Citrus Sinensis ID: 027172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MVYIHNSISVCNSIDQNMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPACDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQRKIKK
Secondary Structure (PSIPRED)
ccEEEccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccEEEcccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHEEEEEEEccHHHHcccccccccHHcccccccHHHHHHHHHcccccccEEEEEEcccccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
MVYIHNSISVCNSIdqnmancvnssdafnskprqnnhvyrnkkipsspnclktpacdrsrfrsaAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEevignpliyssigVSMSCVAIATWVALLCTsrkcgnpnckglkKAAEFDIQLETEECVKNKdsakkglfelprDHHRELQAELkkmappngrAVLVFRARcgcsvgrlevpgpkkqrkikk
Flexible Loop (DISEMBL)
MVYIHNSISVCNSIDQNMANCVNSSDAFNSKPRQNNHvyrnkkipsspnclKTPACDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKdsakkglfelprDHHRELQAELkkmappngRAVLVFRARCGCsvgrlevpgpkkqrkikk
Low Complexity Region (SEG)
MVYIHNSISVCNSIDQNMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPACDRSRFRSaavdvviliavitaCGFLLFPYIRvvsvksvevsaavFYLVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQRKIKK
Disordered region (IsUnstruct)
**YIHNSISVCNSIDQNMA*C*******************************TPACDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEEC**********************************RAVLVFRARCGCSVGRL*************
Disordered Region (DISOPRED)
***IHNSISVCNSIDQ*******************************************RFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSR*******KGLKKAAEFDIQLETE*************FELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRL*************
Disordered Region (DISEMBL)
MVYIHNSISVCNSIDQNMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPACDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVP**********
Disordered Region (DISPRO)
MVYIHNSISVCNSIDQN*************************************ACDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPK*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVYIHNSISVCNSIDQNMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPACDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQRKIKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
P0C8Q9	259	Uncharacterized protein A	no	no	0.392	0.343	0.551	2e-21

>sp|P0C8Q9|Y5902_ARATH Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 69/98 (70%), Gaps = 9/98 (9%)

Query: 137 SRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRE-------LQAEL 189
           SRKC NP CKG+KKA EFD+QL+TEECVK+   + K +  LP     E       L+AEL
Sbjct: 150 SRKCRNPKCKGMKKAMEFDLQLQTEECVKS--GSVKEIDRLPWKGGSESNPDYECLRAEL 207

Query: 190 KKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQRKIKK 227
           +KMAP NGRAVL+FR++CGC + +LE  GPK+ R+ KK
Sbjct: 208 RKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
225452847	231	PREDICTED: uncharacterized protein LOC10	0.986	0.969	0.683	4e-85
224080145	229	predicted protein [Populus trichocarpa]	0.960	0.951	0.689	5e-85
224141407	229	predicted protein [Populus trichocarpa]	0.960	0.951	0.676	2e-83
388497696	247	unknown [Lotus japonicus]	0.986	0.906	0.632	1e-79
449461945	225	PREDICTED: uncharacterized protein LOC10	0.955	0.964	0.646	4e-78
255582117	235	60S ribosomal protein L34, putative [Ric	0.947	0.914	0.655	3e-77
297832820	230	structural constituent of ribosome [Arab	0.977	0.965	0.625	4e-74
388504646	237	unknown [Medicago truncatula]	0.986	0.945	0.608	1e-73
357496425	270	hypothetical protein MTR_6g012390 [Medic	0.982	0.825	0.610	1e-73
18395728	215	ribosomal protein L34e-like protein [Ara	0.938	0.990	0.633	5e-73

>gi|225452847|ref|XP_002283702.1| PREDICTED: uncharacterized protein LOC100259485 [Vitis vinifera]

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 160/234 (68%), Positives = 188/234 (80%), Gaps = 10/234 (4%)

Query: 1   MVYIHNSISVCNSIDQN--MANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPACDR 58
           MVY H+SISVCNS+DQ+  MA+ +NS +A  SK RQNNH  RN+K P+SPN  K P C R
Sbjct: 1   MVYFHSSISVCNSVDQSGIMASSLNSGEAC-SKSRQNNHACRNRKTPNSPNSAKIPDCSR 59

Query: 59  SRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSI 118
           SR  SA +D+V+LIAV+ ACGFLLFPY++VV+ + V++  A+ YL KEEV   P++Y S+
Sbjct: 60  SR--SAMIDLVMLIAVVGACGFLLFPYVKVVANEFVKLVGAIIYLTKEEVSRAPMVYGSL 117

Query: 119 GVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKN-----KDSAKKG 173
           GVS+   AIA W  L+CTSRKCG PNC+GL+KAAEFDIQLETEECVKN     KD  KKG
Sbjct: 118 GVSVLFAAIAVWGILICTSRKCGKPNCRGLRKAAEFDIQLETEECVKNSSSLVKDGLKKG 177

Query: 174 LFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQRKIKK 227
           LFELPRDHHREL+AELKKMAPPNGRAVLVFRARCGCSVGR+EVPGPKK RK KK
Sbjct: 178 LFELPRDHHRELEAELKKMAPPNGRAVLVFRARCGCSVGRMEVPGPKKLRKFKK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080145|ref|XP_002306031.1| predicted protein [Populus trichocarpa] gi|222848995|gb|EEE86542.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 160/232 (68%), Positives = 184/232 (79%), Gaps = 14/232 (6%)

Query: 1   MVYIHNSISVCNSIDQN----MANCVNSSDAFNSKPRQNN-HVYRNKKIPSSPNCLKTPA 55
           MVY H+SISVCNS DQ+    MAN VNSS+ FN K R NN HV++N+K  +  NC   P 
Sbjct: 1   MVYFHSSISVCNSFDQSSTASMANSVNSSE-FNPKSRHNNNHVHKNRKTVNGSNCKTIPV 59

Query: 56  CDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIY 115
           CDRS+  SA +DVVILIAVI ACGFLLFPYIR+V++  +E  AA+ Y+VKEEV+ NP+IY
Sbjct: 60  CDRSQ--SAVIDVVILIAVIGACGFLLFPYIRIVTLGFIEFVAAIHYVVKEEVMRNPVIY 117

Query: 116 SSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKN------KDS 169
            SIG+S  C AI  W+ +LC +RKCGNPNCKGL+KAAEFDIQLETEECVKN      KD 
Sbjct: 118 GSIGISSLCAAIVAWIVILCAARKCGNPNCKGLRKAAEFDIQLETEECVKNSNGTLVKDG 177

Query: 170 AKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKK 221
            K+GLFELP DHHREL+AELKKMAP NGRAVLVFRARCGCSVGRLEVPGPKK
Sbjct: 178 LKRGLFELPHDHHRELEAELKKMAPTNGRAVLVFRARCGCSVGRLEVPGPKK 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141407|ref|XP_002324064.1| predicted protein [Populus trichocarpa] gi|222867066|gb|EEF04197.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/232 (67%), Positives = 184/232 (79%), Gaps = 14/232 (6%)

Query: 1   MVYIHNSISVCNSIDQN----MANCVNSSDAFNSKPRQNN-HVYRNKKIPSSPNCLKTPA 55
           MVY H+SISVCNS+DQ+    MAN VNS++ FN K R NN HV++N+K  +  +C   P 
Sbjct: 1   MVYFHSSISVCNSVDQSSTTSMANPVNSNE-FNPKSRHNNNHVHKNRKTANGSSCKTIPV 59

Query: 56  CDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIY 115
           CDRSR  SA +DVVILIAVI ACGFLLFPYI++V +  +E  AA+ Y+VKEEV+ NPLI+
Sbjct: 60  CDRSR--SAVIDVVILIAVIGACGFLLFPYIKLVILGLIEFVAAIHYVVKEEVMRNPLIF 117

Query: 116 SSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKN------KDS 169
            SIG+S  C  I  W+ +LCT+RKCGNPNCKGL+KAAEFDIQLETEEC+KN      KD 
Sbjct: 118 GSIGISTFCAGIVAWIVILCTTRKCGNPNCKGLRKAAEFDIQLETEECMKNSNGTLVKDG 177

Query: 170 AKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKK 221
            K+GLFELPRDHHREL+AELKKMAP NGRAVLVFRARCGCSVGRLEVPG KK
Sbjct: 178 LKRGLFELPRDHHRELEAELKKMAPANGRAVLVFRARCGCSVGRLEVPGTKK 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497696|gb|AFK36914.1| unknown [Lotus japonicus]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/250 (63%), Positives = 184/250 (73%), Gaps = 26/250 (10%)

Query: 1   MVYIHNSISVCNSIDQ----NMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPAC 56
           MVY H+SIS+C S+DQ     MAN + SSD F SK RQ+N + RN++ PSS N L+ P C
Sbjct: 1   MVYFHSSISLCKSVDQPPAPAMANSICSSD-FGSKSRQSNSLQRNRRGPSSSNSLQIPPC 59

Query: 57  DRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYS 116
           DRSR  SA VDVV+ IAV+ ACGFL FPYI  +  KS+++   V +LVKEEV   P IY 
Sbjct: 60  DRSR--SAMVDVVMFIAVVCACGFLFFPYIEFLITKSIQIGRVVLFLVKEEVAVAPSIYI 117

Query: 117 SIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKN-----KDSA- 170
           +IG+S+ C A+ATW  + CT+RKCGNPNCKGLKKAAEFDIQLETE+CVKN     KD   
Sbjct: 118 AIGLSVLCAALATWGVVACTTRKCGNPNCKGLKKAAEFDIQLETEDCVKNSPPLSKDGGD 177

Query: 171 -KKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVP------------ 217
            KKGLFELPRDHHREL+AELKKMAPPNGRAVL+ RARCGCSVGRLEVP            
Sbjct: 178 VKKGLFELPRDHHRELEAELKKMAPPNGRAVLILRARCGCSVGRLEVPGHKKPVGRIEVL 237

Query: 218 GPKKQRKIKK 227
           GPKK RK+KK
Sbjct: 238 GPKKHRKVKK 247

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461945|ref|XP_004148702.1| PREDICTED: uncharacterized protein LOC101215142 [Cucumis sativus] gi|449517213|ref|XP_004165640.1| PREDICTED: uncharacterized LOC101215142 [Cucumis sativus]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/235 (64%), Positives = 181/235 (77%), Gaps = 18/235 (7%)

Query: 1   MVYIHNSISVCNSIDQN--MANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPACDR 58
           MVY   SISVC S+DQ   MA+ VN +D+ +          RNKK+ +S  C K P C R
Sbjct: 1   MVYFPYSISVCKSVDQPTVMASSVNLADSSSKS--------RNKKMTASSTCSKFPVCHR 52

Query: 59  SRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSI 118
           SR  SA +D+VILIAV+ ACGFLLFPY+++V V+S+E+  A+ YL+ EEV   P IY SI
Sbjct: 53  SR--SAVIDIVILIAVVGACGFLLFPYMKLVIVESLEIFGAILYLMGEEVSRAPWIYGSI 110

Query: 119 GVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKN-----KDSAKKG 173
           G+S+ C ++A WV L+CTSRKCGNP CKGL+KAAEFDIQLETEECVKN     K+  KKG
Sbjct: 111 GLSIFCASLAAWVVLICTSRKCGNPYCKGLRKAAEFDIQLETEECVKNSTPLVKNGVKKG 170

Query: 174 LFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ-RKIKK 227
           LFELPRDHHREL+AELKKMAPPNGRAVL+FRARCGCSVGRLEVPGP+KQ +KIKK
Sbjct: 171 LFELPRDHHRELEAELKKMAPPNGRAVLIFRARCGCSVGRLEVPGPRKQLKKIKK 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582117|ref|XP_002531853.1| 60S ribosomal protein L34, putative [Ricinus communis] gi|223528503|gb|EEF30531.1| 60S ribosomal protein L34, putative [Ricinus communis]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/229 (65%), Positives = 176/229 (76%), Gaps = 14/229 (6%)

Query: 1   MVYIHNSISVCNSIDQN----MANCVNSSDAFNSKPRQNNHVYRNKKIPSSP-NCLKTPA 55
           MVY H+SISVCNS+DQ+    MAN VNS++  + K +  NH    +K+ ++  NC   P 
Sbjct: 1   MVYFHSSISVCNSVDQSAATVMANSVNSNE-LHPKLKNKNHGQNGRKMNNNHVNCSSIPV 59

Query: 56  CDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIY 115
           CDRSR  SA VDVVILIAVI ACGFLLFPYI+VV+   ++    +  LVKEE++ +P+IY
Sbjct: 60  CDRSR--SAVVDVVILIAVIAACGFLLFPYIKVVTFCLIKFVTVMHSLVKEEILRSPMIY 117

Query: 116 SSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKN------KDS 169
           +SIGV   C AIA W+   CT+RKCGNPNCKGL+KAAEFDIQLETEECVKN      KD 
Sbjct: 118 ASIGVGTFCAAIAVWIVFTCTTRKCGNPNCKGLRKAAEFDIQLETEECVKNSNGSLVKDG 177

Query: 170 AKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPG 218
            K+GLFELPRDHHREL+AELKKMAPPNGRAVLVFRARCGCSVGRLEVPG
Sbjct: 178 VKRGLFELPRDHHRELEAELKKMAPPNGRAVLVFRARCGCSVGRLEVPG 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832820|ref|XP_002884292.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata] gi|297330132|gb|EFH60551.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 147/235 (62%), Positives = 181/235 (77%), Gaps = 13/235 (5%)

Query: 1   MVYIHNSISVCNSIDQN----MANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPAC 56
           MVY+H+SISVCNS+DQ     M+N V+SSD     P+  N   ++    S   C K P C
Sbjct: 1   MVYLHSSISVCNSVDQAPTLIMSNSVHSSDL---HPKSRNTRNKSSYTSSPITCSKFPVC 57

Query: 57  DRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYS 116
           D S+  SAA+DVVILIAVITACGFL FPY++++++KS+EV + +  LVKEE++ NP++Y 
Sbjct: 58  DGSQ--SAAIDVVILIAVITACGFLFFPYVKLITLKSIEVFSDLSVLVKEEILQNPIVYG 115

Query: 117 SIGVSMSCVAIATW-VALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVK--NKDSAKKG 173
           S+ +S+ C AI+TW V LLCT ++CG PNCKGL+KA EFDIQLETEECVK  N +S K+G
Sbjct: 116 SLALSIFCAAISTWLVILLCTMQRCGKPNCKGLRKAVEFDIQLETEECVKSSNNNSNKRG 175

Query: 174 LFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKK-QRKIKK 227
           + ELPR HHREL+AELKKMAPPNGRAVLVFRARCGCSV RL V GPKK QRKIKK
Sbjct: 176 MIELPRVHHRELEAELKKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQQRKIKK 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504646|gb|AFK40389.1| unknown [Medicago truncatula]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/240 (60%), Positives = 178/240 (74%), Gaps = 16/240 (6%)

Query: 1   MVYIHNSISVCNSIDQ-----NMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPA 55
           MVY H+SIS+C S+DQ     +MAN +     + SK +Q N   RN++  S  N +K P 
Sbjct: 1   MVYFHSSISLCKSVDQPPVQSSMANSIELGSKY-SKSKQTNQFQRNRRNHSLSNSVKIPP 59

Query: 56  CDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIY 115
           CDRSR  SA ++VV+ IAV+ ACGFL FPY+ ++ +KS ++ + + +L+ EEV   P IY
Sbjct: 60  CDRSR--SAMINVVMFIAVVIACGFLFFPYVELLVIKSFQIMSMMCFLIMEEVSYAPYIY 117

Query: 116 SSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKN-----KDSA 170
            SIG+S+ C A+ATW  ++CTS KCGNPNCKGLKKAAEFDIQLETE+CVKN     KD  
Sbjct: 118 ISIGISVVCAALATWGVIVCTSNKCGNPNCKGLKKAAEFDIQLETEDCVKNSPSFVKDGG 177

Query: 171 --KKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGP-KKQRKIKK 227
             KKGLFELPRDHH+EL+AELKKMAP NGRAVLV RARCGCSVGRLEVPGP KK RKIKK
Sbjct: 178 VCKKGLFELPRDHHKELEAELKKMAPINGRAVLVLRARCGCSVGRLEVPGPAKKLRKIKK 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496425|ref|XP_003618501.1| hypothetical protein MTR_6g012390 [Medicago truncatula] gi|355493516|gb|AES74719.1| hypothetical protein MTR_6g012390 [Medicago truncatula]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/239 (61%), Positives = 177/239 (74%), Gaps = 16/239 (6%)

Query: 1   MVYIHNSISVCNSIDQ-----NMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPA 55
           MVY H+SIS+C S+DQ     +MAN +     + SK +Q N   RN++  S  N +K P 
Sbjct: 1   MVYFHSSISLCKSVDQPPVQSSMANSIELGSKY-SKSKQTNQFQRNRRNHSLSNSVKIPP 59

Query: 56  CDRSRFRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIY 115
           CDRSR  SA +DVV+ IAV+ ACGFL FPY+ ++ +KS ++ + + +L+ EEV   P IY
Sbjct: 60  CDRSR--SAMIDVVMFIAVVIACGFLFFPYVELLVIKSFQIMSMMCFLIMEEVSYAPYIY 117

Query: 116 SSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKN-----KDSA 170
            SIG+S+ C A+ATW  ++CTS KCGNPNCKGLKKAAEFDIQLETE+CVKN     KD  
Sbjct: 118 ISIGISVVCAALATWGVIVCTSNKCGNPNCKGLKKAAEFDIQLETEDCVKNSPSFVKDGG 177

Query: 171 --KKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGP-KKQRKIK 226
             KKGLFELPRDHH+EL+AELKKMAP NGRAVLV RARCGCSVGRLEVPGP KK RKIK
Sbjct: 178 VCKKGLFELPRDHHKELEAELKKMAPINGRAVLVLRARCGCSVGRLEVPGPAKKLRKIK 236

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395728|ref|NP_566133.1| ribosomal protein L34e-like protein [Arabidopsis thaliana] gi|45752752|gb|AAS76274.1| At3g01170 [Arabidopsis thaliana] gi|51968648|dbj|BAD43016.1| unknown protein [Arabidopsis thaliana] gi|110738475|dbj|BAF01163.1| hypothetical protein [Arabidopsis thaliana] gi|332640098|gb|AEE73619.1| ribosomal protein L34e-like protein [Arabidopsis thaliana]

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 145/229 (63%), Positives = 179/229 (78%), Gaps = 16/229 (6%)

Query: 1   MVYIHNSISVCNSIDQNMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPACDRSR 60
           MVY+H+SISVCNS+D  + +        +S P+  N   RNK   SSP C K P CD S+
Sbjct: 1   MVYLHSSISVCNSVDPMIMS--------HSSPKSRN--TRNKS-SSSPTCSKFPVCDGSQ 49

Query: 61  FRSAAVDVVILIAVITACGFLLFPYIRVVSVKSVEVSAAVFYLVKEEVIGNPLIYSSIGV 120
             SAA+DVVILIAVITACGFL FPY++++++KS+EV + +  LVK+E++ NP++Y S+ +
Sbjct: 50  --SAAIDVVILIAVITACGFLFFPYVKLITLKSIEVFSDLSLLVKQEILQNPIVYGSLAL 107

Query: 121 SMSCVAIATW-VALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPR 179
           S+ C AI+TW V LLCT ++CG PNCKGL+KA EFDIQLETEECVK+  S K+G+FELPR
Sbjct: 108 SIFCAAISTWLVILLCTMQRCGKPNCKGLRKAVEFDIQLETEECVKS-SSNKRGMFELPR 166

Query: 180 DHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKK-QRKIKK 227
            HHREL+AELKKMAPPNGRAVLVFRARCGCSV RL V GPKK QRKIKK
Sbjct: 167 VHHRELEAELKKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQQRKIKK 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2102112	215	AT3G01170 [Arabidopsis thalian	0.938	0.990	0.558	2.4e-60
TAIR|locus:2150941	234	AT5G15260 [Arabidopsis thalian	0.964	0.935	0.520	8.9e-54
TAIR|locus:2082430	241	AT3G06180 [Arabidopsis thalian	0.440	0.414	0.549	1.4e-23

TAIR|locus:2102112 AT3G01170 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 128/229 (55%), Positives = 154/229 (67%)

Query:     1 MVYIHNSISVCNSIDQNMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLKTPACDRSR 60
             MVY+H+SISVCNS+D  + +        +S P+  N   RNK   SSP C K P CD S+
Sbjct:     1 MVYLHSSISVCNSVDPMIMS--------HSSPKSRNT--RNKS-SSSPTCSKFPVCDGSQ 49

Query:    61 FRSXXXXXXXXXXXXXXCGFLLFPYIRXXXXXXXXXXXXXFYLVKEEVIGNPLIYSSIGV 120
               S              CGFL FPY++               LVK+E++ NP++Y S+ +
Sbjct:    50 --SAAIDVVILIAVITACGFLFFPYVKLITLKSIEVFSDLSLLVKQEILQNPIVYGSLAL 107

Query:   121 SMSCVAIATW-VALLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPR 179
             S+ C AI+TW V LLCT ++CG PNCKGL+KA EFDIQLETEECVK+  S K+G+FELPR
Sbjct:   108 SIFCAAISTWLVILLCTMQRCGKPNCKGLRKAVEFDIQLETEECVKSS-SNKRGMFELPR 166

Query:   180 DHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ-RKIKK 227
              HHREL+AELKKMAPPNGRAVLVFRARCGCSV RL V GPKKQ RKIKK
Sbjct:   167 VHHRELEAELKKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQQRKIKK 215

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2150941 AT5G15260 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 126/242 (52%), Positives = 156/242 (64%)

Query:     1 MVYIHNSISVCNSIDQNMANCVNSSDAFNSKPRQNNHVYRNKKIPSSPNCLK--TPACDR 58
             MVY  NSIS+   +DQ+     +S D F+   +Q+     N+K  SS +C    +  CD 
Sbjct:     1 MVYFQNSISL---VDQSPI-MAHSPD-FHHHSKQSRTSSSNRK-SSSSSCSSNFSVCCDG 54

Query:    59 SRFRSXXXXXXXXXXXXXXCGFLLFPYIRXXXXXXXXXXXXXFYLVKEEVIGNP--LIYS 116
             SR  S               GFL+FPYI+               LVKEE++ NP  ++Y 
Sbjct:    55 SR--SAAIDVVILIAVITSSGFLIFPYIKFITIKSVEIFSELSCLVKEEILRNPDPIVYG 112

Query:   117 SIGVSMSCVAIATW--VALLCTSRKCGNPNCKGLKKA-AEFDIQLETEECVKNKDS---- 169
              I +S+SC A++ W  V LLC+  +CG PNCKGL+KA AEFDIQLETE+CVK+ +S    
Sbjct:   113 LIALSISCTALSAWMIVILLCSRHRCGKPNCKGLRKANAEFDIQLETEDCVKSSNSGKSV 172

Query:   170 AKKGLFELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ----RKI 225
             +KKGLFELPRDHHREL+AELKKMAPPNGRAVLVFRA+CGCSVGRLEVPGPKKQ    RK+
Sbjct:   173 SKKGLFELPRDHHRELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKKQQLQQRKV 232

Query:   226 KK 227
             KK
Sbjct:   233 KK 234

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2082430 AT3G06180 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 61/111 (54%), Positives = 75/111 (67%)

Query:   126 AIATWVALLC--TSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHR 183
             A   ++ L C   SRKC NP CKGLKKA EFD+QL+TEECVK+   A K +  LP     
Sbjct:   119 ASIAFLDLCCGPRSRKCRNPKCKGLKKAMEFDLQLQTEECVKS--GATKEIDRLPWKGGS 176

Query:   184 E-------LQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQRKIKK 227
             E       L+AEL++MAPPNGRAVL+FR+RCGC V +LE  GPK+ R+ KK
Sbjct:   177 ESNPDYECLRAELRRMAPPNGRAVLLFRSRCGCPVAKLEGWGPKRGRRHKK 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       200   0.00087  111 3  11 22  0.45    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.05u 0.17s 19.22t   Elapsed:  00:00:01
  Total cpu time:  19.05u 0.17s 19.22t   Elapsed:  00:00:01
  Start:  Fri May 10 03:05:31 2013   End:  Fri May 10 03:05:32 2013

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.IV.30.1 hypothetical protein (229 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PF07655	98	Secretin_N_2: Secretin N-terminal domain; InterPro	88.24

>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins

Probab=88.24  E-value=0.42  Score=36.72  Aligned_cols=26  Identities=31%  Similarity=0.532  Sum_probs=22.5

Q ss_pred             CCcchhHHHHHHHhhcC--CCCCcEEEE
Q 027172          177 LPRDHHRELQAELKKMA--PPNGRAVLV  202 (227)
Q Consensus       177 Lp~d~hreLeAELrKMA--PPNGRAVLv  202 (227)
                      .--|=+++||.||+.|+  |.+||.|++
T Consensus        67 s~~dfW~~L~~~l~~ilg~~~~Gr~vv~   94 (98)
T PF07655_consen   67 SKSDFWEDLQKTLQAILGTPGDGRSVVS   94 (98)
T ss_pred             ECCchHHHHHHHHHHHhCCCCCCCEEEe
Confidence            33456899999999999  899999987

The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 57/205 (27%)

Query: 9   SVCNSIDQNMANCVNSSDAFNSKPRQNNHVYRNK-----KIPSSPNCL------KTPACD 57
            +   ID N  +  + S    S  +   H  + +     K     NCL           +
Sbjct: 204 KLLYQIDPNWTSRSDHS----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----QN 255

Query: 58  RSRFRSAAVDVVILI-----AVITACGFLLFPYIRVVSV-------KSVEVSAAVFY--- 102
              + +  +   IL+      V          +I +          +   +         
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 103 --LVKEEVIGNPLIYSSIGVSMSCVAIATWVALLCTSRKCGNPNCKGLKKAAEFDI-QLE 159
             L +E +  NP   S I  S+    +ATW           + NC  L    E  +  LE
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIR-DGLATWDNWK-------HVNCDKLTTIIESSLNVLE 367

Query: 160 TEECVKNKDSAKKGLFE----LPRD 180
             E         + +F+     P  
Sbjct: 368 PAE--------YRKMFDRLSVFPPS 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00