus        26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~  105 (312)
T 2wpv_A           26 AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL  105 (312)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred             ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            4677777777777766531      22234455566667778877776654444432     333445555566665553


Q ss_pred             CCh-HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHH----------------h---hCCC
Q 027158           72 GNF-PTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELI----------------L---SQPT  124 (227)
Q Consensus        72 ~~~-~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----------------~---~~p~  124 (227)
                      ... ..=..+.++++...       -.++..+..+|..|...|++.+|...|-..-                .   ..|.
T Consensus       106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~  185 (312)
T 2wpv_A          106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS  185 (312)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence            321 12345556665542       1478999999999999999999988763110                1   1222


Q ss_pred             CHHHHHHHHH-HHHHcCCCCcHHHHHHHHHHHhh
Q 027158          125 VPLYHLAYAD-VLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       125 ~~~~~~~la~-~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ....+...|. .|...|+   ...|...|....+
T Consensus       186 e~dlf~~RaVL~yL~l~n---~~~A~~~~~~f~~  216 (312)
T 2wpv_A          186 TVAEFFSRLVFNYLFISN---ISFAHESKDIFLE  216 (312)
T ss_dssp             HHHHHHHHHHHHHHHTTB---HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence            2333333333 3556778   8888887776553

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.19  E-value=3  Score=37.06  Aligned_cols=107  Identities=10%  Similarity=-0.121  Sum_probs=75.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--------------------HH
Q 027158           28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL--------------------ET   87 (227)
Q Consensus        28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--------------------~~   87 (227)
                      ..+...+...|.++-|.    ..+...|.++..-+.+|.++...|++++|..+|+++-                    ..
T Consensus       814 ~~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~  889 (950)
T 4gq2_M          814 TELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  889 (950)
T ss_dssp             HHHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence            33555666677776553    4566777788777889999999999999999998742                    11


Q ss_pred             -cCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHH----HHHHHHHHHHH
Q 027158           88 -FMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPL----YHLAYADVLYT  138 (227)
Q Consensus        88 -~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~----~~~~la~~~~~  138 (227)
                       .+.  ....|.....++...+.++-++.+.+.|++.- ++++.    .|..+=.+...
T Consensus       890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a  948 (950)
T 4gq2_M          890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA  948 (950)
T ss_dssp             TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence             112  24578889999999999999999999999754 45554    44444444433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.98  E-value=5.4  Score=30.69  Aligned_cols=151  Identities=9%  Similarity=0.034  Sum_probs=82.8

Q ss_pred             CCCh---HHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q 027158            3 CQCL---DVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIA   68 (227)
Q Consensus         3 ~~~~---~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~   68 (227)
                      .|+|   =+|-..++.+..++-      +...+++.-+..+...|++..|..+..-.++.     .|-+......+..++
T Consensus        25 ~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~  104 (336)
T 3lpz_A           25 EGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL  104 (336)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            4566   566666666655431      22233444556666667766666555433332     233345555566665


Q ss_pred             HHcCCh-HHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHcccHHHHHHHHHH-------HH---------hhCCC
Q 027158           69 KAQGNF-PTAIEWLNKYLET-------FMADHDAWRELAEIYVSLQMYKQAAFCYEE-------LI---------LSQPT  124 (227)
Q Consensus        69 ~~~~~~-~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-------al---------~~~p~  124 (227)
                      .....- ..=..+.++++..       .-.++..+..+|..|...+++.+|...|--       .+         ...|.
T Consensus       105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~  184 (336)
T 3lpz_A          105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH  184 (336)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred             HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence            554431 1223344444443       124688999999999999999999777621       00         11223


Q ss_pred             CHHHHHHHHH-HHHHcCCCCcHHHHHHHHHHHh
Q 027158          125 VPLYHLAYAD-VLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus       125 ~~~~~~~la~-~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      ....+...|. .|...++   ...|...+....
T Consensus       185 e~dlfiaRaVL~yL~l~n---~~~A~~~~~~f~  214 (336)
T 3lpz_A          185 TAPLYCARAVLPYLLVAN---VRAANTAYRIFT  214 (336)
T ss_dssp             GHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence            3333344443 3566777   888877555444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.07  E-value=12  Score=33.33  Aligned_cols=90  Identities=14%  Similarity=0.089  Sum_probs=70.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh---------------------h
Q 027158           63 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL---------------------S  121 (227)
Q Consensus        63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------------~  121 (227)
                      .+...+...|.++-+.    ..+..-|.++..-+.+|.++...|++++|..+|++|-.                     .
T Consensus       815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~  890 (950)
T 4gq2_M          815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  890 (950)
T ss_dssp             HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred             HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence            3566667788777554    35567788888889999999999999999999986541                     0


Q ss_pred             CCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158          122 QPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  159 (227)
Q Consensus       122 ~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~  159 (227)
                      .+..  ..++..+..++...+-   ++-++...+.|++.-
T Consensus       891 e~~~~~~~YY~hV~~LFE~~~a---~~~vi~fA~lAI~~~  927 (950)
T 4gq2_M          891 HHQNLLSCYYLHLSKKLFEESA---YIDALEFSLLADASK  927 (950)
T ss_dssp             TTCSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTC
T ss_pred             cccchhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhc
Confidence            1222  3478899999999999   999999999999754

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=85.11  E-value=6.5  Score=26.17  Aligned_cols=52  Identities=13%  Similarity=-0.041  Sum_probs=23.9

Q ss_pred             HHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158           69 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  120 (227)
Q Consensus        69 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  120 (227)
                      ..+|+-++-...+...+.-.|-++.....+|.+|.+.|+..+|-+++.+|-+
T Consensus       102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A          102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            3444444444444444333444455555555555555555555555544443

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.66  E-value=4.5  Score=23.40  Aligned_cols=32  Identities=13%  Similarity=-0.005  Sum_probs=22.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 027158           28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV   59 (227)
Q Consensus        28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~   59 (227)
                      ..+|..+...|++++|..+|-+|+..+|.-..
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            44677777777788888877788777766443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.65  E-value=19  Score=30.34  Aligned_cols=140  Identities=9%  Similarity=-0.068  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027158            6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL   85 (227)
Q Consensus         6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l   85 (227)
                      ..++...+.+.....+++.. ...++...+..|++..|..++.++-...+......+-+|..+...|+.++|..+|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             CHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            44555555554443333322 22333344556888888888877655444556667777888888888888888888765


Q ss_pred             HHc-----------------C---C---C-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           86 ETF-----------------M---A---D-----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        86 ~~~-----------------p---~---~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      .-.                 |   .   .     ...-...+..+...|....|...+..++...  ++.-...++.+..
T Consensus       347 ~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~  424 (618)
T 1qsa_A          347 QQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAF  424 (618)
T ss_dssp             TSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence            310                 0   0   0     0012344556667777777777777666432  2344455666666


Q ss_pred             HcCCCCcHHHHHHH
Q 027158          138 TLGGVDNILLAKKY  151 (227)
Q Consensus       138 ~~g~~~~~~~A~~~  151 (227)
                      ..|.   +..++..
T Consensus       425 ~~~~---~~~~v~~  435 (618)
T 1qsa_A          425 NNQW---WDLSVQA  435 (618)
T ss_dssp             HTTC---HHHHHHH
T ss_pred             HCCC---hHHHHHH
Confidence            6666   6655543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=83.29  E-value=13  Score=28.26  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=24.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158          124 TVPLYHLAYADVLYTLGGVDNILLAKKYYA  153 (227)
Q Consensus       124 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  153 (227)
                      .++..+..+|..++..|+   +.+|..+|-
T Consensus       132 Gdp~LH~~~a~~~~~e~~---~~~A~~H~i  158 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDF---VYEAERYFM  158 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCC---HHHHHHHHH
Confidence            578999999999999999   999999885

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=83.16  E-value=3.6  Score=29.17  Aligned_cols=53  Identities=15%  Similarity=0.028  Sum_probs=39.0

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHcCChHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL-----HKRRVAIAKAQGNFPT   76 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~~l~~~~~~~~~~~~   76 (227)
                      ....+.+|.+++..++|.+|.+.+..|+...|.+...     +..+.-+.+-.|+...
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~   71 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT   71 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3567889999999999999999999999998876432     3333344455677553

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=82.98  E-value=5  Score=23.21  Aligned_cols=29  Identities=14%  Similarity=0.063  Sum_probs=15.6

Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158           97 ELAEIYVSLQMYKQAAFCYEELILSQPTV  125 (227)
Q Consensus        97 ~la~~~~~~~~~~~A~~~~~~al~~~p~~  125 (227)
                      .+|..+...|++++|...|-+|+...|+-
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP   50 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP   50 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence            44555555555555555555555555543

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=80.88  E-value=3.7  Score=24.88  Aligned_cols=28  Identities=14%  Similarity=0.184  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           92 HDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        92 ~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      +..+...+..+...|+|++|+++.+++.
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            3455667777777788888877766654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=80.25  E-value=3.8  Score=24.38  Aligned_cols=16  Identities=19%  Similarity=0.115  Sum_probs=7.8

Q ss_pred             HcccHHHHHHHHHHHH
Q 027158          104 SLQMYKQAAFCYEELI  119 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al  119 (227)
                      ..|+|++|+.+|..++
T Consensus        31 ~~g~y~eAl~lY~~ai   46 (83)
T 2w2u_A           31 KEGNAEEAITNYKKAI   46 (83)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHH
Confidence            3455555555544444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	9e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.002
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 9e-11
 Identities = 31/153 (20%), Positives = 46/153 (30%), Gaps = 3/153 (1%)

Query: 6   LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 65
            D A           P    V      +   +GL   A   Y   +E  P  P  +    
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 66  AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 125
              K +G+   A +  N  L       D+   LA I       ++A   Y + +   P  
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 126 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158
              H   A VL   G +     A  +Y   I +
Sbjct: 339 AAAHSNLASVLQQQGKLQE---ALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 6e-10
 Identities = 33/135 (24%), Positives = 49/135 (36%)

Query: 6   LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 65
           +D+A D  +   +  P            L+ KG  AEAE  Y++ L   P          
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 66  AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 125
            I + QGN   A+    K LE F     A   LA +       ++A   Y+E I   PT 
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

Query: 126 PLYHLAYADVLYTLG 140
              +    + L  + 
Sbjct: 373 ADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 3/158 (1%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
                + +A    +      P         G +L+   ++  A  AY   L  +P   V+
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           H     +   QG    AI+   + +E      DA+  LA          +A  CY   + 
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

Query: 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158
             PT        A++    G ++    A + Y   +++
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEE---AVRLYRKALEV 334

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 8e-09
 Identities = 26/140 (18%), Positives = 41/140 (29%)

Query: 1   MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 60
                L+ AK C     +  P         G +  A+G    A   +   +  +P     
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205

Query: 61  HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120
           +     + K    F  A+    + L            LA +Y    +   A   Y   I 
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

Query: 121 SQPTVPLYHLAYADVLYTLG 140
            QP  P  +   A+ L   G
Sbjct: 266 LQPHFPDAYCNLANALKEKG 285

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 11/85 (12%), Positives = 25/85 (29%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
                  G +  AE+    L    P +  +     +I         +  +    ++    
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCY 115
             +A+  L  +Y      ++A   Y
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHY 90

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 9/67 (13%), Positives = 20/67 (29%)

Query: 71  QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130
            G+F  A     +       +      L+ I+   +   ++A      I   P +   + 
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71

Query: 131 AYADVLY 137
              +V  
Sbjct: 72  NLGNVYK 78

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 1/109 (0%)

Query: 36  AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 95
           ++G   +A +     ++ +P D  L    + +    G+F  A E L + ++ F       
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 96  RELAEIYVSLQMYKQAAFCY-EELILSQPTVPLYHLAYADVLYTLGGVD 143
            +L  +  + Q  K  A       +L +       L   ++       +
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE 116

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 10/86 (11%), Positives = 24/86 (27%)

Query: 68  AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 127
           A ++G    A+E L + ++    D        E+      +++A     + I   P    
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 128 YHLAYADVLYTLGGVDNILLAKKYYA 153
                  ++       +         
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAK 91

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (92), Expect = 9e-05
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 8/130 (6%)

Query: 28  RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 87
           + +G  L     + EA   Y   +  NPL  V +  R            A+    + LE 
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67

Query: 88  FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 147
                 A   L +  + ++ Y +A    +             L + D + +      + +
Sbjct: 68  DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE---QRLNFGDDIPS-----ALRI 119

Query: 148 AKKYYASTID 157
           AKK   ++I+
Sbjct: 120 AKKKRWNSIE 129

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 16/108 (14%), Positives = 33/108 (30%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           EG+    +G    A   + + ++ +P      +              AI  L + LE   
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 137
            +  A   LA  + +  + +QA     + +   P          +   
Sbjct: 85  DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 132

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 9/179 (5%)

Query: 31  GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90
           G +   +   ++AE  Y    +  P +   + +   +A ++G+  T I +  + +     
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 91  DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL-LAK 149
              A   L +           +    +            + +   +Y    ++ +  L +
Sbjct: 219 FPAASTNLQKAL----SKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLRE 274

Query: 150 KYYASTIDLTGGKNTKALFGICLCSSAIAQL----TKGRNKEDKESPELQSLAAAALEK 204
           K      +L   K   +   + +    + QL          E     + + L    L  
Sbjct: 275 KLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLA 333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 30  EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89
           EG+L   K  W  A  A+S++ + +     +      +     N   A +   + +    
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 90  ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 139
               A+ +   +Y   + Y  A    +E ++      L       + + L
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.79
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.78
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.77
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.76
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.75
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.74
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.73
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.71
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.66
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.65
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.63
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.58
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.51
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.43
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.43
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.39
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.35
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.32
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.01
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.76
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.75
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.72
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.69
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.62
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.45
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.06
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.43
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	87.7
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.71
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	86.4
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	81.07
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	80.76

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.8e-25  Score=170.04  Aligned_cols=178  Identities=15%  Similarity=0.077  Sum_probs=164.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|.++++.+|++..++..+|.++...|++++|+..+
T Consensus        31 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  110 (323)
T d1fcha_          31 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL  110 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccch
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHcC-------------------------------------------------C--CHHHHHHHHHHHHHcccHHH
Q 027158           82 NKYLETFM-------------------------------------------------A--DHDAWRELAEIYVSLQMYKQ  110 (227)
Q Consensus        82 ~~~l~~~p-------------------------------------------------~--~~~~~~~la~~~~~~~~~~~  110 (227)
                      ++++..+|                                                 .  ++.++..+|.++...|++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  190 (323)
T d1fcha_         111 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK  190 (323)
T ss_dssp             HHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhh
Confidence            77665443                                                 3  34567889999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158          111 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  183 (227)
Q Consensus       111 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (227)
                      |+.+|++++..+|+++.++..+|.++...|+   +++|+..|+++++++|+ ++.+++.++.++..++++.++
T Consensus       191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         191 AVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhcccccccccccccccchhhhhhccccccc---chhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999999   99999999999999996 999999999999999876543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-25  Score=172.06  Aligned_cols=176  Identities=18%  Similarity=0.115  Sum_probs=103.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      .|++++|...+++++..+|+++.++..+|.++...|++++|+..+.++...+|.....+..+|.++...|++++|+..|+
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  261 (388)
T d1w3ba_         182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45555666666666666666555555566666555666666666555555555555555555555555556666666666


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158           83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  162 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~  162 (227)
                      ++++.+|+++.++..+|.++...|++++|+..++.++...|.+...+..+|.++...|+   +++|+..|+++++++|+ 
T Consensus       262 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~-  337 (388)
T d1w3ba_         262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPE-  337 (388)
T ss_dssp             HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHTTSCTT-
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-
Confidence            65555555555555555555555555555555555555555555555555555555555   55555555555555553 


Q ss_pred             chhHHHhHHHHHHHHHhhhc
Q 027158          163 NTKALFGICLCSSAIAQLTK  182 (227)
Q Consensus       163 ~~~~~~~l~~~~~~~~~~~~  182 (227)
                      ++.+++.++.++...+++.+
T Consensus       338 ~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         338 FAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCCHH
T ss_pred             CHHHHHHHHHHHHHcCCHHH
Confidence            55555555555555554443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-24  Score=164.77  Aligned_cols=172  Identities=12%  Similarity=0.069  Sum_probs=160.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      .+.+++|+.++++++..+|++..+|..+|.++...| ++++|+..+++++..+|++..+|..+|.++...|++++|+..+
T Consensus        56 ~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~  135 (315)
T d2h6fa1          56 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI  135 (315)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHH
Confidence            468899999999999999999999999999999987 5999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhhh
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV---DNILLAKKYYASTIDL  158 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~~~~A~~~~~~~~~~  158 (227)
                      +++++++|.+..+|.++|.++...|++++|+.+|+++++++|.+..+|.++|.++...|..   +.+++|+..+.+++++
T Consensus       136 ~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~  215 (315)
T d2h6fa1         136 ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL  215 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999988762   2368999999999999


Q ss_pred             cCCCchhHHHhHHHHHH
Q 027158          159 TGGKNTKALFGICLCSS  175 (227)
Q Consensus       159 ~~~~~~~~~~~l~~~~~  175 (227)
                      +|+ +..++..++.++.
T Consensus       216 ~P~-~~~~~~~l~~ll~  231 (315)
T d2h6fa1         216 VPH-NESAWNYLKGILQ  231 (315)
T ss_dssp             STT-CHHHHHHHHHHHT
T ss_pred             CCC-chHHHHHHHHHHH
Confidence            996 8877776665543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-23  Score=161.76  Aligned_cols=173  Identities=18%  Similarity=0.124  Sum_probs=163.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      ..|++++|+..+++.....|..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+
T Consensus       215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  294 (388)
T d1w3ba_         215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +.++...|.++..+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+   +++|+..|+++++++|+
T Consensus       295 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTT
T ss_pred             HhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999999999   99999999999999996


Q ss_pred             CchhHHHhHHHHHHHHH
Q 027158          162 KNTKALFGICLCSSAIA  178 (227)
Q Consensus       162 ~~~~~~~~l~~~~~~~~  178 (227)
                       ++.++.+++.++..++
T Consensus       372 -~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         372 -FADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             -CHHHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHHHHcC
Confidence             8889999998887654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.8e-22  Score=149.19  Aligned_cols=155  Identities=17%  Similarity=0.096  Sum_probs=126.0

Q ss_pred             CChHHHHHHHHHHHHhCC----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE   79 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~   79 (227)
                      .+.+.|+..+++++...+    ....+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            355677777777776543    3456788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH--------------------------------
Q 027158           80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL--------------------------------  127 (227)
Q Consensus        80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------------------------  127 (227)
                      .|+++++++|+++.++..+|.++...|++++|+..|+++++.+|.+..                                
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            888888888888888888888888888888888888888888887654                                


Q ss_pred             --------------------------------------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          128 --------------------------------------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       128 --------------------------------------~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                                                            +++.+|.++...|+   +++|+.+|++++..+|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         173 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH  241 (259)
T ss_dssp             THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCC
Confidence                                                  56667888888888   88888888888888885

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.1e-23  Score=157.54  Aligned_cols=161  Identities=13%  Similarity=0.129  Sum_probs=147.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------------------
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------------------------   56 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------------------------   56 (227)
                      ..|++++|+..+.+++..+|+++..+..+|.++...|++++|+..+++++...|.                         
T Consensus        65 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (323)
T d1fcha_          65 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG  144 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred             HcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHH
Confidence            4689999999999999999999999999999999999999999888887665443                         


Q ss_pred             --------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158           57 --------------------------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  110 (227)
Q Consensus        57 --------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~  110 (227)
                                                ++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++
T Consensus       145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  224 (323)
T d1fcha_         145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  224 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchh
Confidence                                      245677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158          111 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus       111 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                      |+.+|+++++.+|+++.++..+|.++...|+   +++|+..|+++++++|+ +...
T Consensus       225 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~~  276 (323)
T d1fcha_         225 AVAAYRRALELQPGYIRSRYNLGISCINLGA---HREAVEHFLEALNMQRK-SRGP  276 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHT-C---
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCc-Chhh
Confidence            9999999999999999999999999999999   99999999999999996 4443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8e-22  Score=151.26  Aligned_cols=156  Identities=10%  Similarity=-0.013  Sum_probs=146.6

Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHcCCCHHHHHHH
Q 027158           20 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLETFMADHDAWREL   98 (227)
Q Consensus        20 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l   98 (227)
                      .|+...++..+|.++...+.+++|+..++++++++|++..+|..+|.++...|. +++|+.+++++++.+|++..+|..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            455667888899999999999999999999999999999999999999999874 8999999999999999999999999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158           99 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus        99 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      |.++...|++++|+.++++++..+|.+..+|..+|.++...|+   +++|+..|+++++++|. +..+|..++.+...++
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~---~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~  194 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTT  194 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999999   99999999999999996 8889998888876654


Q ss_pred             h
Q 027158          179 Q  179 (227)
Q Consensus       179 ~  179 (227)
                      .
T Consensus       195 ~  195 (315)
T d2h6fa1         195 G  195 (315)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-20  Score=121.81  Aligned_cols=110  Identities=19%  Similarity=0.161  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      +...|..++..|++++|+..|.++++.+|+++.+|..+|.++...|++++|+..+.++++++|.++.+|+.+|.++...|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            34567777777888888888888887788777777777887777788888888888888778877777778888887788


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158          107 MYKQAAFCYEELILSQPTVPLYHLAYADVL  136 (227)
Q Consensus       107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~  136 (227)
                      ++++|+.+|+++++.+|+++.++..++.+.
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            888888888888877777777777776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.3e-19  Score=124.03  Aligned_cols=125  Identities=14%  Similarity=0.048  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  105 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  105 (227)
                      .+...|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.+|..+|.++...
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            35567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 027158          106 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY  151 (227)
Q Consensus       106 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~  151 (227)
                      |++++|+.+|++++.++|+++.++..++.+....+. ..+.+|+..
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~~~~~a~~~  136 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-KAFERAIAG  136 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHHHHHhC
Confidence            999999999999999999999998888777543322 015555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.9e-19  Score=117.95  Aligned_cols=110  Identities=16%  Similarity=0.068  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      +...|..++..|++++|+..|.++++.+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHH
Q 027158          141 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  174 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (227)
                      +   +++|+..|+++++++|+ ++.++.++..+.
T Consensus        86 ~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~l~  115 (117)
T d1elwa_          86 R---FEEAKRTYEEGLKHEAN-NPQLKEGLQNME  115 (117)
T ss_dssp             C---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHh
Confidence            9   99999999999999996 888887776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-18  Score=124.26  Aligned_cols=129  Identities=14%  Similarity=0.033  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      ++..|..+...|+|+.|+..|.++   .|.++.+|+++|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            346799999999999999999864   55678999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          107 MYKQAAFCYEELILSQPTV----------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       107 ~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++++|+..|++++...|.+                ..+++++|.++..+|+   +++|...+.+++.+.|.
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~---~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE  152 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence            9999999999999875543                3678999999999999   99999999999999885

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.5e-18  Score=128.76  Aligned_cols=137  Identities=13%  Similarity=0.030  Sum_probs=121.7

Q ss_pred             CCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHH
Q 027158           38 GLWAEAEKAYSSLLEDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  113 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~  113 (227)
                      .+.+.|+..+++++...+    ....+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345677778888887543    3457899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158          114 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       114 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      +|++++.++|+++.++..+|.++..+|+   +++|+..|+++++.+|. +......+.++...+.
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhh---HHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999   99999999999999996 6666666666555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.4e-19  Score=128.21  Aligned_cols=118  Identities=16%  Similarity=0.049  Sum_probs=99.8

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  102 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  102 (227)
                      +...+...|..++..|+|++|+..|++++..+|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158          103 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus       103 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  140 (227)
                      ..+|++++|+.+|++++.++|++...+...+..+...+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~  120 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  120 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999888765544333333333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.2e-18  Score=118.94  Aligned_cols=116  Identities=13%  Similarity=0.057  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158           59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      ..+...|..++..|++++|+.+|+++++++|+++.+|.++|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158          139 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  178 (227)
Q Consensus       139 ~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (227)
                      +|+   +++|+..|++++.++|+ +..++..+..+...+.
T Consensus        91 ~g~---~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          91 LGK---FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVK  126 (159)
T ss_dssp             TTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred             cCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence            999   99999999999999996 8888777766655444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.2e-18  Score=124.45  Aligned_cols=102  Identities=11%  Similarity=-0.025  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158           57 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  136 (227)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  136 (227)
                      +...+...|..++..|++++|+..|++++.++|.++.+|.++|.+|...|++++|+.+|++++.++|+++.+|+++|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          137 YTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ..+|+   +++|+..|+++++++|+
T Consensus        83 ~~l~~---~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          83 LEMES---YDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHCCC---HHHHHHHHHHHHHhCcc
Confidence            99999   99999999999999885

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.9e-18  Score=120.34  Aligned_cols=141  Identities=16%  Similarity=0.048  Sum_probs=121.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +.|+|++|+..|.++   .|.++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|
T Consensus        17 ~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~   93 (192)
T d1hh8a_          17 DKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL   93 (192)
T ss_dssp             HTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHH
Confidence            468999999999864   56678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCC----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 027158           82 NKYLETFMAD----------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  145 (227)
Q Consensus        82 ~~~l~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  145 (227)
                      ++++...|.+                ..+++++|.++...|++++|+..+++++...|..            ..+.   .
T Consensus        94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~------------~~~~---~  158 (192)
T d1hh8a_          94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSK---I  158 (192)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG------------GGGH---H
T ss_pred             HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------------chHH---H
Confidence            9999876543                4678999999999999999999999999999874            2233   5


Q ss_pred             HHHHHHHHHHhhhcC
Q 027158          146 LLAKKYYASTIDLTG  160 (227)
Q Consensus       146 ~~A~~~~~~~~~~~~  160 (227)
                      +.|+..+.+.....|
T Consensus       159 ~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         159 DKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHhhhhCCc
Confidence            566666655555555

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=6.8e-18  Score=129.99  Aligned_cols=168  Identities=13%  Similarity=0.053  Sum_probs=128.6

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHcCChHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL--WAEAEKAYSSLLEDNPLDPVLHK-RRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~-~l~~~~~~~~~~~~A~~~   80 (227)
                      |++++|+.++++++..+|+++.++..+|.++...++  +++|+..+.+++..+|.+..++. ..|.++...+.+++|+..
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH
Confidence            446778888888888888888888888877777654  78888888888888888777754 566777778888888888


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHc-------------------------------------------------------
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSL-------------------------------------------------------  105 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~-------------------------------------------------------  105 (227)
                      +++++..+|.+..+|..+|.++...                                                       
T Consensus       167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~  246 (334)
T d1dcea1         167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCE  246 (334)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHH
Confidence            8888888888888888777776654                                                       


Q ss_pred             ---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHH
Q 027158          106 ---------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  175 (227)
Q Consensus       106 ---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (227)
                               |++.+|+..+.+++..+|.+..++..+|.++...|+   +++|+.+|+++++++|. ....|..+..+..
T Consensus       247 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~  321 (334)
T d1dcea1         247 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPM-RAAYLDDLRSKFL  321 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence                     455566666666666777777788888888888888   88888888888888885 6666666644443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.5e-17  Score=114.04  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=98.3

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM   89 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p   89 (227)
                      ..+...|..++..|++++|+..|.+++...|..               ..++.++|.+|...|++++|+..+++++.++|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            445678999999999999999999999987654               24566788888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      +++.+++.+|.++...|++++|+.+|++++.++|+++.+...++.+....+.
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888776665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.75  E-value=1.5e-17  Score=107.80  Aligned_cols=95  Identities=16%  Similarity=-0.012  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  104 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  104 (227)
                      ...+..|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.+|..+|.+|..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34466777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccHHHHHHHHHHHH
Q 027158          105 LQMYKQAAFCYEELI  119 (227)
Q Consensus       105 ~~~~~~A~~~~~~al  119 (227)
                      .|++++|++++++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            777777777777764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=7e-17  Score=124.23  Aligned_cols=137  Identities=12%  Similarity=0.005  Sum_probs=124.7

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-   73 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-   73 (227)
                      ..++|+.++++++..+|++..+|..++.++...          |.+++|+.+++++++.+|.++.+|..+|.++...++ 
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            348999999999999999999998887776554          458899999999999999999999999999888765 


Q ss_pred             -hHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           74 -FPTAIEWLNKYLETFMADHDAWR-ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        74 -~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                       +++|+..++++++.+|.+..+|. ..|.++...+.+++|+.++++++..+|.+..+|..+|.++..+|+
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence             78999999999999999998875 677888899999999999999999999999999999999999887

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.73  E-value=4e-17  Score=105.79  Aligned_cols=94  Identities=13%  Similarity=-0.030  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  139 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  139 (227)
                      .++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHh
Q 027158          140 GGVDNILLAKKYYASTI  156 (227)
Q Consensus       140 g~~~~~~~A~~~~~~~~  156 (227)
                      |+   +++|+..+++.+
T Consensus        98 g~---~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HN---ANAALASLRAWL  111 (112)
T ss_dssp             HH---HHHHHHHHHHHH
T ss_pred             CC---HHHHHHHHHHHh
Confidence            99   999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.1e-16  Score=109.17  Aligned_cols=118  Identities=14%  Similarity=0.152  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ  122 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  122 (227)
                      ...+...|..++..|++++|+..|++++...|..               ..++.++|.+|+..|+|++|+.++++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            4556789999999999999999999999998764               2467889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          123 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       123 p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      |+++.+++.+|.++..+|+   +++|+..|+++++++|+ +..+...+..+...+..
T Consensus        93 p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVND---FELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhh---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            9999999999999999999   99999999999999996 88888888888777765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.72  E-value=3.5e-16  Score=108.68  Aligned_cols=131  Identities=12%  Similarity=0.082  Sum_probs=103.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158           25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM   89 (227)
Q Consensus        25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p   89 (227)
                      ..+...|..++..|+|.+|+..|.+++...|..               ..++.++|.|+..+|++++|+..+++++.++|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            456678999999999999999999999764332               24566788888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhhh
Q 027158           90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL-LAKKYYASTIDL  158 (227)
Q Consensus        90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~-~A~~~~~~~~~~  158 (227)
                      .++.+++.+|.++...|++++|+.+|++++.++|+++.+...++.+....+.   .. .....|.+.++.
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~---~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE---HNERDRRTYANMFKK  162 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhh
Confidence            8888888888888888888888888888888888888888888888776665   43 334444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=1.8e-16  Score=108.47  Aligned_cols=132  Identities=15%  Similarity=-0.009  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  105 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  105 (227)
                      .+...|..++..|+|.+|+..|.+++...|.....             .+.........+     ...++.++|.+|+.+
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~~~~~~~-----~~~~~~Nla~~~~~l   80 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------DDQILLDKKKNI-----EISCNLNLATCYNKN   80 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHHHHHHHH-----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHHHhhhhH-----HHHHHhhHHHHHHHh
Confidence            34567888889999999999999998875533210             000011111111     123566777777777


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          106 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       106 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      |++++|+..+++++.++|.+..+++.+|.++..+|+   +++|+..|+++++++|+ +..+...+..+..++.+
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~---~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777   77777777777777774 77677777777766655

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.71  E-value=5.4e-16  Score=106.04  Aligned_cols=78  Identities=13%  Similarity=0.067  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  137 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  137 (227)
                      ++.++|.++..+|++++|+..++++++++|.+..+|+.+|.++...|++++|+.+|++++.++|++..+...++.+..
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555555555555555555555555555555555544433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.2e-16  Score=111.23  Aligned_cols=133  Identities=11%  Similarity=-0.052  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158           27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  106 (227)
Q Consensus        27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~  106 (227)
                      ....|..++..|++.+|+..|.+++...+..                  .+..........+|....++.++|.++...|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence            3567888889999999999999988642211                  1111222333456667778888888888888


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158          107 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  181 (227)
Q Consensus       107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (227)
                      +|++|+..|+++++++|+++.+++.+|.++..+|+   +++|+..|+++++++|+ +..+...+..+...+....
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~---~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888   88888888888888885 7777777777777766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=6.4e-17  Score=109.66  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           34 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ----------GNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        34 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      +.+.+.+++|+..|+++++.+|+++.++..+|.++...          +.+++|+..|+++++++|+++.+|+++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34556677788888888888888888887777777643          34567888888888888888888888888887


Q ss_pred             Hccc-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158          104 SLQM-----------YKQAAFCYEELILSQPTVPLYHLAYADVLYT  138 (227)
Q Consensus       104 ~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  138 (227)
                      ..|+           |++|+.+|++++.++|++..++..++.+...
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            7653           6778888888888888887777777765433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-16  Score=104.50  Aligned_cols=109  Identities=16%  Similarity=-0.025  Sum_probs=56.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q 027158           64 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYT  138 (227)
Q Consensus        64 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~  138 (227)
                      ++..+...+++++|.+.|++++..+|.++.+++++|.++..   .+++++|+..|++++..+|.+  ..+++++|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555543   233444555555555555433  2345555555555


Q ss_pred             cCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          139 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       139 ~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      +|+   +++|+.+|+++++++|+ +..+......+..+
T Consensus        85 ~g~---~~~A~~~~~~aL~~~P~-~~~A~~l~~~I~~~  118 (122)
T d1nzna_          85 LKE---YEKALKYVRGLLQTEPQ-NNQAKELERLIDKA  118 (122)
T ss_dssp             TTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             Hhh---hHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence            555   55555555555555553 44444444433333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.5e-17  Score=105.83  Aligned_cols=111  Identities=14%  Similarity=-0.036  Sum_probs=97.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHcCCC--HHHHHHHHHHHH
Q 027158           29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMAD--HDAWRELAEIYV  103 (227)
Q Consensus        29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~  103 (227)
                      .++..+...+++++|.+.|++++..+|.++.+++++|.++...+   ++++|+..|++++..+|.+  ..+|+++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999998754   4567999999999988765  458999999999


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 027158          104 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  139 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  139 (227)
                      ..|++++|+.+|+++++++|++..+...++.+....
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888776543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.9e-16  Score=102.61  Aligned_cols=97  Identities=14%  Similarity=0.050  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH-------HHHHHH
Q 027158           61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL-------YHLAYA  133 (227)
Q Consensus        61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la  133 (227)
                      +..+|..++..|++++|+.+|.++++++|+++.++.++|.+|..+|+|++|+..|++++.++|.++.       ++..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            4455666666666666666666666666666666666666666666666666666666655554432       344556


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158          134 DVLYTLGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       134 ~~~~~~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      .++..+++   +++|+.+|++++...|
T Consensus        87 ~~~~~~~~---~~~A~~~~~kal~~~~  110 (128)
T d1elra_          87 NSYFKEEK---YKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCC---HHHHHHHHHHHHhcCC
Confidence            66666666   7777777777776665

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.8e-16  Score=102.04  Aligned_cols=106  Identities=19%  Similarity=0.203  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH-------HHHHH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-------AWREL   98 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l   98 (227)
                      .+..+|..++..|+|++|+.+|.+++..+|+++.++..+|.++...|++++|+..++++++++|.++.       ++..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999988754       66778


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 027158           99 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  132 (227)
Q Consensus        99 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  132 (227)
                      |.++...+++++|+.+|++++..+|+ +.....+
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            88888889999999999999998875 4444333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.67  E-value=4e-15  Score=103.25  Aligned_cols=118  Identities=15%  Similarity=0.213  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ  122 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  122 (227)
                      ...+...|..++..|++.+|+..|.+++...|..               ..++.++|.+|...|++++|+..+++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            4557789999999999999999999999876543               2467789999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158          123 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  179 (227)
Q Consensus       123 p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (227)
                      |++..+++++|.++..+|+   +++|+..|.++++++|+ +..+...+..+...+..
T Consensus        95 p~~~~a~~~~~~~~~~l~~---~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHh
Confidence            9999999999999999999   99999999999999996 88888888777766664

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=1.6e-15  Score=105.34  Aligned_cols=88  Identities=15%  Similarity=0.038  Sum_probs=57.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158           54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  133 (227)
Q Consensus        54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  133 (227)
                      +|....++.++|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+...++
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44555566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCC
Q 027158          134 DVLYTLGG  141 (227)
Q Consensus       134 ~~~~~~g~  141 (227)
                      .+......
T Consensus       153 ~~~~~l~~  160 (169)
T d1ihga1         153 KVKQKIKA  160 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.5e-15  Score=114.56  Aligned_cols=156  Identities=13%  Similarity=0.030  Sum_probs=108.6

Q ss_pred             CCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKA   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~   70 (227)
                      .|++++|+..|.++++..+      +...++..+|.+|...|++++|+..|++++...+..      ..++..+|.++..
T Consensus        50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (290)
T d1qqea_          50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (290)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence            4677788888887777532      223566777888888888888888888877764433      4566677776654


Q ss_pred             -cCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHH
Q 027158           71 -QGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-------LYHLAYADVL  136 (227)
Q Consensus        71 -~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~  136 (227)
                       .|++++|+.+|++++++.+..      ..++..+|.++...|+|++|+.+|++++...|.++       ..+...+.++
T Consensus       130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (290)
T d1qqea_         130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ  209 (290)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHH
Confidence             578888888888877764432      34577778888888888888888888877766553       3456667777


Q ss_pred             HHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          137 YTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       137 ~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ...|+   +..|...+.++++.+|.
T Consensus       210 l~~~d---~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         210 LAATD---AVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             HHTTC---HHHHHHHHHGGGCC---
T ss_pred             HHhcc---HHHHHHHHHHHHHhCCC
Confidence            77777   88888888888877774

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=4.9e-15  Score=111.70  Aligned_cols=152  Identities=18%  Similarity=0.142  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HH
Q 027158           26 VGRLEGILLEAKGLWAEAEKAYSSLLEDN------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HD   93 (227)
Q Consensus        26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~   93 (227)
                      .+...|.+|...|+|++|+..|.+++...      +....++..+|.+|...|++++|+..+++++++.+..      ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            45566899999999999999999999973      2234678999999999999999999999999987665      56


Q ss_pred             HHHHHHHHHHH-cccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch--
Q 027158           94 AWRELAEIYVS-LQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT--  164 (227)
Q Consensus        94 ~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~--  164 (227)
                      ++..+|.++.. .|++++|+.+|++++.+.+.      ...++.++|.++..+|+   +++|+..|++++...|. ..  
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~---y~~A~~~~~~~~~~~~~-~~~~  194 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ---YIEASDIYSKLIKSSMG-NRLS  194 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTSS-CTTT
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh---HHHHHHHHHHHHHhCcc-chhh
Confidence            88899999866 69999999999999976432      24568999999999999   99999999999998875 22  


Q ss_pred             -----hHHHhHHHHHHHHHhhh
Q 027158          165 -----KALFGICLCSSAIAQLT  181 (227)
Q Consensus       165 -----~~~~~l~~~~~~~~~~~  181 (227)
                           ..+...++++...++..
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~  216 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAV  216 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHH
T ss_pred             hhhHHHHHHHHHHHHHHhccHH
Confidence                 23345556665544433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.8e-15  Score=120.47  Aligned_cols=145  Identities=14%  Similarity=0.026  Sum_probs=102.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158           30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  109 (227)
Q Consensus        30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~  109 (227)
                      ++.+....+.|+.|+..+.+++..+|.+...+..+|..+...|+.++|+..+.+++..+|.  .++..+|.++...|+++
T Consensus        92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1          92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHH
Confidence            4455556677888888888888889999999999999999999999999999999988764  68899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158          110 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  180 (227)
Q Consensus       110 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (227)
                      +|+.+|++|+.++|+++.+++++|.++...|+   ..+|+.+|.+++..+|+ .+.++.++...+....+.
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~---~~~A~~~y~ral~~~~~-~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGD---HLTTIFYYCRSIAVKFP-FPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC---HHHHHHHHHHHHSSSBC-CHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999   99999999999999995 899999999888776653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.9e-14  Score=109.34  Aligned_cols=154  Identities=15%  Similarity=0.094  Sum_probs=141.9

Q ss_pred             ChHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQ-FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLN   82 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~   82 (227)
                      ..++|..+|++++.. .|.+...+...+......|+++.|...|++++...|.+. .+|..++......|+++.|...|.
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            357889999999975 678888999999999999999999999999999999775 578999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158           83 KYLETFMADHDAWRELAEIYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus        83 ~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ++++..|.+...|...|.... ..|+.+.|..+|++++...|+++..|..++..+...|+   ++.|...|++++...|.
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~---~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHSSSS
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC
Confidence            999999999999999998754 46899999999999999999999999999999999999   99999999999998764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=1.4e-15  Score=102.90  Aligned_cols=108  Identities=12%  Similarity=-0.008  Sum_probs=95.5

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN   73 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~   73 (227)
                      +.|++|+..|++++..+|+++.+++.+|.++...          +.+++|+..|+++++++|+++.+|+.+|.++..+|+
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence            4689999999999999999999999999999754          556899999999999999999999999999988753


Q ss_pred             -----------hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHH
Q 027158           74 -----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  111 (227)
Q Consensus        74 -----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A  111 (227)
                                 +++|+.+|+++++++|++..++..|+.+....+.+.++
T Consensus        91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          91 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             chhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                       68999999999999999999999998887555544443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.8e-13  Score=103.84  Aligned_cols=156  Identities=8%  Similarity=-0.058  Sum_probs=141.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCChHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK-AQGNFPTAIEW   80 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~   80 (227)
                      .|++++|..+|++++...|.+. .++...+......|+++.|...|.+++...|.+...+...+.... ..|+.+.|...
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            5889999999999999999764 578899999999999999999999999999999999998888654 46899999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      |++++..+|.++..|...+......|+++.|..+|++++...|.++    ..|..........|+   .+.+...++++.
T Consensus       192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~---~~~~~~~~~r~~  268 (308)
T d2onda1         192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC---HHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877553    467777777788899   999999999999


Q ss_pred             hhcCC
Q 027158          157 DLTGG  161 (227)
Q Consensus       157 ~~~~~  161 (227)
                      +..|.
T Consensus       269 ~~~~~  273 (308)
T d2onda1         269 TAFRE  273 (308)
T ss_dssp             HHTTT
T ss_pred             HHCcc
Confidence            99885

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-13  Score=85.81  Aligned_cols=80  Identities=10%  Similarity=0.029  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158           58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  130 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  130 (227)
                      ++.++.+|.++...|++++|+.+|++++++.|.+       +.++.++|.++...|++++|+.+|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4445667777777777777777777777665443       456667777777777777777777777777777777777


Q ss_pred             HHHHHHH
Q 027158          131 AYADVLY  137 (227)
Q Consensus       131 ~la~~~~  137 (227)
                      +++.+..
T Consensus        85 Nl~~~~~   91 (95)
T d1tjca_          85 NLKYFEY   91 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-14  Score=116.87  Aligned_cols=136  Identities=12%  Similarity=-0.038  Sum_probs=93.9

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158            4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK   83 (227)
Q Consensus         4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   83 (227)
                      +.|+.|+..+.+.....|++...+..+|..+...|++++|+..+.+++..+|  ..++..+|.++...|++++|+.+|++
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~  177 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRH  177 (497)
T ss_dssp             HHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3456666666666677888899999999999999999999999999998776  36788999999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      +++++|+++.+|..||.++...|++.+|+.+|.+++..+|..+.++.+++.++.+..+
T Consensus       178 A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999988876543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.1e-12  Score=98.28  Aligned_cols=122  Identities=16%  Similarity=0.025  Sum_probs=96.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCCch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKA   70 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~   70 (227)
                      ..|++++|+.++++++...|++.     .++..+|.++...|++++|+..|++++...|..      ..++..++.++..
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            46999999999999999999753     467789999999999999999999999864322      3556777888888


Q ss_pred             cCChHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158           71 QGNFPTAIEWLNKYLETFMAD--------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  123 (227)
                      .|++..+...+.+++...+..        ...+..+|.++...|+++.|...+++++...+
T Consensus       104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            888888888888887754321        34566777888888888888887777776544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.43  E-value=2.8e-13  Score=92.56  Aligned_cols=91  Identities=16%  Similarity=0.057  Sum_probs=48.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------
Q 027158           31 GILLEAKGLWAEAEKAYSSLLEDNPLDP------------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------   91 (227)
Q Consensus        31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------   91 (227)
                      |..++..|+|++|+..|++++.+.|+.+            .+|.++|.++..+|++++|+..+++++.+.|..       
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            5566666777777777777776655432            345555555555555555555555555543311       


Q ss_pred             ----HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158           92 ----HDAWRELAEIYVSLQMYKQAAFCYEELILS  121 (227)
Q Consensus        92 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~  121 (227)
                          ..+++++|.+|...|++++|+..|++++++
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                123444455555555555555555554444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1e-12  Score=81.89  Aligned_cols=84  Identities=12%  Similarity=0.025  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCc
Q 027158           91 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN  163 (227)
Q Consensus        91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~  163 (227)
                      +++.++.+|.+++..|+|++|+.+|++|+++.|.+       ..++.++|.+++..|+   +++|+.+|+++++++|+ +
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~---~~~A~~~y~~aL~l~P~-~   79 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD---LDKALLLTKKLLELDPE-H   79 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-C
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC---hHHHHHHHHHHHHhCcC-C
Confidence            45678899999999999999999999999886543       5789999999999999   99999999999999996 8


Q ss_pred             hhHHHhHHHHHHHHH
Q 027158          164 TKALFGICLCSSAIA  178 (227)
Q Consensus       164 ~~~~~~l~~~~~~~~  178 (227)
                      ..++.++......+.
T Consensus        80 ~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          80 QRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            899998887766553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.43  E-value=3.1e-13  Score=92.33  Aligned_cols=100  Identities=13%  Similarity=0.001  Sum_probs=86.2

Q ss_pred             HHHHHH--HHHHHHcCChHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158           59 VLHKRR--VAIAKAQGNFPTAIEWLNKYLETFMAD------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  124 (227)
Q Consensus        59 ~~~~~l--~~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  124 (227)
                      .++..+  |..++..|++++|+..|++++++.|..            +.+|.++|.+|...|+|++|+..+++++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            344444  778889999999999999999998875            357899999999999999999999999976542


Q ss_pred             -----------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          125 -----------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       125 -----------~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                                 ...+++++|.++..+|+   +++|+..|++++++.|.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~---~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHhhHH
Confidence                       13468999999999999   99999999999999774

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.39  E-value=5.8e-13  Score=98.51  Aligned_cols=127  Identities=13%  Similarity=0.043  Sum_probs=110.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHH
Q 027158           32 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  111 (227)
Q Consensus        32 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A  111 (227)
                      .-.+..|++++|+..++++++.+|++..++..++.+++..|++++|+..|+++++++|++..++..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34567799999999999999999999999999999999999999999999999999999999999999999888888777


Q ss_pred             HHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158          112 AFCYEELIL-SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       112 ~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      ...+..... ..|.....+...+..+...|+   +++|...+.++.+..|.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd---~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQE  131 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC
Confidence            655444332 345556677888899999999   99999999999999986

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.3e-11  Score=93.84  Aligned_cols=156  Identities=17%  Similarity=0.147  Sum_probs=126.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHH
Q 027158            3 CQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DPVLHKRRVAIAKA   70 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~l~~~~~~   70 (227)
                      .|+++.+...+.++....+..     ...+...+..+...+++..+...+.++....+.       ...++..++.++..
T Consensus       146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (366)
T d1hz4a_         146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM  225 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence            578899999999998876632     345566778888889999999998888775322       23567778888999


Q ss_pred             cCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcC
Q 027158           71 QGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILS------QPTVPLYHLAYADVLYTLG  140 (227)
Q Consensus        71 ~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g  140 (227)
                      .|++++|...+++++...|.+    ...+..+|.++...|++++|+..+++++..      .|....++..+|.++...|
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  305 (366)
T d1hz4a_         226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG  305 (366)
T ss_dssp             TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence            999999999999998877655    456778999999999999999999999843      3445678899999999999


Q ss_pred             CCCcHHHHHHHHHHHhhhcCC
Q 027158          141 GVDNILLAKKYYASTIDLTGG  161 (227)
Q Consensus       141 ~~~~~~~A~~~~~~~~~~~~~  161 (227)
                      +   +++|+..+++++++.+.
T Consensus       306 ~---~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         306 R---KSDAQRVLLDALKLANR  323 (366)
T ss_dssp             C---HHHHHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHHHhhh
Confidence            9   99999999999988653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.35  E-value=5.1e-13  Score=98.81  Aligned_cols=128  Identities=11%  Similarity=-0.088  Sum_probs=109.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      |..|++++|+..++++++.+|++..++..++.++...|++++|+..++++++.+|++..++..++.++...+..+++...
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999988777666655444


Q ss_pred             HHHHHH-HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158           81 LNKYLE-TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  128 (227)
Q Consensus        81 ~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  128 (227)
                      +.+... ..|.....+...+.++...|++++|...++++.+..|..+..
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            333222 245555677788999999999999999999999999987644

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=2e-11  Score=84.98  Aligned_cols=119  Identities=13%  Similarity=-0.035  Sum_probs=97.2

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158           24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  103 (227)
Q Consensus        24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  103 (227)
                      ...+...|......|++++|+..|.+++.+.++.......       .+.     -.......+.+....++..++.++.
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~-----w~~~~r~~l~~~~~~a~~~la~~~~   78 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQ-----FVEPFATALVEDKVLAHTAKAEAEI   78 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TST-----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778899999999999999999999998876432111       111     1223334455666789999999999


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158          104 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  157 (227)
Q Consensus       104 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~  157 (227)
                      ..|++++|+.++++++..+|.+..+|..++.++...|+   +.+|+..|+++..
T Consensus        79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr---~~eAl~~y~~~~~  129 (179)
T d2ff4a2          79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKT  129 (179)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHH
T ss_pred             HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999   9999999999844

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.05  E-value=1.4e-07  Score=68.98  Aligned_cols=165  Identities=15%  Similarity=0.062  Sum_probs=125.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCh
Q 027158            3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNF   74 (227)
Q Consensus         3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~   74 (227)
                      .+++++|+..|+++.+.  ++..+.+.+|.++..    ..++..|..++..+....  ++.+...+|.++..    ..+.
T Consensus        15 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~   90 (265)
T d1ouva_          15 EKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT   90 (265)
T ss_dssp             TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccccccccccccchhh
Confidence            57999999999999775  578899999999987    678999999999887543  66777777777664    3566


Q ss_pred             HHHHHHHHHHHHH----------------------------------cCCCHHHHHHHHHHHHH----cccHHHHHHHHH
Q 027158           75 PTAIEWLNKYLET----------------------------------FMADHDAWRELAEIYVS----LQMYKQAAFCYE  116 (227)
Q Consensus        75 ~~A~~~~~~~l~~----------------------------------~p~~~~~~~~la~~~~~----~~~~~~A~~~~~  116 (227)
                      +.|...++++...                                  .+.+...+..+|.++..    ..+...+..+++
T Consensus        91 ~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  170 (265)
T d1ouva_          91 NKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYD  170 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhh
Confidence            7777777776543                                  23445667788888876    356777888888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158          117 ELILSQPTVPLYHLAYADVLYT-LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  176 (227)
Q Consensus       117 ~al~~~p~~~~~~~~la~~~~~-~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (227)
                      .+..  +.++.+.+++|.++.. .|-..++++|+.+|.++.+..   ++.+++.++.++..
T Consensus       171 ~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~  226 (265)
T d1ouva_         171 KACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN  226 (265)
T ss_dssp             HHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred             cccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHc
Confidence            7764  5678999999998887 221233999999999998874   56788888888864

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=7.2e-10  Score=76.88  Aligned_cols=106  Identities=10%  Similarity=0.018  Sum_probs=85.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158            2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL   81 (227)
Q Consensus         2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   81 (227)
                      +.|++++|...|.+++...+.........       +.|-     ......+.+....++..++.++...|++++|+.++
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w~-----~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRD-------FQFV-----EPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STTH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcc-------hHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            46899999999999999988665332211       1111     11222233445678899999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      ++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999984

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=2e-07  Score=59.28  Aligned_cols=72  Identities=8%  Similarity=-0.105  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158           58 PVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADH-DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  129 (227)
Q Consensus        58 ~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  129 (227)
                      ....+.+|.++.+..   +.++++.+++.++..+|.+. ++++.||..|++.|+|++|..+++++++++|++..+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            344445555444432   23455555555555554432 4555555555555555555555555555555554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.75  E-value=6e-07  Score=65.43  Aligned_cols=129  Identities=12%  Similarity=0.016  Sum_probs=98.8

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHcCCCHHHHHHH
Q 027158           23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWREL   98 (227)
Q Consensus        23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l   98 (227)
                      +|.+++.+|..+...+++.+|+++|+++.+.  ++..+++.+|.++..    ..++..|..+++.+..  +.++.++..+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhcc
Confidence            5788999999999999999999999999865  588999999999987    6689999999999765  5588899999


Q ss_pred             HHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhh
Q 027158           99 AEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG-VDNILLAKKYYASTID  157 (227)
Q Consensus        99 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~~~~A~~~~~~~~~  157 (227)
                      |.++..    .++.+.|..+++.+....+  ..+...++..+..... ......|...+.+...
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~  138 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD  138 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc
Confidence            988875    4678999999999887543  4445555555543221 1225555555555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.73  E-value=3e-07  Score=60.12  Aligned_cols=115  Identities=21%  Similarity=0.114  Sum_probs=80.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHH
Q 027158           38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAF  113 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~  113 (227)
                      .|+++|+.+|+++.+..  ++.+...++.  ....+.++|+.+++++.+  ..++.+.+.||.+|..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHHH
Confidence            35677777777777653  3444445543  234567888888888765  4578888888888876    456888888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhhcC
Q 027158          114 CYEELILSQPTVPLYHLAYADVLYT-LGGVDNILLAKKYYASTIDLTG  160 (227)
Q Consensus       114 ~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~~~~A~~~~~~~~~~~~  160 (227)
                      +|+++.+.  .++.+.+.+|.+|.. .|-..+..+|+.+|+++.+...
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            88888764  467788888887766 2212338888888888887754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=1.1e-07  Score=60.57  Aligned_cols=85  Identities=11%  Similarity=0.013  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158           91 DHDAWRELAEIYVSL---QMYKQAAFCYEELILSQPTVP-LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  166 (227)
Q Consensus        91 ~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~  166 (227)
                      ...+.++.|.++.+.   ++.++++.+++.++..+|.+. .+++.+|..|+++|+   +++|..+++++++++|+ +..+
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd---y~~A~~~~~~~L~ieP~-n~qA  109 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERN-NKQV  109 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHccCCC-cHHH
Confidence            477889999999865   567899999999999999775 799999999999999   99999999999999996 8888


Q ss_pred             HHhHHHHHHHHHh
Q 027158          167 LFGICLCSSAIAQ  179 (227)
Q Consensus       167 ~~~l~~~~~~~~~  179 (227)
                      ......+...+..
T Consensus       110 ~~L~~~Ie~~~~k  122 (124)
T d2pqrb1         110 GALKSMVEDKIQK  122 (124)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            7777666666543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.69  E-value=6.1e-07  Score=58.55  Aligned_cols=111  Identities=12%  Similarity=-0.136  Sum_probs=92.4

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIEW   80 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~   80 (227)
                      ++++|+.+|+++.+..  ++.+.+.++.  ....+.++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            6889999999998864  4555555653  3457899999999999865  588999999999886    4578999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC
Q 027158           81 LNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQP  123 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p  123 (227)
                      |+++.+.  .++.+.+.||.+|..    ..++.+|+.+|+++.+...
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            9999764  588999999999987    4689999999999987654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.65  Score=35.32  Aligned_cols=114  Identities=15%  Similarity=0.049  Sum_probs=55.5

Q ss_pred             ChHHHHHHHHHHHHhCCCchhhHHHHH----HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158            5 CLDVAKDCIKVLQKQFPESKRVGRLEG----ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW   80 (227)
Q Consensus         5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a----~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   80 (227)
                      +.+.|...+.......+.+........    ......+..+.+............+ ......++......+++..+...
T Consensus       229 d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~w~~~~al~~~~~~~~~~~  307 (450)
T d1qsaa1         229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTW  307 (450)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc-hHHHHHHHHHHHHcCChHHHHHH
Confidence            445566666666555543332222222    1222234455555555555443332 22222222233445566666666


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      +...-......+...+-+|..+...|+.+.|...|..+-
T Consensus       308 ~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            554332222335555666666666666666666666654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.45  E-value=0.97  Score=33.06  Aligned_cols=110  Identities=11%  Similarity=-0.024  Sum_probs=66.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHH
Q 027158           32 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  111 (227)
Q Consensus        32 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A  111 (227)
                      .++...+++..|.....+.     +++..|..+...+.......-+..+ ...   -..+++-...+...|...|.+++.
T Consensus        48 ~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~L  118 (336)
T d1b89a_          48 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEEL  118 (336)
T ss_dssp             HHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHH
Confidence            4455556666665555443     3456666666666665544332111 100   112445555667777778888888


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158          112 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus       112 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      +.+++.++...+.++..+..++.++.+.+    ..+-.++++.
T Consensus       119 i~~Le~~~~~~~~~~~~~~~L~~lyak~~----~~kl~e~l~~  157 (336)
T d1b89a_         119 ITMLEAALGLERAHMGMFTELAILYSKFK----PQKMREHLEL  157 (336)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHTTC----HHHHHHHHHH
T ss_pred             HHHHHHHHcCCccchHHHHHHHHHHHHhC----hHHHHHHHHh
Confidence            88888888777777778888888776654    3455555543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.06  E-value=1.6  Score=31.92  Aligned_cols=120  Identities=13%  Similarity=-0.034  Sum_probs=70.1

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158           22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  101 (227)
Q Consensus        22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  101 (227)
                      +++.+|......+........|... ...   ...++.-.......+...|.+++.+.+++.++...+.+...+..++.+
T Consensus        67 ~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~l  142 (336)
T d1b89a_          67 NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  142 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHH
Confidence            3455666666666666555443221 111   123444445667777888888888888888887778888888888887


Q ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158          102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  154 (227)
Q Consensus       102 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  154 (227)
                      |.+.+ .++-.+.++..  .+.-++.   ....+....+-   +.++.-.|.+
T Consensus       143 yak~~-~~kl~e~l~~~--s~~y~~~---k~~~~c~~~~l---~~elv~Ly~~  186 (336)
T d1b89a_         143 YSKFK-PQKMREHLELF--WSRVNIP---KVLRAAEQAHL---WAELVFLYDK  186 (336)
T ss_dssp             HHTTC-HHHHHHHHHHH--STTSCHH---HHHHHHHTTTC---HHHHHHHHHH
T ss_pred             HHHhC-hHHHHHHHHhc--cccCCHH---HHHHHHHHcCC---hHHHHHHHHh
Confidence            76654 33433333322  1111222   12344455566   7777776655

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.43  E-value=2.2  Score=32.28  Aligned_cols=118  Identities=13%  Similarity=0.035  Sum_probs=52.3

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158           35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA----KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  110 (227)
Q Consensus        35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~  110 (227)
                      ....+.+.|...+.......+.....+.......    ...+..+.+...+........+.......++ .....+++..
T Consensus       225 la~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~  303 (450)
T d1qsaa1         225 VARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRG  303 (450)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHH
T ss_pred             HhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHH
Confidence            3344555555555555444443333222222211    1233444555555444433322222222222 2334455555


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158          111 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  156 (227)
Q Consensus       111 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~  156 (227)
                      +...+...-......+...+-+|..+...|+   .+.|...|..+.
T Consensus       304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~---~~~A~~~~~~~a  346 (450)
T d1qsaa1         304 LNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLM  346 (450)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHhcCcccccHHHHHHHHHHHHHHcCC---hhhHHHHHHHHh
Confidence            5555544322222334455555666666666   555555555544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=87.70  E-value=2  Score=26.57  Aligned_cols=80  Identities=13%  Similarity=-0.042  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158           38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVA-IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE  116 (227)
Q Consensus        38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  116 (227)
                      ++...-+.++-.+-   ..+.  |..++. +...+|+-++-...++..++-..-+|+....+|.+|.+.|.-.+|-+++.
T Consensus        70 ~Nlk~vv~C~~~~n---~~se--~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~  144 (161)
T d1wy6a1          70 QNLKSVVECGVINN---TLNE--HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI  144 (161)
T ss_dssp             SCTHHHHHHHHHTT---CCCH--HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcHHHHHHHHHHhc---chHH--HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            45555555544332   2221  234443 55667777777777777777666678888888888888888888888888


Q ss_pred             HHHhhC
Q 027158          117 ELILSQ  122 (227)
Q Consensus       117 ~al~~~  122 (227)
                      +|-+..
T Consensus       145 ~ACe~G  150 (161)
T d1wy6a1         145 EACKKG  150 (161)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            776543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.71  E-value=0.72  Score=25.80  Aligned_cols=26  Identities=15%  Similarity=0.203  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158           94 AWRELAEIYVSLQMYKQAAFCYEELI  119 (227)
Q Consensus        94 ~~~~la~~~~~~~~~~~A~~~~~~al  119 (227)
                      .+...|.-+...|.|++|++|.+++.
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44556666777777777777765554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=86.40  E-value=2.4  Score=26.19  Aligned_cols=82  Identities=12%  Similarity=0.005  Sum_probs=58.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 027158           72 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY  151 (227)
Q Consensus        72 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~  151 (227)
                      ++...-+.++-.+    ..........-.+...+|+-++-.+.++..++-..-+|..+..+|.+|-+.|.   ..+|-+.
T Consensus        70 ~Nlk~vv~C~~~~----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~---~re~nel  142 (161)
T d1wy6a1          70 QNLKSVVECGVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGD---ERDATTL  142 (161)
T ss_dssp             SCTHHHHHHHHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred             hcHHHHHHHHHHh----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc---hhhHHHH
Confidence            4555555555432    22223222233455678888888888888888777889999999999999999   9999999


Q ss_pred             HHHHhhhcC
Q 027158          152 YASTIDLTG  160 (227)
Q Consensus       152 ~~~~~~~~~  160 (227)
                      +.++-+..-
T Consensus       143 l~~ACe~G~  151 (161)
T d1wy6a1         143 LIEACKKGE  151 (161)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhH
Confidence            999987643

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.07  E-value=1.9  Score=33.34  Aligned_cols=51  Identities=20%  Similarity=0.150  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158           91 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  141 (227)
Q Consensus        91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  141 (227)
                      ..+.....|...+..|+|..|.++...++..+|++..+...++.+|..+|.
T Consensus       429 G~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~  479 (505)
T d2cfua2         429 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY  479 (505)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            356777888889999999999999999999999999999999999998885

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.76  E-value=1.9  Score=24.02  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH
Q 027158           60 LHKRRVAIAKAQGNFPTAIEWLNKYL   85 (227)
Q Consensus        60 ~~~~l~~~~~~~~~~~~A~~~~~~~l   85 (227)
                      .+...+.-+...|+|++||++.+++.
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456667777777777777776654