Citrus Sinensis ID: 027179

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MSVVSSSPILSPSSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEcccccccccccccHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHccccHHccccccccHHHHHcccccccccccccccccccccccEEEEEEcccccEcccccccccccccHHHHHHHHHHHccccccccHccccEEEEEccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msvvssspilspssgrlssnsstnlplfstsftkpisqkryplIVFSyksgtgltseDKKELLKrygldpdeflsepspktrrrkegrgsklvvsdeksqeerTTHRLLQVLGGKArrkkllspkgmdvrpmmEVVKGAAFDILqsaggcpaslrpgrwldlysgtgsVGIEAISRGCsevhfvemdpwvvsnvlipnlewtgfldvssIHTVRVETFLERAEQFCR
Flexible Loop (DISEMBL)
msvvssspilspssgrlssnsstNLPLFStsftkpisqkryPLIVFSyksgtgltsedKKELLKrygldpdeflsepspktrrrkegrgsklvvsdeksqeertthrllqvlggkarrkkllspkgmdvrpMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR
Low Complexity Region (SEG)
MsvvssspilspssgrlssnssTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR
Disordered region (IsUnstruct)
*******************************FTKPISQKRYPLIVFSYKSG*******************************************************************************PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER******
Disordered Region (DISOPRED)
**************************************************************LKRYGL******************************************VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ***
Disordered Region (DISEMBL)
*********************STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLS*****************************THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR
Disordered Region (DISPRO)
*********LSPSSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFL********************************RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVVSSSPILSPSSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
O34331	184	Putative rRNA methyltrans	yes	no	0.352	0.434	0.313	4e-05
P0ADX9	198	Ribosomal RNA small subun	N/A	no	0.370	0.424	0.318	0.0001
P0ADY0	198	Ribosomal RNA small subun	yes	no	0.370	0.424	0.318	0.0001
Q9ZD05	236	Uncharacterized methylase	yes	no	0.361	0.347	0.273	0.0004

>sp|O34331|YLBH_BACSU Putative rRNA methyltransferase YlbH OS=Bacillus subtilis (strain 168) GN=ylbH PE=3 SV=2

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++V+ G  + + L +  G   RP  + VK + F+++            GR LDL++G+G 
Sbjct: 1   MRVISGSKKGRSLKAVAGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
           +GIEA+SRG     FV+ D   +  V
Sbjct: 55  LGIEALSRGFEHCIFVDRDFKAIQTV 80

May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|P0ADX9|RSMD_ECOLI Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli (strain K12) GN=rsmD PE=1 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+ L         +   + LD ++G+G+
Sbjct: 12  IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 65

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
           +G+EA+SR  +    +EMD   VS  LI NL
Sbjct: 66  LGLEALSRYAAGATLIEMDR-AVSQQLIKNL 95

Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 1

>sp|P0ADY0|RSMD_ECOL6 Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmD PE=3 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+ L         +   + LD ++G+G+
Sbjct: 12  IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 65

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
           +G+EA+SR  +    +EMD   VS  LI NL
Sbjct: 66  LGLEALSRYAAGATLIEMDR-AVSQQLIKNL 95

Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 1

>sp|Q9ZD05|Y545_RICPR Uncharacterized methylase RP545 OS=Rickettsia prowazekii (strain Madrid E) GN=RP545 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL--RPGRWLDLYSG 165
           +L+++ GK + + + + + +  RP    +K A F IL S       L     + LDL++G
Sbjct: 1   MLKIISGKYKNQIIPTAQNIKYRPSTGKLKEAIFSILTSGEFIGNKLFNENTQILDLFAG 60

Query: 166 TGSVGIEAISRGCSEVHFVEMDPW 189
           +GS+  E++SRG      +++D +
Sbjct: 61  SGSLAFESLSRGAGFATLIDIDTY 84

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
225452620	331	PREDICTED: putative rRNA methyltransfera	0.960	0.658	0.721	5e-81
147800028	408	hypothetical protein VITISV_001039 [Viti	0.960	0.534	0.721	1e-80
224060033	321	predicted protein [Populus trichocarpa]	0.973	0.688	0.693	2e-79
449461901	315	PREDICTED: putative rRNA methyltransfera	0.885	0.638	0.708	6e-75
449519687	313	PREDICTED: putative rRNA methyltransfera	0.885	0.642	0.708	7e-75
297818452	312	hypothetical protein ARALYDRAFT_905108 [	0.960	0.698	0.608	6e-67
22331389	314	methyltransferase [Arabidopsis thaliana]	0.775	0.560	0.722	3e-65
356550476	311	PREDICTED: putative rRNA methyltransfera	0.960	0.700	0.654	3e-65
255552778	268	conserved hypothetical protein [Ricinus	0.638	0.541	0.812	6e-64
357496275	325	hypothetical protein MTR_6g009400 [Medic	0.775	0.541	0.688	6e-62

>gi|225452620|ref|XP_002281501.1| PREDICTED: putative rRNA methyltransferase ylbH [Vitis vinifera] gi|296087748|emb|CBI35004.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 166/230 (72%), Positives = 186/230 (80%), Gaps = 12/230 (5%)

Query: 4   VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
           VSSS I+SP    + +N   SS +LPLFS  F K  ++K   +++ S KS  GL +E+KK
Sbjct: 3   VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60

Query: 61  ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
            LL+RYG D +EF+SEPSPKT RRRKE    G+G +  VS E  +  RTTH+LLQVLGGK
Sbjct: 61  LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118

Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
           ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178

Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
           RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QF
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQF 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800028|emb|CAN74970.1| hypothetical protein VITISV_001039 [Vitis vinifera]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/230 (72%), Positives = 186/230 (80%), Gaps = 12/230 (5%)

Query: 4   VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
           VSSS I+SP    + +N   SS +LPLFS  F K  ++K   +++ S KS  GL +E+KK
Sbjct: 3   VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60

Query: 61  ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
            LL+RYG D +EF+SEPSPKT RRRKE    G+G +  VS E  +  RTTH+LLQVLGGK
Sbjct: 61  LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118

Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
           ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178

Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
           RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QF
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQF 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060033|ref|XP_002300031.1| predicted protein [Populus trichocarpa] gi|222847289|gb|EEE84836.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/238 (69%), Positives = 191/238 (80%), Gaps = 17/238 (7%)

Query: 3   VVSSSPILSP-----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYK-SGTGLTS 56
            +SSSPI SP     ++   SS+S  NL LF+   +KP + +   +++ SYK SG GLTS
Sbjct: 2   AISSSPIASPLGININTKLASSSSFPNLALFNLP-SKP-TNRISTIVLSSYKNSGNGLTS 59

Query: 57  EDKKELLKRYGLDPDEFLSEPSP-----KTRRRKE----GRGSKLVVSDEKSQEERTTHR 107
           EDKK L ++YGLDP++F S+PS      KT+RRKE    GRG ++   D + + +RTTHR
Sbjct: 60  EDKKALFEKYGLDPNQFPSQPSSSSPSLKTKRRKEIQNPGRGKQVREEDGEDKPQRTTHR 119

Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
           LLQVLGGKA+RKKLLSPKGMDVRPMMEVVKG+AFDILQ+AGGCPASLRPGRWLDLYSGTG
Sbjct: 120 LLQVLGGKAKRKKLLSPKGMDVRPMMEVVKGSAFDILQAAGGCPASLRPGRWLDLYSGTG 179

Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
           SVGIEAISRGCSEVHFVEMDPWVVSNVL PNLE TGFLDVS IHTVRVE+FLERAEQF
Sbjct: 180 SVGIEAISRGCSEVHFVEMDPWVVSNVLQPNLECTGFLDVSVIHTVRVESFLERAEQF 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461901|ref|XP_004148680.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis sativus]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 146/206 (70%), Positives = 165/206 (80%), Gaps = 5/206 (2%)

Query: 22  STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
           S N PL S   +KP +     +IV SYKSG    +E KK+LL++YGLDP+EFLSEPS   
Sbjct: 25  SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83

Query: 82  RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
           RR  RK G+G ++   D K Q  R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84  RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141

Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
           AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201

Query: 200 EWTGFLDVSSIHTVRVETFLERAEQF 225
           E TGF DVS IHT+RVE F+ERA+Q 
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQL 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519687|ref|XP_004166866.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis sativus]

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 146/206 (70%), Positives = 165/206 (80%), Gaps = 5/206 (2%)

Query: 22  STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
           S N PL S   +KP +     +IV SYKSG    +E KK+LL++YGLDP+EFLSEPS   
Sbjct: 25  SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83

Query: 82  RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
           RR  RK G+G ++   D K Q  R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84  RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141

Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
           AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201

Query: 200 EWTGFLDVSSIHTVRVETFLERAEQF 225
           E TGF DVS IHT+RVE F+ERA+Q 
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQL 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818452|ref|XP_002877109.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp. lyrata] gi|297322947|gb|EFH53368.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 166/235 (70%), Gaps = 17/235 (7%)

Query: 1   MSVVSSSPILSP----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTS 56
           M+V+ SSPI+SP     +  +S +S   + LF  S    I   R  ++     SGTGL S
Sbjct: 1   MAVLLSSPIVSPLGINKNLGVSYSSFPQIHLFKVSTPLRI---RKSVVSSRKNSGTGLAS 57

Query: 57  EDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE------RTTHRLLQ 110
           EDKK LL+RYG D ++     S K RR++E    K+   + +  EE      RTTHRLLQ
Sbjct: 58  EDKKLLLERYGYDANDDFGSQSKKARRKEE----KMSGRNGQQAEEVVVVQPRTTHRLLQ 113

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           VL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSGTGSVG
Sbjct: 114 VLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSGTGSVG 173

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
           IEAISRGCSE HFVEMDPWVV+NVL PNLE TGF+D S IHT RVE FLERA++ 
Sbjct: 174 IEAISRGCSEAHFVEMDPWVVTNVLQPNLEHTGFVDTSVIHTARVENFLERADKL 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331389|ref|NP_189487.2| methyltransferase [Arabidopsis thaliana] gi|9294581|dbj|BAB02862.1| unnamed protein product [Arabidopsis thaliana] gi|18389226|gb|AAL67056.1| unknown protein [Arabidopsis thaliana] gi|23296698|gb|AAN13150.1| unknown protein [Arabidopsis thaliana] gi|332643927|gb|AEE77448.1| methyltransferase [Arabidopsis thaliana]

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 142/180 (78%), Gaps = 4/180 (2%)

Query: 49  KSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKSQEERTT 105
            SGTGL SEDKK LL+RYG D ++     S K RR++E   GR S+ V       + RTT
Sbjct: 52  NSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQVEE-VVVVQPRTT 110

Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
           HRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSG
Sbjct: 111 HRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSG 170

Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
           TGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FLERA++ 
Sbjct: 171 TGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFLERADKL 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550476|ref|XP_003543613.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Glycine max]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/226 (65%), Positives = 166/226 (73%), Gaps = 8/226 (3%)

Query: 9   ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
           +L P+   L  N+ T+   P F        S    PL V   KSG GL SEDKK LL++Y
Sbjct: 4   LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSPTSSPLFVSYTKSGNGLASEDKKILLEKY 63

Query: 67  G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
           G  +D DE+ S+ S K++RRKE    RG K V    E  +  R TH+LLQVLGG ARR K
Sbjct: 64  GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123

Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
           LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGRWLDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRWLDLYSGTGSVGIEALSRGCSQ 183

Query: 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFC 226
           VHFVEMDPWVVS+VL PNLE TGFLD S IHTVRVE F ERAEQF 
Sbjct: 184 VHFVEMDPWVVSDVLRPNLEETGFLDASVIHTVRVEKFFERAEQFV 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552778|ref|XP_002517432.1| conserved hypothetical protein [Ricinus communis] gi|223543443|gb|EEF44974.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 134/149 (89%), Gaps = 4/149 (2%)

Query: 80  KTRRRKEGRGS---KLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVV 136
           +++R+KEG+ +   K VV++E ++  RTTHRLLQV GGKA+RKKLLSP GMDVRPMMEVV
Sbjct: 18  RSKRKKEGKNAGKGKQVVAEE-AKPPRTTHRLLQVFGGKAKRKKLLSPMGMDVRPMMEVV 76

Query: 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196
           KG AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 
Sbjct: 77  KGCAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLQ 136

Query: 197 PNLEWTGFLDVSSIHTVRVETFLERAEQF 225
           PNLE TGFLDVS +HTVRVE FLERAEQF
Sbjct: 137 PNLESTGFLDVSVVHTVRVENFLERAEQF 165

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496275|ref|XP_003618426.1| hypothetical protein MTR_6g009400 [Medicago truncatula] gi|355493441|gb|AES74644.1| hypothetical protein MTR_6g009400 [Medicago truncatula]

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 126/183 (68%), Positives = 143/183 (78%), Gaps = 7/183 (3%)

Query: 51  GTGLTSEDKKELLKRYG--LDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
           G GL SE+KK LL+RYG  +D D++  + S         +++ RG K V     + +  R
Sbjct: 54  GNGLASEEKKILLERYGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113

Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
           TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173

Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
           SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233

Query: 224 QFC 226
           QF 
Sbjct: 234 QFV 236

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2088947	314	AT3G28460 [Arabidopsis thalian	0.792	0.573	0.718	1.4e-62
UNIPROTKB|Q74DS1	187	GSU1244 "DNA methyltransferase	0.431	0.524	0.431	6.2e-14
TIGR_CMR|GSU_1244	187	GSU_1244 "methyltransferase, p	0.431	0.524	0.431	6.2e-14
TIGR_CMR|DET_0189	192	DET_0189 "methyltransferase, p	0.444	0.526	0.308	6.6e-10
UNIPROTKB|Q3AC42	184	CHY_1460 "Putative methyltrans	0.400	0.494	0.377	1.8e-09
TIGR_CMR|CHY_1460	184	CHY_1460 "putative methyltrans	0.400	0.494	0.377	1.8e-09
UNIPROTKB|Q2GEK0	198	NSE_0201 "Putative methyltrans	0.348	0.398	0.379	6.3e-09
TIGR_CMR|NSE_0201	198	NSE_0201 "putative methyltrans	0.348	0.398	0.379	6.3e-09
UNIPROTKB|Q2GHP9	183	ECH_0211 "Putative methyltrans	0.497	0.617	0.279	1.7e-07
TIGR_CMR|ECH_0211	183	ECH_0211 "putative methyltrans	0.497	0.617	0.279	1.7e-07

TAIR|locus:2088947 AT3G28460 [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 133/185 (71%), Positives = 147/185 (79%)

Query:    44 IVFSYK-SGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKS 99
             +V S K SGTGL SEDKK LL+RYG D ++     S K RR++E   GR S+ V  +   
Sbjct:    46 VVSSRKNSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQV-EEVVV 104

Query:   100 QEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW 159
              + RTTHRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRW
Sbjct:   105 VQPRTTHRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRW 164

Query:   160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
             LDLYSGTGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FL
Sbjct:   165 LDLYSGTGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFL 224

Query:   220 ERAEQ 224
             ERA++
Sbjct:   225 ERADK 229

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031167 "rRNA methylation" evidence=IEA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

UNIPROTKB|Q74DS1 GSU1244 "DNA methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 44/102 (43%), Positives = 64/102 (62%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++V+GG AR ++L +P+G  VRP  + +K A F+IL S           R LDL++GTG+
Sbjct:     1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
             +GIEA+SRGCSE  FV+     V+ V+  NL+  GF D + I
Sbjct:    58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARI 98

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1244 GSU_1244 "methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 44/102 (43%), Positives = 64/102 (62%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++V+GG AR ++L +P+G  VRP  + +K A F+IL S           R LDL++GTG+
Sbjct:     1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
             +GIEA+SRGCSE  FV+     V+ V+  NL+  GF D + I
Sbjct:    58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARI 98

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|DET_0189 DET_0189 "methyltransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/107 (30%), Positives = 61/107 (57%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++++ G A+ K ++ P+    RP  E+V+GA   +L++     + +     LD+YSG+GS
Sbjct:     1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAEDWSEV-----LDIYSGSGS 55

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
             +G+EA+SRG   V FVE +     +++  NLE  G    + ++ + V
Sbjct:    56 LGLEALSRGAGHVDFVEHER-ACCDIIKQNLETIGCAGQAHVYCLDV 101

GO:0008152 "metabolic process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q3AC42 CHY_1460 "Putative methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 37/98 (37%), Positives = 58/98 (59%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++++ G AR +KL++PKG+  RP  + VK A F+IL       A +     LD ++GTG+
Sbjct:     1 MRIITGDARGRKLIAPKGLKTRPTSDRVKEAMFNIL-GYRVIDAVV-----LDGFAGTGN 54

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
             +G+EA+SRG    +F+E D    S  L  N+E  G+ D
Sbjct:    55 LGLEALSRGAKFSYFIEADREAFS-CLRRNIENLGYGD 91

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1460 CHY_1460 "putative methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 37/98 (37%), Positives = 58/98 (59%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++++ G AR +KL++PKG+  RP  + VK A F+IL       A +     LD ++GTG+
Sbjct:     1 MRIITGDARGRKLIAPKGLKTRPTSDRVKEAMFNIL-GYRVIDAVV-----LDGFAGTGN 54

Query:   169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
             +G+EA+SRG    +F+E D    S  L  N+E  G+ D
Sbjct:    55 LGLEALSRGAKFSYFIEADREAFS-CLRRNIENLGYGD 91

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q2GEK0 NSE_0201 "Putative methyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 139 (54.0 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 30/79 (37%), Positives = 50/79 (63%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++V+ GK + +K+   KG+++RP M  V+ A F+I+  A           +LDL++GTGS
Sbjct:     1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60

Query:   169 VGIEAISRGCSEVHFVEMD 187
             V IEA+SRG + V  +++D
Sbjct:    61 VSIEALSRGFASVTAIDID 79

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|NSE_0201 NSE_0201 "putative methyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 139 (54.0 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 30/79 (37%), Positives = 50/79 (63%)

Query:   109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
             ++V+ GK + +K+   KG+++RP M  V+ A F+I+  A           +LDL++GTGS
Sbjct:     1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60

Query:   169 VGIEAISRGCSEVHFVEMD 187
             V IEA+SRG + V  +++D
Sbjct:    61 VSIEALSRGFASVTAIDID 79

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q2GHP9 ECH_0211 "Putative methyltransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 128 (50.1 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 33/118 (27%), Positives = 66/118 (55%)

Query:   108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
             +L++  GK R +++ S K +  RP M +++ + F+I+ S      S++  + LDL+ G+G
Sbjct:     1 MLRITSGKYRGRRIFSDKLLSARPAMSIIRESIFNIILSR----MSIQGCKILDLFCGSG 56

Query:   168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
             S+  EA+SRG   V  V+++ + +S V   + E+ G ++  ++    VE      +Q+
Sbjct:    57 SLSFEALSRGAESVLLVDINHYNLSLVKRTS-EYLGVVNNVTLMCCDVEKLPLATDQY 113

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_0211 ECH_0211 "putative methyltransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 128 (50.1 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 33/118 (27%), Positives = 66/118 (55%)

Query:   108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
             +L++  GK R +++ S K +  RP M +++ + F+I+ S      S++  + LDL+ G+G
Sbjct:     1 MLRITSGKYRGRRIFSDKLLSARPAMSIIRESIFNIILSR----MSIQGCKILDLFCGSG 56

Query:   168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
             S+  EA+SRG   V  V+++ + +S V   + E+ G ++  ++    VE      +Q+
Sbjct:    57 SLSFEALSRGAESVLLVDINHYNLSLVKRTS-EYLGVVNNVTLMCCDVEKLPLATDQY 113

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I0836 hypothetical protein (321 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
pfam03602	183	pfam03602, Cons_hypoth95, Conserved hypothetical p	6e-34
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	1e-23
TIGR00095	190	TIGR00095, TIGR00095, RNA methyltransferase, RsmD	2e-16
PRK10909	199	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferas	7e-06

>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95

 Score =  119 bits (301), Expect = 6e-34
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 8/116 (6%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GGKAR +KL  P G   RP  + V+ A F+IL         +   R LDL++G+G+
Sbjct: 1   MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNILAPY----FEIGGARVLDLFAGSGA 56

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
           +G+EA+SRG + V FVE D   V+  L  NLE    L +     V          +
Sbjct: 57  LGLEALSRGAASVVFVEKDKKAVA-TLKENLE---ALGLEGETAVLRNDAARALLR 108

Length = 183

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 93.1 bits (232), Expect = 1e-23
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           ++GGK + +KL +P G   RP  + V+ A F+IL      P  +   R LDL++G+G++G
Sbjct: 4   IIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILA-----PDEIEGARVLDLFAGSGALG 58

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
           +EA+SRG + V FVE D   V  +L  NL+  G    + +        L++ 
Sbjct: 59  LEALSRGAARVVFVEKDRKAVK-ILKENLKALGLEGEARVLRNDALRALKQL 109

Length = 187

>gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 7/92 (7%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P G   RP  + V+ + F+IL+        +    +LDL++G+G+
Sbjct: 10  IRIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILR------PDIVGAHFLDLFAGSGA 63

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
           +G+EA+SRG +   FVE D   V+  L  NL 
Sbjct: 64  LGLEALSRGAASAVFVEQDR-KVAQTLKENLS 94

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases [Protein synthesis, tRNA and rRNA base modification]. Length = 190

>gnl|CDD|236793 PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+ L         +   R LD ++G+G+
Sbjct: 13  IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLA------PVIVDARCLDCFAGSGA 66

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
           +G+EA+SR  +    +EMD   V+  LI NL
Sbjct: 67  LGLEALSRYAAGATLLEMDR-AVAQQLIKNL 96

Length = 199

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.92
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.91
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.91
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.86
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.68
COG2890	280	HemK Methylase of polypeptide chain release factor	99.66
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.62
KOG2904	328	consensus Predicted methyltransferase [General fun	99.6
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.59
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.59
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.58
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.56
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.46
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.45
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.44
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.44
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.43
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.41
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.39
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.34
PLN02672	1082	methionine S-methyltransferase	99.33
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.3
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.3
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.29
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.29
COG4123	248	Predicted O-methyltransferase [General function pr	99.28
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.27
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.26
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.26
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.25
PRK07402	196	precorrin-6B methylase; Provisional	99.24
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.24
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.24
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.23
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.2
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.19
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.18
COG2520	341	Predicted methyltransferase [General function pred	99.17
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.17
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.14
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.14
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.14
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.13
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.12
PRK14967	223	putative methyltransferase; Provisional	99.12
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.11
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.07
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.99
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.99
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.98
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.97
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.97
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.95
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.94
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.93
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.93
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.93
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.92
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.92
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.88
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.87
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.85
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.85
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.84
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.84
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.83
KOG2730	263	consensus Methylase [General function prediction o	98.82
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.81
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.81
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.8
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.78
PRK11207	197	tellurite resistance protein TehB; Provisional	98.78
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.77
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.77
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.76
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.75
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.75
PLN02476	278	O-methyltransferase	98.74
PRK14968	188	putative methyltransferase; Provisional	98.74
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.73
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.73
PLN02244	340	tocopherol O-methyltransferase	98.73
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.71
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.68
PRK12335	287	tellurite resistance protein TehB; Provisional	98.67
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.65
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.65
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.65
PLN02336	475	phosphoethanolamine N-methyltransferase	98.65
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.63
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.63
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.62
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.61
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.59
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.58
PRK04457	262	spermidine synthase; Provisional	98.58
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.58
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.57
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.57
COG4076	252	Predicted RNA methylase [General function predicti	98.57
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.56
PRK00811	283	spermidine synthase; Provisional	98.54
PRK04266	226	fibrillarin; Provisional	98.53
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.53
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.53
PRK10742	250	putative methyltransferase; Provisional	98.51
TIGR03438	301	probable methyltransferase. This model represents	98.51
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.51
PRK08317	241	hypothetical protein; Provisional	98.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.49
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.49
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.49
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.49
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.48
PHA03412	241	putative methyltransferase; Provisional	98.48
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.48
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.45
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.45
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.44
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.43
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.43
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.42
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.41
PHA03411	279	putative methyltransferase; Provisional	98.41
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.41
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.39
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.38
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.37
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.36
PLN02490	340	MPBQ/MSBQ methyltransferase	98.35
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.35
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.34
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.34
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.34
PLN02366	308	spermidine synthase	98.33
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.33
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.32
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.32
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.31
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.31
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.31
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.3
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.28
PRK04148	134	hypothetical protein; Provisional	98.26
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.26
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.26
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.24
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.24
COG3897	218	Predicted methyltransferase [General function pred	98.22
PRK03612	521	spermidine synthase; Provisional	98.21
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.19
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.19
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.19
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.17
KOG1271	227	consensus Methyltransferases [General function pre	98.17
PRK05785	226	hypothetical protein; Provisional	98.15
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.15
COG4122	219	Predicted O-methyltransferase [General function pr	98.15
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.15
PLN03075	296	nicotianamine synthase; Provisional	98.14
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.13
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.13
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.12
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.11
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.1
PRK06202	232	hypothetical protein; Provisional	98.05
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.04
KOG1227	351	consensus Putative methyltransferase [General func	98.03
PRK06922	677	hypothetical protein; Provisional	98.02
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.01
PLN02336	475	phosphoethanolamine N-methyltransferase	97.99
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.98
KOG2078	495	consensus tRNA modification enzyme [RNA processing	97.98
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.98
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.97
PTZ00146	293	fibrillarin; Provisional	97.95
PLN02823	336	spermine synthase	97.94
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.91
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.89
COG2521	287	Predicted archaeal methyltransferase [General func	97.88
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.87
PRK01581	374	speE spermidine synthase; Validated	97.81
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.79
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.78
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.76
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.76
PHA01634	156	hypothetical protein	97.75
PF13679	141	Methyltransf_32: Methyltransferase domain	97.74
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.68
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.67
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.64
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.63
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.63
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.61
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.61
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.59
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.57
PRK11524	284	putative methyltransferase; Provisional	97.54
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.52
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.48
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.46
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.46
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.43
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.42
KOG2899	288	consensus Predicted methyltransferase [General fun	97.4
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.37
PRK13699	227	putative methylase; Provisional	97.37
TIGR00438	188	rrmJ cell division protein FtsJ.	97.31
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.3
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.24
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.1
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.07
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.03
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.02
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.96
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.91
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.85
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.84
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.79
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.74
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.68
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.65
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.64
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.6
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.59
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.38
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.33
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.32
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.29
PRK10458	467	DNA cytosine methylase; Provisional	96.28
KOG3010	261	consensus Methyltransferase [General function pred	96.09
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.05
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.74
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.63
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.29
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.27
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	95.23
KOG4300	252	consensus Predicted methyltransferase [General fun	95.11
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	94.89
COG4262	508	Predicted spermidine synthase with an N-terminal m	94.85
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	94.56
COG0286	489	HsdM Type I restriction-modification system methyl	94.53
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	94.39
COG0863	302	DNA modification methylase [DNA replication, recom	94.31
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.3
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	93.96
KOG2671	421	consensus Putative RNA methylase [Replication, rec	93.07
KOG2361	264	consensus Predicted methyltransferase [General fun	92.29
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	92.28
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	92.23
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	92.1
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	91.95
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	91.95
KOG2920	282	consensus Predicted methyltransferase [General fun	91.86
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	91.76
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	91.61
PRK00536	262	speE spermidine synthase; Provisional	91.31
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	90.77
KOG3115	249	consensus Methyltransferase-like protein [General	90.68
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	90.66
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	90.15
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	90.09
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	89.72
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	89.32
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	89.1
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	88.97
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	88.6
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	88.41
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	86.56
KOG2912	419	consensus Predicted DNA methylase [Function unknow	85.47
COG1565	370	Uncharacterized conserved protein [Function unknow	84.96
COG1568	354	Predicted methyltransferases [General function pre	84.74
KOG2940	325	consensus Predicted methyltransferase [General fun	83.69
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	83.48
TIGR00497	501	hsdM type I restriction system adenine methylase (	83.09
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	82.38
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	82.02
KOG3924	419	consensus Putative protein methyltransferase invol	82.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	81.75
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	81.67
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	81.56

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.92  E-value=4.3e-25  Score=187.49  Aligned_cols=108  Identities=37%  Similarity=0.620  Sum_probs=90.6

Q ss_pred             EEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCH
Q 027179          109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP  188 (227)
Q Consensus       109 L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~  188 (227)
                      ||||+|+|+|++|.+|++..+|||++.|+|++|+||+.. .    .++.+|||||||||++|+||++|||.+|++||.|+
T Consensus         1 mRIi~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~-~----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~   75 (183)
T PF03602_consen    1 MRIIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPR-N----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR   75 (183)
T ss_dssp             EE--SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H
T ss_pred             CEEEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhccc-c----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH
Confidence            799999999999999999999999999999999999864 1    47899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       189 ~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      .++ +.+++|++..++.++++++++|++.++.+.
T Consensus        76 ~a~-~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~  108 (183)
T PF03602_consen   76 KAI-KIIKKNLEKLGLEDKIRVIKGDAFKFLLKL  108 (183)
T ss_dssp             HHH-HHHHHHHHHHT-GGGEEEEESSHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhCCCcceeeeccCHHHHHHhh
Confidence            999 999999999999888999999999999876

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.91  E-value=3.2e-24  Score=183.43  Aligned_cols=109  Identities=34%  Similarity=0.571  Sum_probs=102.7

Q ss_pred             eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHh-cCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeC
Q 027179          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~-~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEi  186 (227)
                      +|+||+|+|+|++|.+|++..+|||++.|+|++|+|+.. +      .++.+|||||||||++|+||++|||.+|++||.
T Consensus         1 ~mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~------i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~   74 (187)
T COG0742           1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPDE------IEGARVLDLFAGSGALGLEALSRGAARVVFVEK   74 (187)
T ss_pred             CeEEEeccccCCcccCCCCCCcCCCchHHHHHHHHhccccc------cCCCEEEEecCCccHhHHHHHhCCCceEEEEec
Confidence            589999999999999999999999999999999999986 3      689999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       187 s~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~  223 (227)
                      |..|+ ..+++|++..++..+.+++..|+..+|+.+.
T Consensus        75 ~~~a~-~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~  110 (187)
T COG0742          75 DRKAV-KILKENLKALGLEGEARVLRNDALRALKQLG  110 (187)
T ss_pred             CHHHH-HHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence            99999 9999999999988889999999998877653

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.91  E-value=2e-23  Score=177.64  Aligned_cols=112  Identities=25%  Similarity=0.331  Sum_probs=104.0

Q ss_pred             cccceEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEE
Q 027179          104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHF  183 (227)
Q Consensus       104 ~~~~~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~a  183 (227)
                      +.+++++|++|+++|++|..|++...|||++.+++++|+++...      .++.+|||||||||++|++++++|+.+|++
T Consensus         4 ~~~~~~rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~------~~g~~vLDLfaGsG~lglea~srga~~v~~   77 (189)
T TIGR00095         4 SGSKKRIIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPE------IQGAHLLDVFAGSGLLGEEALSRGAKVAFL   77 (189)
T ss_pred             CCCceEEEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHh------cCCCEEEEecCCCcHHHHHHHhCCCCEEEE
Confidence            44789999999999999999999999999999999999999753      578899999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          184 VEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       184 VEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ||.++.++ +.+++|++.+++.++++++++|+++++..+
T Consensus        78 vE~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~  115 (189)
T TIGR00095        78 EEDDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFL  115 (189)
T ss_pred             EeCCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHh
Confidence            99999999 999999999999778999999999988654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.86  E-value=3.7e-21  Score=165.57  Aligned_cols=106  Identities=29%  Similarity=0.480  Sum_probs=97.4

Q ss_pred             eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCC
Q 027179          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD  187 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis  187 (227)
                      .|+|++|+|+|++|.+|++..+||+++.+++++|+++...      .++.+|||||||||.++++++++++.+|++||++
T Consensus        12 ~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~   85 (199)
T PRK10909         12 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMD   85 (199)
T ss_pred             CEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECC
Confidence            5999999999999999999999999999999999998642      3567999999999999999888888899999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       188 ~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ++++ +.+++|++.+++. +++++++|+++++..
T Consensus        86 ~~a~-~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~  117 (199)
T PRK10909         86 RAVA-QQLIKNLATLKAG-NARVVNTNALSFLAQ  117 (199)
T ss_pred             HHHH-HHHHHHHHHhCCC-cEEEEEchHHHHHhh
Confidence            9999 9999999999985 699999999998754

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.68  E-value=6.6e-17  Score=155.99  Aligned_cols=164  Identities=15%  Similarity=0.118  Sum_probs=116.4

Q ss_pred             eccCCCCC--ChHHHH-HHHHHcCCCCccccCCCCCcccccccCCCCcccccc-ccccccccccceEEEEecc--cCCee
Q 027179           47 SYKSGTGL--TSEDKK-ELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSD-EKSQEERTTHRLLQVLGGK--ARRKK  120 (227)
Q Consensus        47 ~~~~~~~~--~~~~~~-~~~~~~G~~~~~~~~~~l~~~er~~~~~~~~~~~~~-~~~~~~~~~~~~L~ii~G~--~~Gr~  120 (227)
                      ..+.++|+  |..|.. .+.+..|++...+...    .++-    -+.++... .+...+|..+.+||||.|+  |+|++
T Consensus        14 ~~l~~~g~~~~~~~a~~Ll~~~l~~~~~~l~~~----~~~~----l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~   85 (506)
T PRK01544         14 DKLNKIGISSPQLEARILLQHVINKPIEYLLIN----LDEQ----LNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSRE   85 (506)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCcCHHHHhhc----cCCC----CCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcE
Confidence            34667887  445555 4444446665333221    0000    11112222 3356778889999999995  89999


Q ss_pred             ecCCCCC-CCCCCHHHHHHHHHHHHHhcCC---------------CC--CCCCCCeEEEeccCCCHHHHHHHHc-CCCEE
Q 027179          121 LLSPKGM-DVRPMMEVVKGAAFDILQSAGG---------------CP--ASLRPGRWLDLYSGTGSVGIEAISR-GCSEV  181 (227)
Q Consensus       121 L~v~~g~-~~RPtte~v~ealf~~L~~~~~---------------~~--~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V  181 (227)
                      |.+.++. +|||+||.+++.+++.+....+               ..  ...++.+|||+|||||.+++.+++. +..+|
T Consensus        86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v  165 (506)
T PRK01544         86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV  165 (506)
T ss_pred             EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence            9997775 8999999999998876541000               00  0113468999999999999998864 45689


Q ss_pred             EEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       182 ~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      +++|+|+.|+ +.+++|++.+++.++++++++|+++.+
T Consensus       166 ~avDis~~al-~~A~~N~~~~~l~~~v~~~~~D~~~~~  202 (506)
T PRK01544        166 IATDISLDAI-EVAKSNAIKYEVTDRIQIIHSNWFENI  202 (506)
T ss_pred             EEEECCHHHH-HHHHHHHHHcCCccceeeeecchhhhC
Confidence            9999999999 999999999999888999999987754

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=2e-16  Score=142.45  Aligned_cols=112  Identities=24%  Similarity=0.277  Sum_probs=93.5

Q ss_pred             cccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc
Q 027179          100 QEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR  176 (227)
Q Consensus       100 ~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~  176 (227)
                      ..+|..+.+++||.|.  |+|.+|.+.++. +|||.|+.+.+.+...+..       ... +|||+|||||++++.+++.
T Consensus        60 ~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~-------~~~-~ilDlGTGSG~iai~la~~  131 (280)
T COG2890          60 LERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQ-------LDK-RILDLGTGSGAIAIALAKE  131 (280)
T ss_pred             HHHHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhh-------cCC-cEEEecCChHHHHHHHHhh
Confidence            4455668899999995  899999998875 8999999999887633322       112 7999999999999999887


Q ss_pred             CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          177 GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       177 Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .. ..|+++|+|+.|+ ++|++|++.|++ .++.++++|+++.++.
T Consensus       132 ~~~~~V~a~Dis~~Al-~~A~~Na~~~~l-~~~~~~~~dlf~~~~~  175 (280)
T COG2890         132 GPDAEVIAVDISPDAL-ALARENAERNGL-VRVLVVQSDLFEPLRG  175 (280)
T ss_pred             CcCCeEEEEECCHHHH-HHHHHHHHHcCC-ccEEEEeeecccccCC
Confidence            54 5899999999999 999999999999 5688888899887654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.62  E-value=1.1e-15  Score=136.80  Aligned_cols=114  Identities=19%  Similarity=0.084  Sum_probs=96.2

Q ss_pred             ccccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179           99 SQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (227)
Q Consensus        99 ~~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas  175 (227)
                      ...+|....+++||.|.  |+|++|.+.++. .|||+|+.+++.+++.+...      ....+|||+|||||.+++.++.
T Consensus        61 ~~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~------~~~~~vLDlG~GsG~i~l~la~  134 (284)
T TIGR00536        61 LVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQ------NPILHILDLGTGSGCIALALAY  134 (284)
T ss_pred             HHHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhc------CCCCEEEEEeccHhHHHHHHHH
Confidence            35566667899999995  889999998775 79999999999988766421      1236899999999999999987


Q ss_pred             cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          176 RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       176 ~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .. ..+|+++|+|+.++ +.+++|++.+++.++++++++|+++.+
T Consensus       135 ~~~~~~v~avDis~~al-~~a~~n~~~~~~~~~v~~~~~d~~~~~  178 (284)
T TIGR00536       135 EFPNAEVIAVDISPDAL-AVAEENAEKNQLEHRVEFIQSNLFEPL  178 (284)
T ss_pred             HCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhccC
Confidence            54 35899999999999 999999999999777999999998755

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.60  E-value=3.1e-15  Score=135.00  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=91.3

Q ss_pred             ccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-
Q 027179          101 EERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-  176 (227)
Q Consensus       101 ~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-  176 (227)
                      ..|-.+-+||||.|+  |++.+|.+.+|. +|||+||+.++++.+.+.+...    ..+..+||+|||||++++.+++. 
T Consensus        95 ~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~----~~~~~ildlgtGSGaIslsll~~L  170 (328)
T KOG2904|consen   95 LQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEH----SKHTHILDLGTGSGAISLSLLHGL  170 (328)
T ss_pred             HHHHhcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhh----cccceEEEecCCccHHHHHHHhcC
Confidence            344557899999996  678888887775 8999999999999988876422    45568999999999999999874 


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       177 Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      +...|+|||.++.|+ .++.+|++++++.+++.+++
T Consensus       171 ~~~~v~AiD~S~~Ai-~La~eN~qr~~l~g~i~v~~  205 (328)
T KOG2904|consen  171 PQCTVTAIDVSKAAI-KLAKENAQRLKLSGRIEVIH  205 (328)
T ss_pred             CCceEEEEeccHHHH-HHHHHHHHHHhhcCceEEEe
Confidence            566899999999999 99999999999999999884

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.59  E-value=2.8e-15  Score=132.57  Aligned_cols=111  Identities=21%  Similarity=0.188  Sum_probs=92.0

Q ss_pred             ccccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179           99 SQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (227)
Q Consensus        99 ~~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas  175 (227)
                      +..+|..+.+||||.|.  |+|++|.+.++. ++|+.|+.+.+.+..++...      ..+.+|||+|||||.+++.++.
T Consensus        33 ~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~------~~~~~vLDlg~GsG~i~l~la~  106 (251)
T TIGR03704        33 MVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPR------SGTLVVVDLCCGSGAVGAALAA  106 (251)
T ss_pred             HHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhccc------CCCCEEEEecCchHHHHHHHHH
Confidence            35677778999999995  789999998875 69999999998887766431      2345899999999999999886


Q ss_pred             c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          176 R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       176 ~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      . +..+|++||+|+.|+ +.+++|++.|+.    +++++|+++++.
T Consensus       107 ~~~~~~v~~vDis~~al-~~A~~N~~~~~~----~~~~~D~~~~l~  147 (251)
T TIGR03704       107 ALDGIELHAADIDPAAV-RCARRNLADAGG----TVHEGDLYDALP  147 (251)
T ss_pred             hCCCCEEEEEECCHHHH-HHHHHHHHHcCC----EEEEeechhhcc
Confidence            4 345899999999999 999999998873    689999987664

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.59  E-value=4.1e-15  Score=133.70  Aligned_cols=113  Identities=20%  Similarity=0.192  Sum_probs=93.7

Q ss_pred             cccccc-ccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCeEEEeccCCCHHHHHH
Q 027179           99 SQEERT-THRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEA  173 (227)
Q Consensus        99 ~~~~~~-~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~-~L~~~~~~~~~~~~~~VLDLgsGTG~isI~a  173 (227)
                      ...+|. .+.++|||.|+  |.|++|.+.++. ++||.++.+.+..+. ++..       ..+.+|||+|||||.+++.+
T Consensus        67 ~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~vLDlG~GsG~i~~~l  139 (284)
T TIGR03533        67 LIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEP-------EPVKRILDLCTGSGCIAIAC  139 (284)
T ss_pred             HHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhcc-------CCCCEEEEEeCchhHHHHHH
Confidence            355665 57799999996  789999997764 799999988877654 3421       23568999999999999999


Q ss_pred             HHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          174 ISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       174 as~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      +... ..+|+++|+|+.++ +.+++|++.+++.++++++++|+++.+
T Consensus       140 a~~~~~~~v~avDis~~al-~~A~~n~~~~~~~~~i~~~~~D~~~~~  185 (284)
T TIGR03533       140 AYAFPEAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIQSDLFAAL  185 (284)
T ss_pred             HHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhcc
Confidence            8753 35899999999999 999999999999878999999998755

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.58  E-value=8.1e-15  Score=138.90  Aligned_cols=108  Identities=17%  Similarity=0.109  Sum_probs=92.8

Q ss_pred             ccccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179           99 SQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (227)
Q Consensus        99 ~~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas  175 (227)
                      ...+|..++++|||.|.  |+|++|.+.++. +|||+|+.+++.+++.+.         ++.+|||+|||||.+++.++.
T Consensus       201 ~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---------~~~rVLDLGcGSG~IaiaLA~  271 (423)
T PRK14966        201 LAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---------ENGRVWDLGTGSGAVAVTVAL  271 (423)
T ss_pred             HHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---------CCCEEEEEeChhhHHHHHHHH
Confidence            46678889999999995  899999997664 899999999988876543         345899999999999999886


Q ss_pred             c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          176 R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       176 ~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      . ...+|+++|+|+.|+ +.+++|++.++.  +++++++|+++.
T Consensus       272 ~~p~a~VtAVDiS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~  312 (423)
T PRK14966        272 ERPDAFVRASDISPPAL-ETARKNAADLGA--RVEFAHGSWFDT  312 (423)
T ss_pred             hCCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEcchhcc
Confidence            4 456899999999999 999999999885  699999998764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.56  E-value=1e-14  Score=132.67  Aligned_cols=113  Identities=20%  Similarity=0.192  Sum_probs=93.6

Q ss_pred             cccccc-ccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCeEEEeccCCCHHHHHH
Q 027179           99 SQEERT-THRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEA  173 (227)
Q Consensus        99 ~~~~~~-~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~-~L~~~~~~~~~~~~~~VLDLgsGTG~isI~a  173 (227)
                      ...+|. .+.++|||.|+  |+|++|.+.++. +|||.++.+.+..+. ++..       ....+|||+|||+|.+++.+
T Consensus        79 ~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~VLDlG~GsG~iai~l  151 (307)
T PRK11805         79 LIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED-------PPVTRILDLCTGSGCIAIAC  151 (307)
T ss_pred             HHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc-------CCCCEEEEEechhhHHHHHH
Confidence            356665 57899999995  789999997664 799999988877664 3332       12368999999999999999


Q ss_pred             HHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          174 ISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       174 as~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      +.. ...+|+++|+|+.++ +.+++|++.+++.++++++++|+++.+
T Consensus       152 a~~~p~~~V~avDis~~al-~~A~~n~~~~~l~~~i~~~~~D~~~~l  197 (307)
T PRK11805        152 AYAFPDAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIESDLFAAL  197 (307)
T ss_pred             HHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCcEEEEECchhhhC
Confidence            875 346899999999999 999999999999878999999998765

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.46  E-value=1.6e-13  Score=124.85  Aligned_cols=75  Identities=24%  Similarity=0.310  Sum_probs=63.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      |.+.+|||.+..+.+-...         .++++|||+|||||.++|.|++.|+++|+++|+||.|+ +.+++|++.|++.
T Consensus       141 GTG~H~TT~lcl~~l~~~~---------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~  210 (295)
T PF06325_consen  141 GTGHHPTTRLCLELLEKYV---------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVE  210 (295)
T ss_dssp             -SSHCHHHHHHHHHHHHHS---------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-T
T ss_pred             cCCCCHHHHHHHHHHHHhc---------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCC
Confidence            4679999999887764332         46789999999999999999999999999999999999 9999999999998


Q ss_pred             CcEEE
Q 027179          206 DVSSI  210 (227)
Q Consensus       206 ~~v~~  210 (227)
                      +++.+
T Consensus       211 ~~~~v  215 (295)
T PF06325_consen  211 DRIEV  215 (295)
T ss_dssp             TCEEE
T ss_pred             eeEEE
Confidence            87655

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.45  E-value=2.4e-13  Score=128.03  Aligned_cols=70  Identities=29%  Similarity=0.313  Sum_probs=65.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHHhh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~~~  224 (227)
                      ..+++||||||+||.+|+.||..||.+||.||+|..++ +++++|++.||++ +++.++++|++++|+++++
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~  286 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGDRHRFIVGDVFKWLRKAER  286 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCccceeeehhhHHHHHHHHHh
Confidence            35889999999999999999999999999999999999 9999999999996 6789999999999999876

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.44  E-value=4.6e-13  Score=114.77  Aligned_cols=84  Identities=20%  Similarity=0.167  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~  209 (227)
                      +|.+.++...++.|..       .++.++||+|||||+++++++..+ ..+|+++|.+++++ +.+++|++++|++ +++
T Consensus        17 ~TK~EIRal~ls~L~~-------~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~~-n~~   87 (187)
T COG2242          17 MTKEEIRALTLSKLRP-------RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGVD-NLE   87 (187)
T ss_pred             CcHHHHHHHHHHhhCC-------CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCC-cEE
Confidence            6889999888888876       478899999999999999998543 46899999999999 9999999999975 799


Q ss_pred             EEEccHHHHHHHHh
Q 027179          210 IHTVRVETFLERAE  223 (227)
Q Consensus       210 ~i~gDa~~~L~~~~  223 (227)
                      ++.+|+.+.|.++.
T Consensus        88 vv~g~Ap~~L~~~~  101 (187)
T COG2242          88 VVEGDAPEALPDLP  101 (187)
T ss_pred             EEeccchHhhcCCC
Confidence            99999999998754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=7.2e-13  Score=113.98  Aligned_cols=86  Identities=23%  Similarity=0.196  Sum_probs=69.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      ..+.+|...++..++..+...+    +.+++.|+|||||||.+++.++..|+.+|+|||+|++|+ +.+++|+..++  .
T Consensus        21 LEQY~Tp~~~Aa~il~~a~~~g----~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~--g   93 (198)
T COG2263          21 LEQYRTPAPLAAYILWVAYLRG----DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELL--G   93 (198)
T ss_pred             ceecCCChHHHHHHHHHHHHcC----CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhC--C
Confidence            3455555555555544443433    478899999999999999999999999999999999999 99999999943  4


Q ss_pred             cEEEEEccHHHHH
Q 027179          207 VSSIHTVRVETFL  219 (227)
Q Consensus       207 ~v~~i~gDa~~~L  219 (227)
                      +++++.+|+.++-
T Consensus        94 ~v~f~~~dv~~~~  106 (198)
T COG2263          94 DVEFVVADVSDFR  106 (198)
T ss_pred             ceEEEEcchhhcC
Confidence            6999999998753

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.43  E-value=5.6e-13  Score=110.77  Aligned_cols=93  Identities=22%  Similarity=0.322  Sum_probs=78.9

Q ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHH
Q 027179          119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       119 r~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~-~V~aVEis~~Al~~~ar~  197 (227)
                      .+|...+|.+.++..+.-.+.+.+++...       .+.+|||+|||+|.+|+.++..+.. +|+++|+|+.|+ +.+++
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~   73 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKR   73 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHH
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHH
Confidence            35667788888888877777777777652       5679999999999999999987654 799999999999 99999


Q ss_pred             HHHHhCCCCcEEEEEccHHHHHH
Q 027179          198 NLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       198 N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      |++.|++++ ++++++|+++.+.
T Consensus        74 n~~~n~~~~-v~~~~~d~~~~~~   95 (170)
T PF05175_consen   74 NAERNGLEN-VEVVQSDLFEALP   95 (170)
T ss_dssp             HHHHTTCTT-EEEEESSTTTTCC
T ss_pred             HHHhcCccc-ccccccccccccc
Confidence            999999986 9999999887554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.41  E-value=1.5e-12  Score=118.21  Aligned_cols=70  Identities=26%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHHhh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~~~  224 (227)
                      .++++||||||+||+||+.|+..||.+|++||+|..|+ +++++|++.||++ ++++++++|++++++++.+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~  192 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK  192 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHhc
Confidence            46789999999999999999999999999999999999 9999999999986 6899999999999987643

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=9.6e-13  Score=120.08  Aligned_cols=70  Identities=26%  Similarity=0.321  Sum_probs=62.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      |.+++|||.+..+++=+.+         .++++|||+|||||.++|++++.|+++|+++|+||.|+ +.+++|+++|++.
T Consensus       142 GTG~HpTT~lcL~~Le~~~---------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~  211 (300)
T COG2264         142 GTGTHPTTSLCLEALEKLL---------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVE  211 (300)
T ss_pred             CCCCChhHHHHHHHHHHhh---------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCc
Confidence            5789999998776653322         46889999999999999999999999999999999999 9999999999997

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.34  E-value=3.2e-12  Score=111.97  Aligned_cols=110  Identities=22%  Similarity=0.184  Sum_probs=89.2

Q ss_pred             cccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc
Q 027179          100 QEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR  176 (227)
Q Consensus       100 ~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~  176 (227)
                      ..+|....+++++.|.  |+++.|.+.++. .+||.++.+.+.++..+..       .++.+|||+|||+|.+++.++..
T Consensus        57 ~~~~~~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-------~~~~~vLDiG~GsG~~~~~la~~  129 (275)
T PRK09328         57 VARRAAGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLL-------KEPLRVLDLGTGSGAIALALAKE  129 (275)
T ss_pred             HHHHHcCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccc-------cCCCEEEEEcCcHHHHHHHHHHH
Confidence            4455556788988885  889999887664 7999999999888755432       35678999999999999999875


Q ss_pred             C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          177 G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       177 G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      . ..+|+++|+++.++ +.+++|++ ++..++++++++|+++.
T Consensus       130 ~~~~~v~~iDis~~~l-~~a~~n~~-~~~~~~i~~~~~d~~~~  170 (275)
T PRK09328        130 RPDAEVTAVDISPEAL-AVARRNAK-HGLGARVEFLQGDWFEP  170 (275)
T ss_pred             CCCCEEEEEECCHHHH-HHHHHHHH-hCCCCcEEEEEccccCc
Confidence            3 46899999999999 99999998 44445799999998654

>PLN02672 methionine S-methyltransferase

Probab=99.33  E-value=5e-12  Score=131.20  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=81.2

Q ss_pred             ccCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHH
Q 027179          115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS  192 (227)
Q Consensus       115 ~~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~  192 (227)
                      .|+|++|.+.++. +|||.|+.+.+. ++.....     ..++.+|||+|||||.+++.++... ..+|++||+|+.|+ 
T Consensus        83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~-----~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al-  155 (1082)
T PLN02672         83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDS-----IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV-  155 (1082)
T ss_pred             EecCCceeeCCCcccCchhHHHHHHH-HHhcccc-----cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence            4899999997775 899999999887 4432110     1245689999999999999988753 46899999999999 


Q ss_pred             HHHHHHHHHhCCC---------------CcEEEEEccHHHHHH
Q 027179          193 NVLIPNLEWTGFL---------------DVSSIHTVRVETFLE  220 (227)
Q Consensus       193 ~~ar~N~~~ngl~---------------~~v~~i~gDa~~~L~  220 (227)
                      +++++|++.|+++               ++++++++|+++.+.
T Consensus       156 ~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        156 KVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             HHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            9999999998643               479999999998774

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.30  E-value=2.4e-11  Score=114.54  Aligned_cols=68  Identities=22%  Similarity=0.282  Sum_probs=62.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~  222 (227)
                      .++++|||||||||.++++++..|+.+|++||+|+.++ +++++|++.|+++ ++++++++|+++++.++
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~  287 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTY  287 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHH
Confidence            35789999999999999998888888999999999999 9999999999996 47999999999998765

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.30  E-value=2.7e-11  Score=112.81  Aligned_cols=99  Identities=11%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             cCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 027179          116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL  195 (227)
Q Consensus       116 ~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a  195 (227)
                      +.|.++.+.++.+. .+...+.+.+++++....+   ...+.+|||||||+|.+++++++++ .+|++||+|+.|+ +.+
T Consensus       198 ~~g~~~~~~~~~F~-Q~n~~~~~~l~~~~~~~l~---~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av-~~a  271 (374)
T TIGR02085       198 FNDVPLVIRPQSFF-QTNPKVAAQLYATARQWVR---EIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAI-ACA  271 (374)
T ss_pred             ECCEEEEECCCccc-cCCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHH-HHH
Confidence            34667777776553 4445577777776543210   1346799999999999999999876 5899999999999 999


Q ss_pred             HHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          196 IPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       196 r~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ++|++.++++ +++++++|+.+++..
T Consensus       272 ~~N~~~~~~~-~~~~~~~d~~~~~~~  296 (374)
T TIGR02085       272 QQSAQMLGLD-NLSFAALDSAKFATA  296 (374)
T ss_pred             HHHHHHcCCC-cEEEEECCHHHHHHh
Confidence            9999999985 799999999988753

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.29  E-value=3.4e-11  Score=111.87  Aligned_cols=96  Identities=19%  Similarity=0.164  Sum_probs=73.5

Q ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179          119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN  198 (227)
Q Consensus       119 r~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N  198 (227)
                      ..+.++++.+..+.++ +.+.+++++.....    ..+.+|||||||+|.|++.++ +++.+|++||+++.|+ +.+++|
T Consensus       175 ~~~~~~~~sF~Q~N~~-~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl~la-~~~~~v~~vE~~~~ai-~~a~~N  247 (362)
T PRK05031        175 FIYRQVENSFTQPNAA-VNEKMLEWALDATK----GSKGDLLELYCGNGNFTLALA-RNFRRVLATEISKPSV-AAAQYN  247 (362)
T ss_pred             EEEEeCCCCeeccCHH-HHHHHHHHHHHHhh----cCCCeEEEEeccccHHHHHHH-hhCCEEEEEECCHHHH-HHHHHH
Confidence            4566666666655554 44566666544311    123579999999999999655 4567999999999999 999999


Q ss_pred             HHHhCCCCcEEEEEccHHHHHHHH
Q 027179          199 LEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       199 ~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.|+++ +++++++|+.++++.+
T Consensus       248 ~~~~~~~-~v~~~~~d~~~~l~~~  270 (362)
T PRK05031        248 IAANGID-NVQIIRMSAEEFTQAM  270 (362)
T ss_pred             HHHhCCC-cEEEEECCHHHHHHHH
Confidence            9999996 6999999999998764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.29  E-value=2.2e-11  Score=103.25  Aligned_cols=83  Identities=27%  Similarity=0.234  Sum_probs=69.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      +|.+.++...+..+..       .++.+|||+|||||.++++++.. + ..+|++||+++.++ +.+++|++.+++.+++
T Consensus        23 ~t~~~~r~~~l~~l~~-------~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v   94 (198)
T PRK00377         23 MTKEEIRALALSKLRL-------RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNI   94 (198)
T ss_pred             CCHHHHHHHHHHHcCC-------CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCe
Confidence            5667777666665543       46789999999999999998764 3 46899999999999 9999999999976789


Q ss_pred             EEEEccHHHHHHH
Q 027179          209 SIHTVRVETFLER  221 (227)
Q Consensus       209 ~~i~gDa~~~L~~  221 (227)
                      +++++|+.+.+..
T Consensus        95 ~~~~~d~~~~l~~  107 (198)
T PRK00377         95 VLIKGEAPEILFT  107 (198)
T ss_pred             EEEEechhhhHhh
Confidence            9999999887654

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.28  E-value=1.3e-11  Score=110.09  Aligned_cols=96  Identities=20%  Similarity=0.238  Sum_probs=77.8

Q ss_pred             CeeecC-CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 027179          118 RKKLLS-PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVL  195 (227)
Q Consensus       118 Gr~L~v-~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~a  195 (227)
                      ++.+.+ .+...+|+.+|.+.-+.|  ...       ....+|||||||+|.+++.++++ ...++++||+++++. +.|
T Consensus        15 ~~~~~I~q~~~~~~~~~DaiLL~~~--~~~-------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A   84 (248)
T COG4123          15 FKQFFIIQDRCGFRYGTDAILLAAF--APV-------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMA   84 (248)
T ss_pred             ccceEEEeCCCccccccHHHHHHhh--ccc-------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHH
Confidence            344433 344589999997664433  322       23679999999999999999987 547899999999999 999


Q ss_pred             HHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179          196 IPNLEWTGFLDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       196 r~N~~~ngl~~~v~~i~gDa~~~L~~~~  223 (227)
                      ++|++.|+++++++++++|+.++.+...
T Consensus        85 ~~nv~ln~l~~ri~v~~~Di~~~~~~~~  112 (248)
T COG4123          85 QRNVALNPLEERIQVIEADIKEFLKALV  112 (248)
T ss_pred             HHHHHhCcchhceeEehhhHHHhhhccc
Confidence            9999999999999999999998876543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.27  E-value=2.6e-11  Score=114.98  Aligned_cols=95  Identities=18%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             cCCeeecCCCCCCC---CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Q 027179          116 ARRKKLLSPKGMDV---RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS  192 (227)
Q Consensus       116 ~~Gr~L~v~~g~~~---RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~  192 (227)
                      |.|..|.+.++.+.   +..++.+.+.+++++..       .++.+|||+|||+|.+++.++..+ .+|++||+|+.++ 
T Consensus       262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~-------~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al-  332 (443)
T PRK13168        262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP-------QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMV-  332 (443)
T ss_pred             cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC-------CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHH-
Confidence            56788888777653   34456677777777653       356799999999999999988776 5899999999999 


Q ss_pred             HHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          193 NVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       193 ~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      +.+++|++.+++. +++++++|+.+.+.
T Consensus       333 ~~A~~n~~~~~~~-~v~~~~~d~~~~l~  359 (443)
T PRK13168        333 ERARENARRNGLD-NVTFYHANLEEDFT  359 (443)
T ss_pred             HHHHHHHHHcCCC-ceEEEEeChHHhhh
Confidence            9999999999986 59999999988764

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.26  E-value=7.5e-11  Score=107.19  Aligned_cols=94  Identities=15%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             CCeeecCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Q 027179          117 RRKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN  193 (227)
Q Consensus       117 ~Gr~L~v~~g~~~RPtt---e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~  193 (227)
                      .|..+.+.++.+.....   +.+.+.+.+++..       .++.+|||+|||+|.+++.++..+ .+|++||+++.++ +
T Consensus       139 ~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~-------~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av-~  209 (315)
T PRK03522        139 NGVPLFIRPQSFFQTNPAVAAQLYATARDWVRE-------LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAI-A  209 (315)
T ss_pred             CCEEEEECCCeeeecCHHHHHHHHHHHHHHHHh-------cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHH-H
Confidence            45566666654433333   2333334444432       356799999999999999999877 5899999999999 9


Q ss_pred             HHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          194 VLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       194 ~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .+++|++.+++ ++++++++|+.+++.
T Consensus       210 ~A~~n~~~~~l-~~v~~~~~D~~~~~~  235 (315)
T PRK03522        210 CAKQSAAELGL-TNVQFQALDSTQFAT  235 (315)
T ss_pred             HHHHHHHHcCC-CceEEEEcCHHHHHH
Confidence            99999999999 479999999998764

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=3.9e-11  Score=114.33  Aligned_cols=95  Identities=23%  Similarity=0.225  Sum_probs=77.1

Q ss_pred             CeeecCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 027179          118 RKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV  194 (227)
Q Consensus       118 Gr~L~v~~g~~~RPtt---e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~  194 (227)
                      +..+.+++..+.-+..   +.+.+.+.+|+..       ..++++||||||.|.||+.+|.+ ..+|++||++++|+ +.
T Consensus       260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~-------~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV-~~  330 (432)
T COG2265         260 GVSFQISPRSFFQVNPAVAEKLYETALEWLEL-------AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAV-EA  330 (432)
T ss_pred             ceEEEeCCCCceecCHHHHHHHHHHHHHHHhh-------cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHH-HH
Confidence            5667776665555554   3455556666664       35689999999999999998855 56899999999999 99


Q ss_pred             HHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          195 LIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       195 ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      |++|++.|+++| ++++.+|+++++...
T Consensus       331 A~~NA~~n~i~N-~~f~~~~ae~~~~~~  357 (432)
T COG2265         331 AQENAAANGIDN-VEFIAGDAEEFTPAW  357 (432)
T ss_pred             HHHHHHHcCCCc-EEEEeCCHHHHhhhc
Confidence            999999999986 999999999998765

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.25  E-value=3.8e-11  Score=101.53  Aligned_cols=86  Identities=21%  Similarity=0.122  Sum_probs=71.1

Q ss_pred             CCCCCCH--HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          127 MDVRPMM--EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       127 ~~~RPtt--e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      ...||++  +.+.+.+++.+....    ...+.+|||+|||+|.+++.++..+ ..+|++||.|+.++ +.+++|++.++
T Consensus        16 ~l~~~~~~~~~~~~~~~d~i~~~~----~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~~~   90 (181)
T TIGR00138        16 NLTSLKTPEEIWERHILDSLKLLE----YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAELG   90 (181)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHH----hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHhC
Confidence            3588888  778888888764321    1467899999999999999987643 46899999999999 99999999999


Q ss_pred             CCCcEEEEEccHHHH
Q 027179          204 FLDVSSIHTVRVETF  218 (227)
Q Consensus       204 l~~~v~~i~gDa~~~  218 (227)
                      +. +++++++|+.++
T Consensus        91 ~~-~i~~i~~d~~~~  104 (181)
T TIGR00138        91 LN-NVEIVNGRAEDF  104 (181)
T ss_pred             CC-CeEEEecchhhc
Confidence            86 599999999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.24  E-value=8.3e-11  Score=99.27  Aligned_cols=85  Identities=20%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      ..+++...+...+++++..       .++.+|||+|||+|.++++++.. ...+|++||+|+.++ +.+++|++.+++. 
T Consensus        20 ~~p~t~~~v~~~l~~~l~~-------~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~~-   90 (196)
T PRK07402         20 GIPLTKREVRLLLISQLRL-------EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGVK-   90 (196)
T ss_pred             CCCCCHHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-
Confidence            4568888888888887753       36689999999999999998754 346899999999999 9999999999985 


Q ss_pred             cEEEEEccHHHHHHH
Q 027179          207 VSSIHTVRVETFLER  221 (227)
Q Consensus       207 ~v~~i~gDa~~~L~~  221 (227)
                      +++++++|+.+.+..
T Consensus        91 ~v~~~~~d~~~~~~~  105 (196)
T PRK07402         91 NVEVIEGSAPECLAQ  105 (196)
T ss_pred             CeEEEECchHHHHhh
Confidence            699999999876543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.24  E-value=3.8e-11  Score=91.04  Aligned_cols=60  Identities=23%  Similarity=0.225  Sum_probs=54.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      ++.+|||||||+|.+++++++ ....+|++||+|++++ +.+++|+...+..++++++++|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc
Confidence            367999999999999999998 2445899999999999 99999998888888999999998

...

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.24  E-value=3.2e-11  Score=92.29  Aligned_cols=63  Identities=27%  Similarity=0.332  Sum_probs=58.7

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      |.+|||+|||+|.+.+.++..+..+++++|+|+.++ +++++|+..+++.++++++++|+.+..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~   63 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLP   63 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhch
Confidence            358999999999999999988867999999999999 999999999999888999999998876

...

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.23  E-value=6.4e-11  Score=109.74  Aligned_cols=92  Identities=18%  Similarity=0.157  Sum_probs=71.4

Q ss_pred             eeecCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 027179          119 KKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL  195 (227)
Q Consensus       119 r~L~v~~g~~~RPtt---e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a  195 (227)
                      .++..+++.+..+.+   +.+.+.+.+++..        .+.+|||||||+|.|++.++. ++.+|++||+++.|+ +.+
T Consensus       166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~--------~~~~vlDl~~G~G~~sl~la~-~~~~v~~vE~~~~av-~~a  235 (353)
T TIGR02143       166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQG--------SKGDLLELYCGNGNFSLALAQ-NFRRVLATEIAKPSV-NAA  235 (353)
T ss_pred             EEEEECCCCcccCCHHHHHHHHHHHHHHhhc--------CCCcEEEEeccccHHHHHHHH-hCCEEEEEECCHHHH-HHH
Confidence            566666665554443   4555555565532        234699999999999996654 457999999999999 999


Q ss_pred             HHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          196 IPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       196 r~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ++|++.|+++ +++++++|+.+++..
T Consensus       236 ~~n~~~~~~~-~v~~~~~d~~~~~~~  260 (353)
T TIGR02143       236 QYNIAANNID-NVQIIRMSAEEFTQA  260 (353)
T ss_pred             HHHHHHcCCC-cEEEEEcCHHHHHHH
Confidence            9999999996 599999999998864

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.20  E-value=5.9e-11  Score=118.75  Aligned_cols=67  Identities=18%  Similarity=0.271  Sum_probs=62.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~  222 (227)
                      .+++|||||||||.+++.++..|+.+|++||+|+.|+ +++++|++.|++. ++++++++|++++++..
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~  605 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEA  605 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHc
Confidence            5789999999999999999998988999999999999 9999999999996 68999999999998653

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.19  E-value=7.3e-11  Score=101.54  Aligned_cols=109  Identities=21%  Similarity=0.204  Sum_probs=87.3

Q ss_pred             ccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-
Q 027179          101 EERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-  176 (227)
Q Consensus       101 ~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-  176 (227)
                      ..+..+.+++++.|.  |.+..+.+..+. .+||.++.+.+.+++.+..        .+.+|||+|||+|.+++.++.. 
T Consensus        38 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~--------~~~~ilDig~G~G~~~~~l~~~~  109 (251)
T TIGR03534        38 ARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLKK--------GPLRVLDLGTGSGAIALALAKER  109 (251)
T ss_pred             HHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhccc--------CCCeEEEEeCcHhHHHHHHHHHC
Confidence            334445677777774  678888876554 6999999888887766542        3468999999999999999875 


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       177 Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ...+|+++|+++.++ +.+++|++.+++. +++++++|+.+.+
T Consensus       110 ~~~~v~~iD~~~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~  150 (251)
T TIGR03534       110 PDARVTAVDISPEAL-AVARKNAARLGLD-NVTFLQSDWFEPL  150 (251)
T ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhccC
Confidence            345899999999999 9999999999986 6999999997644

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.18  E-value=4.8e-11  Score=103.26  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|+|+|||.|.|+|.+|+ ..++.|+|+|+||+|+ +.+++|++.|+++++++++++|+.+++.
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~  166 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP  166 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence            4678999999999999999997 3456899999999999 9999999999999999999999999886

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.17  E-value=5.2e-11  Score=110.48  Aligned_cols=67  Identities=16%  Similarity=0.210  Sum_probs=63.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .+|.+|+|+|||.|.|+|.+|+.|+..|+|+|+||+|+ +.+++|+++|++.++++.++||+.++...
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~~  253 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAPE  253 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence            46899999999999999999999887799999999999 99999999999998899999999998876

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=5e-11  Score=114.94  Aligned_cols=107  Identities=21%  Similarity=0.233  Sum_probs=82.7

Q ss_pred             cceEEEEecc------cCCeeecCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc
Q 027179          106 HRLLQVLGGK------ARRKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR  176 (227)
Q Consensus       106 ~~~L~ii~G~------~~Gr~L~v~~g~~~RPtt---e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~  176 (227)
                      .+.++++.|.      +.|.+|.++++.+..--+   |++...+=+|+..       ..++.++|+|||||.||++++ +
T Consensus       332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l-------~~~k~llDv~CGTG~iglala-~  403 (534)
T KOG2187|consen  332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGL-------PADKTLLDVCCGTGTIGLALA-R  403 (534)
T ss_pred             CCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCC-------CCCcEEEEEeecCCceehhhh-c
Confidence            3467777764      789999999887544333   3333333344432       356899999999999999765 5


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       177 Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++++|++||+++.|+ +.|++|++.||++ |.+|++|.+++.+..+
T Consensus       404 ~~~~ViGvEi~~~aV-~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl  447 (534)
T KOG2187|consen  404 GVKRVIGVEISPDAV-EDAEKNAQINGIS-NATFIVGQAEDLFPSL  447 (534)
T ss_pred             cccceeeeecChhhc-chhhhcchhcCcc-ceeeeecchhhccchh
Confidence            688999999999999 9999999999997 5999999888776554

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.14  E-value=2.8e-10  Score=102.34  Aligned_cols=80  Identities=23%  Similarity=0.324  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      |.+.+|||.+..+.+-. +.        .++.+|||+|||||.+++.+++.|+.+|++||+|+.++ +.+++|++.|++.
T Consensus       139 gtG~h~tt~l~l~~l~~-~~--------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~~~  208 (288)
T TIGR00406       139 GTGTHPTTSLCLEWLED-LD--------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQVS  208 (288)
T ss_pred             cCCCCHHHHHHHHHHHh-hc--------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCC
Confidence            35688999876655422 21        35689999999999999999888888999999999999 9999999999988


Q ss_pred             CcEEEEEccH
Q 027179          206 DVSSIHTVRV  215 (227)
Q Consensus       206 ~~v~~i~gDa  215 (227)
                      +++.++.+|.
T Consensus       209 ~~~~~~~~~~  218 (288)
T TIGR00406       209 DRLQVKLIYL  218 (288)
T ss_pred             cceEEEeccc
Confidence            7777777653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.14  E-value=3.8e-10  Score=106.28  Aligned_cols=96  Identities=18%  Similarity=0.138  Sum_probs=74.0

Q ss_pred             cCCeeecCCCCCCCCC---CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Q 027179          116 ARRKKLLSPKGMDVRP---MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS  192 (227)
Q Consensus       116 ~~Gr~L~v~~g~~~RP---tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~  192 (227)
                      +.|.++.+.++.+...   ..+.+.+.+..++..       ..+.+|||+|||+|.+++.++..+ .+|++||+++.++ 
T Consensus       257 ~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~-------~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av-  327 (431)
T TIGR00479       257 SGDLSFSLSARDFFQVNSGQNEKLVDRALEALEL-------QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESV-  327 (431)
T ss_pred             ECCEEEEECCCceeecCHHHHHHHHHHHHHHhcc-------CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHH-
Confidence            3477788876654332   233444555555432       345799999999999999988764 5899999999999 


Q ss_pred             HHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          193 NVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       193 ~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      +.+++|++.|++. +++++++|+.+++..
T Consensus       328 ~~a~~n~~~~~~~-nv~~~~~d~~~~l~~  355 (431)
T TIGR00479       328 EKAQQNAELNGIA-NVEFLAGTLETVLPK  355 (431)
T ss_pred             HHHHHHHHHhCCC-ceEEEeCCHHHHHHH
Confidence            9999999999985 699999999987754

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.14  E-value=1.6e-10  Score=107.03  Aligned_cols=92  Identities=21%  Similarity=0.176  Sum_probs=62.9

Q ss_pred             CeeecCCCCCCCCCCHH---HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 027179          118 RKKLLSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV  194 (227)
Q Consensus       118 Gr~L~v~~g~~~RPtte---~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~  194 (227)
                      +..|.++++.+..+.++   .+.+.+.+|+..        .+..+||||||+|.||+.+|.. +.+|+|||+++.|+ +.
T Consensus       164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~--------~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av-~~  233 (352)
T PF05958_consen  164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDL--------SKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAV-ED  233 (352)
T ss_dssp             TEEEEEETTS---SBHHHHHHHHHHHHHHCTT---------TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHH-HH
T ss_pred             ceEEEECCCcCccCcHHHHHHHHHHHHHHhhc--------CCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHH-HH
Confidence            55667766666555554   333444444442        2337999999999999998765 46899999999999 99


Q ss_pred             HHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          195 LIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       195 ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      |++|++.|+++ +++++++++.++..
T Consensus       234 A~~Na~~N~i~-n~~f~~~~~~~~~~  258 (352)
T PF05958_consen  234 ARENAKLNGID-NVEFIRGDAEDFAK  258 (352)
T ss_dssp             HHHHHHHTT---SEEEEE--SHHCCC
T ss_pred             HHHHHHHcCCC-cceEEEeeccchhH
Confidence            99999999996 59999999877543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.13  E-value=2.5e-10  Score=100.40  Aligned_cols=79  Identities=24%  Similarity=0.267  Sum_probs=63.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      |.+++++|..+.+.+...+         .++.+|||+|||+|.+++.+++.|+.+|+++|+|+.++ +.+++|++.|++.
T Consensus        99 gtg~h~tt~~~l~~l~~~~---------~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~~  168 (250)
T PRK00517         99 GTGTHPTTRLCLEALEKLV---------LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGVE  168 (250)
T ss_pred             CCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCC
Confidence            3567888887665553321         36789999999999999998888887899999999999 9999999999986


Q ss_pred             CcEEEEEcc
Q 027179          206 DVSSIHTVR  214 (227)
Q Consensus       206 ~~v~~i~gD  214 (227)
                      +++.+..+|
T Consensus       169 ~~~~~~~~~  177 (250)
T PRK00517        169 LNVYLPQGD  177 (250)
T ss_pred             ceEEEccCC
Confidence            556555543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.12  E-value=5.2e-10  Score=93.61  Aligned_cols=81  Identities=26%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      .-++.+.+++.+++++..       .++.+|||+|||+|.+++.+++.+ ..+|+++|+++.++ +.+++|++.+++. +
T Consensus        12 ~~~~~~~~r~~~~~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~-~   82 (187)
T PRK08287         12 VPMTKEEVRALALSKLEL-------HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCG-N   82 (187)
T ss_pred             CCCchHHHHHHHHHhcCC-------CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-C
Confidence            337778888888887754       356799999999999999998764 46899999999999 9999999999885 6


Q ss_pred             EEEEEccHHHH
Q 027179          208 SSIHTVRVETF  218 (227)
Q Consensus       208 v~~i~gDa~~~  218 (227)
                      ++++++|+...
T Consensus        83 i~~~~~d~~~~   93 (187)
T PRK08287         83 IDIIPGEAPIE   93 (187)
T ss_pred             eEEEecCchhh
Confidence            99999997543

>PRK14967 putative methyltransferase; Provisional

Probab=99.12  E-value=5.3e-10  Score=96.45  Aligned_cols=93  Identities=20%  Similarity=0.256  Sum_probs=70.4

Q ss_pred             cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 027179          116 ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV  194 (227)
Q Consensus       116 ~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~  194 (227)
                      +.|..|.+++|. .++..++.+.    +++....    ..++.+|||+|||+|.+++.++..++.+|+++|+|+.++ +.
T Consensus         4 ~~~~~~~~~~g~~~p~~ds~~l~----~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~   74 (223)
T PRK14967          4 TPPDALLRAPGVYRPQEDTQLLA----DALAAEG----LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RS   74 (223)
T ss_pred             CCCceeecCCCCcCCCCcHHHHH----HHHHhcc----cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HH
Confidence            456777787763 3444444333    3333211    135679999999999999998887777999999999999 99


Q ss_pred             HHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          195 LIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       195 ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      +++|++.+++  +++++++|+.+.+
T Consensus        75 a~~n~~~~~~--~~~~~~~d~~~~~   97 (223)
T PRK14967         75 ARLNALLAGV--DVDVRRGDWARAV   97 (223)
T ss_pred             HHHHHHHhCC--eeEEEECchhhhc
Confidence            9999999987  4889999988754

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=6.1e-11  Score=99.11  Aligned_cols=87  Identities=14%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      ....||.+.++..++..+.+..+   +.+++.++|||||+|.+++.++..++..|+++|++|+|+ +.+.+|++.+.++ 
T Consensus        23 LEQY~T~p~iAasM~~~Ih~Tyg---diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvq-   97 (185)
T KOG3420|consen   23 LEQYPTRPHIAASMLYTIHNTYG---DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQ-   97 (185)
T ss_pred             hhhCCCcHHHHHHHHHHHHhhhc---cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhh-
Confidence            35778888888888888766543   589999999999999999988888889999999999999 9999999999984 


Q ss_pred             cEEEEEccHHHHH
Q 027179          207 VSSIHTVRVETFL  219 (227)
Q Consensus       207 ~v~~i~gDa~~~L  219 (227)
                       +.++|+|..+..
T Consensus        98 -idlLqcdildle  109 (185)
T KOG3420|consen   98 -IDLLQCDILDLE  109 (185)
T ss_pred             -hheeeeeccchh
Confidence             689999987643

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.07  E-value=6.2e-10  Score=104.38  Aligned_cols=92  Identities=16%  Similarity=0.163  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHHHHH---HhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHH
Q 027179          126 GMDVRPMMEVVKGAAFDIL---QSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       126 g~~~RPtte~v~ealf~~L---~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~  200 (227)
                      ..+++|.++.-+...+..+   ....+   ...+-+|||+|||||.+||+++++  |+.+|+++|+|+.|+ +.+++|++
T Consensus        15 ~vFYNP~~~~nRDlsv~~~~~~~~~~~---~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~   90 (374)
T TIGR00308        15 TVFYNPRMQFNRDLSVTCIQAFDNLYG---KECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVE   90 (374)
T ss_pred             CcccCchhhccccHHHHHHHHHHHhhC---CcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHH
Confidence            3588888865443322211   11100   011348999999999999999987  788999999999999 99999999


Q ss_pred             HhCCCCcEEEEEccHHHHHHHH
Q 027179          201 WTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       201 ~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      .|++. +++++++|+.+++...
T Consensus        91 ~N~~~-~~~v~~~Da~~~l~~~  111 (374)
T TIGR00308        91 YNSVE-NIEVPNEDAANVLRYR  111 (374)
T ss_pred             HhCCC-cEEEEchhHHHHHHHh
Confidence            99986 5899999999998764

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.99  E-value=3.3e-09  Score=99.67  Aligned_cols=64  Identities=23%  Similarity=0.357  Sum_probs=57.1

Q ss_pred             CCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      +.+|||+|||||.+|+.++.. ++.+|+++|+|+.|+ +.+++|++.|++. +++++++|+.+++..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~-~~~v~~~Da~~~l~~  122 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLE-NEKVFNKDANALLHE  122 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-ceEEEhhhHHHHHhh
Confidence            468999999999999998764 667899999999999 9999999999996 478999999888753

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.99  E-value=3.3e-09  Score=81.04  Aligned_cols=62  Identities=21%  Similarity=0.157  Sum_probs=54.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.+++.++++ +..+|+++|.++.++ +.+++|++.+++. +++++.+|+.+.
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~~~~~~   81 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVS-NIVIVEGDAPEA   81 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCC-ceEEEecccccc
Confidence            4679999999999999999876 346899999999999 9999999999876 589999987653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.98  E-value=2.2e-09  Score=92.11  Aligned_cols=80  Identities=13%  Similarity=-0.052  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~  209 (227)
                      ..+.+...+.+.+..       .++.+|||+|||+|.+++.++...  ..+|++||++++++ +.+++|++.+++. +++
T Consensus        61 ~~p~~~~~~~~~l~~-------~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~~-~v~  131 (215)
T TIGR00080        61 SAPHMVAMMTELLEL-------KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGLD-NVI  131 (215)
T ss_pred             chHHHHHHHHHHhCC-------CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCCC-CeE
Confidence            344455555565543       467899999999999999888753  24799999999999 9999999999984 699


Q ss_pred             EEEccHHHHHH
Q 027179          210 IHTVRVETFLE  220 (227)
Q Consensus       210 ~i~gDa~~~L~  220 (227)
                      ++++|+.+.+.
T Consensus       132 ~~~~d~~~~~~  142 (215)
T TIGR00080       132 VIVGDGTQGWE  142 (215)
T ss_pred             EEECCcccCCc
Confidence            99999876543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.97  E-value=2.4e-09  Score=86.50  Aligned_cols=63  Identities=17%  Similarity=0.120  Sum_probs=55.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHH-c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS-R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas-~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ++.+|||+|||+|.+++.++. . ...++++||+|++++ +.++++++.+++. +++++++|+.+ +.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~   67 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LP   67 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GC
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cc
Confidence            567999999999999999983 3 346899999999999 9999999999997 79999999988 54

...

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.97  E-value=2.5e-09  Score=91.45  Aligned_cols=80  Identities=15%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      ++.+...+++.+..       .++.+|||+|||||.++..++.. + ..+|+++|++++++ +.+++|++.+++.+++++
T Consensus        57 ~p~~~~~~~~~l~~-------~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~  128 (205)
T PRK13944         57 APHMVAMMCELIEP-------RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEV  128 (205)
T ss_pred             hHHHHHHHHHhcCC-------CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEE
Confidence            34444555555543       35689999999999999887763 2 35899999999999 999999999998778999


Q ss_pred             EEccHHHHHH
Q 027179          211 HTVRVETFLE  220 (227)
Q Consensus       211 i~gDa~~~L~  220 (227)
                      +++|+.+.+.
T Consensus       129 ~~~d~~~~~~  138 (205)
T PRK13944        129 YHGDGKRGLE  138 (205)
T ss_pred             EECCcccCCc
Confidence            9999876543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.95  E-value=3.8e-09  Score=99.30  Aligned_cols=94  Identities=17%  Similarity=0.147  Sum_probs=72.8

Q ss_pred             CeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 027179          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       118 Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar  196 (227)
                      +..+...+|.+-+-.-|.=...+++.+..       ..+.+|||||||+|.+++.+++++ ..+|++||+|+.|+ +.++
T Consensus       198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~  269 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSR  269 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHH
Confidence            45555567777777666555556666543       234689999999999999998864 46899999999999 9999


Q ss_pred             HHHHHhCCC--CcEEEEEccHHHHH
Q 027179          197 PNLEWTGFL--DVSSIHTVRVETFL  219 (227)
Q Consensus       197 ~N~~~ngl~--~~v~~i~gDa~~~L  219 (227)
                      +|++.|+..  ++++++.+|+++.+
T Consensus       270 ~N~~~n~~~~~~~v~~~~~D~l~~~  294 (378)
T PRK15001        270 LNVETNMPEALDRCEFMINNALSGV  294 (378)
T ss_pred             HHHHHcCcccCceEEEEEccccccC
Confidence            999999854  36899999986543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.94  E-value=8e-09  Score=90.64  Aligned_cols=68  Identities=10%  Similarity=0.031  Sum_probs=60.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ...++|||+|||+|.-++.++.  .+.++|+++|++++++ +.+++|++.+|+.++++++++|+.+.|..+
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQL  136 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence            3577999999999997777664  3457999999999999 999999999999989999999999998775

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=3e-09  Score=97.20  Aligned_cols=169  Identities=14%  Similarity=0.158  Sum_probs=110.6

Q ss_pred             ccceeeeeccCCCCCChHHHHHHHHHcCCCCccc-cCCCCCcccccccCCCCccccccccccccccccceEEE-------
Q 027179           40 RYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEF-LSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV-------  111 (227)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~l~~~er~~~~~~~~~~~~~~~~~~~~~~~~~L~i-------  111 (227)
                      ..-++.-+.+...+..+..-++++....-+-.++ +|++-.+-++...  +-.+.....+..+.+  |.++-+       
T Consensus        37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k--~l~~~~~~~~~~~a~--~~~~~~~~~~~~~  112 (300)
T COG2813          37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEK--MLEKYGGPTKTDSAR--HCMRLHYYSENPP  112 (300)
T ss_pred             CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHH--HHHHhcCccccchHh--hcceeEeecCCCC
Confidence            5677778888888878777778888887777666 4444443321100  000000000000000  000000       


Q ss_pred             -------Eecc--cCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEE
Q 027179          112 -------LGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEV  181 (227)
Q Consensus       112 -------i~G~--~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V  181 (227)
                             ....  -...+|...+|.+-+-..|.=.+.+++.+...       .+.+|||+|||-|.+|+.+++.. ..++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~~~vlDlGCG~Gvlg~~la~~~p~~~v  185 (300)
T COG2813         113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------LGGKVLDLGCGYGVLGLVLAKKSPQAKL  185 (300)
T ss_pred             cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------CCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence                   0011  13456667888887777776666777776642       34499999999999999999864 5799


Q ss_pred             EEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       182 ~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      +.||+|..|+ +.+++|++.|++++. +++.+|+++..+.
T Consensus       186 tmvDvn~~Av-~~ar~Nl~~N~~~~~-~v~~s~~~~~v~~  223 (300)
T COG2813         186 TLVDVNARAV-ESARKNLAANGVENT-EVWASNLYEPVEG  223 (300)
T ss_pred             EEEecCHHHH-HHHHHhHHHcCCCcc-EEEEecccccccc
Confidence            9999999999 999999999999753 8888898876654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.93  E-value=2.3e-09  Score=90.31  Aligned_cols=63  Identities=22%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      .|+|+|||.|.-+|.+|+.. .+|++||+|+.-+ +.++.|++..|+.++++++++|+++.+.+.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~   64 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRL   64 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB
T ss_pred             EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhc
Confidence            69999999999999999875 5899999999999 999999999999999999999999977654

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.93  E-value=7.6e-09  Score=88.48  Aligned_cols=80  Identities=20%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      +..+.+++.+++++...     ...+.+|||+|||+|.++..++..+. +|++||+++.++ +.+++++..++..+++++
T Consensus        36 ~~~~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i-~~a~~~~~~~~~~~~i~~  108 (219)
T TIGR02021        36 EGRAAMRRKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMV-QMARNRAQGRDVAGNVEF  108 (219)
T ss_pred             HHHHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEE
Confidence            34555666677777631     13578999999999999999988765 899999999999 999999988887667999


Q ss_pred             EEccHHH
Q 027179          211 HTVRVET  217 (227)
Q Consensus       211 i~gDa~~  217 (227)
                      +++|+.+
T Consensus       109 ~~~d~~~  115 (219)
T TIGR02021       109 EVNDLLS  115 (219)
T ss_pred             EECChhh
Confidence            9998765

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.92  E-value=7.2e-09  Score=86.15  Aligned_cols=61  Identities=20%  Similarity=0.284  Sum_probs=54.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ++.+|||+|||+|.+++.++..+. +|+++|+++.++ +.+++|++.+++  +++++++|+.+.+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~   79 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAV-KELRENAKLNNV--GLDVVMTDLFKGV   79 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccccccc
Confidence            557899999999999999988876 899999999999 999999999987  4889999987643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.92  E-value=4.7e-09  Score=89.60  Aligned_cols=62  Identities=26%  Similarity=0.207  Sum_probs=55.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.+++.++. ....+|++||+++.++ +.+++|++.+++++ ++++++|+.+.
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~~-i~~~~~d~~~~  107 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLKN-VTVVHGRAEEF  107 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCCC-EEEEeccHhhC
Confidence            378999999999999998876 3456899999999999 99999999999865 99999999774

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.88  E-value=5.9e-09  Score=86.18  Aligned_cols=59  Identities=20%  Similarity=0.269  Sum_probs=51.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.++.++++++ .+|++||+|+.++ +.+++|+..   .++++++++|+.++
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~-~~~~~~~~~---~~~v~ii~~D~~~~   71 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLA-PRLREKFAA---ADNLTVIHGDALKF   71 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHH-HHHHHHhcc---CCCEEEEECchhcC
Confidence            56799999999999999999884 6899999999999 999999854   24799999999875

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.87  E-value=1.3e-08  Score=89.43  Aligned_cols=63  Identities=21%  Similarity=0.240  Sum_probs=57.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .+.+|||+|||+|.+++.++..|. +|++||+++.++ +.+++++...++.++++++++|+.+..
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~  106 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIA  106 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHh
Confidence            467999999999999999998874 899999999999 999999999998778999999998753

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.85  E-value=9.4e-09  Score=88.59  Aligned_cols=80  Identities=13%  Similarity=0.011  Sum_probs=64.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      ..+.+.+...+++.+..       .++.+|||+|||||.++..++.. +. .+|++||++++.+ +.+++|++.+++. +
T Consensus        58 ~~~~p~~~~~~~~~l~~-------~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~~-~  128 (212)
T PRK13942         58 TISAIHMVAIMCELLDL-------KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGYD-N  128 (212)
T ss_pred             EeCcHHHHHHHHHHcCC-------CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-C
Confidence            34455566666666653       46789999999999999887764 32 5899999999999 9999999999985 6


Q ss_pred             EEEEEccHHHH
Q 027179          208 SSIHTVRVETF  218 (227)
Q Consensus       208 v~~i~gDa~~~  218 (227)
                      ++++++|+.+.
T Consensus       129 v~~~~gd~~~~  139 (212)
T PRK13942        129 VEVIVGDGTLG  139 (212)
T ss_pred             eEEEECCcccC
Confidence            99999998654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.85  E-value=1.5e-08  Score=92.50  Aligned_cols=75  Identities=25%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      .+.+...+.+++..       .++.+|||+|||||.+.++++..|+ +|+++|+|+.++ +.+++|++.+++.+ +++++
T Consensus       167 ~~~la~~~~~l~~~-------~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~  236 (329)
T TIGR01177       167 DPKLARAMVNLARV-------TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMV-AGARINLEHYGIED-FFVKR  236 (329)
T ss_pred             CHHHHHHHHHHhCC-------CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEe
Confidence            35566666555432       3677999999999999999887765 799999999999 99999999999976 88999


Q ss_pred             ccHHH
Q 027179          213 VRVET  217 (227)
Q Consensus       213 gDa~~  217 (227)
                      +|+.+
T Consensus       237 ~D~~~  241 (329)
T TIGR01177       237 GDATK  241 (329)
T ss_pred             cchhc
Confidence            99875

This family is found exclusively in the Archaea.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.84  E-value=3.5e-08  Score=86.57  Aligned_cols=62  Identities=6%  Similarity=0.035  Sum_probs=54.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++.   ....+|++||.|+.++ +.+++|++.++..++++++++|+.+
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~~~d~~~  120 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRD  120 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEeCChhh
Confidence            567999999999999988775   2335899999999999 9999999998887789999999875

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.84  E-value=6.4e-09  Score=96.51  Aligned_cols=63  Identities=24%  Similarity=0.269  Sum_probs=58.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+++.|||+|||||.+++.+|+.|+.+|++||.+.-|  +.+++.++.|++++.+++++|.+.+.
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDI  121 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEE
Confidence            6789999999999999999999999999999998877  69999999999999999999998764

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.83  E-value=1.6e-08  Score=85.33  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=60.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CC--------EEEEEeCCHHHHHHHHHHH
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CS--------EVHFVEMDPWVVSNVLIPN  198 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~--------~V~aVEis~~Al~~~ar~N  198 (227)
                      +-|..+.++.++++....       .++..|||.|||||+|-||++..+  ..        +++++|+++.++ +.+++|
T Consensus         9 ~a~L~~~lA~~ll~la~~-------~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N   80 (179)
T PF01170_consen    9 PAPLRPTLAAALLNLAGW-------RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGAREN   80 (179)
T ss_dssp             STSS-HHHHHHHHHHTT---------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCC-------CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHH
Confidence            445667777777655443       366799999999999999998643  22        388999999999 999999


Q ss_pred             HHHhCCCCcEEEEEccHHHH
Q 027179          199 LEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       199 ~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++..++.+.+.+.+.|+.+.
T Consensus        81 ~~~ag~~~~i~~~~~D~~~l  100 (179)
T PF01170_consen   81 LKAAGVEDYIDFIQWDAREL  100 (179)
T ss_dssp             HHHTT-CGGEEEEE--GGGG
T ss_pred             HHhcccCCceEEEecchhhc
Confidence            99999988899999998764

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.82  E-value=8.9e-09  Score=91.03  Aligned_cols=87  Identities=15%  Similarity=0.142  Sum_probs=70.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      .--|+|.+++++-......      .....|+|.|||.|.-.|-.+.+|+ .|++||+||.-+ .+|+.|++..|++++|
T Consensus        74 fsvTpe~ia~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikI-a~AkhNaeiYGI~~rI  145 (263)
T KOG2730|consen   74 FSVTPEKIAEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKI-ACARHNAEVYGVPDRI  145 (263)
T ss_pred             EEeccHHHHHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHH-HHHhccceeecCCcee
Confidence            3445566666654444331      2456899999999999999998887 799999999999 9999999999999999


Q ss_pred             EEEEccHHHHHHHHh
Q 027179          209 SIHTVRVETFLERAE  223 (227)
Q Consensus       209 ~~i~gDa~~~L~~~~  223 (227)
                      +|+|||+++....++
T Consensus       146 tFI~GD~ld~~~~lq  160 (263)
T KOG2730|consen  146 TFICGDFLDLASKLK  160 (263)
T ss_pred             EEEechHHHHHHHHh
Confidence            999999998877654

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.81  E-value=2.4e-08  Score=92.54  Aligned_cols=91  Identities=13%  Similarity=0.124  Sum_probs=71.4

Q ss_pred             CeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 027179          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       118 Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar  196 (227)
                      +..+...+|.+-++..+.-.+.+++.+..       ....+|||+|||+|.+++.++.++ ..+|+++|+|+.|+ +.++
T Consensus       166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~  237 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSR  237 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHH
Confidence            56677778887777776655666666643       234589999999999999988764 35899999999999 9999


Q ss_pred             HHHHHhCCCCcEEEEEccHHHH
Q 027179          197 PNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       197 ~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      +|++.|++.  .+++.+|+++.
T Consensus       238 ~nl~~n~l~--~~~~~~D~~~~  257 (342)
T PRK09489        238 ATLAANGLE--GEVFASNVFSD  257 (342)
T ss_pred             HHHHHcCCC--CEEEEcccccc
Confidence            999999985  46777887653

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.81  E-value=2.2e-08  Score=88.95  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=55.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||||-+++.++.. |..+|+++|+|+.++ +.+++-+...+..+ ++++.+|+.+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv~~dAe~  112 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFVVGDAEN  112 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEEEechhh
Confidence            6889999999999999998875 667999999999999 99999999888876 9999999976

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.80  E-value=4.6e-08  Score=89.91  Aligned_cols=85  Identities=19%  Similarity=0.096  Sum_probs=66.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--  204 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl--  204 (227)
                      ..+|+..+.+.+.+++++....    +.++.+|||+|||+|.+++.++..|. +|+++|+|+.++ +.+++|++..+.  
T Consensus       120 l~~~~~~~~~v~~~l~~l~~~~----~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml-~~A~~~~~~~~~~~  193 (315)
T PLN02585        120 LDIRLGHAQTVEKVLLWLAEDG----SLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMV-AEAERRAKEALAAL  193 (315)
T ss_pred             eecccChHHHHHHHHHHHHhcC----CCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhccccc
Confidence            3577888888888888876531    13578999999999999999998875 799999999999 999999876521  


Q ss_pred             --CCcEEEEEccHHH
Q 027179          205 --LDVSSIHTVRVET  217 (227)
Q Consensus       205 --~~~v~~i~gDa~~  217 (227)
                        ..++++.++|+.+
T Consensus       194 ~~~~~~~f~~~Dl~~  208 (315)
T PLN02585        194 PPEVLPKFEANDLES  208 (315)
T ss_pred             ccccceEEEEcchhh
Confidence              1357788888654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.78  E-value=3.1e-08  Score=83.97  Aligned_cols=65  Identities=12%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ...++||+|||+|.+++.++.. ...+|++||+++.++ +.+++|++.+++. +++++++|+.+.+..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~-ni~~i~~d~~~~~~~   81 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLK-NLHVLCGDANELLDK   81 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCC-CEEEEccCHHHHHHh
Confidence            4568999999999999999875 345899999999999 9999999999986 699999999887643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.78  E-value=3e-08  Score=84.32  Aligned_cols=60  Identities=20%  Similarity=0.241  Sum_probs=53.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+.+|||+|||+|.+++.++.+|. +|++||+|+.++ +.++++++.+++. +++++++|+.+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~   89 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSI-ANLERIKAAENLD-NLHTAVVDLNN   89 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHcCCC-cceEEecChhh
Confidence            567999999999999999998875 899999999999 9999999998885 48888888765

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.77  E-value=5.4e-08  Score=88.53  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      +.+.+.+.+.+..       .++.+|||+|||+|.++..++..+ .+|++||+|+.++ +.+++|+..++..++++++++
T Consensus        22 ~~i~~~Iv~~~~~-------~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li-~~l~~~~~~~~~~~~v~ii~~   92 (294)
T PTZ00338         22 PLVLDKIVEKAAI-------KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMV-AELKKRFQNSPLASKLEVIEG   92 (294)
T ss_pred             HHHHHHHHHhcCC-------CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHH-HHHHHHHHhcCCCCcEEEEEC
Confidence            3445555554432       367899999999999999988775 4799999999999 999999988876668999999


Q ss_pred             cHHHH
Q 027179          214 RVETF  218 (227)
Q Consensus       214 Da~~~  218 (227)
                      |+.+.
T Consensus        93 Dal~~   97 (294)
T PTZ00338         93 DALKT   97 (294)
T ss_pred             CHhhh
Confidence            99764

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.77  E-value=7.3e-08  Score=82.03  Aligned_cols=79  Identities=20%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      ...+.+.+.++.++....    ..++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++....+..+++++
T Consensus        43 ~~~~~~~~~~~~~l~~~~----~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~  116 (230)
T PRK07580         43 AGHQRMRDTVLSWLPADG----DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMV-EEARERAPEAGLAGNITF  116 (230)
T ss_pred             chHHHHHHHHHHHHHhcC----CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccCcEE
Confidence            334556666777775421    13567999999999999999988775 699999999999 999999988887667888


Q ss_pred             EEccH
Q 027179          211 HTVRV  215 (227)
Q Consensus       211 i~gDa  215 (227)
                      +.+|+
T Consensus       117 ~~~d~  121 (230)
T PRK07580        117 EVGDL  121 (230)
T ss_pred             EEcCc
Confidence            88884

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.76  E-value=3.9e-08  Score=84.02  Aligned_cols=64  Identities=14%  Similarity=0.021  Sum_probs=55.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ++.+|||+|||+|.+++.++.. ...+|++||+|+.++ +.+++|++.+++. +++++++|+.+.+.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~~l~  104 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGLT-NLRLLCGDAVEVLL  104 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCCC-CEEEEecCHHHHHH
Confidence            5679999999999999998765 335899999999999 9999999999884 69999999954443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.75  E-value=2.6e-08  Score=88.95  Aligned_cols=71  Identities=17%  Similarity=0.143  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD  214 (227)
                      .+.+.+++++..       .++.+|||+|||+|.++..++.++. +|++||+|+.++ +.+++|+..    ++++++++|
T Consensus        29 ~i~~~i~~~l~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~D   95 (272)
T PRK00274         29 NILDKIVDAAGP-------QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLA-PILAETFAE----DNLTIIEGD   95 (272)
T ss_pred             HHHHHHHHhcCC-------CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHH-HHHHHhhcc----CceEEEECh
Confidence            345555565543       3667999999999999999998875 899999999999 999987742    479999999


Q ss_pred             HHHH
Q 027179          215 VETF  218 (227)
Q Consensus       215 a~~~  218 (227)
                      +.++
T Consensus        96 ~~~~   99 (272)
T PRK00274         96 ALKV   99 (272)
T ss_pred             hhcC
Confidence            9864

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.75  E-value=5e-08  Score=83.54  Aligned_cols=61  Identities=15%  Similarity=0.082  Sum_probs=53.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.+++|++.+++. +++++++|+.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~  107 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGLH-NVELVHGNAME  107 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-ceEEEEechhc
Confidence            5689999999999999988764 3 35899999999999 9999999888874 69999999865

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02476 O-methyltransferase

Probab=98.74  E-value=1.1e-07  Score=86.21  Aligned_cols=68  Identities=15%  Similarity=0.063  Sum_probs=61.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ...++|||+|+|+|..++.++..  ..++|+++|.+++.+ +.|++|++++|+.++++++.+|+.+.|+++
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l  186 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSM  186 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            45789999999999999998863  235799999999999 999999999999989999999999999875

>PRK14968 putative methyltransferase; Provisional

Probab=98.74  E-value=5.2e-08  Score=79.98  Aligned_cols=63  Identities=21%  Similarity=0.278  Sum_probs=55.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~-v~~i~gDa~~~L  219 (227)
                      ++.+|||+|||+|.+++.++.++ .+|+++|++++++ +.+++|+..+++.++ +.++++|+.+.+
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~~   86 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSDLFEPF   86 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEeccccccc
Confidence            56799999999999999998885 5899999999999 999999999988644 889999986644

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.73  E-value=3.5e-08  Score=83.82  Aligned_cols=58  Identities=16%  Similarity=0.195  Sum_probs=49.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      .+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.++++++.+++.  +++..+|+.
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~~   87 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDIN   87 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccch
Confidence            457999999999999999998875 799999999999 9999999888873  566666653

Part of a tellurite-reducing operon tehA and tehB

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.73  E-value=7.5e-08  Score=88.74  Aligned_cols=63  Identities=13%  Similarity=0.092  Sum_probs=54.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.++..++..|+ +|++||.+++++ +.++++++..+...+++++++|+.+.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~dae~l  192 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTAEKL  192 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCHHHh
Confidence            3567999999999999998887775 799999999999 99999988776656799999998764

>PLN02244 tocopherol O-methyltransferase

Probab=98.73  E-value=5.2e-08  Score=89.69  Aligned_cols=62  Identities=18%  Similarity=0.151  Sum_probs=55.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++.....+|++||+++.++ +.++++++.+++.++++++++|+.+
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCccc
Confidence            5679999999999999998875334899999999999 9999999999987789999999865

>TIGR00740 methyltransferase, putative

Probab=98.71  E-value=1.7e-07  Score=81.36  Aligned_cols=63  Identities=10%  Similarity=-0.050  Sum_probs=53.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~---Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.+++.++..   ...+|++||+++.++ +.++++++..+...+++++++|+.+.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~~d~~~~  118 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILCNDIRHV  118 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECChhhC
Confidence            5679999999999999988864   245899999999999 99999998877656799999998753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.68  E-value=5.8e-08  Score=82.77  Aligned_cols=75  Identities=15%  Similarity=-0.027  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      +.+...+...+..       .++.+|||+|||+|.++..++..+ .+|++||+++.++ +.+++|++.+++. +++++++
T Consensus        64 p~~~~~l~~~l~~-------~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~-~~a~~~~~~~~~~-~v~~~~~  133 (212)
T PRK00312         64 PYMVARMTELLEL-------KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ-WEAKRRLKQLGLH-NVSVRHG  133 (212)
T ss_pred             HHHHHHHHHhcCC-------CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH-HHHHHHHHHCCCC-ceEEEEC
Confidence            3344445455543       367899999999999998777664 4899999999999 9999999999986 4999999


Q ss_pred             cHHHH
Q 027179          214 RVETF  218 (227)
Q Consensus       214 Da~~~  218 (227)
                      |+.+.
T Consensus       134 d~~~~  138 (212)
T PRK00312        134 DGWKG  138 (212)
T ss_pred             CcccC
Confidence            97653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.67  E-value=1.1e-07  Score=85.31  Aligned_cols=59  Identities=20%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|..++.++..|. +|++||+|+.++ +.+++|++.+++  +++++..|+.+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~  178 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINS  178 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhc
Confidence            456999999999999999998875 899999999999 999999999888  47777777654

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.65  E-value=3e-07  Score=79.77  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=68.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      .+........++..+...      ...++||++|||+|.-++.+|.. + .++|+.+|.+++.. +.|++|+++.|+.++
T Consensus        26 ~~~i~~~~g~lL~~l~~~------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~   98 (205)
T PF01596_consen   26 QMSISPETGQLLQMLVRL------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDR   98 (205)
T ss_dssp             GGSHHHHHHHHHHHHHHH------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGG
T ss_pred             CCccCHHHHHHHHHHHHh------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCc
Confidence            344444445555555432      35679999999999999999863 2 36899999999998 999999999999999


Q ss_pred             EEEEEccHHHHHHHHh
Q 027179          208 SSIHTVRVETFLERAE  223 (227)
Q Consensus       208 v~~i~gDa~~~L~~~~  223 (227)
                      ++++.+|+.+.|.++.
T Consensus        99 I~~~~gda~~~l~~l~  114 (205)
T PF01596_consen   99 IEVIEGDALEVLPELA  114 (205)
T ss_dssp             EEEEES-HHHHHHHHH
T ss_pred             EEEEEeccHhhHHHHH
Confidence            9999999999998764

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.65  E-value=1.2e-07  Score=87.52  Aligned_cols=65  Identities=17%  Similarity=-0.007  Sum_probs=55.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|||+|||||.+++.++.. + ..+|++||++++++ +.+++|++.++++ +++++++|+.+.+.
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~~-nV~~i~gD~~~~~~  145 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGIE-NVIFVCGDGYYGVP  145 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCChhhccc
Confidence            35689999999999999998864 2 24799999999999 9999999999985 69999999876543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.65  E-value=7.3e-08  Score=84.82  Aligned_cols=62  Identities=27%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||||.+++.++.. + ..+|+++|+++.++ +.+++.+...+.. +++++++|+.+
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~~da~~  109 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQGDAED  109 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE-BTTB
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEEcCHHH
Confidence            46789999999999999998864 3 35899999999999 9999999998876 79999999875

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.65  E-value=6.4e-08  Score=91.91  Aligned_cols=92  Identities=12%  Similarity=0.056  Sum_probs=67.4

Q ss_pred             EEE----Eecc--cCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEE
Q 027179          109 LQV----LGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVH  182 (227)
Q Consensus       109 L~i----i~G~--~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~  182 (227)
                      +++    |.|.  |+|..+.+.++..   +++    .+++.+..       .++.+|||+|||+|.+++.++.....+|+
T Consensus       228 ~~y~~~~i~~~~~f~g~~~~v~~~v~---~te----~l~~~~~~-------~~~~~vLDiGcG~G~~~~~la~~~~~~v~  293 (475)
T PLN02336        228 VQYKSSGILRYERVFGEGFVSTGGLE---TTK----EFVDKLDL-------KPGQKVLDVGCGIGGGDFYMAENFDVHVV  293 (475)
T ss_pred             hccccccHHHHHHHhCCCCCCCchHH---HHH----HHHHhcCC-------CCCCEEEEEeccCCHHHHHHHHhcCCEEE
Confidence            677    7663  7788777766532   233    33344332       35679999999999999988875334899


Q ss_pred             EEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          183 FVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       183 aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      +||+|+.++ +.+++|+.  +...+++++++|+.+
T Consensus       294 gvDiS~~~l-~~A~~~~~--~~~~~v~~~~~d~~~  325 (475)
T PLN02336        294 GIDLSVNMI-SFALERAI--GRKCSVEFEVADCTK  325 (475)
T ss_pred             EEECCHHHH-HHHHHHhh--cCCCceEEEEcCccc
Confidence            999999999 99999876  334468999999764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.63  E-value=5e-08  Score=86.83  Aligned_cols=63  Identities=19%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ..+.+|||+|||-|.++..+|+.|+ .|+++|+++.++ +.|+..+..+++.  ++..+..+++...
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I-~~Ak~ha~e~gv~--i~y~~~~~edl~~  120 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPI-EVAKLHALESGVN--IDYRQATVEDLAS  120 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHH-HHHHHhhhhcccc--ccchhhhHHHHHh
Confidence            4788999999999999999999995 899999999999 9999999999884  5555555555444

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.63  E-value=1.3e-07  Score=83.75  Aligned_cols=59  Identities=19%  Similarity=0.150  Sum_probs=51.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++++|||+|||+|.+++.++.++ .+|++||+|+.++ +.+++|+..   .++++++++|+.+
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~-~~l~~~~~~---~~~v~ii~~D~~~   86 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLA-EFLRDDEIA---AGNVEIIEGDALK   86 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHH-HHHHHHhcc---CCCEEEEEecccc
Confidence            357899999999999999998885 5899999999999 999988754   2479999999876

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.62  E-value=4e-07  Score=84.05  Aligned_cols=105  Identities=12%  Similarity=-0.016  Sum_probs=69.1

Q ss_pred             ccCCeee-cCCCCCC--CCCCHHHHHHHHHHHHHhcC-CCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHH
Q 027179          115 KARRKKL-LSPKGMD--VRPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPW  189 (227)
Q Consensus       115 ~~~Gr~L-~v~~g~~--~RPtte~v~ealf~~L~~~~-~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~  189 (227)
                      .+.|.+. .+|++.-  +-|..-.....+.+.|.... +......+.++||+|||+|.+...++.+ ...+++++|+|+.
T Consensus        70 ~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~  149 (321)
T PRK11727         70 HFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQ  149 (321)
T ss_pred             HhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHH
Confidence            4567774 7888753  33434333333434442210 0000124578999999999887766653 3358999999999


Q ss_pred             HHHHHHHHHHHHh-CCCCcEEEEE-ccHHHHHH
Q 027179          190 VVSNVLIPNLEWT-GFLDVSSIHT-VRVETFLE  220 (227)
Q Consensus       190 Al~~~ar~N~~~n-gl~~~v~~i~-gDa~~~L~  220 (227)
                      |+ +.|++|++.| ++.+++++++ .|..+.+.
T Consensus       150 Al-~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~  181 (321)
T PRK11727        150 AL-ASAQAIISANPGLNGAIRLRLQKDSKAIFK  181 (321)
T ss_pred             HH-HHHHHHHHhccCCcCcEEEEEccchhhhhh
Confidence            99 9999999999 8988898864 45444443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.61  E-value=1.5e-07  Score=83.75  Aligned_cols=64  Identities=20%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||+|..++.++..  ..++|+++|+++.++ +.+++|++++++. +++++++|+.++.
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~-~v~~~~~D~~~~~  135 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVL-NVAVTNFDGRVFG  135 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC-cEEEecCCHHHhh
Confidence            36789999999999999988763  235899999999999 9999999999986 5999999987643

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.59  E-value=1.6e-07  Score=84.65  Aligned_cols=63  Identities=21%  Similarity=0.251  Sum_probs=52.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+|.+|||+|||-|.+++.++.+ |+ +|++|.+|++-. +.+++.++..|+.+++++..+|..++
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~~~~  124 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDYRDL  124 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeecccc
Confidence            47889999999999999999987 76 899999999999 99999999999999999999998764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.58  E-value=1.7e-07  Score=89.02  Aligned_cols=64  Identities=9%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||+|.+++.++..  +..+|+++|+++.++ +.+++|++++|+.+ ++++++|+.+..
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~  314 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTN-IETKALDARKVH  314 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCCccccc
Confidence            35679999999999999998874  356899999999999 99999999999964 999999997754

>PRK04457 spermidine synthase; Provisional

Probab=98.58  E-value=3.7e-07  Score=81.48  Aligned_cols=67  Identities=18%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.++..++.. +..+|++||+|++.+ +.+++++...+..++++++.+|+.+++...
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~  133 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVH  133 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence            5678999999999999988764 456899999999999 999999876665568999999999998753

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.58  E-value=2e-07  Score=89.45  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=50.9

Q ss_pred             CCeEEEeccCCCHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRG-----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~G-----a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      +..|+|+|||+|.++..+++.+     +.+|+|||.|+.|+ ..+++-++.|+..++|+++++|+.++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v  253 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREV  253 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCC
Confidence            5789999999999998877654     67999999999998 66666668999989999999998763

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.57  E-value=1.1e-07  Score=71.83  Aligned_cols=57  Identities=25%  Similarity=0.242  Sum_probs=46.8

Q ss_pred             EEEeccCCCHHHHHHHHc---CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          159 WLDLYSGTGSVGIEAISR---GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       159 VLDLgsGTG~isI~aas~---Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      |||+|||+|.....++..   +. .++++||+|++++ +.++++....+.  +++++++|+.++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~l   61 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARDL   61 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTCH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhHC
Confidence            799999999999998865   32 6899999999999 999999988776  589999999774

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.57  E-value=2.2e-07  Score=83.64  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=54.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      +..+|||+|||+|.++++++++. ..+|+++|. +.++ +.+++|++..++.++++++.+|+++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~~~  210 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYK  210 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCccC
Confidence            45799999999999999998863 458999997 7888 9999999999998899999999874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.57  E-value=9.2e-08  Score=83.23  Aligned_cols=61  Identities=20%  Similarity=0.228  Sum_probs=54.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ..+.+.|||+|||.+++.|+.. +.+|++||.||.-. .++++|++.+|.. +++++.+|+.++
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~~-n~evv~gDA~~y   92 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGDV-NWEVVVGDARDY   92 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCCc-ceEEEecccccc
Confidence            4478999999999999988766 78999999999998 9999999999975 699999999653

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.56  E-value=1.3e-07  Score=88.33  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             CCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       153 ~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      +..++.|||+|||+|.++..++..|+++|++||.++-|  +.|++=++-|++.++|++|.|.+++
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MA--qyA~~Lv~~N~~~~rItVI~GKiEd  237 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMA--QYARKLVASNNLADRITVIPGKIED  237 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHH--HHHHHHHhcCCccceEEEccCcccc
Confidence            47889999999999999999999999999999998876  6999999999999999999998875

>PRK00811 spermidine synthase; Provisional

Probab=98.54  E-value=1.5e-06  Score=78.29  Aligned_cols=66  Identities=21%  Similarity=0.181  Sum_probs=57.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C--CCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F--LDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l--~~~v~~i~gDa~~~L~~  221 (227)
                      .+++|||+|||+|.++.++++. +..+|++||+|+..+ +.+++++...+  .  +.+++++.+|+.+++..
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~  146 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE  146 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhh
Confidence            5679999999999999999886 678999999999999 99999986542  2  35799999999999875

>PRK04266 fibrillarin; Provisional

Probab=98.53  E-value=4e-07  Score=79.87  Aligned_cols=60  Identities=15%  Similarity=0.007  Sum_probs=49.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||||.+++.++.. +.++|+++|++++++ +.+.++++..   .++.++.+|+.+
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml-~~l~~~a~~~---~nv~~i~~D~~~  131 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPM-RELLEVAEER---KNIIPILADARK  131 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhhc---CCcEEEECCCCC
Confidence            46789999999999999998875 345899999999998 8888887653   357888888754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.53  E-value=5.9e-07  Score=84.99  Aligned_cols=64  Identities=11%  Similarity=0.062  Sum_probs=56.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .+..+||+|||+|.+.+.+|.+ ....++|||+++.++ +.+.+++..+++. ++.++++|+..++.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~-NV~~i~~DA~~ll~  186 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLK-NLLIINYDARLLLE  186 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEECCHHHhhh
Confidence            4569999999999999999876 345899999999999 9999999999996 59999999987654

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.53  E-value=2.7e-07  Score=80.26  Aligned_cols=80  Identities=18%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      .+.+...+++.|..       .++.+|||+|||||.++--++.. |. .+|++||+++..+ +.+++|++..+.. ++++
T Consensus        57 ~P~~~a~~l~~L~l-------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~-nv~~  127 (209)
T PF01135_consen   57 APSMVARMLEALDL-------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGID-NVEV  127 (209)
T ss_dssp             -HHHHHHHHHHTTC--------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTH-SEEE
T ss_pred             HHHHHHHHHHHHhc-------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccC-ceeE
Confidence            44555666677764       47889999999999999877764 43 4799999999998 9999999999986 6999


Q ss_pred             EEccHHHHHHH
Q 027179          211 HTVRVETFLER  221 (227)
Q Consensus       211 i~gDa~~~L~~  221 (227)
                      +++|...-+..
T Consensus       128 ~~gdg~~g~~~  138 (209)
T PF01135_consen  128 VVGDGSEGWPE  138 (209)
T ss_dssp             EES-GGGTTGG
T ss_pred             EEcchhhcccc
Confidence            99998765443

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=98.51  E-value=4.5e-07  Score=81.20  Aligned_cols=64  Identities=23%  Similarity=0.282  Sum_probs=57.2

Q ss_pred             eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh------C--CCCcEEEEEccHHHHHHHHh
Q 027179          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT------G--FLDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n------g--l~~~v~~i~gDa~~~L~~~~  223 (227)
                      +|||+++|+|..|++++++|+. |++||.++.+. .++++|++..      +  +..+++++++|+.++|....
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~  162 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence            8999999999999999999986 99999999998 9999999984      2  22579999999999998643

>TIGR03438 probable methyltransferase

Probab=98.51  E-value=4.9e-07  Score=81.87  Aligned_cols=67  Identities=7%  Similarity=-0.158  Sum_probs=53.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||||||||..+..++...  ..+|++||+|++++ +.+++++....-..++.++++|+.+.+.-.
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~  131 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQLEVHGICADFTQPLALP  131 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence            45789999999999999888764  35899999999999 999999876432235788999998765433

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.51  E-value=6e-07  Score=76.04  Aligned_cols=62  Identities=21%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..+  ..+|+++|+++.++ +.+++|+..++..++++++.+|+.+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~  114 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEA  114 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEeccccc
Confidence            56799999999999999988765  37899999999999 9999999887666678888888765

>PRK08317 hypothetical protein; Provisional

Probab=98.50  E-value=8.5e-07  Score=74.58  Aligned_cols=78  Identities=14%  Similarity=0.080  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      ||-.+.+++.++..+..       .++.+|||+|||+|.+++.++...  ..+|+++|.++..+ +.++++...  ...+
T Consensus         1 ~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~--~~~~   70 (241)
T PRK08317          1 LPDFRRYRARTFELLAV-------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAG--LGPN   70 (241)
T ss_pred             CchHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhC--CCCc
Confidence            45566667667666553       357899999999999999988652  46899999999998 899988332  2245


Q ss_pred             EEEEEccHHH
Q 027179          208 SSIHTVRVET  217 (227)
Q Consensus       208 v~~i~gDa~~  217 (227)
                      ++++.+|+.+
T Consensus        71 ~~~~~~d~~~   80 (241)
T PRK08317         71 VEFVRGDADG   80 (241)
T ss_pred             eEEEeccccc
Confidence            7788877653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.49  E-value=4.2e-07  Score=91.35  Aligned_cols=83  Identities=20%  Similarity=0.205  Sum_probs=65.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-------------------------------
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-------------------------------  177 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-------------------------------  177 (227)
                      +=|..|.++.+++... ..     ...+..++|.+||||+|.||+|..+                               
T Consensus       170 ~Apl~etlAaa~l~~a-~w-----~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~  243 (702)
T PRK11783        170 EAPLKENLAAAILLRS-GW-----PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE  243 (702)
T ss_pred             CCCCcHHHHHHHHHHc-CC-----CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence            3355677777766432 11     0246799999999999999997521                               


Q ss_pred             ------------CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          178 ------------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       178 ------------a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                                  ..+++++|+|+.++ +.|++|++.+|+.++++++++|+.+.
T Consensus       244 a~~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~~g~~~~i~~~~~D~~~~  295 (702)
T PRK11783        244 AQERARAGLAELPSKFYGSDIDPRVI-QAARKNARRAGVAELITFEVKDVADL  295 (702)
T ss_pred             HHHHHhhcccccCceEEEEECCHHHH-HHHHHHHHHcCCCcceEEEeCChhhc
Confidence                        12699999999999 99999999999988899999999874

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.49  E-value=7.5e-07  Score=79.14  Aligned_cols=63  Identities=16%  Similarity=0.116  Sum_probs=49.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHH--hCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~--ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||||.+++.++.. + ..+|++||+|++++ +.++++...  .+..++++++++|+.+
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d~~~  138 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGDATD  138 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEccccc
Confidence            35779999999999999988764 3 35899999999999 999877542  2223468999999865

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.49  E-value=5.5e-07  Score=79.29  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD  214 (227)
                      .+.+.+++.+..       .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.++++...   ..+++++++|
T Consensus        16 ~i~~~i~~~~~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~-~~l~~~~~~---~~~v~v~~~D   83 (253)
T TIGR00755        16 SVIQKIVEAANV-------LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLA-EILRKLLSL---YERLEVIEGD   83 (253)
T ss_pred             HHHHHHHHhcCC-------CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHH-HHHHHHhCc---CCcEEEEECc
Confidence            445555555532       3578999999999999999988874 699999999999 899887743   3479999999


Q ss_pred             HHH
Q 027179          215 VET  217 (227)
Q Consensus       215 a~~  217 (227)
                      +.+
T Consensus        84 ~~~   86 (253)
T TIGR00755        84 ALK   86 (253)
T ss_pred             hhc
Confidence            875

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.49  E-value=3.6e-07  Score=83.17  Aligned_cols=67  Identities=18%  Similarity=0.069  Sum_probs=59.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .+|++|||+|||-|.+++.+|.+-..+|++|++|++.. +.+++-++.-|++++++++..|..++-+.
T Consensus        71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~~e~  137 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDFEEP  137 (283)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEeccccccccc
Confidence            57899999999999999999987334899999999999 99999999999998899999998776554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.48  E-value=5.4e-07  Score=85.36  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=54.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|..++.++..+. .+|+++|+++.++ +.+++|++.+|+.  ++++++|+.+.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~  305 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDP  305 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccc
Confidence            4678999999999999999987643 5899999999999 9999999999984  68999998754

>PHA03412 putative methyltransferase; Provisional

Probab=98.48  E-value=4.1e-07  Score=81.06  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=47.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~----Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+.+|||+|||||.+++.++.+    ...+|++||+|+.|+ +++++|..      ++.++++|+..
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~------~~~~~~~D~~~  108 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVP------EATWINADALT  108 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhcc------CCEEEEcchhc
Confidence            4579999999999999998763    345899999999999 99998852      37899999875

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.48  E-value=6.3e-07  Score=85.06  Aligned_cols=64  Identities=16%  Similarity=0.097  Sum_probs=56.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||+|..++.++..  +.++|+++|+++..+ +.+++|++.+|+. +++++++|+.+..
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~-~v~~~~~D~~~~~  316 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLK-SIKILAADSRNLL  316 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCC-eEEEEeCChhhcc
Confidence            36789999999999999998864  346899999999999 9999999999996 4999999998654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.45  E-value=1.3e-06  Score=78.02  Aligned_cols=63  Identities=21%  Similarity=0.130  Sum_probs=52.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+|.+||+-|+|||+++..+++.  ..++|+..|+.++-+ +.|++|++.+|+.+++++.+.|+.+
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCE  103 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceec
Confidence            57899999999999999998863  347899999999999 9999999999998899999999963

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.45  E-value=8.1e-07  Score=78.34  Aligned_cols=62  Identities=26%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|..++.++.. |. .+|++||+++.++ +.+++|.+.+++. +++++++|+.+
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~-~v~~~~~d~~~  139 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYT-NVEFRLGEIEA  139 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCC-CEEEEEcchhh
Confidence            36789999999999998876653 44 4799999999999 9999999998885 68999998764

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.44  E-value=1.1e-06  Score=83.78  Aligned_cols=63  Identities=11%  Similarity=0.052  Sum_probs=55.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|..++.++..  +..+|+++|+++..+ +.+++|+++.|+. +++++++|+.++
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~-~v~~~~~Da~~l  300 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLS-SIEIKIADAERL  300 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhhh
Confidence            46789999999999999988764  346899999999999 9999999999986 599999999764

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.43  E-value=8.1e-07  Score=75.72  Aligned_cols=59  Identities=22%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             CeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      ++|||+|||+|.+++.++... ..+|+++|+|+..+ +.+++|+...++.++++++.+|+.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~   60 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSA   60 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccc
Confidence            379999999999999988753 45899999999999 999999999998888999998874

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.43  E-value=1.2e-06  Score=75.71  Aligned_cols=60  Identities=27%  Similarity=0.377  Sum_probs=48.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.++||||||.|.-++.+|++|. .|+++|+|+.++ +.+++-++..+++  ++..+.|+.+
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al-~~l~~~a~~~~l~--i~~~~~Dl~~   88 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVAL-EKLQRLAEEEGLD--IRTRVADLND   88 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHH-HHHHHHHHHTT-T--EEEEE-BGCC
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHhhcCce--eEEEEecchh
Confidence            4667999999999999999999997 699999999999 9999988888884  7788877643

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.42  E-value=1.1e-06  Score=80.60  Aligned_cols=63  Identities=14%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..+++|||+|||+|.+++.++..|+.+|++||.++..+ ...+...+..+...+++++.+|+.+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l-~q~~a~~~~~~~~~~i~~~~~d~e~  183 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL-CQFEAVRKLLGNDQRAHLLPLGIEQ  183 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHhcCCCCCeEEEeCCHHH
Confidence            46789999999999999999988888899999999876 5444333333323468888888765

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.41  E-value=8.5e-07  Score=84.45  Aligned_cols=64  Identities=13%  Similarity=0.086  Sum_probs=55.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||+|..++.++..  +..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++.
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~-~v~~~~~Da~~~~  314 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGIT-IIETIEGDARSFS  314 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCC-eEEEEeCcccccc
Confidence            36789999999999999887753  345899999999999 9999999999985 6999999987653

>PHA03411 putative methyltransferase; Provisional

Probab=98.41  E-value=9.3e-07  Score=80.33  Aligned_cols=58  Identities=24%  Similarity=0.269  Sum_probs=48.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ...+|||+|||+|.+++.++.+ +..+|++||+|+.++ +.+++|.      .+++++++|+.++.
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~------~~v~~v~~D~~e~~  122 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLL------PEAEWITSDVFEFE  122 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhC------cCCEEEECchhhhc
Confidence            3468999999999999988775 346899999999999 9999874      25789999998865

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.41  E-value=6.9e-07  Score=83.26  Aligned_cols=80  Identities=28%  Similarity=0.266  Sum_probs=64.9

Q ss_pred             CCCCCH--HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          128 DVRPMM--EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       128 ~~RPtt--e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      +.||++  +.+..++.|....       .+|..|||-|||||+|-|+|...|+ +|++.|++..++ +-++.|++..+++
T Consensus       175 f~~p~s~~P~lAR~mVNLa~v-------~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv-~gak~Nl~~y~i~  245 (347)
T COG1041         175 FFRPGSMDPRLARAMVNLARV-------KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMV-RGAKINLEYYGIE  245 (347)
T ss_pred             ccCcCCcCHHHHHHHHHHhcc-------ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHH-hhhhhhhhhhCcC
Confidence            445433  5677777666553       5788999999999999999988887 799999999999 9999999999987


Q ss_pred             CcEEEEEc-cHHH
Q 027179          206 DVSSIHTV-RVET  217 (227)
Q Consensus       206 ~~v~~i~g-Da~~  217 (227)
                      + +.++.. ||.+
T Consensus       246 ~-~~~~~~~Da~~  257 (347)
T COG1041         246 D-YPVLKVLDATN  257 (347)
T ss_pred             c-eeEEEeccccc
Confidence            4 666666 7754

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.39  E-value=1.1e-06  Score=83.22  Aligned_cols=63  Identities=11%  Similarity=0.071  Sum_probs=53.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|..++.++.. +..+|+++|+++..+ +.+++|++++|+..+++++.+|..+
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~~~v~~~~~d~~~  300 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLTIKAETKDGDGRG  300 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEecccccc
Confidence            46789999999999999998874 446899999999999 9999999999986445567788653

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.38  E-value=6.9e-07  Score=76.91  Aligned_cols=82  Identities=13%  Similarity=-0.003  Sum_probs=54.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      ...|..++.+....+.++.....  ...++.+|||+|||+|.++..++.. +..++++||+|+.++ +.+++|..     
T Consensus        17 ~~~rn~~~~~~~~~~~~~~~~l~--~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~-----   88 (204)
T TIGR03587        17 YIDRNSRQSLVAAKLAMFARALN--RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP-----   88 (204)
T ss_pred             hhhccccHHHHHHHHHHHHHHHH--hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC-----
Confidence            45666666555444444322100  0135678999999999999988765 446899999999999 99988642     


Q ss_pred             CcEEEEEccHHH
Q 027179          206 DVSSIHTVRVET  217 (227)
Q Consensus       206 ~~v~~i~gDa~~  217 (227)
                       +++++++|+.+
T Consensus        89 -~~~~~~~d~~~   99 (204)
T TIGR03587        89 -NINIIQGSLFD   99 (204)
T ss_pred             -CCcEEEeeccC
Confidence             24455555543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.37  E-value=9.4e-07  Score=74.08  Aligned_cols=64  Identities=30%  Similarity=0.400  Sum_probs=45.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--CCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l~~~v~~i~gDa~~~L  219 (227)
                      ..+.+||+||||+|..|+.++.. ++.+|++-|.++ ++ +.++.|++.|+  ...++++..-|+.+.+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~  110 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDEL  110 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-H
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCcc
Confidence            57889999999999999999987 778999999999 88 99999999998  5567888888775533

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=2.2e-06  Score=74.97  Aligned_cols=76  Identities=14%  Similarity=0.073  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      +...+.++|..       .++++||++|||||.-+--++... .+|+.||++++-+ +.|++|++..|+.| +.++++|.
T Consensus        60 ~vA~m~~~L~~-------~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~-~~A~~~L~~lg~~n-V~v~~gDG  129 (209)
T COG2518          60 MVARMLQLLEL-------KPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELA-EQARRNLETLGYEN-VTVRHGDG  129 (209)
T ss_pred             HHHHHHHHhCC-------CCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHH-HHHHHHHHHcCCCc-eEEEECCc
Confidence            33445566654       478999999999999988777664 3899999999998 99999999999975 99999998


Q ss_pred             HHHHHH
Q 027179          216 ETFLER  221 (227)
Q Consensus       216 ~~~L~~  221 (227)
                      ..-+..
T Consensus       130 ~~G~~~  135 (209)
T COG2518         130 SKGWPE  135 (209)
T ss_pred             ccCCCC
Confidence            654443

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.35  E-value=3.3e-06  Score=78.54  Aligned_cols=78  Identities=14%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      +++.++.+++.+++.+...      .++.+|||+|||||.+++.++.. +..+|+++|.++.++ +.+++|....    +
T Consensus        93 ~~~~~e~~r~~~l~~~~l~------~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~~----~  161 (340)
T PLN02490         93 PGHWTEDMRDDALEPADLS------DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLK----E  161 (340)
T ss_pred             cCcchHHHHHHHHhhcccC------CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhcc----C
Confidence            4556777777666654321      35679999999999999988764 446899999999999 8999886532    4


Q ss_pred             EEEEEccHHH
Q 027179          208 SSIHTVRVET  217 (227)
Q Consensus       208 v~~i~gDa~~  217 (227)
                      ++++++|+.+
T Consensus       162 i~~i~gD~e~  171 (340)
T PLN02490        162 CKIIEGDAED  171 (340)
T ss_pred             CeEEeccHHh
Confidence            6677777754

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.35  E-value=1.9e-06  Score=76.70  Aligned_cols=59  Identities=17%  Similarity=0.028  Sum_probs=47.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      .++.+|||+|||+|.++..++.....+|+++|+++.++ +.++++...   .++++++++|+.
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~D~~  109 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-NIAKLRNSD---KNKIEFEANDIL  109 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-HHHHHHcCc---CCceEEEECCcc
Confidence            36689999999999999888764334899999999999 899987653   246788888865

>TIGR00417 speE spermidine synthase

Probab=98.34  E-value=1.1e-05  Score=71.85  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~  222 (227)
                      .+++||++|||+|.++.++++.+ ..+|++||+|+..+ +.+++++...+  + ..+++++.+|+.++++..
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~  142 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT  142 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhC
Confidence            45699999999999999888764 67899999999999 99999875543  2 247899999999988753

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.34  E-value=1.1e-06  Score=76.29  Aligned_cols=59  Identities=15%  Similarity=0.027  Sum_probs=47.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--------------CCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl--------------~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||.|.-++.+|.+|. .|++||+|+.|+ +.+.+   .+++              ..+++++++|++++
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai-~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~  106 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAV-EQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL  106 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHH-HHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence            457999999999999999999987 699999999999 77533   1221              23588999999764

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.34  E-value=1.7e-06  Score=68.52  Aligned_cols=57  Identities=16%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             eEEEeccCCCHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          158 RWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~Ga~-~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      .++|+|||+|.+++.++..+.. +|+++|.++.++ +.+++|++.|++. ++++++..+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~~-~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNLP-NVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCCC-cEEEEEeeee
Confidence            4899999999999998877653 899999999999 9999999999986 4888877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PLN02366 spermidine synthase

Probab=98.33  E-value=1.1e-05  Score=73.94  Aligned_cols=110  Identities=19%  Similarity=0.156  Sum_probs=73.1

Q ss_pred             eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeC
Q 027179          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEM  186 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEi  186 (227)
                      .+.++.-.-.|+.|.+....+.-...+..-.+++..+....    ...+++||++|||.|.+..++++. +..+|+.||+
T Consensus        48 ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~----~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEi  123 (308)
T PLN02366         48 DVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCS----IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEI  123 (308)
T ss_pred             eEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhh----CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEEC
Confidence            44444444446665554433322222333333433332211    135689999999999999999876 4578999999


Q ss_pred             CHHHHHHHHHHHHHHh--CCC-CcEEEEEccHHHHHHHH
Q 027179          187 DPWVVSNVLIPNLEWT--GFL-DVSSIHTVRVETFLERA  222 (227)
Q Consensus       187 s~~Al~~~ar~N~~~n--gl~-~~v~~i~gDa~~~L~~~  222 (227)
                      |+..+ +.+++.+...  +++ .+++++.+|+.++++..
T Consensus       124 D~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~  161 (308)
T PLN02366        124 DKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA  161 (308)
T ss_pred             CHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhc
Confidence            99999 9999987653  233 48999999999999764

>TIGR00452 methyltransferase, putative

Probab=98.33  E-value=6.3e-06  Score=75.83  Aligned_cols=63  Identities=11%  Similarity=0.083  Sum_probs=46.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++++|||+|||+|.+.+.++..|+.+|++||.++.++ ..++...+..+...++.++.+|+.+
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml-~q~~~~~~~~~~~~~v~~~~~~ie~  182 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL-CQFEAVRKLLDNDKRAILEPLGIEQ  182 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHHhccCCCeEEEECCHHH
Confidence            56789999999999999998888888899999999887 5544332322222356666666543

Known examples to date are restricted to the proteobacteria.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.32  E-value=5.9e-06  Score=73.73  Aligned_cols=68  Identities=7%  Similarity=0.053  Sum_probs=60.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ...++||++|+++|.-++.++..  ..++|+.+|.+++.+ +.|++|++..|+.++|+++.||+.+.|.++
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l  147 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQM  147 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHH
Confidence            35679999999999999988753  235899999999998 999999999999999999999999999886

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.32  E-value=1.8e-06  Score=75.31  Aligned_cols=57  Identities=14%  Similarity=0.208  Sum_probs=46.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.++..++.. +..+|++||+++.++ +.++++.      .+++++.+|+.++
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~------~~~~~~~~d~~~~   88 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRL------PDCQFVEADIASW   88 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhC------CCCeEEECchhcc
Confidence            5679999999999999988865 346899999999999 8988764      2467888887653

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.31  E-value=2.3e-06  Score=80.76  Aligned_cols=80  Identities=20%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCC-------------------------------
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS-------------------------------  179 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~-------------------------------  179 (227)
                      |-.|.++.+++. +...      .++..++|..||||+|.||+|..+..                               
T Consensus       174 pLketLAaAil~-lagw------~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~  246 (381)
T COG0116         174 PLKETLAAAILL-LAGW------KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE  246 (381)
T ss_pred             CchHHHHHHHHH-HcCC------CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence            445666655542 2221      24468999999999999999976531                               


Q ss_pred             ---------EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          180 ---------EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       180 ---------~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                               ..+++|+|+.++ +.|+.|++..|+.+.|+|.++|+.++
T Consensus       247 ~a~~~~~~~~~~G~Did~r~i-~~Ak~NA~~AGv~d~I~f~~~d~~~l  293 (381)
T COG0116         247 RARRGKELPIIYGSDIDPRHI-EGAKANARAAGVGDLIEFKQADATDL  293 (381)
T ss_pred             HHhhcCccceEEEecCCHHHH-HHHHHHHHhcCCCceEEEEEcchhhC
Confidence                     377999999999 99999999999999999999998754

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.31  E-value=1.5e-06  Score=75.79  Aligned_cols=59  Identities=19%  Similarity=0.084  Sum_probs=48.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--------------CCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl--------------~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||.|.-++.+|.+|. +|++||+++.|+ +.+.+   .+++              ..+++++++|+++.
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai-~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAV-EQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHH-HHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence            457999999999999999999987 699999999999 76532   2222              24689999999865

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.31  E-value=2.1e-06  Score=75.22  Aligned_cols=56  Identities=20%  Similarity=0.162  Sum_probs=45.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.++..++.+. ..+|+++|+|+.++ +.++++        +++++++|+.++
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~--------~~~~~~~d~~~~   84 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER--------GVDARTGDVRDW   84 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc--------CCcEEEcChhhC
Confidence            356899999999999999988762 35899999999999 888753        356788887654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.30  E-value=1.9e-06  Score=75.03  Aligned_cols=43  Identities=21%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      +..+|||+|||+|.++..++..| .+|+++|+|+.++ +.++++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l-~~a~~~~   84 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPML-AQARQKD   84 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHH-HHHHhhC
Confidence            46789999999999999887776 4899999999999 8988874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=4.7e-06  Score=74.84  Aligned_cols=66  Identities=18%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|+|.|.|||+++..++. .| .++|+.+|+.++-+ +.|++|++.+++.|++++..+|+.+...
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~  160 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDRVTLKLGDVREGID  160 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccceEEEecccccccc
Confidence            5889999999999999999885 23 47999999999999 9999999999999889999999877543

>PRK04148 hypothetical protein; Provisional

Probab=98.26  E-value=3.2e-06  Score=69.30  Aligned_cols=53  Identities=13%  Similarity=0.087  Sum_probs=44.3

Q ss_pred             CCCeEEEeccCCCH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGS-VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~-isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+++|+|||+|. ++..++..|. .|+++|+|+.++ +.++++    +    ++++++|+++
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV-~~a~~~----~----~~~v~dDlf~   69 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV-EKAKKL----G----LNAFVDDLFN   69 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHh----C----CeEEECcCCC
Confidence            45789999999995 9998887785 899999999998 777665    2    4688888875

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.26  E-value=4.7e-06  Score=76.27  Aligned_cols=79  Identities=15%  Similarity=0.109  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i  211 (227)
                      +.+.+++++.+..       .++..++|++||.|..+.+++...  ..+|+|+|.|++|+ +.+++++..   .++++++
T Consensus         5 pVll~Evl~~L~~-------~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L~~---~~ri~~i   73 (296)
T PRK00050          5 PVLLDEVVDALAI-------KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRLKP---FGRFTLV   73 (296)
T ss_pred             cccHHHHHHhhCC-------CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhhcc---CCcEEEE
Confidence            4455666666653       356799999999999999999863  46899999999999 999988755   3589999


Q ss_pred             EccHHHHHHHHh
Q 027179          212 TVRVETFLERAE  223 (227)
Q Consensus       212 ~gDa~~~L~~~~  223 (227)
                      ++|..++...+.
T Consensus        74 ~~~f~~l~~~l~   85 (296)
T PRK00050         74 HGNFSNLKEVLA   85 (296)
T ss_pred             eCCHHHHHHHHH
Confidence            999988766553

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.26  E-value=1.3e-06  Score=63.01  Aligned_cols=53  Identities=23%  Similarity=0.275  Sum_probs=41.4

Q ss_pred             EEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       160 LDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ||+|||+|..+..++..+..+|+++|+++.++ +.++++....+    +.++++|+.+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~----~~~~~~d~~~   53 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEG----VSFRQGDAED   53 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTST----EEEEESBTTS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccC----chheeehHHh
Confidence            89999999999999988667999999999999 88888775443    4466666543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.24  E-value=5.6e-06  Score=58.68  Aligned_cols=61  Identities=21%  Similarity=0.174  Sum_probs=49.5

Q ss_pred             eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      +++|+|||+|.++..++.....+++++|.++.++ +.++++.+.+.. .+++++++|+.+...
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~   61 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALLA-DNVEVLKGDAEELPP   61 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhcccc-cceEEEEcChhhhcc
Confidence            4899999999999988875567999999999998 888865544443 468999999887653

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.24  E-value=1.3e-06  Score=78.93  Aligned_cols=47  Identities=19%  Similarity=0.139  Sum_probs=41.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      ..+.+|||+|||+|.+++.+|+.|+ +|++||.++.++ +.|++....+
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V-~vA~~h~~~d  134 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMV-EVANEHKKMD  134 (282)
T ss_pred             cCCceEEEeccCccccchhhHhhCC-eeEeecccHHHH-HHHHHhhhcC
Confidence            3467899999999999999999986 799999999999 9999985443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.22  E-value=7.6e-07  Score=77.59  Aligned_cols=59  Identities=31%  Similarity=0.457  Sum_probs=53.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      ..+++|||+|+|+|..+|+++..|++.|++.|++|... ..++-|++.|++.  +.++..|.
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~--i~~~~~d~  136 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVS--ILFTHADL  136 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccce--eEEeeccc
Confidence            57899999999999999999999999999999999998 9999999999973  66766664

>PRK03612 spermidine synthase; Provisional

Probab=98.21  E-value=3.1e-06  Score=82.38  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=55.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHh-----CCC-CcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWT-----GFL-DVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~n-----gl~-~~v~~i~gDa~~~L~~~  222 (227)
                      ++++|||+|||+|.++.++++.+. .+|++||+|++.+ +.+++|....     .++ .+++++.+|+.++++..
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~  370 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL  370 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC
Confidence            567999999999999999888754 7999999999999 9999964321     232 47999999999998754

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.19  E-value=9.3e-06  Score=68.05  Aligned_cols=60  Identities=20%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.++..++..+.  .+++++|+++.++ +.+++|..   ..++++++.+|+.+.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~~~  100 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAEAL  100 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchhcC
Confidence            578999999999999999887654  4899999999998 89998875   234678888887653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.19  E-value=1.3e-05  Score=68.81  Aligned_cols=62  Identities=18%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||+|.+++.+++.++ +|+++|.++.++ +.+++|+...+.  +++++.+|+.+..
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~  108 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELA  108 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhh
Confidence            4677999999999999998888775 799999999999 999999887776  4788888887664

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.19  E-value=9.6e-06  Score=68.84  Aligned_cols=62  Identities=18%  Similarity=0.089  Sum_probs=53.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .+.+|||+|||+|.++..++..++ +|+++|.++.++ +.+++|+..++.. +++++++|+.++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~  106 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLA  106 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhh
Confidence            477999999999999998887765 699999999999 9999999888764 5788888887654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=1.7e-05  Score=72.28  Aligned_cols=98  Identities=18%  Similarity=0.138  Sum_probs=79.7

Q ss_pred             EEecccCCeeecCCCCC---CCCCCHHHHHHH---------------HHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHH
Q 027179          111 VLGGKARRKKLLSPKGM---DVRPMMEVVKGA---------------AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE  172 (227)
Q Consensus       111 ii~G~~~Gr~L~v~~g~---~~RPtte~v~ea---------------lf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~  172 (227)
                      -|.|+++|.++....|.   ..|||.|.-..+               ++.+|..       .++.+|++-|+|||+++.+
T Consensus        50 ~iIGK~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i-------~PGsvV~EsGTGSGSlSha  122 (314)
T KOG2915|consen   50 DIIGKPYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEI-------RPGSVVLESGTGSGSLSHA  122 (314)
T ss_pred             heecCCccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhcC-------CCCCEEEecCCCcchHHHH
Confidence            35689999999998884   488999864433               2334432       5789999999999999998


Q ss_pred             HHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          173 AISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       173 aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      +++.  .-++++..|....-. +.+++-.+..++.+++++++-|+.
T Consensus       123 iaraV~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc  167 (314)
T KOG2915|consen  123 IARAVAPTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVC  167 (314)
T ss_pred             HHHhhCcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecc
Confidence            8764  237899999999888 899999999999999999988874

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.17  E-value=4e-06  Score=72.76  Aligned_cols=61  Identities=20%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             CeEEEeccCCCHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~Ga~-~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+|||||||.|.+=..+++.|.. ..++||.++.|+ ++|+.-+++++++|.|++.+.|+.+.
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~  130 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDP  130 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCC
Confidence            39999999999999999988754 499999999999 99888889999998899999998763

>PRK05785 hypothetical protein; Provisional

Probab=98.15  E-value=8.4e-06  Score=71.08  Aligned_cols=43  Identities=16%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN  198 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N  198 (227)
                      .+.+|||+|||||.++..++.....+|++||+|++++ +.+++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~   93 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVA   93 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhc
Confidence            3679999999999999998876335899999999999 888764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.15  E-value=1.2e-05  Score=75.72  Aligned_cols=59  Identities=17%  Similarity=0.029  Sum_probs=47.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.....+|++||+|++++ +.++++++  ++  .+++..+|+.+
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-~~A~~~~~--~l--~v~~~~~D~~~  224 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-KLAQERCA--GL--PVEIRLQDYRD  224 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc--cC--eEEEEECchhh
Confidence            36789999999999999998875324899999999999 99999884  33  36666666543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.15  E-value=2.1e-05  Score=69.29  Aligned_cols=67  Identities=18%  Similarity=0.102  Sum_probs=60.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE-ccHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLER  221 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~-gDa~~~L~~  221 (227)
                      ...+++|++|++.|.-++.+|.. . ..+++.+|.+++.+ +.|++|+++.|+.++++++. +|+.+.+.+
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSR  127 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence            46789999999999999998863 2 56899999999999 99999999999999999999 699998876

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.15  E-value=8.6e-06  Score=71.88  Aligned_cols=46  Identities=24%  Similarity=0.188  Sum_probs=38.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      .++.+|||+|||||.|+..++..|+.+|++||.++..+....++|.
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~  119 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE  119 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC
Confidence            5778999999999999999999999999999999977623355543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PLN03075 nicotianamine synthase; Provisional

Probab=98.14  E-value=5.8e-06  Score=75.73  Aligned_cols=64  Identities=17%  Similarity=0.092  Sum_probs=52.0

Q ss_pred             CCCeEEEeccCCCHH-HHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSV-GIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~i-sI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~-ngl~~~v~~i~gDa~~~L  219 (227)
                      .+++|+|+|||.|.+ ++-++.  ....+++++|+|++++ +.|+++++. .++.++++|+++|+.+..
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~  190 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVT  190 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhcc
Confidence            678999999997755 443332  2346899999999999 999999965 888888999999998754

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=1e-05  Score=72.90  Aligned_cols=60  Identities=18%  Similarity=0.223  Sum_probs=50.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+++.||++|+|.|+++.+++.+++ +|++||+|+..+ +.+++...   ..++++++++|+.++
T Consensus        29 ~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~-~~L~~~~~---~~~n~~vi~~DaLk~   88 (259)
T COG0030          29 SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLA-EVLKERFA---PYDNLTVINGDALKF   88 (259)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHH-HHHHHhcc---cccceEEEeCchhcC
Confidence            3578999999999999999998875 699999999998 78776554   335799999999763

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.13  E-value=9.4e-06  Score=68.38  Aligned_cols=54  Identities=17%  Similarity=0.032  Sum_probs=41.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++..+...+++||++++++ +.++++        +++++++|+.+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~~--------~~~~~~~d~~~   66 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVAR--------GVNVIQGDLDE   66 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHHc--------CCeEEEEEhhh
Confidence            4579999999999999887765445789999999998 776542        24567777655

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=1.6e-05  Score=68.77  Aligned_cols=64  Identities=13%  Similarity=0.105  Sum_probs=56.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ....++++|||||.++-.+++.  +.....+.|+||+|+ +..++-++.|+.  ++++++.|+.+.|+.
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~--~~~~V~tdl~~~l~~  108 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRV--HIDVVRTDLLSGLRN  108 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCC--ccceeehhHHhhhcc
Confidence            3678999999999999988874  445789999999999 999999999997  489999999988875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.11  E-value=1.1e-05  Score=69.75  Aligned_cols=59  Identities=24%  Similarity=0.125  Sum_probs=45.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .++.+|||||||.|.+--.+......++++||++++.+ ..+.    .+|    +.++++|+.+-|..
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v-~~cv----~rG----v~Viq~Dld~gL~~   70 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV-AACV----ARG----VSVIQGDLDEGLAD   70 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH-HHHH----HcC----CCEEECCHHHhHhh
Confidence            36789999999999998776653334799999999987 4433    244    45899999887764

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.10  E-value=1.8e-05  Score=66.72  Aligned_cols=57  Identities=18%  Similarity=0.160  Sum_probs=44.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+.+|||+|||+|.++..++..+ ..+++++|+++.++ +.++++..     .+++++.+|+.+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~~   91 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAEK   91 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchhh
Confidence            45789999999999999988765 35699999999998 78776653     246677777654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06202 hypothetical protein; Provisional

Probab=98.05  E-value=6.8e-06  Score=70.96  Aligned_cols=48  Identities=31%  Similarity=0.428  Sum_probs=39.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHH----cC-CCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS----RG-CSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas----~G-a~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      .+.+|||+|||+|.++..++.    .| ..+|++||+++.++ +.++++...++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~  112 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPG  112 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCC
Confidence            567999999999999988764    23 24899999999999 99998865444

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.04  E-value=2.3e-05  Score=67.26  Aligned_cols=66  Identities=18%  Similarity=0.096  Sum_probs=55.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ....+||+|||.|.+.+++|.. ....++|||+....+ ..+.+.+...++. |+.++++|+..++..+
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~   83 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGLK-NVRFLRGDARELLRRL   83 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTTS-SEEEEES-CTTHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhccc-ceEEEEccHHHHHhhc
Confidence            3448999999999999999875 457899999999999 9999999999986 6999999999888754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=98.03  E-value=1.4e-06  Score=80.20  Aligned_cols=61  Identities=26%  Similarity=0.375  Sum_probs=53.8

Q ss_pred             CCCCeEEEeccCCCHHHH-HHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          154 LRPGRWLDLYSGTGSVGI-EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI-~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      ..+..|+|||+|-|.|.+ .+.+.||+.|+|.|.||+++ +.+++|++.|++.++..++.+|-
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~  254 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMDRCRITEGDN  254 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHHHHHhhhccc
Confidence            466899999999999999 55678999999999999999 99999999999877776777664

>PRK06922 hypothetical protein; Provisional

Probab=98.02  E-value=1.9e-05  Score=79.12  Aligned_cols=60  Identities=10%  Similarity=0.020  Sum_probs=50.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++.. ...+|+++|+++.++ +.++++....+.  +++++++|+.+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~d  478 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAIN  478 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchHh
Confidence            5679999999999999887764 346899999999999 999998876653  57889999865

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.01  E-value=1.3e-05  Score=71.09  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      +.+.+.+++.+..       .++..|||+|+|+|.++-+++..+ .+|++||+|+..+ +.+++...   ...+++++++
T Consensus        16 ~~~~~~Iv~~~~~-------~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~-~~L~~~~~---~~~~~~vi~~   83 (262)
T PF00398_consen   16 PNIADKIVDALDL-------SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLA-KHLKERFA---SNPNVEVING   83 (262)
T ss_dssp             HHHHHHHHHHHTC-------GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHH-HHHHHHCT---TCSSEEEEES
T ss_pred             HHHHHHHHHhcCC-------CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHH-HHHHHHhh---hcccceeeec
Confidence            4566667676653       367899999999999999998887 7999999999998 88887554   3357999999


Q ss_pred             cHHHH
Q 027179          214 RVETF  218 (227)
Q Consensus       214 Da~~~  218 (227)
                      |+.++
T Consensus        84 D~l~~   88 (262)
T PF00398_consen   84 DFLKW   88 (262)
T ss_dssp             -TTTS
T ss_pred             chhcc
Confidence            98763

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.99  E-value=2.2e-05  Score=74.74  Aligned_cols=57  Identities=16%  Similarity=0.114  Sum_probs=45.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      ++.+|||+|||+|.++..++..+ .+|++||+++.++ +.+++   .++...+++++++|+.
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l-~~a~~---~~~~~~~i~~~~~d~~   93 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVI-KKNES---INGHYKNVKFMCADVT   93 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHH-HHHHH---HhccCCceEEEEeccc
Confidence            46799999999999999988765 5899999999998 65443   3443346888888874

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.98  E-value=1.7e-05  Score=71.19  Aligned_cols=82  Identities=17%  Similarity=0.097  Sum_probs=60.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHHH
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------GCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--------Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      +.-.|+..++..+.+++..       ..+.+|+|.+||||.|-+++...        ...+++|+|+++.++ .+++-|+
T Consensus        26 G~~~TP~~i~~l~~~~~~~-------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl   97 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNP-------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNL   97 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT--------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHH
T ss_pred             ceeehHHHHHHHHHhhhhc-------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhh
Confidence            5567888888888888753       35678999999999999988752        446899999999999 9999999


Q ss_pred             HHhCCCCc-EEEEEccHHH
Q 027179          200 EWTGFLDV-SSIHTVRVET  217 (227)
Q Consensus       200 ~~ngl~~~-v~~i~gDa~~  217 (227)
                      ..++.... ..+.++|.+.
T Consensus        98 ~l~~~~~~~~~i~~~d~l~  116 (311)
T PF02384_consen   98 LLHGIDNSNINIIQGDSLE  116 (311)
T ss_dssp             HHTTHHCBGCEEEES-TTT
T ss_pred             hhhcccccccccccccccc
Confidence            88876532 4688888753

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=97.98  E-value=4.7e-06  Score=79.64  Aligned_cols=66  Identities=20%  Similarity=0.355  Sum_probs=60.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEccHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLER  221 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~-v~~i~gDa~~~L~~  221 (227)
                      ..+..|.|+|||.|-+++.++..++ +|++-|.+++++ ++++.|+..|.++.. ++++..|+.++|++
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesi-k~Lk~ni~lNkv~~~~iei~Nmda~~Flr~  314 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESI-KWLKANIKLNKVDPSAIEIFNMDAKDFLRQ  314 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHH-HHHHHhccccccchhheeeecccHHHHhhc
Confidence            3678999999999999999999885 899999999999 999999999999865 99999999999963

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.98  E-value=3.7e-05  Score=68.30  Aligned_cols=56  Identities=7%  Similarity=0.043  Sum_probs=43.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G----a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+.+|||+|||+|.++..++...    ..+|+++|+|+.++ +.++++.      .++.++.+|+.+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~------~~~~~~~~d~~~  144 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY------PQVTFCVASSHR  144 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC------CCCeEEEeeccc
Confidence            45689999999999998877532    23799999999999 8887652      246777777654

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.97  E-value=2.7e-05  Score=70.50  Aligned_cols=63  Identities=16%  Similarity=0.192  Sum_probs=53.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHHHhCCCCc--EEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDV--SSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga------~~V~aVEis~~Al~~~ar~N~~~ngl~~~--v~~i~gDa~~  217 (227)
                      ..+.++||++||||-++.-++.. +.      .+|+.+|+|++++ +.+++-+++.++.+.  +.++++|+++
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~~~w~~~dAE~  170 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSRVEWVEGDAED  170 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCceEEEeCCccc
Confidence            46789999999999999988752 33      6899999999999 999999988777644  8999999975

>PTZ00146 fibrillarin; Provisional

Probab=97.95  E-value=2.9e-05  Score=71.12  Aligned_cols=79  Identities=13%  Similarity=-0.052  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      |-...+..+++.-+....    ..++.+|||||||+|.++..++.. + ...|++||+++++. +.+.+-++..   .++
T Consensus       112 p~rSKlaa~i~~g~~~l~----IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r---~NI  183 (293)
T PTZ00146        112 PFRSKLAAAIIGGVANIP----IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR---PNI  183 (293)
T ss_pred             CcccHHHHHHHCCcceec----cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---CCC
Confidence            777788877765554321    146789999999999999999875 3 35899999998865 4444433221   357


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      .++.+|+.+
T Consensus       184 ~~I~~Da~~  192 (293)
T PTZ00146        184 VPIIEDARY  192 (293)
T ss_pred             EEEECCccC
Confidence            788888754

>PLN02823 spermine synthase

Probab=97.94  E-value=0.00017  Score=67.00  Aligned_cols=67  Identities=19%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~  222 (227)
                      ..++||-+|+|.|.++.++++. +..+|++||+|+..+ +++++++..++  + +.+++++.+|+.++++..
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~  173 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKR  173 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhC
Confidence            4578999999999999998874 567999999999999 99999986543  2 358999999999999653

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.91  E-value=3.9e-05  Score=66.67  Aligned_cols=63  Identities=16%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             EEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          159 WLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       159 VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      |+|+||--|.+++.++.+|. .+|+++|+++..+ +.|++|++.+++.+++++..+|-++.+...
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~   64 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRIEVRLGDGLEVLKPG   64 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTEEEEE-SGGGG--GG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccEEEEECCcccccCCC
Confidence            68999999999999998874 6899999999999 999999999999999999999988877643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.89  E-value=5.2e-05  Score=71.50  Aligned_cols=90  Identities=23%  Similarity=0.346  Sum_probs=64.9

Q ss_pred             CCCCCCCCHHHHHHHHH------HHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHH
Q 027179          125 KGMDVRPMMEVVKGAAF------DILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       125 ~g~~~RPtte~v~ealf------~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar  196 (227)
                      ...+++|.++.-+...+      +....+.     .++-++||..||||.=||-.+..  +..+|++-|+|++|+ +.++
T Consensus        18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~-----~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~   91 (377)
T PF02005_consen   18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKR-----KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIK   91 (377)
T ss_dssp             SSSS--GGGHHHHHHHHHH---HHHHHHCH------S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHH
T ss_pred             CCcccCcchhcccceeehhHHHHHHhhhhh-----cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHH
Confidence            44589999976554422      2222210     13458999999999999999875  668999999999999 9999


Q ss_pred             HHHHHhCCCC-cEEEEEccHHHHHH
Q 027179          197 PNLEWTGFLD-VSSIHTVRVETFLE  220 (227)
Q Consensus       197 ~N~~~ngl~~-~v~~i~gDa~~~L~  220 (227)
                      +|++.|++.+ ++++.+.|+-..|.
T Consensus        92 ~N~~~N~~~~~~~~v~~~DAn~ll~  116 (377)
T PF02005_consen   92 RNLELNGLEDERIEVSNMDANVLLY  116 (377)
T ss_dssp             HHHHHCT-SGCCEEEEES-HHHHHC
T ss_pred             HhHhhccccCceEEEehhhHHHHhh
Confidence            9999999987 79999999988773

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.88  E-value=6.9e-06  Score=73.60  Aligned_cols=69  Identities=28%  Similarity=0.216  Sum_probs=58.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC-CCcEEEEEccHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl-~~~v~~i~gDa~~~L~~~~  223 (227)
                      .++.+|||.|.|-|..+|+++.+||.+|+.||.||..+ +++.-|==.-++ +-+++++.||+.++++.+.
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~  202 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLNPWSRELFEIAIKIILGDAYEVVKDFD  202 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccCCCCccccccccEEecccHHHHHhcCC
Confidence            46899999999999999999999999999999999998 888877422222 2358999999999988754

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.87  E-value=5.2e-05  Score=63.28  Aligned_cols=59  Identities=14%  Similarity=0.070  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      +-+.+..+.+.++.+..        .+++.|||.|||||+.+++|...| .+.+++|+++..+ +.|++
T Consensus       173 ~~~kP~~l~~~lI~~~t--------~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~-~~a~~  231 (231)
T PF01555_consen  173 PTQKPVELIERLIKAST--------NPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYC-EIAKK  231 (231)
T ss_dssp             TT-S-HHHHHHHHHHHS---------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHH-HHHHH
T ss_pred             eecCCHHHHHHHHHhhh--------ccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHH-HHhcC
Confidence            44455667777776654        368899999999999999988776 4799999999998 88864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK01581 speE spermidine synthase; Validated

Probab=97.81  E-value=8.2e-05  Score=70.22  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=54.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHH-----HhCC-CCcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLE-----WTGF-LDVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~-----~ngl-~~~v~~i~gDa~~~L~~~  222 (227)
                      ...++||++|||+|....++++. +..+|++||+|++++ ++|+++-.     ...+ +.+++++.+|+.+++...
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~  223 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP  223 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhc
Confidence            35679999999999988888875 457999999999999 99996321     1122 358999999999998764

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.79  E-value=7.3e-05  Score=65.01  Aligned_cols=79  Identities=20%  Similarity=0.147  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHH-------h
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEW-------T  202 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~-------n  202 (227)
                      .........++..+..       .+++.++|||||.|.+-+.++. .++.++++||+.+... +.++.+.+.       .
T Consensus        25 Ei~~~~~~~il~~~~l-------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~-~~a~~~~~~~~~~~~~~   96 (205)
T PF08123_consen   25 EISPEFVSKILDELNL-------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH-DLAEELLEELKKRMKHY   96 (205)
T ss_dssp             GCHHHHHHHHHHHTT---------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH-HHHHHHHHHHHHHHHHC
T ss_pred             ecCHHHHHHHHHHhCC-------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH-HHHHHHHHHHHHHHHHh
Confidence            3344445556665543       3678999999999999887765 4888899999999987 777765543       2


Q ss_pred             CC-CCcEEEEEccHHH
Q 027179          203 GF-LDVSSIHTVRVET  217 (227)
Q Consensus       203 gl-~~~v~~i~gDa~~  217 (227)
                      |. ..+++++++|..+
T Consensus        97 g~~~~~v~l~~gdfl~  112 (205)
T PF08123_consen   97 GKRPGKVELIHGDFLD  112 (205)
T ss_dssp             TB---EEEEECS-TTT
T ss_pred             hcccccceeeccCccc
Confidence            33 2468899999764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.78  E-value=6.9e-05  Score=59.39  Aligned_cols=39  Identities=33%  Similarity=0.371  Sum_probs=35.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV  194 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~  194 (227)
                      .++.+|||+|||+|.++..++..|. +|+++|+++.++ +.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~-~~   59 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMI-EK   59 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHH-HH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHH-hh
Confidence            4678999999999999999988887 899999999998 66

...

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.76  E-value=9.2e-05  Score=67.59  Aligned_cols=75  Identities=19%  Similarity=0.156  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      ..+...+.+....       .+.+.||++|-|||.++..++..|+ +|+|+|+|+..+ ....+-.+-.-.+++.+++.|
T Consensus        44 p~v~~~I~~ka~~-------k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmv-ael~krv~gtp~~~kLqV~~g  114 (315)
T KOG0820|consen   44 PLVIDQIVEKADL-------KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMV-AELEKRVQGTPKSGKLQVLHG  114 (315)
T ss_pred             HHHHHHHHhccCC-------CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHH-HHHHHHhcCCCccceeeEEec
Confidence            3455555554443       4678999999999999999887765 799999999998 666665554444578999999


Q ss_pred             cHHH
Q 027179          214 RVET  217 (227)
Q Consensus       214 Da~~  217 (227)
                      |+++
T Consensus       115 D~lK  118 (315)
T KOG0820|consen  115 DFLK  118 (315)
T ss_pred             cccc
Confidence            9864

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.76  E-value=8.1e-05  Score=72.18  Aligned_cols=87  Identities=10%  Similarity=0.003  Sum_probs=61.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHH
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG---------CSEVHFVEMDPWVVSNVLIPN  198 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G---------a~~V~aVEis~~Al~~~ar~N  198 (227)
                      +.-+|+..+++.+.+++....+........+|||.|||||.|.++++.+.         ...++++|+++.++ ..++.|
T Consensus         4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~   82 (524)
T TIGR02987         4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKL   82 (524)
T ss_pred             cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHH
Confidence            45577888888888877432110000134689999999999999887532         14789999999999 999999


Q ss_pred             HHHhCCCCcEEEEEccHH
Q 027179          199 LEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       199 ~~~ngl~~~v~~i~gDa~  216 (227)
                      +..++. ..+.+++.|..
T Consensus        83 l~~~~~-~~~~i~~~d~l   99 (524)
T TIGR02987        83 LGEFAL-LEINVINFNSL   99 (524)
T ss_pred             HhhcCC-CCceeeecccc
Confidence            988762 12456655543

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PHA01634 hypothetical protein

Probab=97.75  E-value=7.2e-05  Score=61.68  Aligned_cols=54  Identities=15%  Similarity=0.017  Sum_probs=49.5

Q ss_pred             CCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       153 ~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      +..+++|+|+|++.|.-+|.++.+||++|+++|.++... +..++|++.|.+-|+
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI~DK   79 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNICDK   79 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhheeeec
Confidence            368899999999999999999999999999999999998 999999999977543

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.74  E-value=0.00011  Score=59.38  Aligned_cols=63  Identities=16%  Similarity=0.025  Sum_probs=51.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHHHHHhC--CCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-----RGCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-----~Ga~~V~aVEis~~Al~~~ar~N~~~ng--l~~~v~~i~gDa~~  217 (227)
                      .+...|+|+|||-|.+|..++.     ....+|++||.++..+ +.+.+..+..+  +..+.+++.++..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhh
Confidence            3567999999999999999887     4446899999999998 89999888887  54456777766543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.68  E-value=6.1e-05  Score=65.01  Aligned_cols=35  Identities=20%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDP  188 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~  188 (227)
                      .++.+|||||||||.++..++.+ +. .+|++||+++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            35679999999999999988875 32 5899999987

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.67  E-value=0.00037  Score=62.02  Aligned_cols=69  Identities=16%  Similarity=0.051  Sum_probs=60.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~  223 (227)
                      ...+++||+|..||.-++..|..  --++|+++|+|+.+. ++..+=.+..|+.++++++++++.+.|+++.
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~  142 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELL  142 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHH
Confidence            35689999999999988887753  235899999999999 9999999999999999999999999998764

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.64  E-value=7.5e-05  Score=65.04  Aligned_cols=61  Identities=18%  Similarity=0.195  Sum_probs=45.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .-.++||+|||.|.++..++.+ +.+++++|+++.|+ +.+++....  .. +|+++++|+.++..
T Consensus        43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~--~~-~V~~~~~dvp~~~P  103 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG--LP-HVEWIQADVPEFWP  103 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT---S-SEEEEES-TTT---
T ss_pred             ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC--CC-CeEEEECcCCCCCC
Confidence            3468999999999999998877 57899999999999 999987653  33 69999999987643

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.63  E-value=0.00026  Score=68.58  Aligned_cols=63  Identities=21%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||.|.=+..++..  +.+.|+++|+++.-+ +.+++|+++.|+. ++.+.+.|+.++
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~-nv~v~~~D~~~~  176 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVS-NVALTHFDGRVF  176 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-eEEEEeCchhhh
Confidence            46789999999999999998864  346899999999998 9999999999996 589999998764

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.63  E-value=0.00017  Score=64.40  Aligned_cols=74  Identities=11%  Similarity=0.050  Sum_probs=46.2

Q ss_pred             cCCCCCCCC-C-CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCH----HHHHHHHcC------CCEEEEEeCCHH
Q 027179          122 LSPKGMDVR-P-MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS----VGIEAISRG------CSEVHFVEMDPW  189 (227)
Q Consensus       122 ~v~~g~~~R-P-tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~----isI~aas~G------a~~V~aVEis~~  189 (227)
                      .++...+.| | .-+.+.+.++..+.....   ...+.+|||+|||||-    +++.++..+      ..+|+|+|+|+.
T Consensus        67 ti~~T~FfR~~~~~~~l~~~vlp~l~~~~~---~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~  143 (264)
T smart00138       67 TTNETRFFRESKHFEALEEKVLPLLIASRR---HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK  143 (264)
T ss_pred             hcCCCcccCCcHHHHHHHHHHhHHHHHhcC---CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH
Confidence            334444555 2 234455555554422110   1234699999999995    566555431      248999999999


Q ss_pred             HHHHHHHHHH
Q 027179          190 VVSNVLIPNL  199 (227)
Q Consensus       190 Al~~~ar~N~  199 (227)
                      ++ +.|++++
T Consensus       144 ~L-~~Ar~~~  152 (264)
T smart00138      144 AL-EKARAGI  152 (264)
T ss_pred             HH-HHHHcCC
Confidence            99 9999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00018  Score=67.73  Aligned_cols=91  Identities=23%  Similarity=0.301  Sum_probs=69.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      .++.|.++.-+......++....    ....+|+|-+||||.=||-.+.. +..+|++=|+||.|+ +++++|++.|...
T Consensus        28 VFYNP~m~~NRDlsV~~l~~~~~----~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~~  102 (380)
T COG1867          28 VFYNPAMEFNRDLSVLVLKAFGK----LLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSGE  102 (380)
T ss_pred             ceeCchhhhccchhHHHHHHhhc----cCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCcc
Confidence            47888887655544333333210    12679999999999999998875 555899999999999 9999999999554


Q ss_pred             CcEEEEEccHHHHHHHHh
Q 027179          206 DVSSIHTVRVETFLERAE  223 (227)
Q Consensus       206 ~~v~~i~gDa~~~L~~~~  223 (227)
                       +..+++.|+..+|.+..
T Consensus       103 -~~~v~n~DAN~lm~~~~  119 (380)
T COG1867         103 -DAEVINKDANALLHELH  119 (380)
T ss_pred             -cceeecchHHHHHHhcC
Confidence             46788899998887644

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.61  E-value=4.3e-06  Score=62.45  Aligned_cols=45  Identities=20%  Similarity=0.152  Sum_probs=36.0

Q ss_pred             EEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          160 LDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       160 LDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      ||+|||+|.+...++.. ...+++++|+|+.++ +.+++.+...+..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~~   46 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGND   46 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCCc
Confidence            79999999999998875 446899999999999 8999988887753

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.59  E-value=0.00019  Score=63.47  Aligned_cols=61  Identities=15%  Similarity=0.022  Sum_probs=48.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH------------HhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE------------WTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~------------~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+||+.|||.|.=.+.+|..|. +|++||+|+.|+ +.+.+...            ... ..+++++++|+++.
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai-~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l  115 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAV-LSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNL  115 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHH-HHHHHHcCCCcceecccccceec-cCceEEEEccCcCC
Confidence            457999999999999999999997 599999999999 77644110            001 23689999999975

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.57  E-value=0.0001  Score=65.49  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=53.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      +..||-.|.+..     +..       ....+|+|||||+|.-+--++.+ +...++++|.|++++ +.|++.     +.
T Consensus        14 eRtRPa~dLla~-----Vp~-------~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-a~Aa~r-----lp   75 (257)
T COG4106          14 ERTRPARDLLAR-----VPL-------ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-AKAAQR-----LP   75 (257)
T ss_pred             hccCcHHHHHhh-----CCc-------cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-HHHHHh-----CC
Confidence            356777774332     221       24568999999999988877776 556899999999999 776532     22


Q ss_pred             CcEEEEEccHHHHH
Q 027179          206 DVSSIHTVRVETFL  219 (227)
Q Consensus       206 ~~v~~i~gDa~~~L  219 (227)
                       +.+|.++|+.++-
T Consensus        76 -~~~f~~aDl~~w~   88 (257)
T COG4106          76 -DATFEEADLRTWK   88 (257)
T ss_pred             -CCceecccHhhcC
Confidence             4788888887653

>PRK11524 putative methyltransferase; Provisional

Probab=97.54  E-value=0.00035  Score=62.82  Aligned_cols=58  Identities=16%  Similarity=0.123  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW  201 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~  201 (227)
                      ..+.+.++....        .+++.|||.|+|||+.+++|...| .+.+++|++++.+ +.+++-++.
T Consensus       195 ~~L~erlI~~~S--------~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~-~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASS--------NPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYI-KMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhC--------CCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHH-HHHHHHHHh
Confidence            455555554443        478899999999999999887776 4799999999998 999988753

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.52  E-value=0.00043  Score=61.19  Aligned_cols=64  Identities=13%  Similarity=0.019  Sum_probs=57.3

Q ss_pred             CeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ..+||+|||.|.+-+++|.. .....+|||+....+ ..+.+-+...++. |+.++++|+.+.++.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~  114 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLK-NLRLLCGDAVEVLDYL  114 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCC-cEEEEcCCHHHHHHhc
Confidence            58999999999999999986 446799999999998 8999999999986 6999999999998764

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.48  E-value=0.00032  Score=64.77  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=35.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV  191 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al  191 (227)
                      ..+++|||+|||.|..+..++.+|++.|+++|-+..-.
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~  151 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY  151 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH
Confidence            68999999999999999999999999999999988765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.46  E-value=0.00017  Score=63.07  Aligned_cols=63  Identities=17%  Similarity=0.020  Sum_probs=47.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHHhCC----------CCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL-IPNLEWTGF----------LDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a-r~N~~~ngl----------~~~v~~i~gDa~~~  218 (227)
                      ..+.+||+.|||.|.-.+.++.+|. +|++||+++.|+ +.+ ++|.....+          .++|+++++|.|+.
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai-~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l  109 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAI-EQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL  109 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHH-HHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred             CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHH-HHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence            3567999999999999999999986 899999999999 776 333321110          23689999999873

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.46  E-value=0.00019  Score=69.33  Aligned_cols=57  Identities=23%  Similarity=0.232  Sum_probs=52.5

Q ss_pred             CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179          157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD  214 (227)
                      -.|||+|+|||-+++-|+..|+..|+|+|.-..+. +.+++-.++||..++|++|+..
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vInkr  124 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVINKR  124 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeeccc
Confidence            46999999999999998888999999999999999 9999999999999999988643

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.00022  Score=60.36  Aligned_cols=80  Identities=20%  Similarity=0.269  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      |-+-.-++.+++.+..       .+..+.+|||+|.|.+-++++..|....++||.|++.+ ...+-.+-+.|+....+|
T Consensus        55 pAtteQv~nVLSll~~-------n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~a~R~g~~k~trf  126 (199)
T KOG4058|consen   55 PATTEQVENVLSLLRG-------NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLHAWRAGCAKSTRF  126 (199)
T ss_pred             CccHHHHHHHHHHccC-------CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHHHHHHhcccchhh
Confidence            4344445566666653       24468999999999999999888877899999999998 888888888887666677


Q ss_pred             EEccHHHH
Q 027179          211 HTVRVETF  218 (227)
Q Consensus       211 i~gDa~~~  218 (227)
                      .+-|++++
T Consensus       127 ~RkdlwK~  134 (199)
T KOG4058|consen  127 RRKDLWKV  134 (199)
T ss_pred             hhhhhhhc
Confidence            77766553

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.42  E-value=0.00029  Score=62.17  Aligned_cols=52  Identities=23%  Similarity=0.364  Sum_probs=44.1

Q ss_pred             eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      +++|||||.|.+++.+-..|...|+++|+++.|+ +.-+.|..        .++.+|+.+.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~--------~~~~~Di~~~   53 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP--------EVICGDITEI   53 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT--------EEEESHGGGC
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc--------cccccccccc
Confidence            6999999999999998888888899999999999 99998874        5677777653

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.40  E-value=0.00022  Score=64.31  Aligned_cols=48  Identities=17%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      .++..+||+||-+|.+++.+++. |+..|.+||||+..+ +.|++|++..
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~  105 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFP  105 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhcccc
Confidence            46789999999999999999984 889999999999999 9999998754

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.37  E-value=0.0005  Score=63.23  Aligned_cols=95  Identities=15%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             ccCCeee-cCCCCCCCCCCHH---HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHH-HHHHHHcCCCEEEEEeCCHH
Q 027179          115 KARRKKL-LSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAISRGCSEVHFVEMDPW  189 (227)
Q Consensus       115 ~~~Gr~L-~v~~g~~~RPtte---~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~i-sI~aas~Ga~~V~aVEis~~  189 (227)
                      ...|..+ .+|++ ..-|+.+   .-...+.+.|.....  .....-++||+|+|.-+| .|-.++...-+++|.|+|+.
T Consensus        61 ~dfgl~~wdiP~~-~LcP~iP~R~nYi~~i~DlL~~~~~--~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~  137 (299)
T PF05971_consen   61 HDFGLDVWDIPEG-RLCPPIPNRLNYIHWIADLLASSNP--GIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPK  137 (299)
T ss_dssp             HHH--------TT-S----HHHHHHHHHHHHHHHT--TC--GCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HH
T ss_pred             HhcCCccccCCCC-CcCCCCchhHHHHHHHHHHhhcccc--ccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHH
Confidence            3456665 77776 3334444   222223333322110  001245899999998876 56555432358999999999


Q ss_pred             HHHHHHHHHHHHh-CCCCcEEEEEc
Q 027179          190 VVSNVLIPNLEWT-GFLDVSSIHTV  213 (227)
Q Consensus       190 Al~~~ar~N~~~n-gl~~~v~~i~g  213 (227)
                      ++ +.|++|++.| +++++|+++..
T Consensus       138 sl-~~A~~nv~~N~~L~~~I~l~~~  161 (299)
T PF05971_consen  138 SL-ESARENVERNPNLESRIELRKQ  161 (299)
T ss_dssp             HH-HHHHHHHHHT-T-TTTEEEEE-
T ss_pred             HH-HHHHHHHHhccccccceEEEEc
Confidence            99 9999999999 99999998865

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK13699 putative methylase; Provisional

Probab=97.37  E-value=0.00084  Score=58.93  Aligned_cols=61  Identities=15%  Similarity=0.064  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      +..+.+.++....        .+++.|||.|||||+.++++...|- +.+++|++++.+ +.+.+.++...
T Consensus       149 P~~l~~~~i~~~s--------~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~-~~~~~r~~~~~  209 (227)
T PRK13699        149 PVTSLQPLIESFT--------HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYH-RAGQQRLAAVQ  209 (227)
T ss_pred             cHHHHHHHHHHhC--------CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHH-HHHHHHHHHHH
Confidence            3445555544333        3678999999999999998877764 799999999998 88888776543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.31  E-value=0.00034  Score=58.60  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPW  189 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~  189 (227)
                      .++.+|||+|||||.++..++.+  +..+|++||+++.
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~   68 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM   68 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence            46789999999999999988764  3458999999984

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.30  E-value=0.00043  Score=62.13  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=38.1

Q ss_pred             eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~  200 (227)
                      +|+|||||.|.+++.+...|...|+++|+++.|+ +..+.|..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCC
Confidence            6899999999999988888888899999999999 99998863

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00047  Score=60.98  Aligned_cols=87  Identities=20%  Similarity=0.098  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCC--EEEEEeCCHHHHHHHHHHHHHHhCC
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCS--EVHFVEMDPWVVSNVLIPNLEWTGF  204 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~--~V~aVEis~~Al~~~ar~N~~~ngl  204 (227)
                      ..+-....+-..+|++|....     .++..+||+|+|||.++-.++. -|+.  .+++||.-++.+ +..++|+++.--
T Consensus        60 n~~iSAp~mha~~le~L~~~L-----~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~  133 (237)
T KOG1661|consen   60 NLTISAPHMHATALEYLDDHL-----QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDIT  133 (237)
T ss_pred             ceEEcchHHHHHHHHHHHHhh-----ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhcc
Confidence            344445556667788887543     5789999999999999987773 2432  349999999999 999999987651


Q ss_pred             ---------CCcEEEEEccHHHHHH
Q 027179          205 ---------LDVSSIHTVRVETFLE  220 (227)
Q Consensus       205 ---------~~~v~~i~gDa~~~L~  220 (227)
                               ..++.++.+|...-..
T Consensus       134 ~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen  134 TSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             CchhhhhhccCceEEEeCCccccCC
Confidence                     1246777888765433

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.22  E-value=0.003  Score=57.11  Aligned_cols=66  Identities=15%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .++..|||+||+-|.=+..++..  +.+.|+++|+++.-+ ..+++|+++.|+. ++.+++.|+......
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~-~v~~~~~D~~~~~~~  151 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVF-NVIVINADARKLDPK  151 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-S-SEEEEESHHHHHHHH
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCc-eEEEEeecccccccc
Confidence            46789999999999999888763  357899999999999 9999999999996 588888999887554

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.10  E-value=0.00039  Score=62.45  Aligned_cols=40  Identities=23%  Similarity=0.174  Sum_probs=33.2

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      =.++||||||||-.|.++-.+ +.+.++||+|..++ +.+.+
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl-~kA~e  165 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML-AKAHE  165 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHH-HHHHh
Confidence            368999999999999986444 56899999999998 76654

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.07  E-value=0.0042  Score=57.25  Aligned_cols=63  Identities=19%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ..-+|||+.||.|.--+.++.. .  ..+|...|.++..+ +..++-++..|+.+.++|.++|+|+.
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCH
Confidence            4569999999999999888753 2  36899999999999 99999999999998779999999985

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.03  E-value=0.0052  Score=54.52  Aligned_cols=69  Identities=22%  Similarity=0.214  Sum_probs=55.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCC---CCcEEEEEccHHHHHHHHhh
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl---~~~v~~i~gDa~~~L~~~~~  224 (227)
                      +.++||=||-|.|...-++++.. ..+|++||+|+..+ +.+++-+.....   +.|++++.+|+..++++..+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~  148 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE  148 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhccC
Confidence            57899999999999999988753 57999999999999 999997765432   35899999999999987543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.02  E-value=0.0041  Score=54.72  Aligned_cols=86  Identities=24%  Similarity=0.136  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCC--CCeEEEeccCCCHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLR--PGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~--~~~VLDLgsGTG~isI~aa-s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      +|-..++....+++-+.....    .+  +.+|+|+|||.|-=||.+| .....+|+.||.+..-+ ...++=.+..+++
T Consensus        43 ~~~~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L~  117 (215)
T COG0357          43 IRDPEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGLE  117 (215)
T ss_pred             CCCHHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCCC
Confidence            444456666667666543211    22  5899999999999999877 34445699999999998 8999999999996


Q ss_pred             CcEEEEEccHHHHHH
Q 027179          206 DVSSIHTVRVETFLE  220 (227)
Q Consensus       206 ~~v~~i~gDa~~~L~  220 (227)
                       |++++++.++++-.
T Consensus       118 -nv~i~~~RaE~~~~  131 (215)
T COG0357         118 -NVEIVHGRAEEFGQ  131 (215)
T ss_pred             -CeEEehhhHhhccc
Confidence             59999999988654

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.96  E-value=0.0077  Score=55.57  Aligned_cols=80  Identities=15%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      +.+.+.+++.|..       .++..++|.=+|-|.=+.+++.. +..+|+++|.|+.|+ +.++++++.+  .+++++++
T Consensus         6 pVll~Evl~~L~~-------~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L~~~--~~R~~~i~   75 (305)
T TIGR00006         6 SVLLDEVVEGLNI-------KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERLSDF--EGRVVLIH   75 (305)
T ss_pred             chhHHHHHHhcCc-------CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHhhc--CCcEEEEe
Confidence            4556667677654       36679999999999999999875 347899999999999 9999988755  35899999


Q ss_pred             ccHHHHHHHHh
Q 027179          213 VRVETFLERAE  223 (227)
Q Consensus       213 gDa~~~L~~~~  223 (227)
                      ++..++.+.++
T Consensus        76 ~nF~~l~~~l~   86 (305)
T TIGR00006        76 DNFANFFEHLD   86 (305)
T ss_pred             CCHHHHHHHHH
Confidence            99887766553

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.91  E-value=0.0042  Score=53.46  Aligned_cols=77  Identities=18%  Similarity=0.178  Sum_probs=58.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      .-|+.+.+.+.+.+.+..       ..+.-||++|.|||.|+-+++++|.  ..++++|.|++=+ ..+.+      ..+
T Consensus        29 I~PsSs~lA~~M~s~I~p-------esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~------~~p   94 (194)
T COG3963          29 ILPSSSILARKMASVIDP-------ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQ------LYP   94 (194)
T ss_pred             ecCCcHHHHHHHHhccCc-------ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHH------hCC
Confidence            558888888777665543       2566899999999999999999874  5799999999877 44332      223


Q ss_pred             cEEEEEccHHHHH
Q 027179          207 VSSIHTVRVETFL  219 (227)
Q Consensus       207 ~v~~i~gDa~~~L  219 (227)
                      .+.+++||+++.=
T Consensus        95 ~~~ii~gda~~l~  107 (194)
T COG3963          95 GVNIINGDAFDLR  107 (194)
T ss_pred             CccccccchhhHH
Confidence            4679999998743

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.85  E-value=0.0021  Score=57.48  Aligned_cols=41  Identities=22%  Similarity=0.333  Sum_probs=35.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      ...-+||+|||||..|-.+...| -..++||+|+.++ +.+.+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML-~~a~~   90 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSML-EQAVE   90 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHH-HHHHH
Confidence            46789999999999988776667 5799999999999 88886

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.84  E-value=0.0051  Score=57.12  Aligned_cols=62  Identities=10%  Similarity=-0.054  Sum_probs=43.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC---------CCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG---------FLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng---------l~~~v~~i~gDa~~  217 (227)
                      ++.+|||||||=|.=-.-+...+..+++++|++..++ +.|++-.+...         ..=...++.+|.+.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si-~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~  132 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESI-EEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS  132 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhccccccccccccchhheecccccc
Confidence            6789999999988865556667888999999999999 88887662211         11135788888763

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.79  E-value=0.0057  Score=57.16  Aligned_cols=62  Identities=19%  Similarity=0.134  Sum_probs=52.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G---a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|++-|.=+..++...   ...|+++|+++.-+ +.+++|+++.|+.+ +.+++.|...
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~  219 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARR  219 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEeccccc
Confidence            578999999999999988887642   24579999999999 99999999999975 8888888654

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.74  E-value=0.0094  Score=51.04  Aligned_cols=80  Identities=24%  Similarity=0.108  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      +.+...+++-+....-  ....+.+++|+|||-|-=||.++- +...+|+.||.+..-+ ...+.=+...++. |+++++
T Consensus        29 ~~~~~Hi~DSL~~~~~--~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~-nv~v~~  104 (184)
T PF02527_consen   29 EIWERHILDSLALLPF--LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLS-NVEVIN  104 (184)
T ss_dssp             HHHHHHHHHHHGGGGC--S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-S-SEEEEE
T ss_pred             HHHHHHHHHHHHhhhh--hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCC-CEEEEE
Confidence            4444566665543210  011223799999999999998764 4567899999999998 8999999999997 599999


Q ss_pred             ccHHH
Q 027179          213 VRVET  217 (227)
Q Consensus       213 gDa~~  217 (227)
                      +++.+
T Consensus       105 ~R~E~  109 (184)
T PF02527_consen  105 GRAEE  109 (184)
T ss_dssp             S-HHH
T ss_pred             eeecc
Confidence            99988

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.68  E-value=0.0033  Score=54.45  Aligned_cols=55  Identities=13%  Similarity=0.043  Sum_probs=42.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ...+|+|+|.|+|.++++++.. ...+++.+|. |+.+ +.+++       .++++++.+|.++.
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~-~~~~~-------~~rv~~~~gd~f~~  155 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVI-EQAKE-------ADRVEFVPGDFFDP  155 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHH-CCHHH-------TTTEEEEES-TTTC
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhh-hcccc-------ccccccccccHHhh
Confidence            3468999999999999999875 4468999998 8787 77776       56899999998753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.65  E-value=0.0013  Score=58.37  Aligned_cols=65  Identities=15%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHH--HHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE--AISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~--aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      .+..++|+..-....   ...+-+++|-|||+|.+---  ++.+ .-..|++-|+|++++ ++|++|+....
T Consensus        34 RLAsEi~qR~l~~l~---~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~lA~kNL~LLt  101 (246)
T PF11599_consen   34 RLASEIFQRALHYLE---GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-ELARKNLSLLT  101 (246)
T ss_dssp             HHHHHHHHHHHCTSS---S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHhhc---CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HHHHHhhhhcc
Confidence            355556665422210   12456899999999998433  3333 236899999999999 99999987553

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.64  E-value=0.0031  Score=55.92  Aligned_cols=66  Identities=17%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .+.+++|+||=-+.+++.+...+ +..++++|+++..+ +.+.+|+..+++.+++++.++|.+..|+.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~i~vr~~dgl~~l~~   82 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSERIDVRLGDGLAVLEL   82 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcceEEEeccCCccccCc
Confidence            34569999999999999998864 67999999999999 99999999999999999999998776654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.60  E-value=0.0095  Score=58.14  Aligned_cols=64  Identities=13%  Similarity=-0.027  Sum_probs=53.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .+..+||+|||.|.+.++.|.. ....+++||+....+ ..+.+.++..++. |+.+++.|+..+..
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~-~~~~~~~~~~~l~-N~~~~~~~~~~~~~  411 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV-ANVLKLAGEQNIT-NFLLFPNNLDLILN  411 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHcCCC-eEEEEcCCHHHHHH
Confidence            4678999999999999999875 346799999999988 7777788888886 58999999765443

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.59  E-value=0.0032  Score=57.86  Aligned_cols=57  Identities=21%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ..+++|||||.|.+.+.+...|..-+.++|+++.|+ +.-+.|...      ..++..|+.++.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~~------~~~~~~di~~~~   59 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFPH------GDIILGDIKELD   59 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCCC------CceeechHhhcC
Confidence            358999999999999988888888899999999999 888877643      346666766544

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.38  E-value=0.047  Score=49.82  Aligned_cols=68  Identities=24%  Similarity=0.217  Sum_probs=57.8

Q ss_pred             CCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHHhh
Q 027179          156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~~~  224 (227)
                      .++||=+|-|.|.+.-++++.. ..+++.||+|+..+ +++++-+....  . +.|++++.+|..+++++.+.
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~  148 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE  148 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence            3699999999999999998864 68999999999999 99998765443  2 36899999999999997654

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.33  E-value=0.0063  Score=57.25  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=31.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV  190 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~A  190 (227)
                      .++.++|||||++|.++-.++.+|+ +|++||..+-+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~  245 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA  245 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC
Confidence            4688999999999999999999998 89999966543

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.32  E-value=0.0061  Score=55.81  Aligned_cols=52  Identities=17%  Similarity=0.316  Sum_probs=41.9

Q ss_pred             EEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          159 WLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       159 VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      |+|||||.|.+++.+-..|..-|.++|+++.|+ +..+.|...       .++++|+.+.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-~ty~~N~~~-------~~~~~Di~~~   52 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-KTYEANFGN-------KVPFGDITKI   52 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHhCCC-------CCCccChhhh
Confidence            689999999999988778887788999999998 898888531       3455666654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.29  E-value=0.0058  Score=54.80  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179          153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV  191 (227)
Q Consensus       153 ~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al  191 (227)
                      +.++++|||+|+-||.|+--++.+||++|+|||..-.-+
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql  115 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL  115 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc
Confidence            368899999999999999999999999999999876443

>PRK10458 DNA cytosine methylase; Provisional

Probab=96.28  E-value=0.0088  Score=58.12  Aligned_cols=43  Identities=23%  Similarity=0.289  Sum_probs=38.2

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      .-+++|||||.|.+++.+-..|..-|.++|+++.|+ +.-+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHHc
Confidence            458999999999999988777877899999999998 8888885

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=96.09  E-value=0.0089  Score=53.88  Aligned_cols=40  Identities=15%  Similarity=0.125  Sum_probs=33.5

Q ss_pred             CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN  198 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N  198 (227)
                      +..+|+|||+|.-++.++.. .++|+|+|+|+.++ +.+++.
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k~   74 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKKH   74 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhcC
Confidence            38999999999777766654 46899999999999 888873

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.05  E-value=0.025  Score=50.95  Aligned_cols=60  Identities=22%  Similarity=0.180  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      ....+|+-+.....   +....+|||+|||.|+-..++..  ....++++||.|+.+. +.++.=+
T Consensus        17 ~~~~vl~El~~r~p---~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~   78 (274)
T PF09243_consen   17 AVYRVLSELRKRLP---DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLL   78 (274)
T ss_pred             HHHHHHHHHHHhCc---CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHH
Confidence            34445555554321   35678999999999987665543  2457899999999998 8777643

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.74  E-value=0.0088  Score=49.56  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPW  189 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~  189 (227)
                      .+.+||||||+.|.++-.++.++  ..+|++||+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            45799999999999999998887  679999999876

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.63  E-value=0.032  Score=51.71  Aligned_cols=80  Identities=14%  Similarity=0.082  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      +.+.++++++|..       .++..++|.=-|.|.-+.+++.. +..+|+++|.|+.|+ +.++++++.+  .+++.+++
T Consensus         6 PVll~Evl~~L~~-------~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~l~~~--~~r~~~~~   75 (310)
T PF01795_consen    6 PVLLKEVLEALNP-------KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKERLKKF--DDRFIFIH   75 (310)
T ss_dssp             -TTHHHHHHHHT---------TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCCTCCC--CTTEEEEE
T ss_pred             cccHHHHHHhhCc-------CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHHHhhc--cceEEEEe
Confidence            3455667777764       46779999999999999999874 447999999999999 8998887655  46899999


Q ss_pred             ccHHHHHHHHh
Q 027179          213 VRVETFLERAE  223 (227)
Q Consensus       213 gDa~~~L~~~~  223 (227)
                      ++..++-+.+.
T Consensus        76 ~~F~~l~~~l~   86 (310)
T PF01795_consen   76 GNFSNLDEYLK   86 (310)
T ss_dssp             S-GGGHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            98665554444

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.29  E-value=0.039  Score=51.91  Aligned_cols=62  Identities=15%  Similarity=0.036  Sum_probs=49.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC-CCC----cEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-FLD----VSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng-l~~----~v~~i~gDa~~  217 (227)
                      +++.++|||||-|.=-+-.-+.|..+.+++||.+..+ +.|++-.+... ...    .+.|+.+|.+.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI-~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~  183 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI-NQARKRYRDMKNRFKKFIFTAVFIAADCFK  183 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccH-HHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence            5678999999999988887778889999999999998 88887554221 111    37899999875

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.27  E-value=0.018  Score=43.54  Aligned_cols=62  Identities=16%  Similarity=0.072  Sum_probs=22.8

Q ss_pred             EEeccCCCHHHHHHHH---c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179          160 LDLYSGTGSVGIEAIS---R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       160 LDLgsGTG~isI~aas---~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~  223 (227)
                      |++|++.|..++.+++   . +..++++||..+. . +..+++++..++.++++++++|..+.+..+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~   66 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP   66 (106)
T ss_dssp             --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcC
Confidence            5789888988877654   2 2237999999996 3 4556666667777789999999999887664

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=95.23  E-value=0.14  Score=47.41  Aligned_cols=66  Identities=9%  Similarity=-0.050  Sum_probs=46.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHH----cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCC-cEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS----RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas----~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~-~v~~i~gDa~~~L~~  221 (227)
                      ++..++|||||+|.=.-.++.    .+ ....++||+|.+++ +.+.+++......+ .+.-+++|-.+.+..
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L-~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~  147 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSEL-QRTLAELPLGNFSHVRCAGLLGTYDDGLAW  147 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHhhhhccCCCeEEEEEEecHHHHHhh
Confidence            456899999999986433221    21 24689999999999 89999887333331 345589998877653

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=95.11  E-value=0.08  Score=47.18  Aligned_cols=79  Identities=14%  Similarity=-0.031  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE-E
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS-I  210 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aa-s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~-~  210 (227)
                      ++.-+..+|+-+....+   ......||++|||||.-=-..- +.++ +||++|.++.+- +.+.+.+..+.-. +++ +
T Consensus        57 ~~~ykrelFs~i~~~~g---k~~K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~me-e~~~ks~~E~k~~-~~~~f  130 (252)
T KOG4300|consen   57 ADSYKRELFSGIYYFLG---KSGKGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKME-EIADKSAAEKKPL-QVERF  130 (252)
T ss_pred             HHHHHHHHHhhhHHHhc---ccCccceEEecccCCCCcccccCCCCc-eEEEeCCcHHHH-HHHHHHHhhccCc-ceEEE
Confidence            34456667776543221   1223358999999998544332 2444 799999999998 9999988888433 455 8


Q ss_pred             EEccHHH
Q 027179          211 HTVRVET  217 (227)
Q Consensus       211 i~gDa~~  217 (227)
                      +.++..+
T Consensus       131 vva~ge~  137 (252)
T KOG4300|consen  131 VVADGEN  137 (252)
T ss_pred             Eeechhc
Confidence            8887665

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=94.89  E-value=0.15  Score=36.21  Aligned_cols=56  Identities=20%  Similarity=0.201  Sum_probs=35.4

Q ss_pred             EEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          159 WLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       159 VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++|+|||+|... .++....  ..++++|.++.++ ...+.+....+. ..+.++.+|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML-ALARARAEGAGL-GLVDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH-HHHHhhhhhcCC-CceEEEEecccc
Confidence            999999999976 2232221  3799999999998 664444332211 115666666543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=94.85  E-value=0.12  Score=49.60  Aligned_cols=68  Identities=16%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHH-----hCCC-CcEEEEEccHHHHHHHHh
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEW-----TGFL-DVSSIHTVRVETFLERAE  223 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~-----ngl~-~~v~~i~gDa~~~L~~~~  223 (227)
                      .-.+||=||-|.|--.-++.+. +..+++-||.||+++ +.+++|...     +.++ .|++++..|+++|+++..
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~  363 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA  363 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc
Confidence            3468999999999988888876 478999999999999 999976432     2233 489999999999998753

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.56  E-value=0.015  Score=56.83  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=58.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ++-+|||-.|+||.-+|-.+..  |..+|++-|.++.++ +..++|++.|++++.++..++|+...+-
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~  175 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMY  175 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHH
Confidence            5568999999999999998873  778999999999999 9999999999999999999999976553

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=94.53  E-value=0.11  Score=50.64  Aligned_cols=80  Identities=14%  Similarity=0.012  Sum_probs=60.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G----CSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G----a~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      +--.|+..+.+.+...+..       .+..+|+|-+||||.+=+.+... +    ....++.|+++... .+++.|.-.+
T Consensus       166 GEfyTP~~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lh  237 (489)
T COG0286         166 GEFYTPREVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILH  237 (489)
T ss_pred             CccCChHHHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHh
Confidence            4556777777777666654       24459999999999998877642 1    24689999999999 9999999999


Q ss_pred             CCCCcEEEEEccH
Q 027179          203 GFLDVSSIHTVRV  215 (227)
Q Consensus       203 gl~~~v~~i~gDa  215 (227)
                      |++..+.+..+|.
T Consensus       238 gi~~~~~i~~~dt  250 (489)
T COG0286         238 GIEGDANIRHGDT  250 (489)
T ss_pred             CCCcccccccccc
Confidence            9864355666654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=94.39  E-value=0.088  Score=47.50  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      ...+|+|+|||.=-+++.+.... ...++|.|||...+ +...+-+...++.  .++...|+.
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~--~~~~v~Dl~  164 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVP--HDARVRDLL  164 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-C--EEEEEE-TT
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCC--cceeEeeee
Confidence            46799999999999999876542 24899999999999 9999998888875  455555553

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.31  E-value=0.21  Score=43.92  Aligned_cols=47  Identities=28%  Similarity=0.394  Sum_probs=39.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      .+++.|||.|+|+|..++++...| .+.+++|++++-+ +.+.+-+...
T Consensus       221 ~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~-~~~~~r~~~~  267 (302)
T COG0863         221 FPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYV-EVALKRLQEG  267 (302)
T ss_pred             CCCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHH-HHHHHHHHhh
Confidence            578999999999999999877666 4799999999998 8877766544

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.30  E-value=0.42  Score=44.43  Aligned_cols=80  Identities=13%  Similarity=0.154  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i  211 (227)
                      ..+..++++.|..       .++...+|.=-|-|.-+-+++...  .++++++|.|+.|+ +.+++.+..++  ++++++
T Consensus         9 pVLl~E~i~~L~~-------~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l~~~~--~r~~~v   78 (314)
T COG0275           9 PVLLNEVVELLAP-------KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERLKEFD--GRVTLV   78 (314)
T ss_pred             chHHHHHHHhccc-------CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHhhccC--CcEEEE
Confidence            4566667777765       467899999999999999988763  36799999999999 99999888776  589999


Q ss_pred             EccHHHHHHHHh
Q 027179          212 TVRVETFLERAE  223 (227)
Q Consensus       212 ~gDa~~~L~~~~  223 (227)
                      +++..+....+.
T Consensus        79 ~~~F~~l~~~l~   90 (314)
T COG0275          79 HGNFANLAEALK   90 (314)
T ss_pred             eCcHHHHHHHHH
Confidence            998666555544

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=93.96  E-value=0.089  Score=50.83  Aligned_cols=103  Identities=15%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             ecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhc---CC--CCCCCCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEe
Q 027179          113 GGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA---GG--CPASLRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVE  185 (227)
Q Consensus       113 ~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~---~~--~~~~~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVE  185 (227)
                      .|+|.+--+.+-+...+-|.++.+.+-.+ +|+..   ..  .....++.||||+||--|.=+.++|.  .+-+.|+|-|
T Consensus       195 l~~ws~vgl~v~~s~vpigat~e~lag~~-~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD  273 (460)
T KOG1122|consen  195 LGKWSKVGLVVFDSVVPIGATPEYLAGHY-MLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFAND  273 (460)
T ss_pred             ccccccceEEEecCccccCCchhhcccce-eeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecc
Confidence            35666666666666677777776554321 23321   11  12345789999999999987766554  4556799999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          186 MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       186 is~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+..-+ .....|+.+.|+.+ ..+++.|..++
T Consensus       274 ~n~~r~-~~l~~n~~rlGv~n-tiv~n~D~~ef  304 (460)
T KOG1122|consen  274 SNENRL-KSLKANLHRLGVTN-TIVSNYDGREF  304 (460)
T ss_pred             cchHHH-HHHHHHHHHhCCCc-eEEEccCcccc
Confidence            999999 99999999999974 66778887643

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=93.07  E-value=0.062  Score=50.92  Aligned_cols=60  Identities=22%  Similarity=0.159  Sum_probs=48.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHHHHHhCCCCc-EEEEEccH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN-------VLIPNLEWTGFLDV-SSIHTVRV  215 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~-------~ar~N~~~ngl~~~-v~~i~gDa  215 (227)
                      .+|+.|+|-|.|||++=+.+|.-|+ .|++-|||-..+ .       .++.|.++.|...+ +.++.+|.
T Consensus       207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~v-ragrg~~~si~aNFkQYg~~~~fldvl~~D~  274 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTV-RAGRGEDESIKANFKQYGSSSQFLDVLTADF  274 (421)
T ss_pred             CCCCEEecCccccCceeeehhhhcc-eeeccccchhee-ecccCCCcchhHhHHHhCCcchhhheeeecc
Confidence            5789999999999999999988886 899999998776 4       46788888885432 44666664

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=92.29  E-value=0.1  Score=47.19  Aligned_cols=45  Identities=11%  Similarity=0.214  Sum_probs=38.6

Q ss_pred             eEEEeccCCCHHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          158 RWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~G---a~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      ++|++|||.|.....+++..   .-.|++.|.++.|+ +..++|...+.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e  121 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDE  121 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccch
Confidence            79999999999999988642   25899999999999 99999887654

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=92.28  E-value=0.2  Score=43.35  Aligned_cols=40  Identities=18%  Similarity=0.329  Sum_probs=28.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar  196 (227)
                      +..+++|+|||+|++++.+... ...|+.=|+++..+ ...+
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~-~~~~   59 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLI-NFWK   59 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHH-HHHH
T ss_pred             CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHH-HHHH
Confidence            5679999999999999986554 45899999999876 5444

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=92.23  E-value=0.29  Score=44.50  Aligned_cols=43  Identities=23%  Similarity=0.166  Sum_probs=34.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN  198 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N  198 (227)
                      ...++||||+|.|.++..++.. ..+|++-|.|+.+...+.+++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg  136 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKG  136 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCC
Confidence            5678999999999999998764 457999999998873333433

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=92.10  E-value=0.41  Score=37.80  Aligned_cols=51  Identities=22%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             EeccCCC--HHHHHHH--Hc-CCCEEEEEeCCHHHHHHHHHHH--HHHhCCCCcEEEEE
Q 027179          161 DLYSGTG--SVGIEAI--SR-GCSEVHFVEMDPWVVSNVLIPN--LEWTGFLDVSSIHT  212 (227)
Q Consensus       161 DLgsGTG--~isI~aa--s~-Ga~~V~aVEis~~Al~~~ar~N--~~~ngl~~~v~~i~  212 (227)
                      |+||+.|  ...+..+  .. ...+|+++|.+|..+ +.+++|  +..+...+.++++.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~~~~~~~~~   58 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDKDGEVEFHP   58 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTTSTTGGEEE
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCCCceEEEEE
Confidence            8999999  6555543  22 346899999999998 999999  77775543355544

; PDB: 2PY6_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=91.95  E-value=1.3  Score=39.88  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=41.8

Q ss_pred             CCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          153 SLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       153 ~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      +..++++|=+|=.- .+||+++. ...++|+.||+|++.+ +..++.++..|+.  ++.++.|+.+.|..
T Consensus        42 dL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~--i~~~~~DlR~~LP~  107 (243)
T PF01861_consen   42 DLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP--IEAVHYDLRDPLPE  107 (243)
T ss_dssp             -STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE---TTS---T
T ss_pred             cccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc--eEEEEecccccCCH
Confidence            37889999887443 55777665 4567999999999999 9999999999994  99999999887764

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=91.95  E-value=0.26  Score=43.65  Aligned_cols=65  Identities=22%  Similarity=0.135  Sum_probs=42.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ...+.||.|||.|.++-.++..-+.+|..||.++.-+ +.|++.+...+ ....++++.-+.+|-..
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~  119 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDN-PRVGEFYCVGLQDFTPE  119 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGG-CCEEEEEES-GGG----
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccC-CCcceEEecCHhhccCC
Confidence            4579999999999999988777788999999999998 88887654411 12245666666665443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=91.86  E-value=0.13  Score=47.19  Aligned_cols=38  Identities=32%  Similarity=0.462  Sum_probs=34.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV  191 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al  191 (227)
                      ..+++|||||||+|.-+|.+...|+..|++-|.|.+.+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            57889999999999999999888878899999998765

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=91.76  E-value=0.19  Score=51.81  Aligned_cols=45  Identities=36%  Similarity=0.499  Sum_probs=39.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~  200 (227)
                      .++..++|-|+|-|+|.++++..|+ .|++||.+|.|. -..++-++
T Consensus        89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAy-lfLKavlE  133 (875)
T COG1743          89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAY-LFLKAVLE  133 (875)
T ss_pred             ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHH-HHHHHHHh
Confidence            4667899999999999999999996 799999999998 67776554

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=91.61  E-value=0.53  Score=41.26  Aligned_cols=79  Identities=16%  Similarity=0.081  Sum_probs=52.0

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      -.+.=++-+++.|+....    ..+.+||+++||||.=+..++.. ..-.=.--|.++... .-++..+...++.|-...
T Consensus         6 AaeRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P   80 (204)
T PF06080_consen    6 AAERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPP   80 (204)
T ss_pred             hhhhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCC
Confidence            344444555555554321    12336999999999999999874 334566778999887 788888888877643334


Q ss_pred             EEccH
Q 027179          211 HTVRV  215 (227)
Q Consensus       211 i~gDa  215 (227)
                      +.-|+
T Consensus        81 ~~lDv   85 (204)
T PF06080_consen   81 LALDV   85 (204)
T ss_pred             eEeec
Confidence            44444

The function of this family is unknown.

>PRK00536 speE spermidine synthase; Provisional

Probab=91.31  E-value=1.8  Score=39.25  Aligned_cols=86  Identities=10%  Similarity=0.052  Sum_probs=56.8

Q ss_pred             ccceEEEEecccCCeeecCCCCCCCCCCHH-HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEE
Q 027179          105 THRLLQVLGGKARRKKLLSPKGMDVRPMME-VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHF  183 (227)
Q Consensus       105 ~~~~L~ii~G~~~Gr~L~v~~g~~~RPtte-~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~a  183 (227)
                      ....+.|..-...|+-|.+. +.+. -+.+ .+-.+++-......    ....++||=+|.|-|...-|+++.. .+|+.
T Consensus        27 ~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHppl~~----h~~pk~VLIiGGGDGg~~REvLkh~-~~v~m   99 (262)
T PRK00536         27 EHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHMGGCT----KKELKEVLIVDGFDLELAHQLFKYD-THVDF   99 (262)
T ss_pred             CCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHHHHhh----CCCCCeEEEEcCCchHHHHHHHCcC-CeeEE
Confidence            34455666666667777776 5443 2222 22222222211111    1356899999999999999998765 48999


Q ss_pred             EeCCHHHHHHHHHHH
Q 027179          184 VEMDPWVVSNVLIPN  198 (227)
Q Consensus       184 VEis~~Al~~~ar~N  198 (227)
                      ||+|++.+ +.+++-
T Consensus       100 VeID~~Vv-~~~k~~  113 (262)
T PRK00536        100 VQADEKIL-DSFISF  113 (262)
T ss_pred             EECCHHHH-HHHHHH
Confidence            99999999 999993

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=90.77  E-value=0.53  Score=38.97  Aligned_cols=35  Identities=14%  Similarity=0.065  Sum_probs=29.4

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       180 ~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      +|+++|+.++|+ +.+++.++.+++.+++++++..=
T Consensus         1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sH   35 (140)
T PF06962_consen    1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSH   35 (140)
T ss_dssp             EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-G
T ss_pred             CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCH
Confidence            699999999999 99999999999988999998653

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=90.68  E-value=0.38  Score=42.83  Aligned_cols=65  Identities=12%  Similarity=0.077  Sum_probs=51.2

Q ss_pred             CeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC------CCCcEEEEEccHHHHHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG------FLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng------l~~~v~~i~gDa~~~L~~~  222 (227)
                      -.+.|+|||=|.+-++++-. ...-+.+.||-.... +..++-++..+      ...++.+++.+++.++.++
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVs-dYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~  133 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVS-DYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF  133 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHH-HHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence            46999999999999998754 446799999988886 88888777665      1235889999998888664

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=90.66  E-value=0.36  Score=43.15  Aligned_cols=62  Identities=19%  Similarity=0.195  Sum_probs=41.4

Q ss_pred             CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHH---HHHHHhCC-----CCcEEEEEccHHHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI---PNLEWTGF-----LDVSSIHTVRVETFLE  220 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar---~N~~~ngl-----~~~v~~i~gDa~~~L~  220 (227)
                      .+|||.=+|-|.=++-++..|+ +|+++|.||... .+.+   +++....-     ..+++++++|..++|.
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia-~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~  146 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIA-ALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR  146 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHH-HHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHH-HHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence            4899999999999998888887 699999999764 4444   34433221     1379999999998876

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.15  E-value=0.34  Score=42.51  Aligned_cols=50  Identities=14%  Similarity=0.050  Sum_probs=38.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      .++.+|+||||--|+++-.++.. +. ..|++||+.|-..            .. ++.++++|.+
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------------~~-~V~~iq~d~~   95 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------------IP-GVIFLQGDIT   95 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------------CC-CceEEeeecc
Confidence            35789999999999999988875 32 3599999999664            22 3677777764

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=90.09  E-value=0.77  Score=45.84  Aligned_cols=62  Identities=15%  Similarity=0.169  Sum_probs=47.9

Q ss_pred             CCeEEEeccCCCHHHHHHHH---c--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAIS---R--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas---~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ..+++=+|+|-|-+.-..++   .  ..-++++||.||.|+  ...+|.+....+++|++|.+|+.++-
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAi--vtL~~~n~~~W~~~Vtii~~DMR~w~  434 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAI--VTLQNRNFECWDNRVTIISSDMRKWN  434 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchh--hhhhhhchhhhcCeeEEEeccccccC
Confidence            34788999999999765442   1  134799999999998  56667666667789999999998764

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=89.72  E-value=0.49  Score=42.67  Aligned_cols=47  Identities=36%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl  204 (227)
                      ...||.||+|||-.|+.++.....+|+.-|. +..+ +..+.|...|+.
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~-~~L~~~~~~~~~  133 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVV-ENLKFNRDKNNI  133 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhH-HHHHHhhhhhhh
Confidence            4569999999999999988854456777775 4444 566666555543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=89.32  E-value=2.7  Score=37.63  Aligned_cols=78  Identities=18%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      |-...+..+++.-+....    -.++.+||-||+.+|+.--+.+-- | .+.|+|||.+++.. ..+- ++....  .|+
T Consensus        53 P~RSKLaAai~~Gl~~~~----ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~-~la~~R--~NI  124 (229)
T PF01269_consen   53 PFRSKLAAAILKGLENIP----IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLL-NLAKKR--PNI  124 (229)
T ss_dssp             TTT-HHHHHHHTT-S--S------TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHH-HHHHHS--TTE
T ss_pred             chhhHHHHHHHcCccccC----CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHH-HHhccC--Cce
Confidence            777888888766554221    146789999999999988777642 3 45799999999886 4433 232222  256


Q ss_pred             EEEEccHH
Q 027179          209 SIHTVRVE  216 (227)
Q Consensus       209 ~~i~gDa~  216 (227)
                      -.|-+|+.
T Consensus       125 iPIl~DAr  132 (229)
T PF01269_consen  125 IPILEDAR  132 (229)
T ss_dssp             EEEES-TT
T ss_pred             eeeeccCC
Confidence            66777765

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=89.10  E-value=0.84  Score=41.72  Aligned_cols=68  Identities=21%  Similarity=0.162  Sum_probs=39.3

Q ss_pred             CCeEEEeccCCCHHH-HHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHH-HhCCCCcEEEEEccHHHHHHHHhh
Q 027179          156 PGRWLDLYSGTGSVG-IEAISR-G-CSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       156 ~~~VLDLgsGTG~is-I~aas~-G-a~~V~aVEis~~Al~~~ar~N~~-~ngl~~~v~~i~gDa~~~L~~~~~  224 (227)
                      +.+|+=+|||.=-++ |.+++. + ...|+++|+|++|+ +.+++=++ ..++.++++|+++|+.+.-..+..
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~  192 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDVTYDLKE  192 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG-GG---
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhcccccccc
Confidence            458998888754443 444433 3 24799999999999 99998776 667778899999998765444433

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=88.97  E-value=1.5  Score=39.02  Aligned_cols=93  Identities=14%  Similarity=0.080  Sum_probs=58.9

Q ss_pred             cCCeeecCCCCCCC---CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHH
Q 027179          116 ARRKKLLSPKGMDV---RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVV  191 (227)
Q Consensus       116 ~~Gr~L~v~~g~~~---RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al  191 (227)
                      .+|-++---.+..+   .|-...+..++++=|....    -.++.+||=||+-+|+..-+.+.- |.+.|++||.+++..
T Consensus        38 VYGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~p----i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~  113 (231)
T COG1889          38 VYGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFP----IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM  113 (231)
T ss_pred             ccCceeEEecCcceeeeCcchhHHHHHHHcCcccCC----cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH
Confidence            34444433333333   3778888888877665431    146889999999999988777653 556799999999876


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          192 SNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       192 ~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                       .-+..=++.   .+|+-.+-+|+.
T Consensus       114 -reLl~~a~~---R~Ni~PIL~DA~  134 (231)
T COG1889         114 -RELLDVAEK---RPNIIPILEDAR  134 (231)
T ss_pred             -HHHHHHHHh---CCCceeeecccC
Confidence             332222221   124555666654

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=88.60  E-value=4.5  Score=35.96  Aligned_cols=68  Identities=15%  Similarity=0.143  Sum_probs=49.5

Q ss_pred             CCCeEEEeccCCC----HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc-HHHHHHHHh
Q 027179          155 RPGRWLDLYSGTG----SVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAE  223 (227)
Q Consensus       155 ~~~~VLDLgsGTG----~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD-a~~~L~~~~  223 (227)
                      .-+.+++.+|+-|    ++++++|.+ -.+++++|-.+++.. ...++.+...++.+.++|+.+| ..+.+..++
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~-~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~  114 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL-SEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK  114 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH-HHHHHHHhhccccccceEEecCCHHHHHhhcc
Confidence            4467899876644    456665553 345799999999887 7888888878887778999998 456776654

The function of this family is unknown.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=88.41  E-value=1.9  Score=37.21  Aligned_cols=42  Identities=14%  Similarity=0.172  Sum_probs=28.0

Q ss_pred             CCCeEEEeccCCCH----HHHHHHH--c-CC---CEEEEEeCCHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGS----VGIEAIS--R-GC---SEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       155 ~~~~VLDLgsGTG~----isI~aas--~-Ga---~~V~aVEis~~Al~~~ar~  197 (227)
                      ..-+||..||+||-    +++.+..  . ..   -+++|.|+|+.++ +.|++
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L-~~Ar~   82 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL-EKARA   82 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH-HHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH-HHHHh
Confidence            44689999999993    4443333  1 12   3899999999999 88875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=86.56  E-value=1.9  Score=37.93  Aligned_cols=59  Identities=15%  Similarity=-0.006  Sum_probs=33.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHH----c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS----R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas----~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      +++.++++|.-.|.=.+..|+    . +..+|++||++.... .  ++-++.+.+..+|++++||..
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~-~--~~a~e~hp~~~rI~~i~Gds~   95 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH-N--RKAIESHPMSPRITFIQGDSI   95 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh-c--hHHHhhccccCceEEEECCCC
Confidence            567999999999888876664    2 457899999976544 2  222333445578999999974

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=85.47  E-value=1.5  Score=41.56  Aligned_cols=54  Identities=17%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             EEEeccCCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          159 WLDLYSGTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       159 VLDLgsGTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      =+|+|.|  +..|+.+-   ...-.-.+.|++.-.+ ..+..|+..|++.+.+.+++...
T Consensus       106 GiDIgtg--asci~~llg~rq~n~~f~~teidd~s~-~~a~snV~qn~lss~ikvV~~~~  162 (419)
T KOG2912|consen  106 GIDIGTG--ASCIYPLLGARQNNWYFLATEIDDMSF-NYAKSNVEQNNLSSLIKVVKVEP  162 (419)
T ss_pred             eeeccCc--hhhhHHhhhchhccceeeeeecccccc-chhhccccccccccceeeEEecc
Confidence            4687655  45555542   2224688999999999 99999999999998888887643

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=84.96  E-value=4.7  Score=38.44  Aligned_cols=65  Identities=15%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---------GCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~---------Ga~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      +.+...+.+.++..+.    ...-.++++|+|+|.+.--+++.         .+.+++.||.|++-. +.-+++++...
T Consensus        60 ella~~~~~~wq~~g~----p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~-~~Qk~~L~~~~  133 (370)
T COG1565          60 ELLAEQFLQLWQELGR----PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR-ARQKETLKATE  133 (370)
T ss_pred             HHHHHHHHHHHHHhcC----CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH-HHHHHHHhccc
Confidence            4566666666665431    23457999999999998776641         256899999999987 77676666543

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=84.74  E-value=2.6  Score=39.28  Aligned_cols=66  Identities=11%  Similarity=0.052  Sum_probs=54.9

Q ss_pred             CCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          153 SLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       153 ~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      +..++.|+=+| ----.||+++.. -+++|..||+|+..+ +...+-++..|+. +++.+.-|+.+.+..
T Consensus       150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~-~ie~~~~Dlr~plpe  216 (354)
T COG1568         150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYN-NIEAFVFDLRNPLPE  216 (354)
T ss_pred             CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCcc-chhheeehhcccChH
Confidence            57888899888 666778887654 468999999999999 9999999999985 589888898776643

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=83.69  E-value=2.3  Score=38.79  Aligned_cols=42  Identities=10%  Similarity=0.046  Sum_probs=36.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      ....++|+||+-|.+.-.+..+|..+.+.+|.|-.++ +.++.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~  113 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRD  113 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhc
Confidence            3468999999999999998888999999999999998 66653

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=83.48  E-value=4.1  Score=39.46  Aligned_cols=41  Identities=15%  Similarity=0.006  Sum_probs=31.4

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      -+.|+|+|+|-|.++-.++-...-.|.+||-|.... +.+++
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~-~ra~r  194 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLV-ERAQR  194 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHH-HHHHH
Confidence            368999999999999876543335799999998766 54443

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=83.09  E-value=4.1  Score=39.62  Aligned_cols=50  Identities=16%  Similarity=0.088  Sum_probs=40.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHH---cC--CCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS---RG--CSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas---~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      +.+.+.|++||||.+-++...   .|  ....++-|.++... ..++.|...+++.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~  271 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNID  271 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCC
Confidence            457899999999999887543   12  24699999999998 8999998877764

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=82.38  E-value=5.9  Score=36.00  Aligned_cols=59  Identities=17%  Similarity=0.117  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCC----HHHHHHHHcC------CCEEEEEeCCHHHHHHHHHH
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG----SVGIEAISRG------CSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG----~isI~aas~G------a~~V~aVEis~~Al~~~ar~  197 (227)
                      +.+...++..+.....    ...-+||-.+|+||    ++++.+...+      .-+|+|.|+|..++ +.|++
T Consensus        79 ~~l~~~v~p~l~~~~~----~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L-~~A~~  147 (268)
T COG1352          79 EELRDEVLPELVKRKK----GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL-EKARA  147 (268)
T ss_pred             HHHHHHHHHHHHhhcc----CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH-HHHhc
Confidence            5566666665543210    13568999999999    4555444322      25899999999999 88774

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=82.02  E-value=3.2  Score=41.04  Aligned_cols=59  Identities=15%  Similarity=0.077  Sum_probs=34.5

Q ss_pred             CCeeecCCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC
Q 027179          117 RRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC  178 (227)
Q Consensus       117 ~Gr~L~v~~g~~~-RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga  178 (227)
                      .|-.|.+|.|-.. .-..+.-.+.+-+++....   ....-..+||+|||+|+||-.++.++.
T Consensus        81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~---~~g~iR~~LDvGcG~aSF~a~l~~r~V  140 (506)
T PF03141_consen   81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK---WGGGIRTALDVGCGVASFGAYLLERNV  140 (506)
T ss_pred             cCCEEEeCCCCccccCCHHHHHHHHHHHhhccc---cCCceEEEEeccceeehhHHHHhhCCc
Confidence            3556667665321 1133444444444443310   001225799999999999999998875

; GO: 0008168 methyltransferase activity

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=82.00  E-value=1.7  Score=41.83  Aligned_cols=62  Identities=18%  Similarity=0.026  Sum_probs=46.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHh-------CC-CCcEEEEEccHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT-------GF-LDVSSIHTVRVE  216 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~n-------gl-~~~v~~i~gDa~  216 (227)
                      .+++.+.|||+|.|.+....+. .+++.-.++|+..... +.+..|.+.+       |. .+.++.++++..
T Consensus       191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS-~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~  261 (419)
T KOG3924|consen  191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPS-QCAELNKEEFKKLMKHFGKKPNKIETIHGSFL  261 (419)
T ss_pred             CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcH-HHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence            4678999999999999887665 4778889999988776 7777776544       33 345778888764

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=81.75  E-value=3  Score=39.40  Aligned_cols=47  Identities=17%  Similarity=0.123  Sum_probs=37.9

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      ..+.+||=+|||. |.+++.+|+ .||.+|+.+|.++..+ ++|++    +|.+
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~----~Ga~  216 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKK----FGAT  216 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHH----hCCe
Confidence            4678999999985 555666666 4999999999999999 89886    6654

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=81.67  E-value=3.6  Score=38.17  Aligned_cols=61  Identities=15%  Similarity=0.168  Sum_probs=48.9

Q ss_pred             CCCCCCeEEEeccCCCH---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          152 ASLRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       152 ~~~~~~~VLDLgsGTG~---isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+..++.||==|+|+|.   +++++|++|+ ++...|++++.. +...++++.+|   ++....+|+.+
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~-~etv~~~~~~g---~~~~y~cdis~   97 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGN-EETVKEIRKIG---EAKAYTCDISD   97 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccch-HHHHHHHHhcC---ceeEEEecCCC
Confidence            34678899999999984   7888888998 799999999998 77777777776   46777777643

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=81.56  E-value=3.1  Score=38.08  Aligned_cols=42  Identities=17%  Similarity=0.151  Sum_probs=31.2

Q ss_pred             CCeEEEeccCCCH----HHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHH
Q 027179          156 PGRWLDLYSGTGS----VGIEAISR-G----CSEVHFVEMDPWVVSNVLIPN  198 (227)
Q Consensus       156 ~~~VLDLgsGTG~----isI~aas~-G----a~~V~aVEis~~Al~~~ar~N  198 (227)
                      .-+||..||.||-    +++.+... +    .-+|+|.|+|+.++ +.|++-
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL-~~Ar~G  166 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL-EKARSG  166 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH-HHHHhC
Confidence            3699999999993    44433321 1    24799999999999 988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
1ws6_A	171	The Structure Of Thermus Thermphillus Hb8 Hypotheti		9e-06
3p9n_A	189	Rv2966c Of M. Tuberculosis Is A Rsmd-Like Methyltra		4e-05
2fpo_A	202	Putative Methyltransferase Yhhf From Escherichia Co		7e-05
2ift_A	201	Crystal Structure Of Putative Methylase Hi0767 From		2e-04
2esr_A	177	Conserved Hypothetical Protein- Streptococcus Pyoge		5e-04
2fhp_A	187	Crystal Structure Of Putative Methylase From Entero		6e-04

>pdb|1WS6|A Chain A, The Structure Of Thermus Thermphillus Hb8 Hypothetical Protein Ttha0928 Length = 171

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
           ++++LGGKAR   L  P     RP    ++ A FD L+     P   R GR+LD ++G+G
Sbjct: 1   VVRILGGKARGVALKVPA--SARPSPVRLRKALFDYLRLR--YP---RRGRFLDPFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
           +VG+EA S G   V  VE DP  V  +L  N+  TG    + +  + VE FL  A+
Sbjct: 54  AVGLEAASEGWEAV-LVEKDPEAV-RLLKENVRRTGL--GARVVALPVEVFLPEAK 105

>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like Methyltransferase Length = 189

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 108 LLQVLGGKAR-RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
           + +++GG A  R+  + P+G   RP  + V+ + F+I+ +       L     LDLY+G+
Sbjct: 2   MTRIIGGVAGGRRIAVPPRG--TRPTTDRVRESLFNIVTAR----RDLTGLAVLDLYAGS 55
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
           G++G+EA+SRG + V FVE D
Sbjct: 56  GALGLEALSRGAASVLFVESD 76

>pdb|2FPO|A Chain A, Putative Methyltransferase Yhhf From Escherichia Coli. Length = 202

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+ L         +   + LD ++G+G+
Sbjct: 14  IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
           +G+EA+SR  +    +E D   VS  LI NL
Sbjct: 68  LGLEALSRYAAGATLIEXDR-AVSQQLIKNL 97

>pdb|2IFT|A Chain A, Crystal Structure Of Putative Methylase Hi0767 From Haemophilus Influenzae. Nesg Target Ir102. Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++ G  R +KL       +RP  + VK   F+ L         +     LD ++G+GS
Sbjct: 13  VRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLX------PYIHQSECLDGFAGSGS 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
           +G EA+SR   +V F+E+D   V+N L  NL+
Sbjct: 67  LGFEALSRQAKKVTFLELDK-TVANQLKKNLQ 97

>pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes Length = 177

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE 185
           G   RP  + V+GA F+ +            GR LDL++G+G + IEA+SRG S    VE
Sbjct: 8   GKITRPTSDKVRGAIFNXIGP------YFNGGRVLDLFAGSGGLAIEAVSRGXSAAVLVE 61
Query: 186 MD 187
            +
Sbjct: 62  KN 63

>pdb|2FHP|A Chain A, Crystal Structure Of Putative Methylase From Enterococcus Faecalis Length = 187

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
           +V+ G+   ++L +  G + RP  + VK + F+ +            G  LDLYSG+G +
Sbjct: 5   RVISGEYGGRRLKALDGDNTRPTTDKVKESIFNXI------GPYFDGGXALDLYSGSGGL 58
Query: 170 GIEAISRG-----CSEVHFVEM 186
            IEA+SRG     C E +F  +
Sbjct: 59  AIEAVSRGXDKSICIEKNFAAL 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	7e-29
2esr_A	177	Methyltransferase; structural genomics, hypothetic	4e-25
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	4e-24
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	2e-23
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	3e-23
1ws6_A	171	Methyltransferase; structural genomics, riken stru	2e-22
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187

 Score =  106 bits (266), Expect = 7e-29
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           V+ G+   ++L +  G + RP  + VK + F+++            G  LDLYSG+G + 
Sbjct: 6   VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGP------YFDGGMALDLYSGSGGLA 59

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
           IEA+SRG  +   +E +   +  V+  N+  T   +   +  +     LE+  +
Sbjct: 60  IEAVSRGMDKSICIEKNFAAL-KVIKENIAITKEPEKFEVRKMDANRALEQFYE 112

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177

 Score = 96.1 bits (240), Expect = 4e-25
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS 179
            L +  G   RP  + V+GA F+++            GR LDL++G+G + IEA+SRG S
Sbjct: 2   SLKTLDGKITRPTSDKVRGAIFNMIGP------YFNGGRVLDLFAGSGGLAIEAVSRGMS 55

Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF 225
               VE +      ++  N+  T   +  ++  +  E  ++    +F
Sbjct: 56  AAVLVEKNR-KAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRF 101

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Length = 202

 Score = 94.2 bits (235), Expect = 4e-24
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 8/114 (7%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           ++GG+ R +KL  P    +RP  + V+   F+ L         +   + LD ++G+G++G
Sbjct: 16  IIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALG 69

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
           +EA+SR  +    +EMD  V    LI NL        + +      +FL +   
Sbjct: 70  LEALSRYAAGATLIEMDRAVSQ-QLIKNLATLK-AGNARVVNSNAMSFLAQKGT 121

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 8/114 (7%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           ++ G  R +KL       +RP  + VK   F+ L         +     LD ++G+GS+G
Sbjct: 15  IIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMP------YIHQSECLDGFAGSGSLG 68

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAE 223
            EA+SR   +V F+E+D  V +  L  NL+      + + +       FL++ +
Sbjct: 69  FEALSRQAKKVTFLELDKTVAN-QLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ 121

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Length = 189

 Score = 91.4 bits (228), Expect = 3e-23
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           ++GG A  +++  P     RP  + V+ + F+I+ +       L     LDLY+G+G++G
Sbjct: 5   IIGGVAGGRRIAVP-PRGTRPTTDRVRESLFNIVTARR----DLTGLAVLDLYAGSGALG 59

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--AEQF 225
           +EA+SRG + V FVE D    + V+  N+E  G L  +++    V   +        
Sbjct: 60  LEALSRGAASVLFVESDQRSAA-VIARNIEALG-LSGATLRRGAVAAVVAAGTTSPV 114

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 Length = 171

 Score = 88.7 bits (221), Expect = 2e-22
 Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
           +LGGKAR   L  P     RP    ++ A FD L+         R GR+LD ++G+G+VG
Sbjct: 4   ILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVG 56

Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
           +EA S G   V  VE DP  V  +L  N+  TG      +  + VE FL  A+ 
Sbjct: 57  LEAASEGWEAV-LVEKDPEAVR-LLKENVRRTGLGA--RVVALPVEVFLPEAKA 106

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           L +   K +  K         R          +            +      DL +GTG 
Sbjct: 8   LAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLG-----DIEGKVVADLGAGTGV 62

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
           +   A+  G  EV  VE+D   V +VLI NL 
Sbjct: 63  LSYGALLLGAKEVICVEVDKEAV-DVLIENLG 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 75/232 (32%)

Query: 25  LPLFSTSFTKPISQKR---YPLIVFS-------YKSGTGLTS--------EDK-KELLKR 65
           L +F  +F      K     P  + S         S   ++           K +E++++
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 66  Y---GLDPD-EFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKL 121
           +    L  + +FL  P      + E R   ++      Q +R  +   QV          
Sbjct: 82  FVEEVLRINYKFLMSPI-----KTEQRQPSMMTRMYIEQRDRL-YNDNQVF--------- 126

Query: 122 LSPKGMDV-RP-MMEVVKGAAFDILQSAGGCPASLRPGRWLDLY--SGTG-SV-GIEAIS 175
              K  +V R      ++ A    L         LRP + + +    G+G +   ++   
Sbjct: 127 --AK-YNVSRLQPYLKLRQA----LLE-------LRPAKNVLIDGVLGSGKTWVALDV-- 170

Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
             C          + +         W   L++ + ++   ET LE  ++   
Sbjct: 171 --CLSYKVQCKMDFKIF--------W---LNLKNCNS--PETVLEMLQKLLY 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.81
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.78
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.77
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.76
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.72
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.63
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.62
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.46
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.39
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.38
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.36
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.32
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.32
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.3
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.3
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.29
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.29
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.29
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.29
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.29
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.28
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.28
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.27
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.26
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.25
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.25
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.25
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.25
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.24
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.22
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.22
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.21
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.2
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.2
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.19
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.18
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.16
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.15
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.14
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.12
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.11
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.11
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.1
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.1
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.1
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.09
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.08
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.08
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.08
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.08
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.07
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.06
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.06
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.05
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.05
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.04
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.03
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.03
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.02
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.02
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.02
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.02
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.01
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.01
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.01
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.0
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.0
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.0
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.0
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.99
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.99
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.99
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.99
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.99
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.99
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.99
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.99
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.98
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.98
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.98
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.98
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.98
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.98
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.97
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.97
2o07_A	304	Spermidine synthase; structural genomics, structur	98.97
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.96
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.96
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.96
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.96
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.95
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.95
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.94
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.94
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.94
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.93
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.92
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.91
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.91
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.91
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.9
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.89
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.89
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.88
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.88
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.88
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.86
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.85
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.85
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.85
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.85
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.85
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.84
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.84
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.84
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.83
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.83
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.82
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.82
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.82
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.82
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.8
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.8
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.8
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.8
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.8
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.8
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.8
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.79
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.79
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.79
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.78
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.78
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.78
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.78
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.78
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.77
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.77
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.77
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.77
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.76
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.76
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.76
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.75
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.74
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.74
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.73
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.73
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.72
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.72
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.71
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.71
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.71
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.71
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.71
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.7
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.7
3ocj_A	305	Putative exported protein; structural genomics, PS	98.7
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.7
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.7
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.7
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.69
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.68
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.68
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.68
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.67
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.67
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.66
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.66
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.66
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.66
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.65
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.64
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.64
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.64
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.64
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.63
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.63
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.63
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.63
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.62
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.62
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.62
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.62
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.61
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.61
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.6
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.59
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.59
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.59
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.59
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.58
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.57
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.57
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.57
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.56
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.56
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.56
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.56
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.56
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.56
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.55
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.53
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.53
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.53
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.53
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.53
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.52
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.51
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.51
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.51
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.48
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.47
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.47
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.47
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.46
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.45
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.43
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.43
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.43
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.43
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.42
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.42
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.42
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.42
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.42
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.4
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.4
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.39
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.38
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.37
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.36
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.36
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.34
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.33
3lkd_A	542	Type I restriction-modification system methyltrans	98.33
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.31
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.31
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.3
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.3
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.27
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.27
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.25
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.23
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.23
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.23
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.22
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.18
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.17
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.17
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.17
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.12
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.11
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.11
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.08
3khk_A	544	Type I restriction-modification system methylation	98.02
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.92
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.91
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.89
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.87
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.87
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.82
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.82
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.81
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.8
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.79
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.76
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.72
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.64
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.63
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.61
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.58
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.56
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.56
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.52
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.51
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.51
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.44
3ufb_A	530	Type I restriction-modification system methyltran	97.41
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.38
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.38
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.35
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.35
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.31
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.27
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.21
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.15
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.03
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.99
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.97
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.94
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	96.93
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.9
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	96.85
3sso_A	419	Methyltransferase; macrolide, natural product, ros	96.8
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.74
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.73
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.29
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	96.12
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.07
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.06
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	95.82
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	95.74
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	95.59
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	94.44
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	94.31
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	94.27
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	94.26
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	92.55
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	91.65
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	88.76
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	87.72
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	85.75
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	84.48
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	83.81
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	83.45
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	83.17
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	81.65
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	81.39
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	81.17
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	80.92
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	80.86
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	80.66
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	80.62
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	80.56
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	80.25
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	80.23

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.81  E-value=3.9e-19  Score=145.18  Aligned_cols=107  Identities=30%  Similarity=0.529  Sum_probs=94.2

Q ss_pred             eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCC
Q 027179          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD  187 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis  187 (227)
                      |++|++|+|+|++|.+++ ..+||+++.+++.+++++.....    .++.+|||+|||||.++++++++++.+|++||+|
T Consensus         2 m~rii~g~~~g~~l~~~~-~~~rp~~~~~~~~l~~~l~~~~~----~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~   76 (189)
T 3p9n_A            2 MTRIIGGVAGGRRIAVPP-RGTRPTTDRVRESLFNIVTARRD----LTGLAVLDLYAGSGALGLEALSRGAASVLFVESD   76 (189)
T ss_dssp             EEECCSSTTTTCEEECCS-CCC---CHHHHHHHHHHHHHHSC----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECC
T ss_pred             ceEEEeeccCCcEecCCC-CCCccCcHHHHHHHHHHHHhccC----CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECC
Confidence            789999999999999998 78999999999999999876421    4678999999999999999888888899999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       188 ~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      +.++ +.+++|++.+++ ++++++++|+.+++..
T Consensus        77 ~~~~-~~a~~~~~~~~~-~~v~~~~~d~~~~~~~  108 (189)
T 3p9n_A           77 QRSA-AVIARNIEALGL-SGATLRRGAVAAVVAA  108 (189)
T ss_dssp             HHHH-HHHHHHHHHHTC-SCEEEEESCHHHHHHH
T ss_pred             HHHH-HHHHHHHHHcCC-CceEEEEccHHHHHhh
Confidence            9999 999999999998 5799999999998754

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.78  E-value=1.2e-18  Score=140.04  Aligned_cols=108  Identities=27%  Similarity=0.428  Sum_probs=97.6

Q ss_pred             ceEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeC
Q 027179          107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (227)
Q Consensus       107 ~~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEi  186 (227)
                      .+|+|++|+|+|++|.++++..+||+++.+++.+++++...      .++.+|||+|||+|.+++.++..++.+|++||+
T Consensus         2 ~~~~i~~g~~~~~~~~~~~~~~~rp~~~~~~~~~~~~l~~~------~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~   75 (187)
T 2fhp_A            2 NAMRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEK   75 (187)
T ss_dssp             -CCBCCSSTTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEES
T ss_pred             CceEEeeccccCccccCCCCCCcCcCHHHHHHHHHHHHHhh------cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEEC
Confidence            47899999999999999999999999999999999988532      367899999999999999988888789999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       187 s~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ++.++ +.+++|++.+++.++++++++|+.+.+..
T Consensus        76 ~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  109 (187)
T 2fhp_A           76 NFAAL-KVIKENIAITKEPEKFEVRKMDANRALEQ  109 (187)
T ss_dssp             CHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred             CHHHH-HHHHHHHHHhCCCcceEEEECcHHHHHHH
Confidence            99999 99999999999877899999999987754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.77  E-value=1.5e-18  Score=144.61  Aligned_cols=107  Identities=28%  Similarity=0.471  Sum_probs=90.8

Q ss_pred             cceEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEe
Q 027179          106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE  185 (227)
Q Consensus       106 ~~~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVE  185 (227)
                      ...+++++|+|+|+++.++++..+||+++.+++.+++++...      .++.+|||+|||+|.++++++.+++.+|++||
T Consensus        11 ~~~~~ii~g~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~------~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD   84 (202)
T 2fpo_A           11 SGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALGLEALSRYAAGATLIE   84 (202)
T ss_dssp             -CEEECCSGGGTTCEEECCCC------CHHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEEC
T ss_pred             cceEEEEEEEEcCcEecCCCCCCCCCCHHHHHHHHHHHHHhh------cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEE
Confidence            357999999999999999999899999999999999998652      25679999999999999998888878999999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          186 MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       186 is~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      +|+.++ +.+++|++.+++ ++++++++|+.+++.
T Consensus        85 ~s~~~l-~~a~~~~~~~~~-~~v~~~~~D~~~~~~  117 (202)
T 2fpo_A           85 MDRAVS-QQLIKNLATLKA-GNARVVNSNAMSFLA  117 (202)
T ss_dssp             SCHHHH-HHHHHHHHHTTC-CSEEEECSCHHHHHS
T ss_pred             CCHHHH-HHHHHHHHHcCC-CcEEEEECCHHHHHh
Confidence            999999 999999999998 579999999998764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.76  E-value=2.1e-18  Score=143.62  Aligned_cols=108  Identities=29%  Similarity=0.411  Sum_probs=88.0

Q ss_pred             cceEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEe
Q 027179          106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE  185 (227)
Q Consensus       106 ~~~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVE  185 (227)
                      ...+++++|+|+|++|..+++..+||+++.+++.+++++...      .++.+|||+|||||.++++++.+++.+|++||
T Consensus        10 ~~~~~ii~G~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~------~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD   83 (201)
T 2ift_A           10 KGEVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPY------IHQSECLDGFAGSGSLGFEALSRQAKKVTFLE   83 (201)
T ss_dssp             -CEEECCSSTTTTCEEECC---------CHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEEC
T ss_pred             CCceEEEEeeeCCcEecCCCCCCcCcCHHHHHHHHHHHHHHh------cCCCeEEEcCCccCHHHHHHHHccCCEEEEEE
Confidence            446899999999999999998899999999999999988652      25679999999999999998888878999999


Q ss_pred             CCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHH
Q 027179          186 MDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLE  220 (227)
Q Consensus       186 is~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~  220 (227)
                      +|+.++ +.+++|++.+++. ++++++++|+.+++.
T Consensus        84 ~s~~~l-~~a~~~~~~~~~~~~~v~~~~~d~~~~~~  118 (201)
T 2ift_A           84 LDKTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLK  118 (201)
T ss_dssp             SCHHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred             CCHHHH-HHHHHHHHHhCCCccceEEEECCHHHHHH
Confidence            999999 9999999999984 579999999988754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.72  E-value=5.5e-17  Score=128.18  Aligned_cols=104  Identities=39%  Similarity=0.603  Sum_probs=93.1

Q ss_pred             eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCC
Q 027179          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD  187 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis  187 (227)
                      ||+|++|+|+|+++..+++  +||+++.+++.+++++....     .++.+|||+|||+|.+++.++..+.. |++||+|
T Consensus         1 ~~~i~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~   72 (171)
T 1ws6_A            1 VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKD   72 (171)
T ss_dssp             CEECCSGGGTTCEECCCTT--CCCCCHHHHHHHHHHHHHHC-----TTCCEEEEETCSSCHHHHHHHHTTCE-EEEECCC
T ss_pred             CceEeecccCCeEecCCCC--CCCCHHHHHHHHHHHHHhhc-----cCCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCC
Confidence            6899999999999999998  99999999999999887531     16779999999999999999988865 9999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       188 ~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      +.++ +.+++|++.+++  +++++++|+.+.+...
T Consensus        73 ~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~~~~  104 (171)
T 1ws6_A           73 PEAV-RLLKENVRRTGL--GARVVALPVEVFLPEA  104 (171)
T ss_dssp             HHHH-HHHHHHHHHHTC--CCEEECSCHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHcCC--ceEEEeccHHHHHHhh
Confidence            9999 999999999988  6999999999876644

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.63  E-value=6.1e-16  Score=136.51  Aligned_cols=113  Identities=18%  Similarity=0.194  Sum_probs=97.7

Q ss_pred             cccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc
Q 027179          100 QEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR  176 (227)
Q Consensus       100 ~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~  176 (227)
                      ..+|..+.+++++.|.  |+|+.|.+.++. ++||.++.+++.+++++...       ++.+|||+|||+|.+++.++..
T Consensus        72 ~~~r~~~~p~~yi~g~~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~-------~~~~vLDlG~GsG~~~~~la~~  144 (284)
T 1nv8_A           72 VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKF  144 (284)
T ss_dssp             HHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHCCCCCeEEeeeeEECCeEEEeCCCceecChhHHHHHHHHHHHhccc-------CCCEEEEEeCchhHHHHHHHHC
Confidence            4556667889999984  899999997765 79999999999999887642       4569999999999999999877


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       177 Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      +..+|++||+|+.++ +.+++|++.+++.++++++++|+++.+.
T Consensus       145 ~~~~v~~vDis~~al-~~A~~n~~~~~l~~~v~~~~~D~~~~~~  187 (284)
T 1nv8_A          145 SDAIVFATDVSSKAV-EIARKNAERHGVSDRFFVRKGEFLEPFK  187 (284)
T ss_dssp             SSCEEEEEESCHHHH-HHHHHHHHHTTCTTSEEEEESSTTGGGG
T ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECcchhhcc
Confidence            445899999999999 9999999999998789999999988653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.62  E-value=1.6e-15  Score=121.65  Aligned_cols=95  Identities=28%  Similarity=0.439  Sum_probs=70.6

Q ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       120 ~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      +|..|++..+||+++.+++.+++++...      .++.+|||+|||+|.+++.++..+..+|++||+|+.++ +.+++|+
T Consensus         2 ~l~~p~~~~~rp~~~~~~~~~~~~l~~~------~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~   74 (177)
T 2esr_A            2 SLKTLDGKITRPTSDKVRGAIFNMIGPY------FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNI   74 (177)
T ss_dssp             ----------------CHHHHHHHHCSC------CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHH
T ss_pred             cccCCCCCCCCcCHHHHHHHHHHHHHhh------cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHH
Confidence            5677888999999999999999988632      46789999999999999999988777999999999999 9999999


Q ss_pred             HHhCCCCcEEEEEccHHHHHHH
Q 027179          200 EWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       200 ~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      +.+++.++++++++|+.+++..
T Consensus        75 ~~~~~~~~~~~~~~d~~~~~~~   96 (177)
T 2esr_A           75 IMTKAENRFTLLKMEAERAIDC   96 (177)
T ss_dssp             HTTTCGGGEEEECSCHHHHHHH
T ss_pred             HHcCCCCceEEEECcHHHhHHh
Confidence            9999877899999999987654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.46  E-value=1.2e-13  Score=119.57  Aligned_cols=109  Identities=23%  Similarity=0.190  Sum_probs=91.4

Q ss_pred             ccccccceEEEEec--ccCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-
Q 027179          101 EERTTHRLLQVLGG--KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-  176 (227)
Q Consensus       101 ~~~~~~~~L~ii~G--~~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-  176 (227)
                      ..+..+.+++++.|  .|+|+.+.+.++. .+||+++.+++.+++.+.        .++.+|||+|||+|.+++.++.. 
T Consensus        60 ~~~~~~~p~~~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~--------~~~~~vLDlG~GsG~~~~~la~~~  131 (276)
T 2b3t_A           60 TRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP--------EQPCRILDLGTGTGAIALALASER  131 (276)
T ss_dssp             HHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC--------SSCCEEEEETCTTSHHHHHHHHHC
T ss_pred             HHHHcCCChhHeeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhcc--------cCCCEEEEecCCccHHHHHHHHhC
Confidence            34445677888888  4899999987664 799999999988877663        14579999999999999998864 


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       177 Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      +..+|+++|+|+.++ +.+++|++.+++. +++++++|+++.+
T Consensus       132 ~~~~v~~vD~s~~~l-~~a~~n~~~~~~~-~v~~~~~d~~~~~  172 (276)
T 2b3t_A          132 PDCEIIAVDRMPDAV-SLAQRNAQHLAIK-NIHILQSDWFSAL  172 (276)
T ss_dssp             TTSEEEEECSSHHHH-HHHHHHHHHHTCC-SEEEECCSTTGGG
T ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHcCCC-ceEEEEcchhhhc
Confidence            456899999999999 9999999999986 6999999998754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.39  E-value=2.5e-13  Score=120.92  Aligned_cols=65  Identities=20%  Similarity=0.315  Sum_probs=61.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||+|.+++.+|++|+.+|+++|+|++|+ +.+++|++.|++.++++++++|+.++.
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~-~~~~~N~~~N~v~~~v~~~~~D~~~~~  188 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP  188 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCcHHHhc
Confidence            46889999999999999999999988999999999999 999999999999999999999998754

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.38  E-value=1.9e-12  Score=118.73  Aligned_cols=67  Identities=15%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-cEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~-~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||||.+++.++..|+.+|++||+|+.++ +.+++|++.|++.+ +++++++|+++++...
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al-~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~  279 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYA  279 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHH
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHH
Confidence            5679999999999999999988888999999999999 99999999999975 7999999999988764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.36  E-value=3.9e-12  Score=117.23  Aligned_cols=88  Identities=19%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh--
Q 027179          126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--  202 (227)
Q Consensus       126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~n--  202 (227)
                      +.+++|+.+..+...+..+..       .++.+|||+|||||.+++.++++ ++.+|+++|+|+.++ +.+++|++.|  
T Consensus        25 ~~F~np~~~~nr~l~~~~l~~-------~~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av-~~a~~N~~~n~~   96 (378)
T 2dul_A           25 PVFYNPRMALNRDIVVVLLNI-------LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFD   96 (378)
T ss_dssp             CCCCCGGGHHHHHHHHHHHHH-------HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCC
T ss_pred             CceeCCchHHHHHHHHHHHHH-------cCCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhcc
Confidence            568999999888776666554       25779999999999999999987 667899999999999 9999999999  


Q ss_pred             -------------CCCCcEEEEEccHHHHHHHH
Q 027179          203 -------------GFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       203 -------------gl~~~v~~i~gDa~~~L~~~  222 (227)
                                   ++.+ ++++++|+.+++...
T Consensus        97 ~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~~~~  128 (378)
T 2dul_A           97 GELRESKGRAILKGEKT-IVINHDDANRLMAER  128 (378)
T ss_dssp             SCCEECSSEEEEESSSE-EEEEESCHHHHHHHS
T ss_pred             cccccccccccccCCCc-eEEEcCcHHHHHHhc
Confidence                         8864 999999999987653

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.32  E-value=4.2e-12  Score=117.98  Aligned_cols=65  Identities=17%  Similarity=0.249  Sum_probs=60.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~-v~~i~gDa~~~L~  220 (227)
                      ++.+|||+|||||.+|+++++  +|+.+|++||+|+.|+ +.+++|++.|+++++ ++++++|+++++.
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av-~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~  119 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAI-EIMKENFKLNNIPEDRYEIHGMEANFFLR  119 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHHH
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCceEEEEeCCHHHHHH
Confidence            467999999999999999998  4678999999999999 999999999999877 9999999999886

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.32  E-value=2.2e-12  Score=111.81  Aligned_cols=66  Identities=18%  Similarity=0.117  Sum_probs=60.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|||+|||||.+++.++..+ +.+|+++|+|+.++ +.|++|++.||+.++++++++|+++.+.
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~i~~~~~d~l~~l~   80 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPY-QSAVKNVEAHGLKEKIQVRLANGLAAFE   80 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECchhhhcc
Confidence            356799999999999999999886 56899999999999 9999999999999899999999987654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.30  E-value=1.7e-11  Score=110.80  Aligned_cols=86  Identities=22%  Similarity=0.198  Sum_probs=72.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-c
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-V  207 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~-~  207 (227)
                      .-|++...++.+.+.+...      .++.+|||+|||||.+++.++..|+ +|++||+|+.++ +.+++|++.|++.+ +
T Consensus       133 ~f~dq~~~~~~l~~~~~~~------~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al-~~a~~n~~~~gl~~~~  204 (332)
T 2igt_A          133 VFPEQIVHWEWLKNAVETA------DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAI-GWAKENQVLAGLEQAP  204 (332)
T ss_dssp             CCGGGHHHHHHHHHHHHHS------SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHH-HHHHHHHHHHTCTTSC
T ss_pred             echHHHHHHHHHHHHHHhc------CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHcCCCccc
Confidence            3556776666666666421      2567999999999999999999888 999999999999 99999999999976 5


Q ss_pred             EEEEEccHHHHHHHH
Q 027179          208 SSIHTVRVETFLERA  222 (227)
Q Consensus       208 v~~i~gDa~~~L~~~  222 (227)
                      ++++++|+++++...
T Consensus       205 v~~i~~D~~~~l~~~  219 (332)
T 2igt_A          205 IRWICEDAMKFIQRE  219 (332)
T ss_dssp             EEEECSCHHHHHHHH
T ss_pred             eEEEECcHHHHHHHH
Confidence            999999999988653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.30  E-value=5.4e-12  Score=105.30  Aligned_cols=80  Identities=15%  Similarity=0.092  Sum_probs=67.7

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i  211 (227)
                      +.+.+...++..+..       .++.+|||+|||+|.+++.++.. ..+|++||+++.++ +.+++|++.+++.++++++
T Consensus        39 ~~~~~~~~~l~~l~~-------~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~  109 (204)
T 3njr_A           39 TKSPMRALTLAALAP-------RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRI-ENIQKNIDTYGLSPRMRAV  109 (204)
T ss_dssp             CCHHHHHHHHHHHCC-------CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEE
T ss_pred             CcHHHHHHHHHhcCC-------CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHH-HHHHHHHHHcCCCCCEEEE
Confidence            445666666666653       46789999999999999999988 45899999999999 9999999999997679999


Q ss_pred             EccHHHHHH
Q 027179          212 TVRVETFLE  220 (227)
Q Consensus       212 ~gDa~~~L~  220 (227)
                      ++|+.+.+.
T Consensus       110 ~~d~~~~~~  118 (204)
T 3njr_A          110 QGTAPAALA  118 (204)
T ss_dssp             ESCTTGGGT
T ss_pred             eCchhhhcc
Confidence            999987554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.29  E-value=2.8e-12  Score=108.87  Aligned_cols=99  Identities=13%  Similarity=-0.063  Sum_probs=75.1

Q ss_pred             ecccCCeeecCCCCC-CCC----CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeC
Q 027179          113 GGKARRKKLLSPKGM-DVR----PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEM  186 (227)
Q Consensus       113 ~G~~~Gr~L~v~~g~-~~R----Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEi  186 (227)
                      ...|+|+++.++++. .++    |.++.+.+.+++.+...     ..++.+|||+|||+|.+++.++.+ ...+|++||+
T Consensus        23 ~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~   97 (254)
T 2h00_A           23 LREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD-----KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEV   97 (254)
T ss_dssp             HHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGG-----GCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEES
T ss_pred             HHHcCCeeeecCccccCCCccchHHHHHHHHHHHhhcccc-----CCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEEC
Confidence            346778888887764 465    55555554444322210     014679999999999999998865 2358999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       187 s~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.++ +.+++|++.+++.++++++++|+.+
T Consensus        98 s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  127 (254)
T 2h00_A           98 DDMCF-NYAKKNVEQNNLSDLIKVVKVPQKT  127 (254)
T ss_dssp             CHHHH-HHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred             CHHHH-HHHHHHHHHcCCCccEEEEEcchhh
Confidence            99999 9999999999998789999999754

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.29  E-value=3.5e-12  Score=110.98  Aligned_cols=66  Identities=17%  Similarity=0.106  Sum_probs=60.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|+|+|||||.+++.++..| +.+|+|+|+++.++ +.|++|++.|++.++++++++|+++.+.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al-~~A~~N~~~~gl~~~I~~~~gD~l~~~~   86 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPY-QSALKNVSEHGLTSKIDVRLANGLSAFE   86 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhccc
Confidence            356799999999999999999886 56899999999999 9999999999999899999999988664

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.29  E-value=2.1e-11  Score=97.07  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=83.1

Q ss_pred             cceEEEEecccCCeeecC--CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEE
Q 027179          106 HRLLQVLGGKARRKKLLS--PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHF  183 (227)
Q Consensus       106 ~~~L~ii~G~~~Gr~L~v--~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~a  183 (227)
                      ...++++.+.+.|..+.+  ..+...+++.+...+.+++.+..       .++.+|||+|||+|.+++.++.. ..+|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~   79 (194)
T 1dus_A            8 KSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV-------DKDDDILDLGCGYGVIGIALADE-VKSTTM   79 (194)
T ss_dssp             CCCEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC-------CTTCEEEEETCTTSHHHHHHGGG-SSEEEE
T ss_pred             CccccEEeeecCCCceEEEeCCCcCCccccchHHHHHHHHccc-------CCCCeEEEeCCCCCHHHHHHHHc-CCeEEE
Confidence            447788899998888876  34445555555566667666643       36779999999999999998887 458999


Q ss_pred             EeCCHHHHHHHHHHHHHHhCCCC-cEEEEEccHHHH
Q 027179          184 VEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETF  218 (227)
Q Consensus       184 VEis~~Al~~~ar~N~~~ngl~~-~v~~i~gDa~~~  218 (227)
                      +|+++.++ +.+++|+..+++.+ +++++++|+.+.
T Consensus        80 ~D~~~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~  114 (194)
T 1dus_A           80 ADINRRAI-KLAKENIKLNNLDNYDIRVVHSDLYEN  114 (194)
T ss_dssp             EESCHHHH-HHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred             EECCHHHH-HHHHHHHHHcCCCccceEEEECchhcc
Confidence            99999999 99999999999864 599999998764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.29  E-value=1.7e-11  Score=97.43  Aligned_cols=84  Identities=19%  Similarity=0.157  Sum_probs=73.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      .+|++.+.+...+++.+..       .++.+|||+|||+|.+++.++..+ .+|+++|+++.++ +.+++|++.+++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~-------~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~-~~a~~~~~~~~~~~~   83 (192)
T 1l3i_A           13 VPGPTAMEVRCLIMCLAEP-------GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAI-STTEMNLQRHGLGDN   83 (192)
T ss_dssp             SCCCCCHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHTTCCTT
T ss_pred             CCCCChHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHH-HHHHHHHHHcCCCcc
Confidence            5679999999888877753       467899999999999999998877 7899999999999 999999999998667


Q ss_pred             EEEEEccHHHHHH
Q 027179          208 SSIHTVRVETFLE  220 (227)
Q Consensus       208 v~~i~gDa~~~L~  220 (227)
                      ++++++|+.+.+.
T Consensus        84 ~~~~~~d~~~~~~   96 (192)
T 1l3i_A           84 VTLMEGDAPEALC   96 (192)
T ss_dssp             EEEEESCHHHHHT
T ss_pred             eEEEecCHHHhcc
Confidence            9999999988554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.29  E-value=3.8e-12  Score=111.67  Aligned_cols=66  Identities=12%  Similarity=-0.004  Sum_probs=60.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|||+|||+|.+++.++..+ +.+|+++|+|+.++ +.|++|++.||+.++++++++|+++.+.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~I~v~~gD~l~~~~   86 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPF-QSAQKQVRSSGLTEQIDVRKGNGLAVIE   86 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEecchhhccC
Confidence            356799999999999999999886 56899999999999 9999999999999899999999987664

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.28  E-value=1.7e-11  Score=111.48  Aligned_cols=93  Identities=17%  Similarity=0.144  Sum_probs=71.4

Q ss_pred             eeecCCCCCCCCCCHH---HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 027179          119 KKLLSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL  195 (227)
Q Consensus       119 r~L~v~~g~~~RPtte---~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a  195 (227)
                      .++.+.++.+..+.++   .+.+.+++++.        ..+.+|||||||+|.+++.++. ++.+|++||+++.|+ +.+
T Consensus       182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~--------~~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai-~~a  251 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAAMNIQMLEWALDVTK--------GSKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSV-AAA  251 (369)
T ss_dssp             CEEEEETTSCCCSBHHHHHHHHHHHHHHTT--------TCCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHH-HHH
T ss_pred             EEEEECCCCeecCCHHHHHHHHHHHHHHhh--------cCCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHH-HHH
Confidence            4555656655555554   33344444432        2357899999999999998776 457999999999999 999


Q ss_pred             HHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          196 IPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       196 r~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++|++.|++. +++++++|+.+++...
T Consensus       252 ~~n~~~ng~~-~v~~~~~d~~~~~~~~  277 (369)
T 3bt7_A          252 QYNIAANHID-NVQIIRMAAEEFTQAM  277 (369)
T ss_dssp             HHHHHHTTCC-SEEEECCCSHHHHHHH
T ss_pred             HHHHHHcCCC-ceEEEECCHHHHHHHH
Confidence            9999999995 7999999999987654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.28  E-value=2.6e-12  Score=104.21  Aligned_cols=86  Identities=21%  Similarity=0.184  Sum_probs=56.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      ..+||.++.+.+.+++.+...      .++.+|||+|||+|.+++.++..+ ..+|++||+|+.++ +.+++|+..+++ 
T Consensus         8 ~~p~~~~~~~~~~~~~~l~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~-   79 (215)
T 4dzr_A            8 LIPRPDTEVLVEEAIRFLKRM------PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDAL-AVARRNAERFGA-   79 (215)
T ss_dssp             GSCCHHHHHHHHHHHHHHTTC------CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------
T ss_pred             cCCCccHHHHHHHHHHHhhhc------CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhCC-
Confidence            379999999999988887541      367899999999999999998874 34899999999999 999999999987 


Q ss_pred             CcEEEEEccHHHHHHH
Q 027179          206 DVSSIHTVRVETFLER  221 (227)
Q Consensus       206 ~~v~~i~gDa~~~L~~  221 (227)
                       +++++++|+.+.+..
T Consensus        80 -~~~~~~~d~~~~~~~   94 (215)
T 4dzr_A           80 -VVDWAAADGIEWLIE   94 (215)
T ss_dssp             ----CCHHHHHHHHHH
T ss_pred             -ceEEEEcchHhhhhh
Confidence             689999999986654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.27  E-value=2.6e-11  Score=101.76  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=71.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      ..++.+.+.+.++..+...      .++.+|||+|||+|.+++.++..| .+|++||+|+.++ +.+++|++.+++.+++
T Consensus        58 ~~~~~~~~~~~l~~~~~~~------~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~  129 (241)
T 3gdh_A           58 FSVTPEKIAEHIAGRVSQS------FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKI-ALARNNAEVYGIADKI  129 (241)
T ss_dssp             HHCCCHHHHHHHHHHHHHH------SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHHHTTCGGGE
T ss_pred             eecCHHHHHHHHHHHhhhc------cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHH-HHHHHHHHHcCCCcCe
Confidence            4556676777777776542      367899999999999999999887 6899999999999 9999999999986689


Q ss_pred             EEEEccHHHHH
Q 027179          209 SIHTVRVETFL  219 (227)
Q Consensus       209 ~~i~gDa~~~L  219 (227)
                      +++++|+.+..
T Consensus       130 ~~~~~d~~~~~  140 (241)
T 3gdh_A          130 EFICGDFLLLA  140 (241)
T ss_dssp             EEEESCHHHHG
T ss_pred             EEEECChHHhc
Confidence            99999998865

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.26  E-value=3.1e-11  Score=112.17  Aligned_cols=102  Identities=19%  Similarity=0.186  Sum_probs=82.0

Q ss_pred             eEEEEecc--cC---CeeecCCCCCCCC---CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCC
Q 027179          108 LLQVLGGK--AR---RKKLLSPKGMDVR---PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS  179 (227)
Q Consensus       108 ~L~ii~G~--~~---Gr~L~v~~g~~~R---Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~  179 (227)
                      .++++.|.  +.   |.+|.++++.+..   +.++.+.+.+++++..       .++.+|||+|||+|.+++.++.. ..
T Consensus       238 ~~~~l~g~~~~~~~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~-------~~~~~VLDlgcG~G~~~~~la~~-~~  309 (433)
T 1uwv_A          238 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV-------QPEDRVLDLFCGMGNFTLPLATQ-AA  309 (433)
T ss_dssp             CCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC-------CTTCEEEEESCTTTTTHHHHHTT-SS
T ss_pred             eEEEEeCCCcEEEECCEEEEECcccccccCHHHHHHHHHHHHHhhcC-------CCCCEEEECCCCCCHHHHHHHhh-CC
Confidence            45666664  44   8899998876544   3456666667666643       35679999999999999999877 46


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       180 ~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      +|++||+++.++ +.|++|++.|++. +++++++|+.+.+
T Consensus       310 ~V~gvD~s~~al-~~A~~n~~~~~~~-~v~f~~~d~~~~l  347 (433)
T 1uwv_A          310 SVVGVEGVPALV-EKGQQNARLNGLQ-NVTFYHENLEEDV  347 (433)
T ss_dssp             EEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCTTSCC
T ss_pred             EEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEECCHHHHh
Confidence            899999999999 9999999999986 7999999998754

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.25  E-value=1.4e-11  Score=107.60  Aligned_cols=64  Identities=20%  Similarity=0.331  Sum_probs=59.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ++.+|||+|||+|.+++.++..|+.+|++||+|+.++ +.+++|++.|++.++++++++|+.+++
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~-~~a~~n~~~n~~~~~v~~~~~D~~~~~  188 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP  188 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECCHHHhc
Confidence            5789999999999999999988876899999999999 999999999999888999999998654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.25  E-value=2.7e-11  Score=119.51  Aligned_cols=68  Identities=22%  Similarity=0.258  Sum_probs=62.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~  222 (227)
                      .++++|||+|||||.+++.++..|+.+|++||+|+.++ +++++|++.|++. ++++++++|+++++...
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al-~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~  606 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYL-EWAERNLRLNGLTGRAHRLIQADCLAWLREA  606 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCSTTEEEEESCHHHHHHHC
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHhc
Confidence            36789999999999999999998998999999999999 9999999999997 58999999999988753

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.25  E-value=5.3e-11  Score=94.11  Aligned_cols=82  Identities=20%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      .+++.+.+.+.+++.+..       .++.+|||+|||+|.+++.++. +..+|+++|+++.++ +.+++|++.+++. ++
T Consensus        16 ~~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~-~~a~~~~~~~~~~-~~   85 (183)
T 2yxd_A           16 VPITKEEIRAVSIGKLNL-------NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAI-EVTKQNLAKFNIK-NC   85 (183)
T ss_dssp             BCCCCHHHHHHHHHHHCC-------CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHH-HHHHHHHHHTTCC-SE
T ss_pred             CCcCHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHH-HHHHHHHHHcCCC-cE
Confidence            468888888888887753       3677999999999999999887 556899999999999 9999999999984 69


Q ss_pred             EEEEccHHHHHH
Q 027179          209 SIHTVRVETFLE  220 (227)
Q Consensus       209 ~~i~gDa~~~L~  220 (227)
                      +++++|+.+.+.
T Consensus        86 ~~~~~d~~~~~~   97 (183)
T 2yxd_A           86 QIIKGRAEDVLD   97 (183)
T ss_dssp             EEEESCHHHHGG
T ss_pred             EEEECCcccccc
Confidence            999999987443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.25  E-value=2.3e-11  Score=111.26  Aligned_cols=67  Identities=24%  Similarity=0.317  Sum_probs=62.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC-CCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl-~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++..|+.+|++||+|+.++ +.+++|++.|++ .++++++++|+++++...
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al-~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~  287 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTY  287 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHH
Confidence            5679999999999999999998888999999999999 999999999999 667999999999988754

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=113.97  Aligned_cols=62  Identities=27%  Similarity=0.288  Sum_probs=57.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++++|||+|||||.+++.||+.||++|++||.++ ++ +.|++|++.||+.++|+++++|+.+
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~  143 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVET  143 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeee
Confidence            47889999999999999999999999999999997 66 8999999999999999999999865

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.22  E-value=3e-11  Score=103.55  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCC-CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASL-RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~-~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      ..+|+.++.+.-.  .++..       . ++.+|||+|||+|.+++.++.++..+|++||+++.++ +.+++|++.+++.
T Consensus        29 ~~~~~~~d~~ll~--~~~~~-------~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~-~~a~~n~~~~~~~   98 (259)
T 3lpm_A           29 SVFSFSIDAVLLA--KFSYL-------PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLA-DMAKRSVAYNQLE   98 (259)
T ss_dssp             TTBCCCHHHHHHH--HHCCC-------CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHH-HHHHHHHHHTTCT
T ss_pred             CCccCcHHHHHHH--HHhcC-------CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHH-HHHHHHHHHCCCc
Confidence            3678888854322  22221       3 5789999999999999999888766999999999999 9999999999998


Q ss_pred             CcEEEEEccHHHHH
Q 027179          206 DVSSIHTVRVETFL  219 (227)
Q Consensus       206 ~~v~~i~gDa~~~L  219 (227)
                      ++++++++|+.++.
T Consensus        99 ~~v~~~~~D~~~~~  112 (259)
T 3lpm_A           99 DQIEIIEYDLKKIT  112 (259)
T ss_dssp             TTEEEECSCGGGGG
T ss_pred             ccEEEEECcHHHhh
Confidence            88999999998765

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.22  E-value=2.5e-11  Score=106.08  Aligned_cols=95  Identities=15%  Similarity=0.086  Sum_probs=64.6

Q ss_pred             ccceEEEEecc--cCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEE
Q 027179          105 THRLLQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVH  182 (227)
Q Consensus       105 ~~~~L~ii~G~--~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~  182 (227)
                      ...+++++.|.  |+|..+        .|.++.+.+.+......       ..+.+|||||||+|.+++.++..|+.+|+
T Consensus        42 ~~~~~~~i~g~~~~~g~~~--------~~~~~~l~~~l~~~~~~-------~~~~~vLDlG~G~G~~~~~~a~~~~~~v~  106 (281)
T 3bzb_A           42 QCSVQVQTTQEHPLWTSHV--------WSGARALADTLCWQPEL-------IAGKTVCELGAGAGLVSIVAFLAGADQVV  106 (281)
T ss_dssp             CCEEEEECC-------------------CHHHHHHHHHHHCGGG-------TTTCEEEETTCTTSHHHHHHHHTTCSEEE
T ss_pred             cCCeEEEECCCCCCCCcee--------ecHHHHHHHHHHhcchh-------cCCCeEEEecccccHHHHHHHHcCCCEEE
Confidence            34578888885  444333        36677777776554332       36779999999999999999888877999


Q ss_pred             EEeC-CHHHHHHHHHHHH-----HHhCCC----CcEEEEEccH
Q 027179          183 FVEM-DPWVVSNVLIPNL-----EWTGFL----DVSSIHTVRV  215 (227)
Q Consensus       183 aVEi-s~~Al~~~ar~N~-----~~ngl~----~~v~~i~gDa  215 (227)
                      ++|+ ++.++ +.+++|+     +.+++.    ++++++..|+
T Consensus       107 ~~D~s~~~~~-~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~  148 (281)
T 3bzb_A          107 ATDYPDPEIL-NSLESNIREHTANSCSSETVKRASPKVVPYRW  148 (281)
T ss_dssp             EEECSCHHHH-HHHHHHHHTTCC----------CCCEEEECCT
T ss_pred             EEeCCCHHHH-HHHHHHHHHhhhhhcccccCCCCCeEEEEecC
Confidence            9999 89999 9999999     555654    4688886554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.21  E-value=2.2e-11  Score=99.94  Aligned_cols=80  Identities=18%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      +.+.++..+++.+..       .++.+|||+|||+|.+++.++..+ ..+|++||+|+.++ +.+++|++.+++ +++++
T Consensus        24 ~~~~i~~~~l~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~v~~   94 (204)
T 3e05_A           24 TKQEVRAVTLSKLRL-------QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYL-GFIRDNLKKFVA-RNVTL   94 (204)
T ss_dssp             CCHHHHHHHHHHTTC-------CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHH-HHHHHHHHHHTC-TTEEE
T ss_pred             ChHHHHHHHHHHcCC-------CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCC-CcEEE
Confidence            566677777776653       467899999999999999998875 46899999999999 999999999998 57999


Q ss_pred             EEccHHHHHH
Q 027179          211 HTVRVETFLE  220 (227)
Q Consensus       211 i~gDa~~~L~  220 (227)
                      +++|+.+.+.
T Consensus        95 ~~~d~~~~~~  104 (204)
T 3e05_A           95 VEAFAPEGLD  104 (204)
T ss_dssp             EECCTTTTCT
T ss_pred             EeCChhhhhh
Confidence            9999876543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.20  E-value=6.3e-11  Score=102.29  Aligned_cols=105  Identities=13%  Similarity=0.039  Sum_probs=81.9

Q ss_pred             EEEecccCCeeecCCCCC---CCCCCHHHHHHHHHHH-----------HHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179          110 QVLGGKARRKKLLSPKGM---DVRPMMEVVKGAAFDI-----------LQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (227)
Q Consensus       110 ~ii~G~~~Gr~L~v~~g~---~~RPtte~v~ealf~~-----------L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas  175 (227)
                      ..+.|.++|..+.++.+.   .+||+++.+.+.++..           +....+   ..++.+|||+|||+|.+++.++.
T Consensus        56 ~~i~g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~la~  132 (277)
T 1o54_A           56 NEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLD---VKEGDRIIDTGVGSGAMCAVLAR  132 (277)
T ss_dssp             HHHTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHH
T ss_pred             HHhcCCCCCcEEEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhC---CCCCCEEEEECCcCCHHHHHHHH
Confidence            445588889999998874   4699999877543211           111111   13577999999999999999987


Q ss_pred             c-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          176 R-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       176 ~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      . + ..+|+++|+++.++ +.+++|++.+++.++++++++|+.+.
T Consensus       133 ~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~  176 (277)
T 1o54_A          133 AVGSSGKVFAYEKREEFA-KLAESNLTKWGLIERVTIKVRDISEG  176 (277)
T ss_dssp             HTTTTCEEEEECCCHHHH-HHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred             HhCCCcEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHc
Confidence            6 5 56999999999999 99999999999866899999998765

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.20  E-value=5.2e-11  Score=108.73  Aligned_cols=67  Identities=22%  Similarity=0.247  Sum_probs=62.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++..|+.+|++||+++.++ +.+++|++.|++.++++++++|+++++..+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l-~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~  283 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEEMEKL  283 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEECCHHHHHHHH
Confidence            6789999999999999999988888999999999999 999999999999767999999999987653

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.19  E-value=1.1e-10  Score=95.59  Aligned_cols=81  Identities=26%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~  209 (227)
                      .++...+.+.++..+....    ..++.+|||+|||+|.+++.++..|+.+|++||+|+.++ +.+++|++.+++  +++
T Consensus        28 ~~~~~~~~~~l~~~~~~~~----~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~  100 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLG----DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKG--KFK  100 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTT----SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTT--SEE
T ss_pred             ecCchHHHHHHHHHHHHcC----CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHcCC--CEE
Confidence            4556666666665554321    146789999999999999999988877899999999999 999999999988  699


Q ss_pred             EEEccHHH
Q 027179          210 IHTVRVET  217 (227)
Q Consensus       210 ~i~gDa~~  217 (227)
                      ++++|+.+
T Consensus       101 ~~~~d~~~  108 (207)
T 1wy7_A          101 VFIGDVSE  108 (207)
T ss_dssp             EEESCGGG
T ss_pred             EEECchHH
Confidence            99999876

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.18  E-value=4.9e-11  Score=107.25  Aligned_cols=62  Identities=13%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ++.+|||+|||+|.+++. ++ ++.+|++||+|+.++ +.+++|++.|++.++++++++|+++++
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai-~~a~~n~~~n~l~~~v~~~~~D~~~~~  256 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAI-ELLKKNIKLNKLEHKIIPILSDVREVD  256 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred             CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECChHHhc
Confidence            678999999999999999 77 678999999999999 999999999999778999999998764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.16  E-value=2e-10  Score=92.40  Aligned_cols=61  Identities=11%  Similarity=0.001  Sum_probs=54.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.. ..+|++||+|+.++ +.+++|++.+++ ++++++++|+.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l-~~a~~~~~~~~~-~~v~~~~~~~~~   81 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQAL-GKTSQRLSDLGI-ENTELILDGHEN   81 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHHTC-CCEEEEESCGGG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEeCcHHH
Confidence            36789999999999999999887 46899999999999 999999999998 579999977654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.15  E-value=1.1e-10  Score=101.70  Aligned_cols=63  Identities=14%  Similarity=0.075  Sum_probs=57.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++.. ++.+|++||+++.++ +.+++|++.|++. +++++++|+.++
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av-~~a~~n~~~n~l~-~~~~~~~d~~~~  181 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAY-HYLCENIKLNKLN-NVIPILADNRDV  181 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHH-HHHHHHHHHTTCS-SEEEEESCGGGC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CEEEEECChHHc
Confidence            36789999999999999999886 456999999999999 9999999999996 588999999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.14  E-value=3.2e-10  Score=92.82  Aligned_cols=62  Identities=18%  Similarity=0.219  Sum_probs=56.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..+++.+ ++++++|+.+.
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~  121 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESM-TAAEENAALNGIYD-IALQKTSLLAD  121 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCC-CEEEESSTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCc-eEEEecccccc
Confidence            5789999999999999998888878999999999999 99999999999875 99999998654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.12  E-value=8.6e-11  Score=97.65  Aligned_cols=88  Identities=13%  Similarity=-0.044  Sum_probs=68.1

Q ss_pred             cccCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccC-CCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179          114 GKARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG-TGSVGIEAISRGCSEVHFVEMDPWVV  191 (227)
Q Consensus       114 G~~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsG-TG~isI~aas~Ga~~V~aVEis~~Al  191 (227)
                      .+|+|..+...++. .+||.++.+.      +....     .++.+|||+||| +|.+++.++..+..+|+++|+|+.++
T Consensus        24 ~~~~~~~~~~~~~~~~p~~~~~~l~------~~~~~-----~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~   92 (230)
T 3evz_A           24 KALFGLDIEYHPKGLVTTPISRYIF------LKTFL-----RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFF   92 (230)
T ss_dssp             HHHHCCCCCCCTTSCCCCHHHHHHH------HHTTC-----CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHH
T ss_pred             HHhcCCceecCCCeEeCCCchhhhH------hHhhc-----CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence            35667777775553 5666665431      11111     367899999999 99999999887345899999999999


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEccH
Q 027179          192 SNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       192 ~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                       +.+++|++.+++  +++++++|+
T Consensus        93 -~~a~~~~~~~~~--~v~~~~~d~  113 (230)
T 3evz_A           93 -EYARRNIERNNS--NVRLVKSNG  113 (230)
T ss_dssp             -HHHHHHHHHTTC--CCEEEECSS
T ss_pred             -HHHHHHHHHhCC--CcEEEeCCc
Confidence             999999999998  689999995

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.11  E-value=1e-10  Score=92.77  Aligned_cols=81  Identities=16%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~  209 (227)
                      .+.+.++..+++.+..       .++.+|||+|||+|.+++.++.. +..+|+++|+++.++ +.+++|++.+++.+++ 
T Consensus         8 ~t~~~~~~~~~~~~~~-------~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~-   78 (178)
T 3hm2_A            8 LTKQHVRALAISALAP-------KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERR-ERILSNAINLGVSDRI-   78 (178)
T ss_dssp             SHHHHHHHHHHHHHCC-------CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHH-HHHHHHHHTTTCTTSE-
T ss_pred             ccHHHHHHHHHHHhcc-------cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHHHHhCCCCCE-
Confidence            3556677777776643       36779999999999999998876 356899999999999 9999999999987678 


Q ss_pred             EEEccHHHHHH
Q 027179          210 IHTVRVETFLE  220 (227)
Q Consensus       210 ~i~gDa~~~L~  220 (227)
                      ++++|+.+.+.
T Consensus        79 ~~~~d~~~~~~   89 (178)
T 3hm2_A           79 AVQQGAPRAFD   89 (178)
T ss_dssp             EEECCTTGGGG
T ss_pred             EEecchHhhhh
Confidence            89999876554

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.11  E-value=1.8e-10  Score=106.63  Aligned_cols=63  Identities=24%  Similarity=0.196  Sum_probs=57.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ++.+|||+|||||.+++.++..|+. |++||+|+.++ +++++|++.|++.+  +++++|+++++..
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al-~~a~~n~~~ng~~~--~~~~~D~~~~l~~  276 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEAL-GVLDQAALRLGLRV--DIRHGEALPTLRG  276 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHH-HHHHHHHHHHTCCC--EEEESCHHHHHHT
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHH-HHHHHHHHHhCCCC--cEEEccHHHHHHH
Confidence            4789999999999999999998876 99999999999 99999999999974  5669999998864

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.10  E-value=9.3e-11  Score=102.55  Aligned_cols=66  Identities=17%  Similarity=0.040  Sum_probs=60.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCH-------HHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP-------WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~-------~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++..|+ +|++||+|+       .++ +.+++|++.|++.++++++++|+.+++..+
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l-~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~  155 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGI-RRALLNPETQDTAARINLHFGNAAEQMPAL  155 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHH-HHHHHSHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHH-HHHHhHHHhhCCccCeEEEECCHHHHHHhh
Confidence            467999999999999999998875 799999999       999 999999999998777999999999987754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.10  E-value=3.9e-10  Score=97.09  Aligned_cols=79  Identities=23%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      .++|++..+.+.+-..+         .++.+|||+|||+|.+++.++..|+ +|+++|+|+.++ +.+++|++.|++.  
T Consensus       102 g~~~tt~~~~~~l~~~~---------~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v-~~a~~n~~~~~~~--  168 (254)
T 2nxc_A          102 GHHETTRLALKALARHL---------RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-PQAEANAKRNGVR--  168 (254)
T ss_dssp             CCSHHHHHHHHHHHHHC---------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-HHHHHHHHHTTCC--
T ss_pred             CCCHHHHHHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHH-HHHHHHHHHcCCc--
Confidence            46777776655543221         3578999999999999999988888 999999999999 9999999999985  


Q ss_pred             EEEEEccHHHHH
Q 027179          208 SSIHTVRVETFL  219 (227)
Q Consensus       208 v~~i~gDa~~~L  219 (227)
                      ++++++|+.+.+
T Consensus       169 v~~~~~d~~~~~  180 (254)
T 2nxc_A          169 PRFLEGSLEAAL  180 (254)
T ss_dssp             CEEEESCHHHHG
T ss_pred             EEEEECChhhcC
Confidence            899999998753

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.10  E-value=4.6e-10  Score=92.91  Aligned_cols=67  Identities=13%  Similarity=0.052  Sum_probs=60.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++.. + ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+..+
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  132 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST-ALAKEYWEKAGLSDKIGLRLSPAKDTLAEL  132 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeCCHHHHHHHh
Confidence            5679999999999999998875 2 56899999999999 999999999999888999999999887664

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.09  E-value=4.3e-10  Score=94.46  Aligned_cols=83  Identities=16%  Similarity=0.009  Sum_probs=69.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      ...+|..+...+.++..+..       .++.+|||+|||+|.+++.++.....+|+++|+++.++ +.+++|++.+++.+
T Consensus        15 ~~~~~~~~~~~~~l~~~~~~-------~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~   86 (256)
T 1nkv_A           15 RIHNPFTEEKYATLGRVLRM-------KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSE   86 (256)
T ss_dssp             SSSSSCCHHHHHHHHHHTCC-------CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTT
T ss_pred             cccCCCCHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHH-HHHHHHHHhcCCCc
Confidence            35677788777777766543       46789999999999999998876334899999999999 99999999999977


Q ss_pred             cEEEEEccHHH
Q 027179          207 VSSIHTVRVET  217 (227)
Q Consensus       207 ~v~~i~gDa~~  217 (227)
                      +++++++|+.+
T Consensus        87 ~v~~~~~d~~~   97 (256)
T 1nkv_A           87 RVHFIHNDAAG   97 (256)
T ss_dssp             TEEEEESCCTT
T ss_pred             ceEEEECChHh
Confidence            89999999865

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.08  E-value=3e-10  Score=92.68  Aligned_cols=84  Identities=21%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      .||.++.+.+.+++.+....    ..++.+|||+|||+|.+++.++.. +..+|+++|+++.++ +.+++|++.+++.+ 
T Consensus        43 ~~~~~~~~~~~~~~~l~~~~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-  116 (207)
T 1jsx_A           43 VRDPNEMLVRHILDSIVVAP----YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLEN-  116 (207)
T ss_dssp             -----CHHHHHHHHHHHHGG----GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSS-
T ss_pred             cCCHHHHHHHHHHhhhhhhh----hcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-
Confidence            48888888888888775421    024679999999999999998875 456899999999999 99999999999875 


Q ss_pred             EEEEEccHHHH
Q 027179          208 SSIHTVRVETF  218 (227)
Q Consensus       208 v~~i~gDa~~~  218 (227)
                      ++++++|+.+.
T Consensus       117 v~~~~~d~~~~  127 (207)
T 1jsx_A          117 IEPVQSRVEEF  127 (207)
T ss_dssp             EEEEECCTTTS
T ss_pred             eEEEecchhhC
Confidence            99999998764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.08  E-value=4.7e-10  Score=93.55  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++..  ...+|++||+++.++ +.+++|++.+++.++++++++|+.+.+..+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  126 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCA-AITQQMLNFAGLQDKVTILNGASQDLIPQL  126 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHH-HHHHHHHHHcCCCCceEEEECCHHHHHHHH
Confidence            5679999999999999998873  246899999999999 999999999999888999999998877654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.08  E-value=2.4e-10  Score=104.15  Aligned_cols=65  Identities=20%  Similarity=0.196  Sum_probs=59.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++.. +.+|++||+++.++ +.+++|++.|++.+ ++++++|+++++..+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~  273 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEAL-RRAEENARLNGLGN-VRVLEANAFDLLRRL  273 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHH-HHHHHHHHHTTCTT-EEEEESCHHHHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCCC-ceEEECCHHHHHHHH
Confidence            4679999999999999999887 67899999999999 99999999999975 999999999988754

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.08  E-value=3.4e-10  Score=95.10  Aligned_cols=82  Identities=12%  Similarity=0.063  Sum_probs=67.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      .+|..+.....++..+...      .++.+|||+|||+|.+++.++..+..+|++||+++.++ +.+++|+..+++.+++
T Consensus        26 ~~~~~~~~~~~~l~~l~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~   98 (257)
T 3f4k_A           26 QGPGSPEATRKAVSFINEL------TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFI-EIFNENAVKANCADRV   98 (257)
T ss_dssp             SSSCCHHHHHHHHTTSCCC------CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHH-HHHHHHHHHTTCTTTE
T ss_pred             cCCCCHHHHHHHHHHHhcC------CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHH-HHHHHHHHHcCCCCce
Confidence            4566666666665554321      35679999999999999999887655999999999999 9999999999998889


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      +++++|+.+
T Consensus        99 ~~~~~d~~~  107 (257)
T 3f4k_A           99 KGITGSMDN  107 (257)
T ss_dssp             EEEECCTTS
T ss_pred             EEEECChhh
Confidence            999999854

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.07  E-value=6.9e-10  Score=93.74  Aligned_cols=64  Identities=17%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.+++|++.+++.++++++++|+.+.
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFA-KLAWENIKWAGFDDRVTIKLKDIYEG  157 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHH-HHHHHHHHHcCCCCceEEEECchhhc
Confidence            46789999999999999999876 4 57999999999999 99999999999987899999998764

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.06  E-value=1.2e-09  Score=90.53  Aligned_cols=67  Identities=15%  Similarity=0.049  Sum_probs=60.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++.. + ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+..+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  126 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA-DIARSNIERANLNDRVEVRTGLALDSLQQI  126 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            5679999999999999998875 2 35899999999999 999999999999888999999999887654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.06  E-value=8.4e-10  Score=93.30  Aligned_cols=89  Identities=17%  Similarity=0.010  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      .+++..+.+.+.+++.+..... .....+.+|||+|||+|.+++.++. ....+|++||+++.++ +.+++|++.+++. 
T Consensus        44 ~~~~~~~~~~~~~~d~l~~~~~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-  120 (240)
T 1xdz_A           44 SITEKKEVYLKHFYDSITAAFY-VDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLE-  120 (240)
T ss_dssp             SCCSHHHHHHHTHHHHHGGGGT-SCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCS-
T ss_pred             ccCCHHHHHHHHHHHHHhHHHh-cccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-
Confidence            3455566666666665532100 0002567999999999999999885 3346899999999999 9999999999986 


Q ss_pred             cEEEEEccHHHHH
Q 027179          207 VSSIHTVRVETFL  219 (227)
Q Consensus       207 ~v~~i~gDa~~~L  219 (227)
                      +++++++|+.++.
T Consensus       121 ~v~~~~~d~~~~~  133 (240)
T 1xdz_A          121 NTTFCHDRAETFG  133 (240)
T ss_dssp             SEEEEESCHHHHT
T ss_pred             CEEEEeccHHHhc
Confidence            4999999998753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.06  E-value=2.7e-10  Score=92.47  Aligned_cols=64  Identities=11%  Similarity=0.019  Sum_probs=57.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++..  +..+|++||+++.++ +.+++|++.+++.++++++++|+.+.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~   86 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAI-ANTTKKLTDLNLIDRVTLIKDGHQNM   86 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHH-HHHHHHHHHTTCGGGEEEECSCGGGG
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHH
Confidence            36789999999999999998876  346899999999999 99999999999877899999998664

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.05  E-value=5.1e-10  Score=96.66  Aligned_cols=63  Identities=24%  Similarity=0.183  Sum_probs=56.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ++.+|||+|||+|.+++.++.. +..+|++||+++.++ +.+++|++.+++.+ ++++++|+.++.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~l~~-v~~~~~d~~~~~  143 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKV-AFVERAIEVLGLKG-ARALWGRAEVLA  143 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSS-EEEEECCHHHHT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCCc-eEEEECcHHHhh
Confidence            5679999999999999998865 556899999999999 99999999999974 999999998764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.05  E-value=4e-10  Score=102.77  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=58.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++..|+.+|++||++ .++ +.+++|++.+++.++++++++|+.++
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~  124 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMA-DHARALVKANNLDHIVEVIEGSVEDI  124 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTH-HHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHH-HHHHHHHHHcCCCCeEEEEECchhhc
Confidence            4678999999999999999999998899999999 898 99999999999988899999998763

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.04  E-value=1.2e-09  Score=95.14  Aligned_cols=63  Identities=6%  Similarity=-0.000  Sum_probs=55.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G---a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||||||||.+++.++...   ..+|++||+|+.++ +.|+++++..+..++++++++|+.+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml-~~A~~~~~~~~~~~~v~~~~~D~~~  134 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRD  134 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHHHHHhhccCceEEEeeccccc
Confidence            467899999999999999988752   23899999999999 9999999998888889999999865

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.04  E-value=4.3e-10  Score=103.09  Aligned_cols=93  Identities=16%  Similarity=0.125  Sum_probs=72.9

Q ss_pred             CeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 027179          118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       118 Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar  196 (227)
                      +..+...+|.+.....+.....+++++..       ..+.+|||+|||+|.+++.++..+ ..+|++||+|+.++ +.++
T Consensus       192 ~~~~~~~pg~Fs~~~~d~~~~~ll~~l~~-------~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al-~~Ar  263 (375)
T 4dcm_A          192 DWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSR  263 (375)
T ss_dssp             TEEEEECTTCTTCSSCCHHHHHHHHTCCC-------SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHH-HHHH
T ss_pred             ceEEEeCCCcccCCcccHHHHHHHHhCcc-------cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHH-HHHH
Confidence            45566677776665666555555555543       345799999999999999999874 56899999999999 9999


Q ss_pred             HHHHHhCCCC--cEEEEEccHHHH
Q 027179          197 PNLEWTGFLD--VSSIHTVRVETF  218 (227)
Q Consensus       197 ~N~~~ngl~~--~v~~i~gDa~~~  218 (227)
                      +|++.|++.+  +++++.+|+.+.
T Consensus       264 ~n~~~ngl~~~~~v~~~~~D~~~~  287 (375)
T 4dcm_A          264 LNVETNMPEALDRCEFMINNALSG  287 (375)
T ss_dssp             HHHHHHCGGGGGGEEEEECSTTTT
T ss_pred             HHHHHcCCCcCceEEEEechhhcc
Confidence            9999999764  578899998764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.03  E-value=1.3e-09  Score=92.10  Aligned_cols=65  Identities=15%  Similarity=0.064  Sum_probs=58.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ++.+|||+|||+|.+++.++... ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+.
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMI-QYAKQNLATYHFENQVRIIEGNALEQFE  136 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHH
Confidence            56799999999999999988742 46899999999999 9999999999998789999999988766

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.03  E-value=3.7e-10  Score=106.91  Aligned_cols=80  Identities=15%  Similarity=0.093  Sum_probs=67.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      +++.++.+.++++..+..       .++.+|||+|||+|.+++.++..|+.+|++||+++ ++ +.+++|++.+++.+++
T Consensus       139 d~~~t~~~~~~il~~l~~-------~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l-~~A~~~~~~~gl~~~v  209 (480)
T 3b3j_A          139 DYVRTGTYQRAILQNHTD-------FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRI  209 (480)
T ss_dssp             HHHHHHHHHHHHHHTGGG-------TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HH-HHHHHHHHHTTCTTTE
T ss_pred             ChHhHHHHHHHHHHhhhh-------cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HH-HHHHHHHHHcCCCCcE
Confidence            455566666666665543       36789999999999999999888888999999998 88 9999999999998889


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      +++++|+.+
T Consensus       210 ~~~~~d~~~  218 (480)
T 3b3j_A          210 VVIPGKVEE  218 (480)
T ss_dssp             EEEESCTTT
T ss_pred             EEEECchhh
Confidence            999999876

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.02  E-value=6.8e-10  Score=101.09  Aligned_cols=80  Identities=20%  Similarity=0.144  Sum_probs=67.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      -|..+.+...++... .       .++.+|||+|||||.++++++..+. .+|+++|+|+.++ +.+++|++.+|+.+++
T Consensus       200 a~l~~~la~~l~~~~-~-------~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l-~~A~~n~~~~gl~~~i  270 (373)
T 3tm4_A          200 AHLKASIANAMIELA-E-------LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHL-IGAEMNALAAGVLDKI  270 (373)
T ss_dssp             TCCCHHHHHHHHHHH-T-------CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHH-HHHHHHHHHTTCGGGC
T ss_pred             CCccHHHHHHHHHhh-c-------CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHHHcCCCCce
Confidence            345667777776655 3       3678999999999999999998765 3799999999999 9999999999997789


Q ss_pred             EEEEccHHHH
Q 027179          209 SIHTVRVETF  218 (227)
Q Consensus       209 ~~i~gDa~~~  218 (227)
                      +++++|+.+.
T Consensus       271 ~~~~~D~~~~  280 (373)
T 3tm4_A          271 KFIQGDATQL  280 (373)
T ss_dssp             EEEECCGGGG
T ss_pred             EEEECChhhC
Confidence            9999999874

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.02  E-value=7.2e-10  Score=94.39  Aligned_cols=82  Identities=12%  Similarity=0.085  Sum_probs=66.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      .+|........++..+..      ..++.+|||+|||+|.+++.++..+..+|++||+++.++ +.+++|++.+++.+++
T Consensus        26 ~~~~~~~~~~~~l~~l~~------~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v   98 (267)
T 3kkz_A           26 QGPGSPEVTLKALSFIDN------LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRV   98 (267)
T ss_dssp             SSSCCHHHHHHHHTTCCC------CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHH-HHHHHHHHHTTCTTTE
T ss_pred             cCCCCHHHHHHHHHhccc------CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHHHHHHcCCCcCc
Confidence            445555555555544431      146789999999999999999888666999999999999 9999999999998889


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      +++++|+.+
T Consensus        99 ~~~~~d~~~  107 (267)
T 3kkz_A           99 TGIVGSMDD  107 (267)
T ss_dssp             EEEECCTTS
T ss_pred             EEEEcChhh
Confidence            999999865

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.02  E-value=2e-09  Score=96.59  Aligned_cols=107  Identities=15%  Similarity=0.122  Sum_probs=76.4

Q ss_pred             eEEEEecccCCeeecCCCCC-CCCCCHHHHHHHHHHH-HHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEE
Q 027179          108 LLQVLGGKARRKKLLSPKGM-DVRPMMEVVKGAAFDI-LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFV  184 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~-~~RPtte~v~ealf~~-L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aV  184 (227)
                      .+.++...+.|+.|.+.... .+++..-...+.+... +...      ..+.+|||+|||+|.+++++++. +..+|++|
T Consensus        73 ~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v  146 (321)
T 2pt6_A           73 NVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVS------KEPKNVLVVGGGDGGIIRELCKYKSVENIDIC  146 (321)
T ss_dssp             EEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEE
T ss_pred             eEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcC------CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEE
Confidence            45555566788888765432 4566522222222221 1111      25679999999999999999876 56799999


Q ss_pred             eCCHHHHHHHHHHHHHH--hCC-CCcEEEEEccHHHHHHH
Q 027179          185 EMDPWVVSNVLIPNLEW--TGF-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       185 Eis~~Al~~~ar~N~~~--ngl-~~~v~~i~gDa~~~L~~  221 (227)
                      |+|+.++ +.+++|+..  +++ ..+++++++|+.+++..
T Consensus       147 Dis~~~l-~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~  185 (321)
T 2pt6_A          147 EIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLEN  185 (321)
T ss_dssp             ESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH
T ss_pred             ECCHHHH-HHHHHHHHhhccccCCCcEEEEEccHHHHHhh
Confidence            9999999 999999876  344 35799999999998754

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.02  E-value=1.8e-09  Score=100.75  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=71.5

Q ss_pred             cCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 027179          116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL  195 (227)
Q Consensus       116 ~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a  195 (227)
                      +.|.++.++++.+.....+ ..+.+..++...      .++.+|||+|||+|.+++.++..+ .+|++||+++.++ +.+
T Consensus       258 ~~g~~f~~~~~~F~q~n~~-~~e~l~~~~~~~------~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai-~~A  328 (425)
T 2jjq_A          258 LDDVDYLIHPNSFFQTNSY-QAVNLVRKVSEL------VEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAI-EMA  328 (425)
T ss_dssp             ETTEEEEECTTSCCCSBHH-HHHHHHHHHHHH------CCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHH-HHH
T ss_pred             ECCEEEEEccccccccCHH-HHHHHHHHhhcc------CCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHH-HHH
Confidence            3588888887765544333 222333333211      367799999999999999988765 5899999999999 999


Q ss_pred             HHHHHHhCCCCcEEEEEccHHHHH
Q 027179          196 IPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       196 r~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ++|++.|++.  ++++++|+.+++
T Consensus       329 ~~n~~~ngl~--v~~~~~d~~~~~  350 (425)
T 2jjq_A          329 RRNVEINNVD--AEFEVASDREVS  350 (425)
T ss_dssp             HHHHHHHTCC--EEEEECCTTTCC
T ss_pred             HHHHHHcCCc--EEEEECChHHcC
Confidence            9999999985  999999998754

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.01  E-value=1.1e-09  Score=97.90  Aligned_cols=61  Identities=25%  Similarity=0.316  Sum_probs=56.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..|+.+|++||++ .++ +.+++|++.+++.++++++++|+.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~-~~a~~~~~~~~~~~~i~~~~~d~~~   98 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SII-EMAKELVELNGFSDKITLLRGKLED   98 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THH-HHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHH-HHHHHHHHHcCCCCCEEEEECchhh
Confidence            677999999999999999998888899999999 588 9999999999998889999999875

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.01  E-value=8.8e-10  Score=90.03  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      ..++...+.+.++..+....    ..++.+|||+|||+|.+++.++..|+.+|++||+|+.++ +.+++|+.      ++
T Consensus        29 ~~~~~~~~~~~l~~~~~~~~----~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~------~~   97 (200)
T 1ne2_A           29 QYPTDASTAAYFLIEIYNDG----NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCG------GV   97 (200)
T ss_dssp             -CCCCHHHHHHHHHHHHHHT----SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCT------TS
T ss_pred             ecCCCHHHHHHHHHHHHhcC----CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhcC------CC
Confidence            34455555555555543221    146789999999999999999888877899999999999 99999875      47


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      +++++|+.+
T Consensus        98 ~~~~~d~~~  106 (200)
T 1ne2_A           98 NFMVADVSE  106 (200)
T ss_dssp             EEEECCGGG
T ss_pred             EEEECcHHH
Confidence            888888765

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.01  E-value=1e-09  Score=98.82  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=56.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..|+.+|++||+++ ++ +.+++|++.+++.++++++++|+.+
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~-~~a~~~~~~~~~~~~i~~~~~d~~~  124 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-IL-YQAMDIIRLNKLEDTITLIKGKIEE  124 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HH-HHHHHHHHHcCCCCcEEEEEeeHHH
Confidence            46789999999999999999988888999999997 88 9999999999997789999999875

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.00  E-value=7.4e-10  Score=93.92  Aligned_cols=66  Identities=9%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERA  222 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~  222 (227)
                      +.+|||+|||+|..++.++.. + ..+|++||+++.++ +.+++|++.+++. ++++++++|+.+++..+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~  125 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQ-RQAKALFREAGYSPSRVRFLLSRPLDVMSRL  125 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHGGGS
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh
Confidence            349999999999999998873 2 46899999999999 9999999999997 78999999999987653

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.00  E-value=7.1e-10  Score=103.71  Aligned_cols=65  Identities=18%  Similarity=0.115  Sum_probs=58.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh--CCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n--gl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||||||+|.+++.++..+ .+|++||+|+.++ +.+++|++.+  |+ ++++++++|+.+++...
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l-~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~  159 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETA-VAARHNIPLLLNEG-KDVNILTGDFKEYLPLI  159 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHH-HHHHHHHHHHSCTT-CEEEEEESCGGGSHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHH-HHHHHhHHHhccCC-CcEEEEECcHHHhhhhc
Confidence            37899999999999999887765 5899999999999 9999999999  88 57999999999987653

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.00  E-value=4.4e-10  Score=103.42  Aligned_cols=81  Identities=17%  Similarity=0.189  Sum_probs=65.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC-------------------------------
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-------------------------------  178 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga-------------------------------  178 (227)
                      -|..+.++..++....-       .++..|||+|||||.|.|+++..++                               
T Consensus       177 Apl~e~lAa~ll~~~~~-------~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~  249 (385)
T 3ldu_A          177 APIRETLAAGLIYLTPW-------KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAF  249 (385)
T ss_dssp             CCCCHHHHHHHHHTSCC-------CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhCC-------CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHH
Confidence            34556666665543321       3567899999999999999987542                               


Q ss_pred             --------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          179 --------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       179 --------~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                              .+|+++|+|+.++ +.|++|++.+|+.++++++++|+.+.
T Consensus       250 ~~~~~~~~~~V~GvDid~~ai-~~Ar~Na~~~gl~~~i~~~~~D~~~l  296 (385)
T 3ldu_A          250 NKIDNESKFKIYGYDIDEESI-DIARENAEIAGVDEYIEFNVGDATQF  296 (385)
T ss_dssp             HHSCCSCCCCEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEECCGGGC
T ss_pred             HHhhccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChhhc
Confidence                    3699999999999 99999999999987899999998764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.00  E-value=7.6e-10  Score=99.29  Aligned_cols=82  Identities=17%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      +-|..+.+...++..+..       .++.+|||+|||||.++++++..+  ..+|+++|+|+.++ +.+++|++.+|+. 
T Consensus       184 ~a~l~~~la~~l~~~~~~-------~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i-~~a~~n~~~~g~~-  254 (354)
T 3tma_A          184 RGSLTPVLAQALLRLADA-------RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL-GLAREAALASGLS-  254 (354)
T ss_dssp             SCSCCHHHHHHHHHHTTC-------CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHH-HHHHHHHHHTTCT-
T ss_pred             CCCcCHHHHHHHHHHhCC-------CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHH-HHHHHHHHHcCCC-
Confidence            445667777776655432       356799999999999999998854  35899999999999 9999999999997 


Q ss_pred             cEEEEEccHHHHH
Q 027179          207 VSSIHTVRVETFL  219 (227)
Q Consensus       207 ~v~~i~gDa~~~L  219 (227)
                      +++++++|+.++.
T Consensus       255 ~i~~~~~D~~~~~  267 (354)
T 3tma_A          255 WIRFLRADARHLP  267 (354)
T ss_dssp             TCEEEECCGGGGG
T ss_pred             ceEEEeCChhhCc
Confidence            7999999998743

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.99  E-value=5.6e-10  Score=103.19  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=66.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC------------------------------
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC------------------------------  178 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga------------------------------  178 (227)
                      .-|..|.++.+++....-       .++..|||+|||||.|.|+++..++                              
T Consensus       182 ~Apl~e~lAa~ll~l~~~-------~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a  254 (393)
T 3k0b_A          182 SAPIKETMAAALVLLTSW-------HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEA  254 (393)
T ss_dssp             SCSCCHHHHHHHHHHSCC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhCC-------CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHH
Confidence            346667777776644332       3567899999999999999987543                              


Q ss_pred             ---------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          179 ---------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       179 ---------~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                               .+|+++|+|+.++ +.|++|++.+|+.++++++++|+.+.
T Consensus       255 ~~~~~~~~~~~V~GvDid~~al-~~Ar~Na~~~gl~~~I~~~~~D~~~~  302 (393)
T 3k0b_A          255 EDLANYDQPLNIIGGDIDARLI-EIAKQNAVEAGLGDLITFRQLQVADF  302 (393)
T ss_dssp             HHHCCTTCCCCEEEEESCHHHH-HHHHHHHHHTTCTTCSEEEECCGGGC
T ss_pred             HHhhcccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChHhC
Confidence                     3599999999999 99999999999988899999998764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.99  E-value=1.6e-09  Score=91.62  Aligned_cols=65  Identities=11%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .+.+|||+|||+|.+++.++... ...|++||+++.++ +.+++|++.+++. +++++++|+.+.+..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l-~~a~~~~~~~~l~-nv~~~~~Da~~~l~~   99 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGV-GACLASAHEEGLS-NLRVMCHDAVEVLHK   99 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHTTCS-SEEEECSCHHHHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHH-HHHHHHHHHhCCC-cEEEEECCHHHHHHH
Confidence            56799999999999999998753 45899999999999 9999999999986 599999999988664

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.99  E-value=1.7e-09  Score=89.17  Aligned_cols=78  Identities=10%  Similarity=0.086  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCC---
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD---  206 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~---  206 (227)
                      |-.+...+.+.+.+..       .++.+|||+|||+|.++..++..+ ..+|++||+++.++ +.+++|+..+++.+   
T Consensus        12 ~~~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~   83 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQ-------SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSL-EIAQERLDRLRLPRNQW   83 (217)
T ss_dssp             CHHHHHHHHHHHHHHH-------TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHH-HHHHHHHTTCCCCHHHH
T ss_pred             CHHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHH-HHHHHHHHHhcCCcccC
Confidence            4445556667677765       367799999999999999998865 36899999999999 99999998888764   


Q ss_pred             -cEEEEEccHH
Q 027179          207 -VSSIHTVRVE  216 (227)
Q Consensus       207 -~v~~i~gDa~  216 (227)
                       +++++++|+.
T Consensus        84 ~~v~~~~~d~~   94 (217)
T 3jwh_A           84 ERLQLIQGALT   94 (217)
T ss_dssp             TTEEEEECCTT
T ss_pred             cceEEEeCCcc
Confidence             7999999974

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.99  E-value=2.3e-09  Score=88.86  Aligned_cols=68  Identities=15%  Similarity=0.010  Sum_probs=60.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      .++.+|||+|||+|.+++.++.. + ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+..+
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~  137 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDEL  137 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCCeEEEEEcCHHHHHHHH
Confidence            35679999999999999998874 2 46899999999999 999999999999778999999999887654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.99  E-value=8.2e-10  Score=101.97  Aligned_cols=81  Identities=22%  Similarity=0.325  Sum_probs=66.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC-------------------------------
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-------------------------------  178 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga-------------------------------  178 (227)
                      -|..|.+..+++....-       .++..++|+|||||.|.|+++..+.                               
T Consensus       176 Apl~e~LAaall~l~~~-------~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~  248 (384)
T 3ldg_A          176 APIKENMAAAIILLSNW-------FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEAD  248 (384)
T ss_dssp             CCCCHHHHHHHHHHTTC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCC-------CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHH
Confidence            35557777666544332       3567899999999999999987543                               


Q ss_pred             --------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          179 --------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       179 --------~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                              .+|+++|+|+.++ +.+++|++.+|+.++++++++|+.+.
T Consensus       249 ~~~~~~~~~~v~GvDid~~al-~~Ar~Na~~~gl~~~I~~~~~D~~~l  295 (384)
T 3ldg_A          249 EQADYDIQLDISGFDFDGRMV-EIARKNAREVGLEDVVKLKQMRLQDF  295 (384)
T ss_dssp             HHCCTTCCCCEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCGGGC
T ss_pred             HhhhccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChHHC
Confidence                    3599999999999 99999999999988899999998764

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.99  E-value=1.6e-09  Score=89.24  Aligned_cols=65  Identities=15%  Similarity=0.043  Sum_probs=58.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ++.+|||+|||+|..++.++.. + ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~  122 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNV-EHARRMLHDNGLIDRVELQVGDPLGIAA  122 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHSGGGGEEEEESCHHHHHT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCceEEEEEecHHHHhc
Confidence            4679999999999999998875 2 46899999999999 9999999999987789999999988764

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.99  E-value=9.7e-10  Score=99.12  Aligned_cols=63  Identities=22%  Similarity=0.226  Sum_probs=57.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++..|+.+|++||+++ ++ +.+++|++.+++.++++++++|+.+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l-~~a~~~~~~~~~~~~v~~~~~d~~~~  127 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-IS-DYAVKIVKANKLDHVVTIIKGKVEEV  127 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HH-HHHHHHHHHcCCCCcEEEEECcHHHc
Confidence            36789999999999999999998888999999995 88 99999999999988899999998763

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.99  E-value=3.2e-09  Score=93.89  Aligned_cols=111  Identities=11%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             cccceEEEEecccCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEE
Q 027179          104 TTHRLLQVLGGKARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEV  181 (227)
Q Consensus       104 ~~~~~L~ii~G~~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V  181 (227)
                      +....++++.+...|+.|.+.... ..++..-...+.+........     ..+.+|||+|||+|.+++++++. +..+|
T Consensus        43 s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~-----~~~~~VLdiG~G~G~~~~~l~~~~~~~~v  117 (296)
T 1inl_A           43 SDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLH-----PNPKKVLIIGGGDGGTLREVLKHDSVEKA  117 (296)
T ss_dssp             CSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHS-----SSCCEEEEEECTTCHHHHHHTTSTTCSEE
T ss_pred             CCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcC-----CCCCEEEEEcCCcCHHHHHHHhcCCCCEE
Confidence            334567788777778888776432 234432222333332211110     24579999999999999999886 56799


Q ss_pred             EEEeCCHHHHHHHHHHHHHH--hCC-CCcEEEEEccHHHHHH
Q 027179          182 HFVEMDPWVVSNVLIPNLEW--TGF-LDVSSIHTVRVETFLE  220 (227)
Q Consensus       182 ~aVEis~~Al~~~ar~N~~~--ngl-~~~v~~i~gDa~~~L~  220 (227)
                      ++||+|+.++ +.+++|+..  +++ .++++++++|+.+++.
T Consensus       118 ~~vDid~~~~-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~  158 (296)
T 1inl_A          118 ILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVR  158 (296)
T ss_dssp             EEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGG
T ss_pred             EEEECCHHHH-HHHHHHhHhhccccCCCceEEEECcHHHHHh
Confidence            9999999999 999999865  334 3579999999998764

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.98  E-value=3.6e-10  Score=96.95  Aligned_cols=67  Identities=12%  Similarity=-0.037  Sum_probs=60.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|..++.++.. + ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+..+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~~  128 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT-KHAHPYWREAKQEHKIKLRLGPALDTLHSL  128 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSC-CCSHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            5679999999999999998874 2 46899999999999 999999999999888999999999988765

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.98  E-value=1.2e-09  Score=100.45  Aligned_cols=91  Identities=25%  Similarity=0.199  Sum_probs=72.5

Q ss_pred             eecCCCCCC----CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 027179          120 KLLSPKGMD----VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL  195 (227)
Q Consensus       120 ~L~v~~g~~----~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a  195 (227)
                      .+...+|.+    ++++++.+.+.+.+++...     ..++.+|||+|||+|.+++.++..++ +|++||+|+.++ +.+
T Consensus       199 ~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~-----~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al-~~A  271 (381)
T 3dmg_A          199 TFHHLPGVFSAGKVDPASLLLLEALQERLGPE-----GVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASV-LSL  271 (381)
T ss_dssp             EEEECTTCTTTTSCCHHHHHHHHHHHHHHCTT-----TTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHH-HHH
T ss_pred             EEEeCCCceeCCCCCHHHHHHHHHHHHhhccc-----CCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHH-HHH
Confidence            444555543    5677788887776665311     13677999999999999999998875 899999999999 999


Q ss_pred             HHHHHHhCCCCcEEEEEccHHHHH
Q 027179          196 IPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       196 r~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ++|++.+++.  ++++++|+.+..
T Consensus       272 ~~n~~~~~~~--v~~~~~D~~~~~  293 (381)
T 3dmg_A          272 QKGLEANALK--AQALHSDVDEAL  293 (381)
T ss_dssp             HHHHHHTTCC--CEEEECSTTTTS
T ss_pred             HHHHHHcCCC--eEEEEcchhhcc
Confidence            9999999974  789999987654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.98  E-value=3.4e-09  Score=90.62  Aligned_cols=66  Identities=18%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ++.+|||+|||+|..++.++.. + ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+..
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~l~~  130 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA-QVARENLQLAGVDQRVTLREGPALQSLES  130 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHT
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHh
Confidence            5679999999999999998875 2 56899999999999 99999999999988899999999987764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.98  E-value=1.7e-09  Score=97.41  Aligned_cols=62  Identities=18%  Similarity=0.172  Sum_probs=56.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..|+.+|++||+++ .+ +.+++|++.+++.++++++++|+.+
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~~~  110 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEE  110 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcchhh
Confidence            46789999999999999999988888999999996 77 8999999999998789999999875

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.98  E-value=1.1e-09  Score=89.74  Aligned_cols=77  Identities=13%  Similarity=-0.086  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      .+.+...+...+..       .++.+|||+|||+|.+++.++..+ .+|+++|+++.++ +.+++|++.+++. ++++++
T Consensus        62 ~~~~~~~~~~~l~~-------~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~-~~a~~~~~~~~~~-~v~~~~  131 (210)
T 3lbf_A           62 QPYMVARMTELLEL-------TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQ-WQARRRLKNLDLH-NVSTRH  131 (210)
T ss_dssp             CHHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEE
T ss_pred             CHHHHHHHHHhcCC-------CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHH-HHHHHHHHHcCCC-ceEEEE
Confidence            34455555555543       467899999999999999998875 5899999999999 9999999999986 699999


Q ss_pred             ccHHHHH
Q 027179          213 VRVETFL  219 (227)
Q Consensus       213 gDa~~~L  219 (227)
                      +|+.+.+
T Consensus       132 ~d~~~~~  138 (210)
T 3lbf_A          132 GDGWQGW  138 (210)
T ss_dssp             SCGGGCC
T ss_pred             CCcccCC
Confidence            9997744

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.98  E-value=3.5e-10  Score=97.69  Aligned_cols=66  Identities=23%  Similarity=0.219  Sum_probs=58.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHH---hCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEW---TGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~---ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|||+|||+|.+++.++.+. ..+|++||+++.++ +.+++|++.   +++.++++++++|+.+++.
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~-~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMA-EFARRSLELPDNAAFSARIEVLEADVTLRAK  104 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHH-HHHHHHTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHhhhhCCCcceEEEEeCCHHHHhh
Confidence            356799999999999999998875 46899999999999 999999999   9988789999999987654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.97  E-value=1.8e-09  Score=101.78  Aligned_cols=82  Identities=15%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-------
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLE-------  200 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~-------  200 (227)
                      +-++.......+++.+..       .++.+|||||||+|.+.+.++. .|+.+|+|||+++.++ ++|++|++       
T Consensus       154 YGEt~~~~i~~il~~l~l-------~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~l-elAr~n~e~frkr~~  225 (438)
T 3uwp_A          154 YGETSFDLVAQMIDEIKM-------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMK  225 (438)
T ss_dssp             GGGTHHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHH-HHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHHHHHHH
Confidence            445566666677776643       4678999999999999999886 4777899999999999 99998763       


Q ss_pred             HhCCC-CcEEEEEccHHHH
Q 027179          201 WTGFL-DVSSIHTVRVETF  218 (227)
Q Consensus       201 ~ngl~-~~v~~i~gDa~~~  218 (227)
                      .+|+. ++++++++|+.+.
T Consensus       226 ~~Gl~~~rVefi~GD~~~l  244 (438)
T 3uwp_A          226 WYGKKHAEYTLERGDFLSE  244 (438)
T ss_dssp             HHTBCCCEEEEEECCTTSH
T ss_pred             HhCCCCCCeEEEECcccCC
Confidence            46763 6899999999763

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.97  E-value=1.9e-09  Score=92.68  Aligned_cols=67  Identities=7%  Similarity=0.016  Sum_probs=60.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      .+.+|||+|||+|..++.++.. + ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+..+
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  147 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEM  147 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHHHHH
Confidence            5679999999999999998874 2 36899999999999 999999999999778999999999988754

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.97  E-value=4.9e-09  Score=93.37  Aligned_cols=113  Identities=18%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             cccceEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEE
Q 027179          104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVH  182 (227)
Q Consensus       104 ~~~~~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~  182 (227)
                      +....++++.+...|+.|.+......-...+..-..++..+....    ...+.+|||+|||+|.+++++++. +..+|+
T Consensus        48 s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de~~y~e~l~~~~l~~----~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~  123 (304)
T 2o07_A           48 SRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCS----HPNPRKVLIIGGGDGGVLREVVKHPSVESVV  123 (304)
T ss_dssp             CSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTT----SSSCCEEEEEECTTSHHHHHHTTCTTCCEEE
T ss_pred             CCCcEEEEEEcCCCceEEEECCEEEeecccchHHHHHHHHHHHhh----CCCCCEEEEECCCchHHHHHHHHcCCCCEEE
Confidence            335567888888888888775321110111222222333322111    135679999999999999999876 457999


Q ss_pred             EEeCCHHHHHHHHHHHHHH--hCC-CCcEEEEEccHHHHHHH
Q 027179          183 FVEMDPWVVSNVLIPNLEW--TGF-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       183 aVEis~~Al~~~ar~N~~~--ngl-~~~v~~i~gDa~~~L~~  221 (227)
                      +||+|+.++ +.+++|+..  +++ .++++++++|+.+++..
T Consensus       124 ~vDid~~~i-~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~  164 (304)
T 2o07_A          124 QCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ  164 (304)
T ss_dssp             EEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT
T ss_pred             EEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHhh
Confidence            999999999 999999876  444 45799999999988764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.96  E-value=1.6e-09  Score=87.95  Aligned_cols=80  Identities=14%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      .+|..+.+.+.+++.+..        .+.+|||+|||+|.++..++.....+|+++|+++.++ +.+++|++.+++.+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~--------~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~   95 (219)
T 3dlc_A           25 FAPIYPIIAENIINRFGI--------TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMN-EIALKNIADANLNDRI   95 (219)
T ss_dssp             TTTHHHHHHHHHHHHHCC--------CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHH-HHHHHHHHHTTCTTTE
T ss_pred             hccccHHHHHHHHHhcCC--------CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHhccccCce
Confidence            445555566666655532        3349999999999999999886445899999999999 9999999999988789


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      +++++|+.+
T Consensus        96 ~~~~~d~~~  104 (219)
T 3dlc_A           96 QIVQGDVHN  104 (219)
T ss_dssp             EEEECBTTB
T ss_pred             EEEEcCHHH
Confidence            999999865

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.96  E-value=3.8e-09  Score=89.85  Aligned_cols=67  Identities=9%  Similarity=0.027  Sum_probs=60.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.+++|++..++.++++++++|+.+.+..+
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY-EIGLPFIRKAGVEHKINFIESDAMLALDNL  138 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            5679999999999999998874 2 46899999999999 999999999999878999999999988765

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.96  E-value=1.5e-09  Score=89.88  Aligned_cols=61  Identities=10%  Similarity=0.009  Sum_probs=55.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++... ..+|++||+++.++ +.+++|++.+++ ++++++++|+.+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l-~~a~~~~~~~~~-~~v~~~~~d~~~  102 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGV-PNIKLLWVDGSD  102 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCC-SSEEEEECCSSC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHH-HHHHHHHHHcCC-CCEEEEeCCHHH
Confidence            56799999999999999998763 46899999999999 999999999998 479999999876

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.96  E-value=9.5e-10  Score=93.46  Aligned_cols=64  Identities=17%  Similarity=0.087  Sum_probs=56.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHh--------CCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWT--------GFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~n--------gl~~~v~~i~gDa~~~L~  220 (227)
                      ++.+|||+|||+|.+++.++..+. .+|++||+++.++ +.+++|++.+        ++. +++++++|+.+++.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~  121 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT-NYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLP  121 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHH-HHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHH-HHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHH
Confidence            567999999999999999998764 4899999999999 9999999987        775 69999999987553

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.95  E-value=4.7e-09  Score=88.42  Aligned_cols=67  Identities=12%  Similarity=-0.011  Sum_probs=59.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++.. + ..+|++||+++.++ +.+++|++.+++.++++++++|+.+.+..+
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~  128 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT-NVARKYWKENGLENKIFLKLGSALETLQVL  128 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHHHHHH
Confidence            5679999999999999999876 2 46899999999999 999999999998778999999999877654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.95  E-value=4.2e-09  Score=92.22  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=76.5

Q ss_pred             cceEEEEecccCCeeecCCCCCCCCCCHH----HHHHHHHHHH-HhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCC
Q 027179          106 HRLLQVLGGKARRKKLLSPKGMDVRPMME----VVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCS  179 (227)
Q Consensus       106 ~~~L~ii~G~~~Gr~L~v~~g~~~RPtte----~v~ealf~~L-~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~  179 (227)
                      ...++++.+...|+.|.+. |.  +++++    ...+.+.... ...      ..+.+|||+|||+|.++.++++. +..
T Consensus        30 ~~~i~v~~~~~~g~~L~ld-g~--~q~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~~~~  100 (275)
T 1iy9_A           30 FQHLEMVETEEFGNMLFLD-GM--VMTSEKDEFVYHEMVAHVPLFTH------PNPEHVLVVGGGDGGVIREILKHPSVK  100 (275)
T ss_dssp             SCEEEEEEETTTEEEEEET-TE--EEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEESCTTCHHHHHHTTCTTCS
T ss_pred             CceEEEEEcCCCCEEEEEC-CE--EeecccchhHHHHHHHHHHHhhC------CCCCEEEEECCchHHHHHHHHhCCCCc
Confidence            4567777777777777665 32  22221    1334343321 111      35679999999999999999886 678


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEccHHHHHHH
Q 027179          180 EVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       180 ~V~aVEis~~Al~~~ar~N~~~n--gl-~~~v~~i~gDa~~~L~~  221 (227)
                      +|++||+|+.++ +.+++|+...  ++ .++++++++|+.+++..
T Consensus       101 ~v~~vEid~~~v-~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~  144 (275)
T 1iy9_A          101 KATLVDIDGKVI-EYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK  144 (275)
T ss_dssp             EEEEEESCHHHH-HHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT
T ss_pred             eEEEEECCHHHH-HHHHHHhHhhccccCCCceEEEECcHHHHHhh
Confidence            999999999999 9999998652  44 35899999999998764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.94  E-value=5.4e-09  Score=87.30  Aligned_cols=63  Identities=16%  Similarity=0.059  Sum_probs=56.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++.. ..+|+++|+++.++ +.+++|.+.+++.++++++++|+.+.
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~  152 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFY-KTAQKNLKKFNLGKNVKFFNVDFKDA  152 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHHHHTTCCTTEEEECSCTTTS
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHH-HHHHHHHHHcCCCCcEEEEEcChhhc
Confidence            36789999999999999999887 56899999999999 99999999999866899999998764

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.94  E-value=2.1e-09  Score=89.86  Aligned_cols=62  Identities=8%  Similarity=0.014  Sum_probs=55.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.+++.++.. ...+|++||+++.++ +.+++|++.+++. +++++++|+.+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l-~~a~~~~~~~~~~-nv~~~~~d~~~l  100 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQ-NVKLLNIDADTL  100 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCS-SEEEECCCGGGH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHH-HHHHHHHHHcCCC-CEEEEeCCHHHH
Confidence            5679999999999999998875 346899999999999 9999999999985 599999999874

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.94  E-value=3e-09  Score=87.60  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=63.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCC--
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLD--  206 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~--  206 (227)
                      .|..+...+.+.+.+..       .++.+|||+|||+|.++..++..+. .+|++||+|+.++ +.+++|+..+++.+  
T Consensus        11 ~~~~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~   82 (219)
T 3jwg_A           11 LNLNQQRLGTVVAVLKS-------VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVL-ERAKDRLKIDRLPEMQ   82 (219)
T ss_dssp             -CHHHHHHHHHHHHHHH-------TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHH-HHHHHHHTGGGSCHHH
T ss_pred             CcchHHHHHHHHHHHhh-------cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHhhcccccc
Confidence            34445555666666654       3677999999999999999987653 6899999999999 99999998888764  


Q ss_pred             --cEEEEEccHH
Q 027179          207 --VSSIHTVRVE  216 (227)
Q Consensus       207 --~v~~i~gDa~  216 (227)
                        +++++++|+.
T Consensus        83 ~~~v~~~~~d~~   94 (219)
T 3jwg_A           83 RKRISLFQSSLV   94 (219)
T ss_dssp             HTTEEEEECCSS
T ss_pred             CcceEEEeCccc
Confidence              7999999874

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.93  E-value=5e-09  Score=91.77  Aligned_cols=107  Identities=17%  Similarity=0.150  Sum_probs=74.3

Q ss_pred             cceEEEEecccCCeeecCCCCCCCCCCH--HHHHHHHHHH-HHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEE
Q 027179          106 HRLLQVLGGKARRKKLLSPKGMDVRPMM--EVVKGAAFDI-LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVH  182 (227)
Q Consensus       106 ~~~L~ii~G~~~Gr~L~v~~g~~~RPtt--e~v~ealf~~-L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~  182 (227)
                      ...++++.+...|+.|.+. |.....+.  ....+.+... +...      ..+.+|||+|||+|.++.++++.+..+|+
T Consensus        30 ~~~i~v~~~~~~g~~L~ld-g~~q~~~~d~~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~~~~v~  102 (281)
T 1mjf_A           30 YQKIEVYETEGFGRLLALD-GTVQLVTLGERSYHEPLVHPAMLAH------PKPKRVLVIGGGDGGTVREVLQHDVDEVI  102 (281)
T ss_dssp             SCEEEEEEESSSCEEEEET-TEEEEETTTTHHHHHHHHHHHHHHS------SCCCEEEEEECTTSHHHHHHTTSCCSEEE
T ss_pred             CccEEEEECCCccEEEEEC-CEeeeccccchHHHHHHHHHHHhhC------CCCCeEEEEcCCcCHHHHHHHhCCCCEEE
Confidence            4457777777777777665 32211111  1122333321 1111      35679999999999999999887777999


Q ss_pred             EEeCCHHHHHHHHHHHHHHh--CC--------CCcEEEEEccHHHHHHH
Q 027179          183 FVEMDPWVVSNVLIPNLEWT--GF--------LDVSSIHTVRVETFLER  221 (227)
Q Consensus       183 aVEis~~Al~~~ar~N~~~n--gl--------~~~v~~i~gDa~~~L~~  221 (227)
                      +||+|+.++ +.+++|+ ..  ++        ..+++++++|+.+++..
T Consensus       103 ~vDid~~~i-~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~  149 (281)
T 1mjf_A          103 MVEIDEDVI-MVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  149 (281)
T ss_dssp             EEESCHHHH-HHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             EEECCHHHH-HHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence            999999999 9999998 43  33        35799999999988764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.92  E-value=2.2e-09  Score=96.19  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      .+.+.+++++..       .++.+|||+|||+|.++++++.+. ..+|++||+|+.++ +.+++|++.++  ++++++++
T Consensus        13 vLl~e~l~~L~~-------~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al-~~A~~~~~~~g--~~v~~v~~   82 (301)
T 1m6y_A           13 VMVREVIEFLKP-------EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFS--DRVSLFKV   82 (301)
T ss_dssp             TTHHHHHHHHCC-------CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGT--TTEEEEEC
T ss_pred             HHHHHHHHhcCC-------CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEC
Confidence            344555666653       367899999999999999998863 46899999999999 99999999988  47999999


Q ss_pred             cHHHH
Q 027179          214 RVETF  218 (227)
Q Consensus       214 Da~~~  218 (227)
                      |+.+.
T Consensus        83 d~~~l   87 (301)
T 1m6y_A           83 SYREA   87 (301)
T ss_dssp             CGGGH
T ss_pred             CHHHH
Confidence            97664

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.91  E-value=1.4e-09  Score=87.73  Aligned_cols=71  Identities=13%  Similarity=0.049  Sum_probs=55.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      ..|||+++.+.+. +....        .++.+|||+|||||.+++.++..+  +|++||+|+.++ +.          .+
T Consensus         4 ~~P~~~~~~l~~~-l~~~~--------~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~-~~----------~~   61 (170)
T 3q87_B            4 YEPGEDTYTLMDA-LEREG--------LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRAL-ES----------HR   61 (170)
T ss_dssp             CCCCHHHHHHHHH-HHHHT--------CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHH-HT----------CS
T ss_pred             cCcCccHHHHHHH-HHhhc--------CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHH-hc----------cc
Confidence            3678888877766 33321        356799999999999999998887  899999999998 65          24


Q ss_pred             cEEEEEccHHHHH
Q 027179          207 VSSIHTVRVETFL  219 (227)
Q Consensus       207 ~v~~i~gDa~~~L  219 (227)
                      +++++++|+.+.+
T Consensus        62 ~~~~~~~d~~~~~   74 (170)
T 3q87_B           62 GGNLVRADLLCSI   74 (170)
T ss_dssp             SSCEEECSTTTTB
T ss_pred             CCeEEECChhhhc
Confidence            6789999987643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.91  E-value=3.2e-09  Score=90.87  Aligned_cols=59  Identities=12%  Similarity=0.032  Sum_probs=51.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      +..+|||||||+|.+++.++..  ++ +|+++|+|+.++ +.+++|+..+|+.+++++  +|..+
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~l-eiar~~~~~~g~~~~v~~--~d~~~  109 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEI-AFLSSIIGKLKTTIKYRF--LNKES  109 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHH-HHHHHHHHHSCCSSEEEE--ECCHH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHH-HHHHHHHHhcCCCccEEE--ecccc
Confidence            4679999999999999998765  55 999999999999 999999999999866777  45443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.91  E-value=5.2e-09  Score=87.54  Aligned_cols=67  Identities=13%  Similarity=0.065  Sum_probs=59.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|.+++.++... ..+|+++|+++.++ +.+++|++.+++.++++++++|+.+.+...
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  121 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRY-EEAHKHVKALGLESRIELLFGDALQLGEKL  121 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCGGGSHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhc
Confidence            56799999999999999988752 46899999999999 999999999999778999999998866544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.90  E-value=2.8e-10  Score=96.62  Aligned_cols=47  Identities=19%  Similarity=0.134  Sum_probs=41.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~---Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      ++.+|||+|||||.+++.++..   +..+|+++|+|+.++ +.+++|+..+
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l-~~A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPL-ELAAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHH-HHHHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHH-HHHHHHHHHh
Confidence            4679999999999999998875   235899999999999 9999999877

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.89  E-value=5.4e-09  Score=90.86  Aligned_cols=63  Identities=14%  Similarity=-0.012  Sum_probs=57.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++.. | .+|++||+|+.++ +.+++++..+++.++++++++|+.++
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQY-AHDKAMFDEVDSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHH-HHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECCHHHc
Confidence            46779999999999999999887 7 5899999999999 99999999999988899999998753

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.89  E-value=8.5e-09  Score=88.57  Aligned_cols=60  Identities=18%  Similarity=0.164  Sum_probs=54.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..|. +|++||+|+.++ +.+++|+..+++  +++++++|+.+
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~  178 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSI-AFLNETKEKENL--NISTALYDINA  178 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEecccc
Confidence            3678999999999999999998876 899999999999 999999999987  68999999865

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.88  E-value=9.4e-09  Score=86.85  Aligned_cols=67  Identities=12%  Similarity=0.060  Sum_probs=59.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ++.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.+++|++.+++.++++++++|+.+.+..+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l  140 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT-AIAKKYWQKAGVAEKISLRLGPALATLEQL  140 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            4679999999999999998874 2 35899999999999 999999999999878999999999887764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.88  E-value=4e-09  Score=92.21  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD  214 (227)
                      .+.+.+.+.+..       .++.+|||+|||+|.++..++.++ .+|++||+|+.++ +.+++|+..   .++++++++|
T Consensus        16 ~i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~-~~~~~~~~~---~~~v~~i~~D   83 (255)
T 3tqs_A           16 FVLQKIVSAIHP-------QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLV-AFLQKKYNQ---QKNITIYQND   83 (255)
T ss_dssp             HHHHHHHHHHCC-------CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHH-HHHHHHHTT---CTTEEEEESC
T ss_pred             HHHHHHHHhcCC-------CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHH-HHHHHHHhh---CCCcEEEEcc
Confidence            455566666643       367899999999999999998887 5899999999999 999999865   2479999999


Q ss_pred             HHHH
Q 027179          215 VETF  218 (227)
Q Consensus       215 a~~~  218 (227)
                      +.++
T Consensus        84 ~~~~   87 (255)
T 3tqs_A           84 ALQF   87 (255)
T ss_dssp             TTTC
T ss_pred             hHhC
Confidence            9764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.88  E-value=7.6e-09  Score=87.77  Aligned_cols=63  Identities=14%  Similarity=0.074  Sum_probs=56.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.....+|++||+++.++ +.+++++..+++.++++++++|+.+
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~  122 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQV-NQANARATAAGLANRVTFSYADAMD  122 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEECcccc
Confidence            36789999999999999998875345899999999999 9999999999988789999999865

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.86  E-value=4.5e-09  Score=92.07  Aligned_cols=62  Identities=16%  Similarity=0.016  Sum_probs=56.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.. | .+|++||+++.++ +.+++|++.+++.++++++++|+.+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  178 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFG-SRVEGVTLSAAQA-DFGNRRARELRIDDHVRSRVCNMLD  178 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcC-CEEEEEeCCHHHH-HHHHHHHHHcCCCCceEEEECChhc
Confidence            35789999999999999999887 6 4899999999999 9999999999998789999999865

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.85  E-value=1.2e-08  Score=88.62  Aligned_cols=65  Identities=15%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|||+|||+|.+++.++.  .+..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++..
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l-~~~~~~~~~~g~~-~v~~~~~D~~~~~~  148 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRT-KALKSNINRMGVL-NTIIINADMRKYKD  148 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCHHHHHH
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHH-HHHHHHHHHhCCC-cEEEEeCChHhcch
Confidence            3678999999999999998886  4557999999999999 9999999999986 69999999988654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.85  E-value=1.4e-08  Score=81.50  Aligned_cols=61  Identities=16%  Similarity=0.219  Sum_probs=54.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..|. +|+++|+++.++ +.+++|+..+++. +++++++|+.+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~   91 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSI-ANVERIKSIENLD-NLHTRVVDLNN   91 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEECCGGG
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHhCCCC-CcEEEEcchhh
Confidence            3567999999999999999988865 899999999999 9999999999885 59999999865

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.85  E-value=7.9e-09  Score=86.73  Aligned_cols=62  Identities=15%  Similarity=-0.009  Sum_probs=54.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ++.+|||+|||||.+++.++..+..+|++||+|+.++ +.+++|++.++  .+++++++|+.+.+
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~--~~v~~~~~d~~~~~  121 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQT--HKVIPLKGLWEDVA  121 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCS--SEEEEEESCHHHHG
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHH-HHHHHHHHhcC--CCeEEEecCHHHhh
Confidence            5679999999999999998776666899999999999 99999988777  36999999998763

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.85  E-value=2.5e-08  Score=90.32  Aligned_cols=108  Identities=17%  Similarity=0.058  Sum_probs=74.5

Q ss_pred             eEEEE-ec--ccCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEE
Q 027179          108 LLQVL-GG--KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVH  182 (227)
Q Consensus       108 ~L~ii-~G--~~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~  182 (227)
                      ..|+| .+  .+.|+.|.+.... .+++....-.+.+ ..+....    ...+.+|||+|||+|.+++++++. +..+|+
T Consensus        74 ~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L-~~l~l~~----~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~  148 (334)
T 1xj5_A           74 DYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMI-THLPLCS----IPNPKKVLVIGGGDGGVLREVARHASIEQID  148 (334)
T ss_dssp             SSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHH-HHHHHTT----SSCCCEEEEETCSSSHHHHHHTTCTTCCEEE
T ss_pred             CCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHH-HHHHHhh----CCCCCEEEEECCCccHHHHHHHHcCCCCEEE
Confidence            44444 34  4778888775543 4555422112222 2222110    124679999999999999999876 457999


Q ss_pred             EEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEccHHHHHHH
Q 027179          183 FVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       183 aVEis~~Al~~~ar~N~~~n--gl-~~~v~~i~gDa~~~L~~  221 (227)
                      +||+|+.++ +.+++|+...  ++ ..+++++++|+.+++..
T Consensus       149 ~VDis~~~l-~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~  189 (334)
T 1xj5_A          149 MCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN  189 (334)
T ss_dssp             EEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT
T ss_pred             EEECCHHHH-HHHHHHHHhhccccCCCcEEEEECCHHHHHHh
Confidence            999999999 9999998764  44 35799999999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.85  E-value=1.2e-08  Score=84.69  Aligned_cols=78  Identities=18%  Similarity=0.066  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC------CEEEEEeCCHHHHHHHHHHHHHHhCC----C
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC------SEVHFVEMDPWVVSNVLIPNLEWTGF----L  205 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga------~~V~aVEis~~Al~~~ar~N~~~ngl----~  205 (227)
                      +...+++.+....     .++.+|||+|||+|.+++.++....      .+|++||+++.++ +.+++|++.+++    .
T Consensus        66 ~~~~~~~~l~~~~-----~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~  139 (227)
T 2pbf_A           66 MHALSLKRLINVL-----KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV-NFSLENIKRDKPELLKI  139 (227)
T ss_dssp             HHHHHHHHHTTTS-----CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHH-HHHHHHHHHHCGGGGSS
T ss_pred             HHHHHHHHHHhhC-----CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHH-HHHHHHHHHcCcccccc
Confidence            3345555553211     3678999999999999999887532      4899999999999 999999999984    3


Q ss_pred             CcEEEEEccHHHHH
Q 027179          206 DVSSIHTVRVETFL  219 (227)
Q Consensus       206 ~~v~~i~gDa~~~L  219 (227)
                      ++++++++|+.+.+
T Consensus       140 ~~v~~~~~d~~~~~  153 (227)
T 2pbf_A          140 DNFKIIHKNIYQVN  153 (227)
T ss_dssp             TTEEEEECCGGGCC
T ss_pred             CCEEEEECChHhcc
Confidence            47999999998743

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.84  E-value=1.6e-09  Score=95.30  Aligned_cols=63  Identities=24%  Similarity=0.286  Sum_probs=53.0

Q ss_pred             CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH-------hC-CCCcEEEEEccHHHHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW-------TG-FLDVSSIHTVRVETFLER  221 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~-------ng-l~~~v~~i~gDa~~~L~~  221 (227)
                      .+|||+|||+|..+++++++|+ +|++||+++..+ +++++|++.       |+ +.++++++++|+.+++..
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~-~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~  160 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence            7999999999999999999887 699999999876 777777653       33 434799999999998764

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.84  E-value=3.2e-09  Score=88.26  Aligned_cols=80  Identities=16%  Similarity=0.090  Sum_probs=61.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      +|+.+.+...++.++....    ..++.+|||+|||+|.+++.++.. | ..+|++||+++.++ +.+++|++.+   .+
T Consensus        52 ~p~~~~~~~~i~~~l~~~~----~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~~~~~~~~~---~~  123 (227)
T 1g8a_A           52 NPNRSKLGAAIMNGLKNFP----IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEER---RN  123 (227)
T ss_dssp             CTTTCHHHHHHHTTCCCCC----CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSC---TT
T ss_pred             CCCchhHHHHHHhhHHhcC----CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHH-HHHHHHHhcc---CC
Confidence            5666666666644443210    135779999999999999999875 4 36899999999999 9999999766   46


Q ss_pred             EEEEEccHHH
Q 027179          208 SSIHTVRVET  217 (227)
Q Consensus       208 v~~i~gDa~~  217 (227)
                      ++++++|+.+
T Consensus       124 v~~~~~d~~~  133 (227)
T 1g8a_A          124 IVPILGDATK  133 (227)
T ss_dssp             EEEEECCTTC
T ss_pred             CEEEEccCCC
Confidence            9999999875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.84  E-value=5.4e-09  Score=91.88  Aligned_cols=75  Identities=17%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      +.+.+.+++.+..       .++.+|||+|||+|.++..++..+. +|++||+|+.++ +.+++|+..++..++++++++
T Consensus        14 ~~i~~~i~~~~~~-------~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~   84 (285)
T 1zq9_A           14 PLIINSIIDKAAL-------RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLV-AELHKRVQGTPVASKLQVLVG   84 (285)
T ss_dssp             HHHHHHHHHHTCC-------CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEES
T ss_pred             HHHHHHHHHhcCC-------CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEc
Confidence            3455556555532       3677999999999999999988764 899999999999 999999987776567999999


Q ss_pred             cHHH
Q 027179          214 RVET  217 (227)
Q Consensus       214 Da~~  217 (227)
                      |+.+
T Consensus        85 D~~~   88 (285)
T 1zq9_A           85 DVLK   88 (285)
T ss_dssp             CTTT
T ss_pred             ceec
Confidence            9865

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.83  E-value=1.2e-08  Score=92.54  Aligned_cols=82  Identities=13%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      .++.+.+...+...... .    ..++.+|||+| |+|.++++++..+. .+|++||+|+.++ +.+++|++.+|+. ++
T Consensus       152 ~~~~~~~~~~~l~~~~~-~----~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l-~~a~~~~~~~g~~-~v  223 (373)
T 2qm3_A          152 YVTPETTVARVILMHTR-G----DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLT-KFIEKAANEIGYE-DI  223 (373)
T ss_dssp             CBCHHHHHHHHHHHHHT-T----CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHH-HHHHHHHHHHTCC-CE
T ss_pred             ecCHHHHHHHHHHHhhc-C----CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CE
Confidence            45666555444332221 1    13578999999 99999999988775 7999999999999 9999999999987 79


Q ss_pred             EEEEccHHHHH
Q 027179          209 SIHTVRVETFL  219 (227)
Q Consensus       209 ~~i~gDa~~~L  219 (227)
                      +++++|+.+.+
T Consensus       224 ~~~~~D~~~~l  234 (373)
T 2qm3_A          224 EIFTFDLRKPL  234 (373)
T ss_dssp             EEECCCTTSCC
T ss_pred             EEEEChhhhhc
Confidence            99999998743

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.83  E-value=5e-09  Score=92.81  Aligned_cols=73  Identities=10%  Similarity=0.151  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD  214 (227)
                      .+.+.+.+.+..       .++.+|||+|||+|.++..++.++ .+|++||+|+.++ +.+++|++.+++ ++++++++|
T Consensus        29 ~i~~~i~~~~~~-------~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~-~~a~~~~~~~~~-~~v~~~~~D   98 (299)
T 2h1r_A           29 GILDKIIYAAKI-------KSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMI-SEVKKRCLYEGY-NNLEVYEGD   98 (299)
T ss_dssp             HHHHHHHHHHCC-------CTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHH-HHHHHHHHHTTC-CCEEC----
T ss_pred             HHHHHHHHhcCC-------CCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHH-HHHHHHHHHcCC-CceEEEECc
Confidence            455556565543       367799999999999999988775 5899999999999 999999998887 469999999


Q ss_pred             HHH
Q 027179          215 VET  217 (227)
Q Consensus       215 a~~  217 (227)
                      +.+
T Consensus        99 ~~~  101 (299)
T 2h1r_A           99 AIK  101 (299)
T ss_dssp             CCS
T ss_pred             hhh
Confidence            764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.82  E-value=2.1e-08  Score=82.28  Aligned_cols=59  Identities=17%  Similarity=0.126  Sum_probs=52.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++..+. +|++||+++.++ +.+++|++.++  .+++++++|+.+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~--~~~~~~~~d~~~   96 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMI-RKAREYAKSRE--SNVEFIVGDARK   96 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT--CCCEEEECCTTS
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcC--CCceEEECchhc
Confidence            467999999999999999888876 899999999999 99999998887  368999999765

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.82  E-value=3.9e-09  Score=94.57  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=73.0

Q ss_pred             CCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHH
Q 027179          117 RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVL  195 (227)
Q Consensus       117 ~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~a  195 (227)
                      .+..+...++.+.++..+...+.+++.+..       ..+.+|||+|||+|.+++.++..+. .+|++||+|+.++ +.+
T Consensus       165 ~~~~~~~~~gvf~~~~~d~~~~~ll~~l~~-------~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l-~~a  236 (343)
T 2pjd_A          165 DGLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAV-EAS  236 (343)
T ss_dssp             TTEEEEECTTCTTSSSCCHHHHHHHHHSCT-------TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHH-HHH
T ss_pred             cceEEEecCCccCCCCCcHHHHHHHHhcCc-------CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHH-HHH
Confidence            345566677777788777777777776643       2456899999999999999988764 4899999999999 999


Q ss_pred             HHHHHHhCCCCcEEEEEccHHHH
Q 027179          196 IPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       196 r~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++|++.+++.  ++++.+|+.+.
T Consensus       237 ~~~~~~~~~~--~~~~~~d~~~~  257 (343)
T 2pjd_A          237 RATLAANGVE--GEVFASNVFSE  257 (343)
T ss_dssp             HHHHHHTTCC--CEEEECSTTTT
T ss_pred             HHHHHHhCCC--CEEEEcccccc
Confidence            9999999874  56788887653

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.82  E-value=1.6e-08  Score=95.11  Aligned_cols=77  Identities=14%  Similarity=0.160  Sum_probs=61.7

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHH-------HHHHHHhC
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVL-------IPNLEWTG  203 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~a-------r~N~~~ng  203 (227)
                      +...++..+++.+..       .++.+|||+|||+|.+++.++.. |+.+|++||+++.++ +.|       ++|++.+|
T Consensus       226 t~p~~v~~ml~~l~l-------~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l-~~A~~Ml~~ar~~~~~~G  297 (433)
T 1u2z_A          226 LLPNFLSDVYQQCQL-------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEELKKRCKLYG  297 (433)
T ss_dssp             BCHHHHHHHHHHTTC-------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHhcCC-------CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHhHHHHHHHHHHcC
Confidence            334455555555532       46789999999999999999875 777899999999998 899       99999999


Q ss_pred             CC-CcEEEEEccHH
Q 027179          204 FL-DVSSIHTVRVE  216 (227)
Q Consensus       204 l~-~~v~~i~gDa~  216 (227)
                      +. ++++++++|.+
T Consensus       298 l~~~nV~~i~gD~~  311 (433)
T 1u2z_A          298 MRLNNVEFSLKKSF  311 (433)
T ss_dssp             BCCCCEEEEESSCS
T ss_pred             CCCCceEEEEcCcc
Confidence            53 57999998654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.82  E-value=2e-08  Score=86.17  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=55.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .+.+|||+|||+|.++..++..|. +|++||+++.++ +.++++++.+++.++++++++|+.+..
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~  130 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMI-DRAKQAAEAKGVSDNMQFIHCAAQDVA  130 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHC-CCGGGEEEEESCGGGTG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCcceEEEEcCHHHhh
Confidence            467999999999999999988865 899999999999 999999999998778999999987643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.80  E-value=2.1e-08  Score=86.98  Aligned_cols=62  Identities=8%  Similarity=0.064  Sum_probs=54.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~n-gl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++.  .+..+|++||+++.++ +.+++|++.+ +...+++++++|+.+
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMI-KTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHH-HHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHhccCCCCceEEEEcCHHh
Confidence            678999999999999999985  3557999999999999 9999999987 445689999999875

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.80  E-value=1.4e-08  Score=84.85  Aligned_cols=75  Identities=12%  Similarity=0.024  Sum_probs=60.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      ..++|.++.+.+.++..+.        .++.+|||+|||+|.+++.++..++ +|+++|+++.++ +.+++|     . .
T Consensus        28 ~~~~~~~~~l~~~~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~-----~-~   91 (226)
T 3m33_A           28 VLSGPDPELTFDLWLSRLL--------TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELL-KLARAN-----A-P   91 (226)
T ss_dssp             EESSSCTTHHHHHHHHHHC--------CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHH-HHHHHH-----C-T
T ss_pred             ccCCCCHHHHHHHHHHhcC--------CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHh-----C-C
Confidence            3577888877777655432        3568999999999999999988865 899999999999 999988     2 3


Q ss_pred             cEEEEEccHHH
Q 027179          207 VSSIHTVRVET  217 (227)
Q Consensus       207 ~v~~i~gDa~~  217 (227)
                      +++++++|+.+
T Consensus        92 ~~~~~~~d~~~  102 (226)
T 3m33_A           92 HADVYEWNGKG  102 (226)
T ss_dssp             TSEEEECCSCS
T ss_pred             CceEEEcchhh
Confidence            58899999854

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.80  E-value=1.7e-08  Score=84.86  Aligned_cols=75  Identities=16%  Similarity=0.056  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      .+.+...+++.+..       .++.+|||+|||+|.+++.++..+..+|++||+++.++ +.+++|++.+++.+ +++++
T Consensus        76 ~~~~~~~~~~~l~~-------~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~-v~~~~  146 (235)
T 1jg1_A           76 APHMVAIMLEIANL-------KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV-EFAKRNLERAGVKN-VHVIL  146 (235)
T ss_dssp             CHHHHHHHHHHHTC-------CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEE
T ss_pred             cHHHHHHHHHhcCC-------CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-cEEEE
Confidence            44455566666643       36779999999999999998876426899999999999 99999999999864 99999


Q ss_pred             ccHH
Q 027179          213 VRVE  216 (227)
Q Consensus       213 gDa~  216 (227)
                      +|+.
T Consensus       147 ~d~~  150 (235)
T 1jg1_A          147 GDGS  150 (235)
T ss_dssp             SCGG
T ss_pred             CCcc
Confidence            9974

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.80  E-value=4.6e-09  Score=87.06  Aligned_cols=62  Identities=13%  Similarity=-0.091  Sum_probs=51.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC-----------CCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-----------FLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng-----------l~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|..++.++.+|. +|++||+|+.++ +.++++.....           ...+++++++|+.+.
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHH-HHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            578999999999999999998886 899999999999 99988764310           023689999998764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.80  E-value=6.4e-09  Score=87.31  Aligned_cols=59  Identities=14%  Similarity=0.050  Sum_probs=52.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++.. |..+|++||+++.++ +.+++|++.+   ++++++++|+.+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~-~~a~~~~~~~---~~v~~~~~d~~~  133 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAER---ENIIPILGDANK  133 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTC---TTEEEEECCTTC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHH-HHHHHHhhcC---CCeEEEECCCCC
Confidence            5679999999999999999876 657999999999999 9999998765   469999999865

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.80  E-value=2.9e-08  Score=83.33  Aligned_cols=63  Identities=17%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~n-gl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.+++|++.+ + .++++++++|+.+.
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~g-~~~v~~~~~d~~~~  160 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL-AQAERNVRAFWQ-VENVRFHLGKLEEA  160 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCC-CCCEEEEESCGGGC
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcC-CCCEEEEECchhhc
Confidence            46789999999999999999876 4 46899999999999 9999999998 8 45799999998764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.80  E-value=1.6e-08  Score=83.88  Aligned_cols=72  Identities=14%  Similarity=-0.013  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      +.+...+.+.+..       .++.+|||+|||+|.++..++..+ .+|++||+++.++ +.+++|+..++   +++++++
T Consensus        56 ~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~-~~a~~~~~~~~---~v~~~~~  123 (231)
T 1vbf_A           56 LNLGIFMLDELDL-------HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMY-NYASKLLSYYN---NIKLILG  123 (231)
T ss_dssp             HHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHTTCS---SEEEEES
T ss_pred             HHHHHHHHHhcCC-------CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHH-HHHHHHHhhcC---CeEEEEC
Confidence            3455555555532       367799999999999999998877 6899999999999 99999998776   6999999


Q ss_pred             cHHH
Q 027179          214 RVET  217 (227)
Q Consensus       214 Da~~  217 (227)
                      |+.+
T Consensus       124 d~~~  127 (231)
T 1vbf_A          124 DGTL  127 (231)
T ss_dssp             CGGG
T ss_pred             Cccc
Confidence            9876

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.79  E-value=6.8e-09  Score=89.19  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.++..++.++ .+|++||+|+.++ +.+++|+...   ++++++++|+.+.
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~-~~a~~~~~~~---~~v~~~~~D~~~~   88 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLC-KTTENKLVDH---DNFQVLNKDILQF   88 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHH-HHHHHHTTTC---CSEEEECCCGGGC
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHH-HHHHHhhccC---CCeEEEEChHHhC
Confidence            357799999999999999999887 5899999999999 9999988642   4799999998763

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.79  E-value=6.1e-09  Score=90.43  Aligned_cols=71  Identities=15%  Similarity=0.110  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      +.+.+.+++.+..       .++.+|||+|||+|.++..++..|+.+|++||+|+.++ +.+++|    . .++++++++
T Consensus        17 ~~i~~~iv~~~~~-------~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~-~~~~~~----~-~~~v~~i~~   83 (249)
T 3ftd_A           17 EGVLKKIAEELNI-------EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMV-ENLKSI----G-DERLEVINE   83 (249)
T ss_dssp             HHHHHHHHHHTTC-------CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHH-HHHTTS----C-CTTEEEECS
T ss_pred             HHHHHHHHHhcCC-------CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHH-HHHHhc----c-CCCeEEEEc
Confidence            4455666666543       36789999999999999999988777999999999999 999887    2 246999999


Q ss_pred             cHHH
Q 027179          214 RVET  217 (227)
Q Consensus       214 Da~~  217 (227)
                      |+.+
T Consensus        84 D~~~   87 (249)
T 3ftd_A           84 DASK   87 (249)
T ss_dssp             CTTT
T ss_pred             chhh
Confidence            9875

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.79  E-value=4.5e-08  Score=82.03  Aligned_cols=59  Identities=24%  Similarity=0.191  Sum_probs=52.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..|. +|++||+|+.++ +.+++|+..++.  +++++++|+.+
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~--~v~~~~~d~~~   99 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVLE   99 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECChhh
Confidence            567999999999999999988875 899999999999 999999998876  58899998865

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.78  E-value=2.6e-08  Score=85.50  Aligned_cols=81  Identities=20%  Similarity=0.098  Sum_probs=62.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC---C
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL---D  206 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~---~  206 (227)
                      +..++.....+...+..       .++.+|||+|||+|.+++.++..|+ +|++||+|+.++ +.+++|+...+..   .
T Consensus        39 ~~~~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~  109 (293)
T 3thr_A           39 RSRTAEYKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKML-KYALKERWNRRKEPAFD  109 (293)
T ss_dssp             SCBCHHHHHHHHHHHHH-------TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTTSHHHH
T ss_pred             cchHHHHHHHHHHHhcc-------cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHhhhhcccccccc
Confidence            34456666777776664       3567999999999999999998886 899999999999 9999988554432   2


Q ss_pred             cEEEEEccHHHHH
Q 027179          207 VSSIHTVRVETFL  219 (227)
Q Consensus       207 ~v~~i~gDa~~~L  219 (227)
                      ++.++.+|+.+.-
T Consensus       110 ~~~~~~~d~~~~~  122 (293)
T 3thr_A          110 KWVIEEANWLTLD  122 (293)
T ss_dssp             TCEEEECCGGGHH
T ss_pred             eeeEeecChhhCc
Confidence            4678888876643

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.78  E-value=1.9e-08  Score=90.62  Aligned_cols=63  Identities=19%  Similarity=0.086  Sum_probs=53.6

Q ss_pred             CCCCeEEEeccCCCHHH-HHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVG-IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~is-I~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.++ +.++.....+|++||+|++++ +.|++|++..|+ ++++++++|+.++
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l-~~Ar~~~~~~gl-~~v~~v~gDa~~l  184 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIA-ELSRKVIEGLGV-DGVNVITGDETVI  184 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHH-HHHHHHHHHHTC-CSEEEEESCGGGG
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHH-HHHHHHHHhcCC-CCeEEEECchhhC
Confidence            47889999999999876 445553234899999999999 999999999999 7899999999873

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.78  E-value=2.7e-08  Score=81.61  Aligned_cols=76  Identities=13%  Similarity=-0.032  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-C-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-C-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i  211 (227)
                      +.+...+...+..       .++.+|||+|||+|.+++.++..+ . .+|+++|+++.++ +.+++|+..+++. +++++
T Consensus        63 ~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~-~v~~~  133 (215)
T 2yxe_A           63 IHMVGMMCELLDL-------KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA-EKAERTLRKLGYD-NVIVI  133 (215)
T ss_dssp             HHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEE
T ss_pred             HHHHHHHHHhhCC-------CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CeEEE
Confidence            3444555555532       467899999999999999988764 2 6899999999999 9999999999886 49999


Q ss_pred             EccHHHH
Q 027179          212 TVRVETF  218 (227)
Q Consensus       212 ~gDa~~~  218 (227)
                      ++|+.+.
T Consensus       134 ~~d~~~~  140 (215)
T 2yxe_A          134 VGDGTLG  140 (215)
T ss_dssp             ESCGGGC
T ss_pred             ECCcccC
Confidence            9998653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.78  E-value=2.3e-08  Score=88.41  Aligned_cols=78  Identities=14%  Similarity=-0.026  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      .+.+...++..+..       .++.+|||+|||+|.+++.++..+.  .+|++||+++.++ +.+++|++.+++.+ +++
T Consensus        60 ~~~~~~~l~~~l~~-------~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~g~~~-v~~  130 (317)
T 1dl5_A           60 QPSLMALFMEWVGL-------DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIEN-VIF  130 (317)
T ss_dssp             CHHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCCS-EEE
T ss_pred             CHHHHHHHHHhcCC-------CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC-eEE
Confidence            34455555555543       4678999999999999999987643  5799999999999 99999999999875 999


Q ss_pred             EEccHHHHH
Q 027179          211 HTVRVETFL  219 (227)
Q Consensus       211 i~gDa~~~L  219 (227)
                      +++|+.+.+
T Consensus       131 ~~~d~~~~~  139 (317)
T 1dl5_A          131 VCGDGYYGV  139 (317)
T ss_dssp             EESCGGGCC
T ss_pred             EECChhhcc
Confidence            999987643

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.78  E-value=1.1e-08  Score=87.18  Aligned_cols=63  Identities=16%  Similarity=-0.050  Sum_probs=56.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..+..+|++||+++.++ +.+++|+...++.++++++++|+.+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  125 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYG  125 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCccEEEEECCccc
Confidence            36789999999999999998887777999999999999 9999999988876679999999865

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.77  E-value=1.5e-08  Score=83.01  Aligned_cols=62  Identities=13%  Similarity=-0.008  Sum_probs=54.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..+  ..+|++||+++.++ +.+++++..+++. +++++++|+.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~   99 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV-NYAWEKVNKLGLK-NVEVLKSEENK   99 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEECBTTB
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeccccc
Confidence            357799999999999999998764  35899999999999 9999999999986 69999999764

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.77  E-value=2.5e-08  Score=84.32  Aligned_cols=61  Identities=16%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++++.+++. +++++++|+.+
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~~-~v~~~~~d~~~   96 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDIL-KVARAFIEGNGHQ-QVEYVQGDAEQ   96 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCC-C
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHH-HHHHHHHHhcCCC-ceEEEEecHHh
Confidence            3678999999999999999888775 899999999999 9999999998876 69999999764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.77  E-value=2.2e-08  Score=85.89  Aligned_cols=62  Identities=15%  Similarity=0.033  Sum_probs=55.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++. .|+ +|++||+|+.++ +.+++++...++.++++++++|+.+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~  125 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGWEQ  125 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCCCCeEEEECChhh
Confidence            3567999999999999999884 465 899999999999 9999999998887789999999854

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.77  E-value=1.9e-08  Score=87.87  Aligned_cols=62  Identities=15%  Similarity=-0.039  Sum_probs=55.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.. |+ +|++||+++.++ +.+++++..+++.++++++++|+.+
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  151 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGWED  151 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECChHH
Confidence            35789999999999999999876 76 899999999999 9999999999987789999999764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.76  E-value=1e-08  Score=101.20  Aligned_cols=82  Identities=20%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC------------------------------
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC------------------------------  178 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga------------------------------  178 (227)
                      .-|..|.++.+++....-       .++..+||+|||||.|.|+++..++                              
T Consensus       171 ~apl~e~LAa~ll~~~~~-------~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~e  243 (703)
T 3v97_A          171 IAPIKETLAAAIVMRSGW-------QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAE  243 (703)
T ss_dssp             CCSSCHHHHHHHHHHTTC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhhCC-------CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHH
Confidence            446677777777654432       3567899999999999999986421                              


Q ss_pred             -------------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          179 -------------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       179 -------------~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                                   .+|+++|+|+.++ +.|++|++.+|+.+.+++.++|+.+.
T Consensus       244 a~~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~agv~~~i~~~~~D~~~~  295 (703)
T 3v97_A          244 AQTRARKGLAEYSSHFYGSDSDARVI-QRARTNARLAGIGELITFEVKDVAQL  295 (703)
T ss_dssp             HHHHHHHHHHHCCCCEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEECCGGGC
T ss_pred             HHHHhhhccccCCccEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChhhC
Confidence                         3699999999999 99999999999988899999999763

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.76  E-value=1e-08  Score=90.64  Aligned_cols=70  Identities=14%  Similarity=0.102  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD  214 (227)
                      .+.+.+.+.+..       .++ +|||+|||+|.++..++..+ .+|++||+|++++ +.+++|+.    .++++++++|
T Consensus        34 ~i~~~Iv~~~~~-------~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~-~~l~~~~~----~~~v~vi~~D   99 (271)
T 3fut_A           34 AHLRRIVEAARP-------FTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLR-PVLEETLS----GLPVRLVFQD   99 (271)
T ss_dssp             HHHHHHHHHHCC-------CCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGH-HHHHHHTT----TSSEEEEESC
T ss_pred             HHHHHHHHhcCC-------CCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHH-HHHHHhcC----CCCEEEEECC
Confidence            455666666643       356 99999999999999999887 4799999999999 99999875    2479999999


Q ss_pred             HHHH
Q 027179          215 VETF  218 (227)
Q Consensus       215 a~~~  218 (227)
                      +.++
T Consensus       100 ~l~~  103 (271)
T 3fut_A          100 ALLY  103 (271)
T ss_dssp             GGGS
T ss_pred             hhhC
Confidence            9764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.76  E-value=1.9e-08  Score=85.50  Aligned_cols=64  Identities=14%  Similarity=-0.024  Sum_probs=55.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ..+.+|||+|||+|.++..++..+..+|++||+++.++ +.++++++..+.  +++++.+|+.+.+.
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~-~~a~~~~~~~~~--~~~~~~~~a~~~~~  122 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAP  122 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGG
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHH-HHHHHHHhhCCC--ceEEEeehHHhhcc
Confidence            36789999999999999998877656899999999999 999999988775  68899999987654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.75  E-value=3.4e-08  Score=85.06  Aligned_cols=62  Identities=16%  Similarity=0.164  Sum_probs=55.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.. |+ +|++||+++.++ +.++++++..++.++++++++|+.+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEEcCccc
Confidence            36789999999999999998876 65 899999999999 9999999999988789999999865

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.74  E-value=1.3e-08  Score=88.89  Aligned_cols=50  Identities=18%  Similarity=0.209  Sum_probs=40.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl  204 (227)
                      .++.+|||+|||+|.+++.++.. +..+|++||+|+.++ +.|++|++.++.
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i-~~A~~~~~~~~~   95 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI-HSARQNIRHYLS   95 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHH-HHHHHTC-----
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHhhhh
Confidence            36789999999999999999876 567999999999999 999999877653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.74  E-value=4.7e-08  Score=83.48  Aligned_cols=64  Identities=16%  Similarity=0.110  Sum_probs=55.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHh-C-CCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWT-G-FLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~n-g-l~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.+++|++.+ + +.++++++++|+.+.
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~g~~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDNWRLVVSDLADS  165 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence            46779999999999999998874 3 46899999999999 9999999988 5 445799999998763

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.73  E-value=2.4e-08  Score=95.63  Aligned_cols=64  Identities=20%  Similarity=0.216  Sum_probs=57.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      ++.+|||+|||+|.++..+|..|+ .|++||.++.++ +.|+..+..++.. ++++.++|+.+....
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i-~~a~~~a~~~~~~-~~~~~~~~~~~~~~~  129 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENI-NVCRALAEENPDF-AAEFRVGRIEEVIAA  129 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTSTTS-EEEEEECCHHHHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHH-HHHHHHHHhcCCC-ceEEEECCHHHHhhh
Confidence            567999999999999999999997 799999999999 9999999988754 599999999987654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.73  E-value=1.6e-08  Score=89.43  Aligned_cols=72  Identities=22%  Similarity=0.269  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCC---EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS---EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~---~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      +.+.+.+++.+..       .++.+|||+|||+|.++..++..+..   +|++||+|+.++ +.+++|.     .+++++
T Consensus        28 ~~i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l-~~a~~~~-----~~~v~~   94 (279)
T 3uzu_A           28 HGVIDAIVAAIRP-------ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLI-GRLEQRF-----GELLEL   94 (279)
T ss_dssp             HHHHHHHHHHHCC-------CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHH-HHHHHHH-----GGGEEE
T ss_pred             HHHHHHHHHhcCC-------CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHH-HHHHHhc-----CCCcEE
Confidence            3455666666643       36789999999999999999887542   299999999999 9999983     247999


Q ss_pred             EEccHHHH
Q 027179          211 HTVRVETF  218 (227)
Q Consensus       211 i~gDa~~~  218 (227)
                      +++|+.++
T Consensus        95 i~~D~~~~  102 (279)
T 3uzu_A           95 HAGDALTF  102 (279)
T ss_dssp             EESCGGGC
T ss_pred             EECChhcC
Confidence            99999763

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.72  E-value=4.3e-08  Score=82.38  Aligned_cols=61  Identities=18%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..+. +|+++|+++.++ +.+++|++.+++. +++++++|+.+
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~   80 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMV-EVASSFAQEKGVE-NVRFQQGTAES   80 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHHTCC-SEEEEECBTTB
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHH-HHHHHHHHHcCCC-CeEEEeccccc
Confidence            4678999999999999999988774 899999999999 9999999999886 69999999754

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.72  E-value=1.1e-08  Score=84.26  Aligned_cols=62  Identities=13%  Similarity=0.022  Sum_probs=49.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHH----HHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVL----IPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~a----r~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..+ ..+|++||+++.++ +.+    +++....++. +++++++|+.+
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l-~~~~~~a~~~~~~~~~~-~v~~~~~d~~~   92 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRM-EKISAKAAAKPAKGGLP-NLLYLWATAER   92 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGG-HHHHHHHTSCGGGTCCT-TEEEEECCSTT
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhhhhcCCC-ceEEEecchhh
Confidence            367899999999999999998864 46899999999976 543    4444456664 69999999865

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.71  E-value=4.4e-08  Score=86.88  Aligned_cols=64  Identities=14%  Similarity=0.027  Sum_probs=54.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHh-------CC---CCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWT-------GF---LDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~n-------gl---~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++.. |. .+|+++|+++.++ +.+++|++..       ++   .++++++++|+.+.
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~  179 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  179 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHHHHhhcccccccccccCCceEEEECChHHc
Confidence            46789999999999999999876 55 7999999999999 9999999863       32   35799999998764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.71  E-value=2.8e-08  Score=85.02  Aligned_cols=64  Identities=14%  Similarity=0.087  Sum_probs=53.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHH------hCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEW------TGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~------ngl~~~v~~i~gDa~~~L~  220 (227)
                      ++.+|||+|||+|.+++.++.. +...|++||+++.++ +.+++|++.      +++ .+++++++|+.+.+.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l-~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~  116 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS-DYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLP  116 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHH-HHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHH
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhh
Confidence            4568999999999999998876 346899999999999 999999875      345 469999999987554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.71  E-value=7.3e-08  Score=79.79  Aligned_cols=63  Identities=16%  Similarity=0.075  Sum_probs=54.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCC----CCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGF----LDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl----~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++.. |. .+|+++|+++.++ +.+++|++.+++    .++++++++|+.+
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHhhcccccCCCcEEEEECCccc
Confidence            36789999999999999998875 43 4899999999999 999999998875    3579999999864

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.71  E-value=4.4e-08  Score=87.78  Aligned_cols=63  Identities=8%  Similarity=0.065  Sum_probs=56.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|..++.++..  +..+|+++|+++.++ +.+++|++++|+. +++++++|+.+.
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l-~~~~~n~~r~g~~-~v~~~~~D~~~~  165 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVS-CCELAEEDFLAV  165 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCGGGS
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-eEEEEeCChHhc
Confidence            46789999999999999998873  457899999999999 9999999999985 699999998764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.70  E-value=7.8e-08  Score=79.38  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      .+...+.+...+....     .++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++...++.  ++++++
T Consensus        20 ~~~~~~~~~~~l~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~-~~a~~~~~~~~~--~~~~~~   90 (246)
T 1y8c_A           20 YKKWSDFIIEKCVENN-----LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEML-SEAENKFRSQGL--KPRLAC   90 (246)
T ss_dssp             HHHHHHHHHHHHHTTT-----CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHH-HHHHHHHHHTTC--CCEEEC
T ss_pred             HHHHHHHHHHHHHHhC-----CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHH-HHHHHHHhhcCC--CeEEEe
Confidence            4445556666665421     3678999999999999999988874 799999999999 999999988776  578888


Q ss_pred             ccHHH
Q 027179          213 VRVET  217 (227)
Q Consensus       213 gDa~~  217 (227)
                      +|+.+
T Consensus        91 ~d~~~   95 (246)
T 1y8c_A           91 QDISN   95 (246)
T ss_dssp             CCGGG
T ss_pred             ccccc
Confidence            88765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.70  E-value=1.5e-08  Score=84.48  Aligned_cols=62  Identities=18%  Similarity=-0.040  Sum_probs=53.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..+. +|++||+++.++ +.+++++...+..++++++++|+.+
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  126 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESAL-AKANETYGSSPKAEYFSFVKEDVFT  126 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHH-HHHHHHHTTSGGGGGEEEECCCTTT
T ss_pred             CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHH-HHHHHHhhccCCCcceEEEECchhc
Confidence            3456999999999999999877664 799999999999 9999999876555679999999865

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.70  E-value=1.3e-08  Score=88.81  Aligned_cols=63  Identities=8%  Similarity=-0.123  Sum_probs=55.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHH--HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI--SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa--s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++  .....+|++||+++.++ +.+++|+..+++.++++++++|+.+
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  181 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL-DGATRLAAGHALAGQITLHRQDAWK  181 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEECCGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECchhc
Confidence            367899999999999999875  33446899999999999 9999999999988889999999876

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.70  E-value=2.7e-08  Score=82.45  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=51.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++... ..+|++||+++.++ +.+++++..++   +++++++|+.+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~  103 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML-EIAKNRFRGNL---KVKYIEADYSK  103 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTCSCT---TEEEEESCTTT
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHhhccCC---CEEEEeCchhc
Confidence            467899999999999999998763 45899999999999 99999876554   68899998765

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.70  E-value=1.3e-08  Score=85.16  Aligned_cols=79  Identities=11%  Similarity=0.020  Sum_probs=59.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      ..+|....+.+.++..+..       .++.+|||+|||+|.+++.++.....+|++||+++.++ +.+++++...   ++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~  103 (266)
T 3ujc_A           35 YISSGGLEATKKILSDIEL-------NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV-NMANERVSGN---NK  103 (266)
T ss_dssp             CCSTTHHHHHHHHTTTCCC-------CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHTCCSC---TT
T ss_pred             ccccchHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHhhcC---CC
Confidence            3555565555555444422       36779999999999999999886234899999999999 9999887654   46


Q ss_pred             EEEEEccHHH
Q 027179          208 SSIHTVRVET  217 (227)
Q Consensus       208 v~~i~gDa~~  217 (227)
                      ++++++|+.+
T Consensus       104 ~~~~~~d~~~  113 (266)
T 3ujc_A          104 IIFEANDILT  113 (266)
T ss_dssp             EEEEECCTTT
T ss_pred             eEEEECcccc
Confidence            8888888764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.70  E-value=4.8e-08  Score=92.28  Aligned_cols=66  Identities=17%  Similarity=0.162  Sum_probs=58.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .++.+|||+|||+|..++.++..  +..+|+++|+++.++ +.+++|++++|+. +++++++|+.++...
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl-~~~~~n~~r~g~~-nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRA-KILSENIERWGVS-NAIVTNHAPAELVPH  171 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHH-HHHHHHHHHHTCS-SEEEECCCHHHHHHH
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhhh
Confidence            46789999999999999998864  446899999999999 9999999999996 599999999887643

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.69  E-value=2.6e-08  Score=86.40  Aligned_cols=61  Identities=20%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC--CcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~--~~v~~i~gDa~~  217 (227)
                      .+.+|||+|||+|.+++.++..|. +|++||+++.++ +.+++++..+++.  ++++++++|+.+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~v~~~~~d~~~  144 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVL-AAFRKRLAEAPADVRDRCTLVQGDMSA  144 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHH-HHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHHHHhhcccccccceEEEeCchhc
Confidence            345999999999999999988875 799999999999 9999999887642  468999998765

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.68  E-value=3.2e-08  Score=88.44  Aligned_cols=72  Identities=14%  Similarity=0.045  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      +.+.+.+++.+..       .++++|||+|||+|.++..++..+ .+|++||+|+.++ +.+++|++.  . ++++++++
T Consensus        36 ~~i~~~Iv~~l~~-------~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li-~~a~~~~~~--~-~~v~vi~g  103 (295)
T 3gru_A           36 KNFVNKAVESANL-------TKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLE-PYANKLKEL--Y-NNIEIIWG  103 (295)
T ss_dssp             HHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGH-HHHHHHHHH--C-SSEEEEES
T ss_pred             HHHHHHHHHhcCC-------CCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHH-HHHHHHhcc--C-CCeEEEEC
Confidence            4456666666543       367899999999999999998875 5899999999999 999999873  2 36999999


Q ss_pred             cHHH
Q 027179          214 RVET  217 (227)
Q Consensus       214 Da~~  217 (227)
                      |+.+
T Consensus       104 D~l~  107 (295)
T 3gru_A          104 DALK  107 (295)
T ss_dssp             CTTT
T ss_pred             chhh
Confidence            9875

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.68  E-value=8e-08  Score=86.17  Aligned_cols=66  Identities=24%  Similarity=0.285  Sum_probs=56.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~n--gl-~~~v~~i~gDa~~~L~~  221 (227)
                      .+.+|||+|||+|.+++++++. +..+|++||+|+.++ +.+++|+...  ++ .++++++++|+.+++..
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~  177 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN  177 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHhccccCCCCEEEEEChHHHHHHh
Confidence            4579999999999999999876 457999999999999 9999998654  44 45899999999998864

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.68  E-value=2.5e-08  Score=81.71  Aligned_cols=60  Identities=8%  Similarity=0.038  Sum_probs=51.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.++..++..+. +|++||+++.++ +.+++|+..++   +++++++|+.+.
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~~  109 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAI-GRACQRTKRWS---HISWAATDILQF  109 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHH-HHHHHHTTTCS---SEEEEECCTTTC
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHhcccCC---CeEEEEcchhhC
Confidence            3567999999999999999988874 899999999999 99999887643   688999887653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.67  E-value=4e-08  Score=82.27  Aligned_cols=60  Identities=15%  Similarity=-0.070  Sum_probs=51.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.. | ..+|++||+++.++ +.+.+|++.+   .+++++++|+.+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i-~~~~~~a~~~---~~v~~~~~d~~~  137 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG-RDLINLAKKR---TNIIPVIEDARH  137 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHC---TTEEEECSCTTC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHhhcc---CCeEEEEcccCC
Confidence            35779999999999999999875 3 46899999999998 8888888876   368999999876

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.67  E-value=4.4e-08  Score=82.32  Aligned_cols=59  Identities=19%  Similarity=0.155  Sum_probs=51.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..|..+|+++|+++.++ +.++++..    ..+++++++|+.+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~----~~~~~~~~~d~~~  101 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERML-TEAKRKTT----SPVVCYEQKAIED  101 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHCC----CTTEEEEECCGGG
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhhc----cCCeEEEEcchhh
Confidence            46789999999999999999988877999999999999 99998765    3468899988764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.66  E-value=2.6e-08  Score=83.49  Aligned_cols=61  Identities=16%  Similarity=0.092  Sum_probs=52.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..+..+|++||+++.++ +.+++|+..++. .+++++++|+.+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~~~~~~~d~~~  139 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGK-RVRNYFCCGLQD  139 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGG-GEEEEEECCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHhhhcCC-ceEEEEEcChhh
Confidence            4789999999999999998887767999999999999 999999887752 357888888754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.66  E-value=6.5e-08  Score=86.11  Aligned_cols=63  Identities=11%  Similarity=-0.042  Sum_probs=55.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|..++.++..  +..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l-~~a~~~~~~~g~~-~v~~~~~D~~~~  181 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVL-NVILFHSSSLHI  181 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCC-SEEEESSCGGGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHHhCCC-eEEEEECChhhc
Confidence            46789999999999999998864  346899999999999 9999999999986 599999998764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.66  E-value=2.3e-07  Score=82.12  Aligned_cols=65  Identities=17%  Similarity=0.166  Sum_probs=54.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHH---hCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEW---TGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~---ngl~~~v~~i~gDa~~~L~  220 (227)
                      .+.+|||+|||+|.++.++++. +..+|++||+|+.++ +.+++|+..   .....+++++++|+.+++.
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~  163 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVM-EQSKQHFPQISRSLADPRATVRVGDGLAFVR  163 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHH
Confidence            5679999999999999999876 457999999999999 999998743   1223579999999998875

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.66  E-value=3.7e-08  Score=80.77  Aligned_cols=61  Identities=15%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC----CcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL----DVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~----~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..+. +|+++|+++.++ +.+++|+..+++.    ++++++++|+.+
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   94 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAI-RLAETAARSPGLNQKTGGKAEFKVENASS   94 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHTTCCSCCSSSSCEEEEEECCTTS
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHH-HHHHHHHHhcCCccccCcceEEEEecccc
Confidence            567999999999999999998875 899999999999 9999999887762    358888888754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.65  E-value=8.4e-08  Score=77.78  Aligned_cols=58  Identities=17%  Similarity=0.067  Sum_probs=51.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++ +|||+|||+|.++..++..|. +|+++|+++.++ +.+++++..++.  +++++++|+.+
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~   87 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGL-AKAKQLAQEKGV--KITTVQSNLAD   87 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHH-HHHHHHHHHHTC--CEEEECCBTTT
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcChhh
Confidence            45 999999999999999888775 899999999999 999999998876  58899988764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.64  E-value=4e-08  Score=80.96  Aligned_cols=70  Identities=17%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      ..+.+++.+...      .++.+|||+|||+|.++..++..+. +|++||+++.++ +.++++...     +++++++|+
T Consensus        29 ~~~~~~~~l~~~------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~-----~v~~~~~d~   95 (250)
T 2p7i_A           29 MHPFMVRAFTPF------FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAI-SHAQGRLKD-----GITYIHSRF   95 (250)
T ss_dssp             HHHHHHHHHGGG------CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHH-HHHHHHSCS-----CEEEEESCG
T ss_pred             HHHHHHHHHHhh------cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHH-HHHHHhhhC-----CeEEEEccH
Confidence            334455555532      3567899999999999999988775 799999999999 999887542     578888887


Q ss_pred             HHH
Q 027179          216 ETF  218 (227)
Q Consensus       216 ~~~  218 (227)
                      .+.
T Consensus        96 ~~~   98 (250)
T 2p7i_A           96 EDA   98 (250)
T ss_dssp             GGC
T ss_pred             HHc
Confidence            653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.64  E-value=5.2e-08  Score=81.57  Aligned_cols=74  Identities=18%  Similarity=0.095  Sum_probs=57.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      +|+..+.+.+.+...+...      .++.+|||+|||+|.++..++..|+ +|++||+|+.++ +.++++         +
T Consensus        21 ~~~~~~~~~~~~~~~l~~~------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~---------~   83 (240)
T 3dli_A           21 FRGSRELVKARLRRYIPYF------KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMI-KFCEGK---------F   83 (240)
T ss_dssp             HTCCHHHHHHHHGGGGGGT------TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHH-HHHHTT---------S
T ss_pred             hCCCHHHHHHHHHHHHhhh------cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHH-HHHHhh---------c
Confidence            5677777776665554432      3568999999999999999888876 699999999999 888876         4


Q ss_pred             EEEEccHHHHH
Q 027179          209 SIHTVRVETFL  219 (227)
Q Consensus       209 ~~i~gDa~~~L  219 (227)
                      +++++|+.+.+
T Consensus        84 ~~~~~d~~~~~   94 (240)
T 3dli_A           84 NVVKSDAIEYL   94 (240)
T ss_dssp             EEECSCHHHHH
T ss_pred             ceeeccHHHHh
Confidence            67777777655

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.64  E-value=7e-08  Score=91.39  Aligned_cols=64  Identities=23%  Similarity=0.178  Sum_probs=57.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|||+|||+|..++.++..  +..+|+++|+++.++ +.+++|++.+|+.  ++++++|+.++..
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l-~~a~~n~~r~G~~--v~~~~~Da~~l~~  165 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRV-RGLLENVERWGAP--LAVTQAPPRALAE  165 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHCCC--CEEECSCHHHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCe--EEEEECCHHHhhh
Confidence            46789999999999999999864  346899999999999 9999999999985  8999999988654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.64  E-value=5.7e-08  Score=78.61  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=49.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..|..+|+++|+++.++ +.+++|...  . .+++++++|+.+
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~--~-~~i~~~~~d~~~  100 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVV-AAMQACYAH--V-PQLRWETMDVRK  100 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHH-HHHHHHTTT--C-TTCEEEECCTTS
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHH-HHHHHhccc--C-CCcEEEEcchhc
Confidence            5679999999999999999988766899999999999 999998763  1 357777777654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.63  E-value=2.2e-07  Score=82.78  Aligned_cols=66  Identities=21%  Similarity=0.247  Sum_probs=56.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHH-hC--C-CCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEW-TG--F-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~-ng--l-~~~v~~i~gDa~~~L~~  221 (227)
                      .+.+|||+|||+|.++.++++. +..+|++||+|+.++ +.+++|+.. ++  + ..+++++++|+.+++..
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~  147 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER  147 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHhHhhccccccCCceEEEEchHHHHHHh
Confidence            5679999999999999999876 467999999999999 999999865 22  2 35799999999998764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.63  E-value=6e-08  Score=83.71  Aligned_cols=63  Identities=16%  Similarity=0.120  Sum_probs=54.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~n-gl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++..  +..+|+++|+++.++ +.+++|++.+ +. ++++++++|+.+.
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~g~-~~v~~~~~d~~~~  174 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDI-GNVRTSRSDIADF  174 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCC-TTEEEECSCTTTC
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-CcEEEEECchhcc
Confidence            45689999999999999998875  346899999999999 9999999998 85 4699999998763

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.63  E-value=4.4e-08  Score=81.80  Aligned_cols=60  Identities=17%  Similarity=0.146  Sum_probs=51.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..+..+|++||+++.++ +.+++++..+   .+++++++|+.+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~~~~~~~d~~~  151 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGM---PVGKFILASMET  151 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTS---SEEEEEESCGGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHH-HHHHHHhccC---CceEEEEccHHH
Confidence            35789999999999999998887777899999999999 9999987654   368888888764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.63  E-value=2.7e-07  Score=80.88  Aligned_cols=66  Identities=18%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~  221 (227)
                      .+.+|||+|||+|.++.++++. +..+|++||+|+.++ +.+++|+..++  + ..+++++++|+.+++..
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~  147 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLEN  147 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHhHHhccccCCCcEEEEECChHHHHHh
Confidence            5679999999999999999876 357999999999999 99999986543  2 35799999999998764

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.62  E-value=6.1e-08  Score=80.81  Aligned_cols=79  Identities=16%  Similarity=0.007  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHHHhCC--
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTGF--  204 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga------~~V~aVEis~~Al~~~ar~N~~~ngl--  204 (227)
                      +.+...+++.+....     .++.+|||+|||+|.++..++.. +.      .+|+++|+++.++ +.+++|++.++.  
T Consensus        68 p~~~~~~~~~l~~~~-----~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~  141 (227)
T 1r18_A           68 PHMHAFALEYLRDHL-----KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSM  141 (227)
T ss_dssp             HHHHHHHHHHTTTTC-----CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhC-----CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHH-HHHHHHHHhcCccc
Confidence            344445555553221     35789999999999999998874 42      4899999999999 999999988762  


Q ss_pred             --CCcEEEEEccHHHH
Q 027179          205 --LDVSSIHTVRVETF  218 (227)
Q Consensus       205 --~~~v~~i~gDa~~~  218 (227)
                        .++++++++|+.+.
T Consensus       142 ~~~~~v~~~~~d~~~~  157 (227)
T 1r18_A          142 LDSGQLLIVEGDGRKG  157 (227)
T ss_dssp             HHHTSEEEEESCGGGC
T ss_pred             cCCCceEEEECCcccC
Confidence              23699999998763

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.62  E-value=1.5e-07  Score=77.85  Aligned_cols=58  Identities=16%  Similarity=0.093  Sum_probs=50.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..  .+|++||+++.++ +.+++|+..++.  +++++++|+.+
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~   90 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEML-EIAQEKAMETNR--HVDFWVQDMRE   90 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECCGGG
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHH-HHHHHhhhhcCC--ceEEEEcChhh
Confidence            4579999999999999998776  6899999999999 999999988763  57888888764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.62  E-value=9.6e-08  Score=81.21  Aligned_cols=62  Identities=13%  Similarity=0.125  Sum_probs=55.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..+ ..+|++||+++.++ +.+++|+..+++. +++++++|+.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~   98 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESL-EKARENTEKNGIK-NVKFLQANIFS   98 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CcEEEEccccc
Confidence            367899999999999999998764 46899999999999 9999999999986 59999999875

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.62  E-value=6.9e-08  Score=81.92  Aligned_cols=60  Identities=13%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHH------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPW------VVSNVLIPNLEWTGFLDVSSIHTVR  214 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~------Al~~~ar~N~~~ngl~~~v~~i~gD  214 (227)
                      .++.+|||+|||+|.+++.++.. |. .+|++||+++.      ++ +.+++|++.+++.++++++++|
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~-~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL-GQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCH-HHHHHHHHTSTTGGGEEEECSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHH-HHHHHHHHhcCCCCceEEEECC
Confidence            46789999999999999999876 43 68999999997      88 9999999998886789999998

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.61  E-value=4e-08  Score=85.61  Aligned_cols=70  Identities=11%  Similarity=0.092  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCE--EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE--VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~--V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      .+.+.+.+.+..       .++.+|||+|||+|.++. +. ++ .+  |++||+|+.++ +.+++|...+   +++++++
T Consensus         8 ~i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~-~~a~~~~~~~---~~v~~i~   73 (252)
T 1qyr_A            8 FVIDSIVSAINP-------QKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLA-ARLQTHPFLG---PKLTIYQ   73 (252)
T ss_dssp             HHHHHHHHHHCC-------CTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHH-HHHHTCTTTG---GGEEEEC
T ss_pred             HHHHHHHHhcCC-------CCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHH-HHHHHHhccC---CceEEEE
Confidence            345555555543       356799999999999999 65 44 46  99999999999 9999887543   3799999


Q ss_pred             ccHHHH
Q 027179          213 VRVETF  218 (227)
Q Consensus       213 gDa~~~  218 (227)
                      +|+.++
T Consensus        74 ~D~~~~   79 (252)
T 1qyr_A           74 QDAMTF   79 (252)
T ss_dssp             SCGGGC
T ss_pred             CchhhC
Confidence            999873

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.60  E-value=1.7e-07  Score=81.80  Aligned_cols=62  Identities=15%  Similarity=0.051  Sum_probs=51.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC------CCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG------FLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng------l~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++..+..+|+++|+++.++ +.++++....+      ...+++++++|+.+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~  101 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSV-KQCQQRYEDMKNRRDSEYIFSAEFITADSSK  101 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHHSSSCC-CCCEEEEEECCTTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhhhcccccccceEEEEEecccc
Confidence            5679999999999999998877667999999999999 99999987653      22368899999865

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.59  E-value=5e-08  Score=84.77  Aligned_cols=79  Identities=15%  Similarity=0.004  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      |....+..+++.-+....    ..++.+|||+|||+|.++..++.. | .++|++||++++++ +.+++|++..+   ++
T Consensus        57 p~rsklaa~i~~gl~~l~----ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~-~~l~~~a~~~~---ni  128 (233)
T 4df3_A           57 AYRSKLAAALLKGLIELP----VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVM-RDLLTVVRDRR---NI  128 (233)
T ss_dssp             TTTCHHHHHHHTTCSCCC----CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHH-HHHHHHSTTCT---TE
T ss_pred             CCchHHHHHHHhchhhcC----CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHhhHhhc---Ce
Confidence            666677766655443221    257899999999999999999874 4 46899999999999 99988876542   57


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      ..+.+|+.+
T Consensus       129 ~~V~~d~~~  137 (233)
T 4df3_A          129 FPILGDARF  137 (233)
T ss_dssp             EEEESCTTC
T ss_pred             eEEEEeccC
Confidence            777777643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.59  E-value=1e-07  Score=79.89  Aligned_cols=60  Identities=12%  Similarity=-0.064  Sum_probs=47.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||||.++..++.. +..+|++||+|+.++ +.+.++++..   +++.++++|+.+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l-~~~~~~a~~~---~~v~~~~~d~~~  116 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRER---NNIIPLLFDASK  116 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHC---SSEEEECSCTTC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHhcC---CCeEEEEcCCCC
Confidence            36789999999999999988875 346899999999988 7777766643   257888888754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.59  E-value=6.5e-08  Score=80.88  Aligned_cols=59  Identities=8%  Similarity=-0.130  Sum_probs=50.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.++..++..+. +|++||+|+.++ +.+++|..    ..+++++++|+.+.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~-~~a~~~~~----~~~~~~~~~d~~~~  113 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSAL-EIAAKENT----AANISYRLLDGLVP  113 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHH-HHHHHHSC----CTTEEEEECCTTCH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHH-HHHHHhCc----ccCceEEECccccc
Confidence            3567999999999999999998876 799999999999 99998772    23699999999764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.59  E-value=1.3e-07  Score=79.24  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..+ .+|+++|+|+.++ +.+++|+ ..+ ..+++++++|+.+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~-~~a~~~~-~~~-~~~~~~~~~d~~~   97 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAML-EVFRQKI-AGV-DRKVQVVQADARA   97 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHH-HHHHHHT-TTS-CTTEEEEESCTTS
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHH-HHHHHHh-hcc-CCceEEEEccccc
Confidence            356799999999999999998876 4899999999999 9999988 332 3468899988754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.58  E-value=5.6e-08  Score=84.16  Aligned_cols=62  Identities=15%  Similarity=0.002  Sum_probs=50.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH----------hC------CCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW----------TG------FLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~----------ng------l~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|..++.++..|. +|++||+|+.++ +.++++...          ++      ...+++++++|+++.
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGI-REFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            567999999999999999998887 899999999999 888765431          10      124699999998764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.57  E-value=1.3e-07  Score=76.70  Aligned_cols=60  Identities=12%  Similarity=-0.010  Sum_probs=48.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++. .| .+|++||+|+.++ +.++++++.++.  +++++++|+.+
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~   82 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQL-KKAENFSRENNF--KLNISKGDIRK   82 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHH-HHHHHHHHHHTC--CCCEEECCTTS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECchhh
Confidence            3568999999999998665544 45 4899999999999 999999988763  47778887754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.57  E-value=1.1e-07  Score=78.81  Aligned_cols=59  Identities=15%  Similarity=-0.004  Sum_probs=50.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..|..+|++||+++.++ +.++++...    ++++++++|+.+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~----~~~~~~~~d~~~  100 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKML-ARARAAGPD----TGITYERADLDK  100 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTSCS----SSEEEEECCGGG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHH-HHHHHhccc----CCceEEEcChhh
Confidence            36789999999999999999888776899999999999 999887643    258888888765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.57  E-value=2.5e-07  Score=81.50  Aligned_cols=73  Identities=15%  Similarity=0.007  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i  211 (227)
                      .+..+.+.++....        .+++.|||+|||||+++++++..|. ++++||+++.++ +.+++|++...-...+ .+
T Consensus       220 ~p~~l~~~~i~~~~--------~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~-~~a~~r~~~~~~~~~~-~~  288 (297)
T 2zig_A          220 FPLELAERLVRMFS--------FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYA-QLAKERFAREVPGFSL-EV  288 (297)
T ss_dssp             SCHHHHHHHHHHHC--------CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHSTTCCE-EE
T ss_pred             CCHHHHHHHHHHhC--------CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHHhccccch-hh
Confidence            34556666655543        3678999999999999999988885 899999999999 9999999876433333 44


Q ss_pred             EccH
Q 027179          212 TVRV  215 (227)
Q Consensus       212 ~gDa  215 (227)
                      .+|+
T Consensus       289 ~~~~  292 (297)
T 2zig_A          289 LDGA  292 (297)
T ss_dssp             ECC-
T ss_pred             CCcc
Confidence            4444

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.56  E-value=1.4e-07  Score=79.81  Aligned_cols=55  Identities=15%  Similarity=0.081  Sum_probs=45.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++..+. +|++||+|+.++ +.++++..      +++++++|+.+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~------~~~~~~~d~~~  104 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADML-AIARRRNP------DAVLHHGDMRD  104 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHH-HHHHHHCT------TSEEEECCTTT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhCC------CCEEEECChHH
Confidence            567999999999999999988775 899999999999 99998743      35666666543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.56  E-value=7.6e-08  Score=78.87  Aligned_cols=56  Identities=20%  Similarity=0.099  Sum_probs=47.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++..+. +|++||+++.++ +.+++++.     ++++++++|+.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~-----~~~~~~~~d~~~  100 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMR-MIAKEKLP-----KEFSITEGDFLS  100 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHH-HHHHHHSC-----TTCCEESCCSSS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHH-HHHHHhCC-----CceEEEeCChhh
Confidence            677999999999999999988865 899999999999 99988765     346677777654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.56  E-value=2.9e-07  Score=74.86  Aligned_cols=56  Identities=25%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ..+.+|||+|||+|.++..++..|+ +|++||+++.++ +.++++       .+++++++|+.+.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~-------~~~~~~~~~~~~~  106 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLV-DAARAA-------GAGEVHLASYAQL  106 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHT-------CSSCEEECCHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHh-------cccccchhhHHhh
Confidence            3568999999999999999988875 899999999999 898887       2456788887664

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.56  E-value=9.3e-08  Score=90.55  Aligned_cols=63  Identities=21%  Similarity=0.224  Sum_probs=56.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ++.+|||+|||+|..++.++..  +..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++.
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l-~~~~~n~~r~g~~-nv~~~~~D~~~~~  181 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRV-KVLHANISRCGIS-NVALTHFDGRVFG  181 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHH-HHHHHHHHHHTCC-SEEEECCCSTTHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCCHHHhh
Confidence            6789999999999999998874  346899999999999 9999999999986 5999999987754

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.56  E-value=2.1e-08  Score=89.85  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=62.3

Q ss_pred             HHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       138 ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ...|+.+...       .+..+||+|+|||.+|+++++++ .++++||.++.++ +.+++|++.   .+++++++.|++.
T Consensus        81 ~~yf~~l~~~-------n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~-~~L~~Nl~~---~~~~~V~~~D~~~  148 (283)
T 2oo3_A           81 LEYISVIKQI-------NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEY-NFLLKLPHF---NKKVYVNHTDGVS  148 (283)
T ss_dssp             HHHHHHHHHH-------SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHH-HHHTTSCCT---TSCEEEECSCHHH
T ss_pred             HHHHHHHHHh-------cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHH-HHHHHHhCc---CCcEEEEeCcHHH
Confidence            3567777652       45679999999999999999855 8999999999999 999999975   3579999999999


Q ss_pred             HHHHHh
Q 027179          218 FLERAE  223 (227)
Q Consensus       218 ~L~~~~  223 (227)
                      .+..+.
T Consensus       149 ~L~~l~  154 (283)
T 2oo3_A          149 KLNALL  154 (283)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            987643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.56  E-value=8.4e-08  Score=85.76  Aligned_cols=60  Identities=12%  Similarity=0.052  Sum_probs=52.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCC------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga------~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||||.+.+.++....      .+|+++|+++.++ +.|+.|+..+++  ++.++++|+++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~-~~a~~n~~~~g~--~~~i~~~D~l~  195 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQ--KMTLLHQDGLA  195 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTC--CCEEEESCTTS
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHHHHhCCC--CceEEECCCCC
Confidence            567999999999999999886531      5899999999999 999999999988  47899999764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.55  E-value=2.1e-07  Score=75.63  Aligned_cols=58  Identities=17%  Similarity=0.086  Sum_probs=48.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.++..++..|. +|++||+++.++ +.+++    ++. .+++++++|+.+.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~-~~a~~----~~~-~~~~~~~~d~~~~  102 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMI-AEAGR----HGL-DNVEFRQQDLFDW  102 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHH-HHHGG----GCC-TTEEEEECCTTSC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHh----cCC-CCeEEEecccccC
Confidence            3567999999999999999988865 899999999999 88887    554 3699999998653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.53  E-value=5.4e-08  Score=82.60  Aligned_cols=62  Identities=11%  Similarity=-0.012  Sum_probs=50.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCC-HHHHHHHH---HHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMD-PWVVSNVL---IPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis-~~Al~~~a---r~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||+|.+++.++.+ ...+|++||+| +.++ +.|   ++|++..++. +++++++|+.+.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml-~~A~~A~~~~~~~~~~-~v~~~~~d~~~l   90 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLF-DISKKIIKKPSKGGLS-NVVFVIAAAESL   90 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGH-HHHHHHTSCGGGTCCS-SEEEECCBTTBC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHH-HHHHHHHHHHHHcCCC-CeEEEEcCHHHh
Confidence            5679999999999999998853 34589999999 6665 777   8888888886 599999998653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.53  E-value=2e-07  Score=80.51  Aligned_cols=61  Identities=11%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.+++++...+.  +++++++|+.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~~   83 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDATE   83 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHH-HHHHHHHHSSSS--EEEEEESCTTT
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcchhh
Confidence            36789999999999999998875 2 35899999999999 999999987765  68999999865

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.53  E-value=6.1e-08  Score=82.61  Aligned_cols=73  Identities=18%  Similarity=0.080  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      .++....+.+.+.+.+..       .++.+|||+|||+|.+++.++..+ .+|++||+++.++ +.++++.       ++
T Consensus        15 ~~~~~~~~~~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~-~~a~~~~-------~~   78 (261)
T 3ege_A           15 TRVPDIRIVNAIINLLNL-------PKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMR-QQAVVHP-------QV   78 (261)
T ss_dssp             SBCCCHHHHHHHHHHHCC-------CTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHH-HSSCCCT-------TE
T ss_pred             cccccHHHHHHHHHHhCC-------CCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHH-HHHHhcc-------CC
Confidence            344445566667666643       367899999999999999998766 4899999999998 7776654       47


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      +++++|+.+
T Consensus        79 ~~~~~d~~~   87 (261)
T 3ege_A           79 EWFTGYAEN   87 (261)
T ss_dssp             EEECCCTTS
T ss_pred             EEEECchhh
Confidence            788877754

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.53  E-value=8.5e-08  Score=94.18  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             CCCeEEEeccCCCHHHHHHH---HcCCC--EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAI---SRGCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aa---s~Ga~--~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++..|+|+|||+|.++..++   .+++.  +|+|||.|+.|.  .++++.+.|++.++|++|++|+.++
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~--~a~~~v~~N~~~dkVtVI~gd~eev  423 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV--VTLENWQFEEWGSQVTVVSSDMREW  423 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH--HHHHHHHHHTTGGGEEEEESCTTTC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH--HHHHHHHhccCCCeEEEEeCcceec
Confidence            44689999999999955444   44433  789999999875  8999999999999999999999763

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.53  E-value=8.9e-08  Score=84.18  Aligned_cols=47  Identities=15%  Similarity=0.096  Sum_probs=42.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      .++.+|||+|||||.+++.++.+|+ +|++||+|+.++ +.+++|+..+
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml-~~Ar~~~~~~   90 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMC-DDLAEALADR   90 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHTSSS
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHhc
Confidence            4678999999999999999998875 899999999999 9999998654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.52  E-value=3.8e-07  Score=92.34  Aligned_cols=80  Identities=11%  Similarity=0.074  Sum_probs=63.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHh----
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWT----  202 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~n----  202 (227)
                      ..|..+...+.+++.+..       .++.+|||+|||+|.+++.++..+.  .+|++||+++.++ +.|+++++..    
T Consensus       702 sPPL~eqRle~LLelL~~-------~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emL-e~AReRLa~~lnAk  773 (950)
T 3htx_A          702 KPPLSKQRVEYALKHIRE-------SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGL-ARAAKMLHVKLNKE  773 (950)
T ss_dssp             SSCHHHHHHHHHHHHHHH-------SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHH-HHHHHHHHHHTTTT
T ss_pred             CchHHHHHHHHHHHHhcc-------cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHHhhhccchh
Confidence            334445556667777765       3678999999999999999988763  5899999999999 9999976643    


Q ss_pred             --CCCCcEEEEEccHHH
Q 027179          203 --GFLDVSSIHTVRVET  217 (227)
Q Consensus       203 --gl~~~v~~i~gDa~~  217 (227)
                        ++. +++++++|+.+
T Consensus       774 r~gl~-nVefiqGDa~d  789 (950)
T 3htx_A          774 ACNVK-SATLYDGSILE  789 (950)
T ss_dssp             CSSCS-EEEEEESCTTS
T ss_pred             hcCCC-ceEEEECchHh
Confidence              443 69999999864

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.51  E-value=1.1e-07  Score=88.38  Aligned_cols=82  Identities=21%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--------------CCCEEEEEeCCHHHHHH
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------------GCSEVHFVEMDPWVVSN  193 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--------------Ga~~V~aVEis~~Al~~  193 (227)
                      +..+|+..+.+.+.+.+..       ..+.+|+|.|||||.+.+.++..              ...+++++|+++.++ +
T Consensus       151 G~fyTP~~v~~~mv~~l~~-------~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~-~  222 (445)
T 2okc_A          151 GQYFTPRPLIQAMVDCINP-------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-T  222 (445)
T ss_dssp             GGGCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-H
T ss_pred             CcccCcHHHHHHHHHHhCC-------CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHH-H
Confidence            4556777788777776653       35679999999999999998753              124699999999999 9


Q ss_pred             HHHHHHHHhCCCC-cEEEEEccHHH
Q 027179          194 VLIPNLEWTGFLD-VSSIHTVRVET  217 (227)
Q Consensus       194 ~ar~N~~~ngl~~-~v~~i~gDa~~  217 (227)
                      .|+.|+..+|+.+ ++.++++|.+.
T Consensus       223 lA~~nl~l~g~~~~~~~i~~gD~l~  247 (445)
T 2okc_A          223 LASMNLYLHGIGTDRSPIVCEDSLE  247 (445)
T ss_dssp             HHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred             HHHHHHHHhCCCcCCCCEeeCCCCC
Confidence            9999999999853 57899999764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.51  E-value=2.3e-08  Score=85.76  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=42.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      .++.+|||+|||+|.+++.++..|+.+|+++|+|+.++ +.++++++.+
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l-~~a~~~~~~~  101 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKE  101 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTC
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHH-HHHHHHHhcC
Confidence            46789999999999999887778887899999999999 9999987654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.51  E-value=2.5e-07  Score=76.68  Aligned_cols=57  Identities=12%  Similarity=-0.016  Sum_probs=48.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++..|+ +|++||+++.++ +.++++.    ...+++++++|+.+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~----~~~~~~~~~~d~~~  109 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMI-QKGKERG----EGPDLSFIKGDLSS  109 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHTTT----CBTTEEEEECBTTB
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhc----ccCCceEEEcchhc
Confidence            567999999999999999988875 899999999999 8988874    22468899988764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.48  E-value=2.9e-07  Score=79.69  Aligned_cols=64  Identities=19%  Similarity=0.076  Sum_probs=50.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl  204 (227)
                      +.+..+.+.++....        .+++.|||.|||||+++++++..|. +++++|+++.++ +.+++|++.+++
T Consensus       196 ~~p~~l~~~~i~~~~--------~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~-~~~~~r~~~~~~  259 (260)
T 1g60_A          196 PKPRDLIERIIRASS--------NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYV-NQANFVLNQLEI  259 (260)
T ss_dssp             CCCHHHHHHHHHHHC--------CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHhC--------CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHhccC
Confidence            334556666655543        3678999999999999999988874 899999999999 999999987765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.47  E-value=1.1e-07  Score=82.75  Aligned_cols=72  Identities=19%  Similarity=0.159  Sum_probs=51.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      +||+-+   ++++++|....     ..+.+|||+|||||.++..++..+. +|++||+|+.++ +.++++       .++
T Consensus        21 ~Rp~yp---~~l~~~l~~~~-----~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml-~~a~~~-------~~v   83 (257)
T 4hg2_A           21 FRPRYP---RALFRWLGEVA-----PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQI-RQALRH-------PRV   83 (257)
T ss_dssp             CCCCCC---HHHHHHHHHHS-----SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHH-HTCCCC-------TTE
T ss_pred             HCCCcH---HHHHHHHHHhc-----CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhh-hhhhhc-------CCc
Confidence            566532   23445554432     2456899999999999999888774 899999999998 776532       357


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      +++++|+.+
T Consensus        84 ~~~~~~~e~   92 (257)
T 4hg2_A           84 TYAVAPAED   92 (257)
T ss_dssp             EEEECCTTC
T ss_pred             eeehhhhhh
Confidence            888888653

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.47  E-value=2.2e-07  Score=75.33  Aligned_cols=54  Identities=22%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      +.+|||+|||+|.++..++..|. +|++||+++.++ +.+++|.      .+++++++|+.+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~------~~~~~~~~d~~~   95 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLV-ELARQTH------PSVTFHHGTITD   95 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHH-HHHHHHC------TTSEEECCCGGG
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHhC------CCCeEEeCcccc
Confidence            67999999999999999988876 799999999999 8988872      247788888765

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.47  E-value=1.3e-07  Score=74.63  Aligned_cols=53  Identities=9%  Similarity=0.068  Sum_probs=45.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR  214 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD  214 (227)
                      .++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++      ..+++++++|
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~------~~~v~~~~~d   68 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIAL-KEVKEK------FDSVITLSDP   68 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHH-HHHHHH------CTTSEEESSG
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHH-HHHHHh------CCCcEEEeCC
Confidence            3567999999999999999988775 899999999999 999887      2357777777

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.46  E-value=3.4e-07  Score=83.07  Aligned_cols=63  Identities=24%  Similarity=0.093  Sum_probs=53.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHh-----C-CC-CcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWT-----G-FL-DVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~n-----g-l~-~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..  ...+|++||+++.++ +.+++|++.+     | .. .+++++++|+.+
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~  153 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQL-EVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN  153 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHH-HHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhhhhcccccCCCceEEEEccHHH
Confidence            36789999999999999998874  235899999999999 9999999876     4 32 479999999875

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.45  E-value=4.1e-07  Score=81.02  Aligned_cols=61  Identities=15%  Similarity=0.062  Sum_probs=54.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++... ..+++++|+ +.++ +.+++|+..+++.++++++++|+++
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  243 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFK  243 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCC
Confidence            56799999999999999988764 358999999 9999 9999999999988789999999865

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.43  E-value=4.7e-07  Score=73.95  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=39.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      ++.+|||+|||+|.++..++..|. +|++||+++.++ +.+++|+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~   85 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELA-AEASRRL   85 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHH-HHHHHhc
Confidence            567999999999999999988875 899999999999 9999886

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.43  E-value=1.9e-07  Score=83.43  Aligned_cols=59  Identities=14%  Similarity=0.119  Sum_probs=51.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      ...+|||||||+|.|++.++.. +..+|+++|+|+.++ +.+++|+..+|+.  .++...|..
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~l-e~a~~~l~~~g~~--~~~~v~D~~  191 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLV-GFVDEALTRLNVP--HRTNVADLL  191 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHH-HHHHHHHHHTTCC--EEEEECCTT
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhcCCC--ceEEEeeec
Confidence            4679999999999999998775 677999999999999 9999999999985  566666653

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.43  E-value=5.4e-07  Score=74.28  Aligned_cols=55  Identities=15%  Similarity=0.096  Sum_probs=45.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++.      .+++++++|+.+
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~-~~a~~~~------~~~~~~~~d~~~   94 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDML-THARKRL------PDATLHQGDMRD   94 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHH-HHHHHHC------TTCEEEECCTTT
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHH-HHHHHhC------CCCEEEECCHHH
Confidence            567999999999999999988765 899999999999 8998874      135666666543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.43  E-value=1.1e-07  Score=81.52  Aligned_cols=46  Identities=20%  Similarity=0.144  Sum_probs=40.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~  200 (227)
                      ..+.+|||+|||||.++..++..|+.+|++||+++.++ +.+++|..
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml-~~a~~~~~   81 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQL-AWKIRSDE   81 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCC-CHHHHTCT
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHH-HHHHHhCc
Confidence            45779999999999999999998888999999999998 88877543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.42  E-value=6.5e-09  Score=88.68  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.++..++..+ .+|++||+|+.++ +.+++|++  + .++++++++|+.+.
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~-~~a~~~~~--~-~~~v~~~~~D~~~~   87 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLF-NLSSEKLK--L-NTRVTLIHQDILQF   87 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSS-SSSSCTTT--T-CSEEEECCSCCTTT
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHH-HHHHHHhc--c-CCceEEEECChhhc
Confidence            356799999999999999998887 6899999999998 99998876  2 34799999998753

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.42  E-value=4.8e-07  Score=80.74  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=54.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++... ..+|+++|+ +.++ +.+++|++.+++.++++++.+|+++
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  251 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYK  251 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHH-HHHHHHHHhcCCCCCEEEEeCcccc
Confidence            56799999999999999998763 358999999 9999 9999999999988889999999875

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.42  E-value=5.5e-07  Score=79.49  Aligned_cols=57  Identities=18%  Similarity=0.193  Sum_probs=50.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      .+.+|||||||+|.+++.++  +..+++++|+|+.++ +.+++|+..++.  +.++..+|+.
T Consensus       105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i-~~ar~~~~~~g~--~~~~~v~D~~  161 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLG-DVITPFAREKDW--DFTFALQDVL  161 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHH-HHHHHHHHHTTC--EEEEEECCTT
T ss_pred             CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHH-HHHHHHHHhcCC--CceEEEeecc
Confidence            56799999999999999877  667999999999999 999999999986  4677777764

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.42  E-value=5.2e-08  Score=81.71  Aligned_cols=48  Identities=13%  Similarity=0.055  Sum_probs=42.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      .++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++++..+
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~  102 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNL-WELQKWLKKE  102 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHTTC
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHH-HHHHHHHhcC
Confidence            46679999999999999998887766899999999999 9999988654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.42  E-value=4.4e-07  Score=82.19  Aligned_cols=63  Identities=14%  Similarity=0.004  Sum_probs=54.1

Q ss_pred             CeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      .+|||||||+|.++.++++ ....+|++||+|+.++ +.+++|+..+. ..+++++++|+.+++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi-~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~  154 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELA-RLSREWFDIPR-APRVKIRVDDARMVAES  154 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHH-HHHHHHSCCCC-TTTEEEEESCHHHHHHT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHH-HHHHHhccccC-CCceEEEECcHHHHHhh
Confidence            4999999999999999987 3344899999999999 99999876543 35799999999999865

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.40  E-value=5.8e-07  Score=79.69  Aligned_cols=60  Identities=7%  Similarity=-0.171  Sum_probs=46.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-----cEEEEEccH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-----VSSIHTVRV  215 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~-----~v~~i~gDa  215 (227)
                      .+.+|||||||+|.....++..+..+|++||+|+.++ +.|++.....+...     +++++++|+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l-~~A~~~~~~~~~~~~~~~~~~~f~~~d~  112 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAI-ARGNERYNKLNSGIKTKYYKFDYIQETI  112 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHhccccccccccccchhhhhc
Confidence            3679999999999876666666666899999999999 99999887665421     255666665

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.40  E-value=5.5e-07  Score=79.94  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..+ ..+++++|+ +.++ +.+++|++.+++.++++++++|+++
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  244 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFE  244 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCC
Confidence            56799999999999999988764 358999999 9998 9999999999988789999999875

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.39  E-value=6.8e-07  Score=83.27  Aligned_cols=63  Identities=10%  Similarity=0.023  Sum_probs=55.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|..++.++..  +..+|+++|+++.++ +.+++|++.+|+. +++++++|+.+.
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l-~~~~~~~~~~g~~-~v~~~~~D~~~~  322 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRM-KRLKDFVKRMGIK-IVKPLVKDARKA  322 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHTTCC-SEEEECSCTTCC
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC-cEEEEEcChhhc
Confidence            46789999999999999998874  336899999999999 9999999999986 599999998653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.38  E-value=5.7e-07  Score=71.22  Aligned_cols=54  Identities=19%  Similarity=0.263  Sum_probs=44.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      ++.+|||+|||+|.++..++..+. +|+++|+++.++ +.+++|..      +++++++|+.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~-~~a~~~~~------~~~~~~~d~~   99 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILI-DYAKQDFP------EARWVVGDLS   99 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHCT------TSEEEECCTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHH-HHHHHhCC------CCcEEEcccc
Confidence            567999999999999999988864 899999999999 99998752      2445555543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.37  E-value=6.1e-07  Score=78.47  Aligned_cols=61  Identities=20%  Similarity=0.164  Sum_probs=54.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++.. ...+++++|++ .++ +.+++|+..+++.++++++++|+++
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  226 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVL-EVAKENARIQGVASRYHTIAGSAFE  226 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHH-HHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHH-HHHHHHHHhcCCCcceEEEeccccc
Confidence            4679999999999999998875 23589999999 998 9999999999988789999999875

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.36  E-value=5.9e-07  Score=76.87  Aligned_cols=56  Identities=18%  Similarity=0.110  Sum_probs=45.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..+ .+|+++|+++.++ +.++++.      .+++++++|+.+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~-~~a~~~~------~~~~~~~~d~~~  111 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMI-EKARQNY------PHLHFDVADARN  111 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHC------TTSCEEECCTTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHH-HHHHhhC------CCCEEEECChhh
Confidence            356799999999999999988865 4899999999999 8988774      235566666543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.36  E-value=1.4e-07  Score=80.37  Aligned_cols=57  Identities=12%  Similarity=-0.011  Sum_probs=46.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-----Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ++.+|||+|||||.+++.++..     ...+|++||+++.++ +.++      ++.++++++++|+.+.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l-~~a~------~~~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPA------SDMENITLHQGDCSDL  142 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCG------GGCTTEEEEECCSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHH-HHHh------ccCCceEEEECcchhH
Confidence            4579999999999999998875     246899999999998 7776      2235799999998764

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.34  E-value=2.4e-07  Score=83.67  Aligned_cols=73  Identities=14%  Similarity=0.018  Sum_probs=56.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      +..+|++.+++.+.+++..       .++.+|||+|||||.+++.++.+  ...+|++||+++.++ +.+          
T Consensus        19 g~~~TP~~l~~~~~~~~~~-------~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~-~~a----------   80 (421)
T 2ih2_A           19 GRVETPPEVVDFMVSLAEA-------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLP----------   80 (421)
T ss_dssp             --CCCCHHHHHHHHHHCCC-------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCC----------
T ss_pred             ceEeCCHHHHHHHHHhhcc-------CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH-HhC----------
Confidence            4566778888888776642       24569999999999999998864  346899999999998 666          


Q ss_pred             CcEEEEEccHHHH
Q 027179          206 DVSSIHTVRVETF  218 (227)
Q Consensus       206 ~~v~~i~gDa~~~  218 (227)
                      .+++++++|+.++
T Consensus        81 ~~~~~~~~D~~~~   93 (421)
T 2ih2_A           81 PWAEGILADFLLW   93 (421)
T ss_dssp             TTEEEEESCGGGC
T ss_pred             CCCcEEeCChhhc
Confidence            3578888887653

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.33  E-value=1.4e-06  Score=75.26  Aligned_cols=79  Identities=15%  Similarity=0.045  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      |-...+...++..+...    ...++.+|||+|||||.++..++.. | .++|++||+++.++ +.+.+.++..   .++
T Consensus        56 ~~~skla~~ll~~l~~~----~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l-~~l~~~a~~r---~nv  127 (232)
T 3id6_C           56 AFRSKLAGAILKGLKTN----PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVV-RELLLVAQRR---PNI  127 (232)
T ss_dssp             TTTCHHHHHHHTTCSCC----SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHH-HHHHHHHHHC---TTE
T ss_pred             hHHHHHHHHHHhhhhhc----CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---CCe
Confidence            33444455555444311    1246789999999999999998864 3 46899999999987 6555554432   358


Q ss_pred             EEEEccHHH
Q 027179          209 SIHTVRVET  217 (227)
Q Consensus       209 ~~i~gDa~~  217 (227)
                      +++++|+..
T Consensus       128 ~~i~~Da~~  136 (232)
T 3id6_C          128 FPLLADARF  136 (232)
T ss_dssp             EEEECCTTC
T ss_pred             EEEEccccc
Confidence            899999764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.33  E-value=1.2e-06  Score=84.39  Aligned_cols=86  Identities=14%  Similarity=-0.013  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~----Ga~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      +.-+|+..+++.+..++.....   ...+.+|+|.|||||.|.+.++..    +..+++|+|+++.++ .+|+.|+..+|
T Consensus       197 G~fyTP~~Vv~lmv~ll~~~~~---~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~-~lA~~Nl~l~g  272 (542)
T 3lkd_A          197 GEFYTPQPVAKLMTQIAFLGRE---DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTY-NLARMNMILHG  272 (542)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTCT---TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHH-HHHHHHHHHTT
T ss_pred             CeecccHHHHHHHHHHHhcccC---CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHH-HHHHHHHHHcC
Confidence            5566788888888887763210   135679999999999999988764    346899999999999 99999999999


Q ss_pred             CC-CcEEEEEccHHH
Q 027179          204 FL-DVSSIHTVRVET  217 (227)
Q Consensus       204 l~-~~v~~i~gDa~~  217 (227)
                      +. +++.++++|.+.
T Consensus       273 i~~~~~~I~~gDtL~  287 (542)
T 3lkd_A          273 VPIENQFLHNADTLD  287 (542)
T ss_dssp             CCGGGEEEEESCTTT
T ss_pred             CCcCccceEecceec
Confidence            85 468999999764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.31  E-value=7e-07  Score=82.48  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||+|..++.++..+ ..+|+++|+++.++ +.+++|++.+|+.  ++++++|+.+..
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l-~~~~~~~~~~g~~--~~~~~~D~~~~~  308 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMK--ATVKQGDGRYPS  308 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCC--CEEEECCTTCTH
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHHcCCC--eEEEeCchhhch
Confidence            467899999999999999998754 36899999999999 9999999999983  789999987654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.31  E-value=7.8e-07  Score=74.38  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++.. +..+|+++|+++.++ +.++++     . .+++++++|+.+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~-~~a~~~-----~-~~~~~~~~d~~~   89 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML-EKAADR-----L-PNTNFGKADLAT   89 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH-HHHHHH-----S-TTSEEEECCTTT
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHh-----C-CCcEEEECChhh
Confidence            35679999999999999998876 234799999999999 999887     1 246777777654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.30  E-value=2.3e-07  Score=80.99  Aligned_cols=63  Identities=8%  Similarity=-0.025  Sum_probs=52.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH--hCC-CCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW--TGF-LDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~--ngl-~~~v~~i~gDa~~~L  219 (227)
                      .+++|||+|||+|.++.++++.+ .+|++||+|+.++ +.+++|+..  +++ ..+++++.+|+.+++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i-~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~  137 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAKQLLDLDI  137 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHH-GGGTTTSTTHHHHHTCTTEEEESSGGGSCC
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHH-HHHHHHHHhhccccCCCeEEEEechHHHHH
Confidence            45799999999999999988776 8999999999999 999988643  122 247999999987654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.30  E-value=7.5e-07  Score=80.12  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ...+|||+|||+|.+++.++.. ...+|+++|+ +.++ +.+++|+...++.++++++.+|+++
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  240 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQL-EMMRKQTAGLSGSERIHGHGANLLD  240 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHH-HHHHHHHTTCTTGGGEEEEECCCCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHH-HHHHHHHHhcCcccceEEEEccccc
Confidence            4579999999999999999874 3458999999 9998 9999999988887789999999875

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.27  E-value=1e-06  Score=87.63  Aligned_cols=61  Identities=16%  Similarity=0.168  Sum_probs=47.4

Q ss_pred             CCeEEEeccCCCHHHHHHHH--c--C----------CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAIS--R--G----------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas--~--G----------a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      +..|||+|||+|.++..++.  .  |          +.+|+|||.|+.|+ ..+++. ..|++.++|+++++|+.++
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~-~~l~~~-~~Ng~~d~VtVI~gd~eev  484 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI-VTLKYM-NVRTWKRRVTIIESDMRSL  484 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH-HHHHHH-HHHTTTTCSEEEESCGGGH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH-HHHHHH-HhcCCCCeEEEEeCchhhc
Confidence            46899999999999754322  1  2          34999999999987 444443 3499999999999999886

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.27  E-value=3.4e-06  Score=75.94  Aligned_cols=61  Identities=18%  Similarity=0.074  Sum_probs=54.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ...+|||+|||+|.+++.++... ..+++++|+ +.++ +.+++++...++.++++++.+|+++
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~l~~~v~~~~~d~~~  263 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVA-EEARELLTGRGLADRCEILPGDFFE  263 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHH-HHHHHhhhhcCcCCceEEeccCCCC
Confidence            46799999999999999988753 458999999 9998 9999999999988899999999874

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.25  E-value=8.1e-07  Score=72.39  Aligned_cols=52  Identities=15%  Similarity=-0.063  Sum_probs=42.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      ++.+|||+|||+|.++..+   +..+|++||+++.++ +.+++|.      .+++++++|+.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~-~~a~~~~------~~~~~~~~d~~   87 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAML-AVGRRRA------PEATWVRAWGE   87 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHH-HHHHHHC------TTSEEECCCTT
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHH-HHHHHhC------CCcEEEEcccc
Confidence            6789999999999999876   555899999999999 9998875      23556666553

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.23  E-value=1.1e-06  Score=84.10  Aligned_cols=83  Identities=13%  Similarity=-0.058  Sum_probs=65.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc----C---------------CCEEEEEeCCH
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----G---------------CSEVHFVEMDP  188 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~----G---------------a~~V~aVEis~  188 (227)
                      +..+|+..+++.+.+++..       ..+.+|+|.|||||.|.+.++..    +               ...++++|+++
T Consensus       149 G~fyTP~~iv~~mv~~l~p-------~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~  221 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKP-------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP  221 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred             CeeeCCHHHHHHHHHHhcc-------CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCH
Confidence            4556777777777777653       35679999999999999988752    1               13699999999


Q ss_pred             HHHHHHHHHHHHHhCCCC----cEEEEEccHHHH
Q 027179          189 WVVSNVLIPNLEWTGFLD----VSSIHTVRVETF  218 (227)
Q Consensus       189 ~Al~~~ar~N~~~ngl~~----~v~~i~gDa~~~  218 (227)
                      .++ ++|+.|+..+++.+    ++.++++|.+..
T Consensus       222 ~~~-~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~  254 (541)
T 2ar0_A          222 GTR-RLALMNCLLHDIEGNLDHGGAIRLGNTLGS  254 (541)
T ss_dssp             HHH-HHHHHHHHTTTCCCBGGGTBSEEESCTTSH
T ss_pred             HHH-HHHHHHHHHhCCCccccccCCeEeCCCccc
Confidence            999 99999999999864    278999998753

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.23  E-value=5.9e-07  Score=80.38  Aligned_cols=43  Identities=14%  Similarity=0.066  Sum_probs=38.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++.+|||+|||||.++..++..|+.+|++||+++.++ +++.+
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL-~~a~r  126 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQL-VWKLR  126 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCS-CHHHH
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHH-HHHHH
Confidence            46789999999999999999888988999999999998 77544

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.23  E-value=2.5e-06  Score=75.16  Aligned_cols=60  Identities=10%  Similarity=0.032  Sum_probs=53.4

Q ss_pred             CCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..+|||+|||+|.+++.++.. ...+++++|+ +.++ +.+++++...++.++++++.+|+++
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  230 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPA-SAAHRRFLDTGLSGRAQVVVGSFFD  230 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHH-HHHHHhhhhcCcCcCeEEecCCCCC
Confidence            579999999999999998875 3458999999 9998 9999999999988889999999864

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.22  E-value=1.5e-06  Score=76.90  Aligned_cols=61  Identities=10%  Similarity=0.058  Sum_probs=54.2

Q ss_pred             CCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      +.+|||+|||+|.++..++.. ...+++++|+ +.++ +.+++++...++.++++++.+|+++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~  241 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTR-DAARKTIHAHDLGGRVEFFEKNLLDA  241 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCGGGEEEEECCTTCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHH-HHHHHHHHhcCCCCceEEEeCCcccC
Confidence            679999999999999999875 3468999999 8888 99999999999888899999998753

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.18  E-value=1.2e-06  Score=72.35  Aligned_cols=50  Identities=6%  Similarity=-0.025  Sum_probs=39.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||||||+|.++..++.+ ..+|++||+++.+.            + .+++++++|+.+
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~------------~-~~v~~~~~D~~~   73 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEE------------I-AGVRFIRCDIFK   73 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCC------------C-TTCEEEECCTTS
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccccc------------C-CCeEEEEccccC
Confidence            36789999999999999999887 45899999997421            1 246777887654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.17  E-value=1.5e-06  Score=76.44  Aligned_cols=59  Identities=12%  Similarity=0.037  Sum_probs=52.6

Q ss_pred             CeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+|||+|||+|.+++.++.. ...+++++|+ +.++ +.+++|+...++.++++++.+|+++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~  228 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSL-GVARDNLSSLLAGERVSLVGGDMLQ  228 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCT-HHHHHHTHHHHHTTSEEEEESCTTT
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHH-HHHHHHHhhcCCCCcEEEecCCCCC
Confidence            79999999999999998875 3458999999 9998 9999999988887789999999875

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.17  E-value=2.5e-06  Score=73.49  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=37.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~  200 (227)
                      .++.+|||+|||+|.+.+.++..+..+|++||+++.++ +.++++++
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l-~~a~~~~~  115 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQ  115 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHT
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHH-HHHHHHHh
Confidence            36789999999999977655554445899999999999 99988654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.17  E-value=5.6e-06  Score=70.11  Aligned_cols=56  Identities=7%  Similarity=0.005  Sum_probs=45.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++.. +..+|+++|+++.++ +.++++.      .++.++.+|+.+
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~------~~~~~~~~d~~~  141 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRY------PQVTFCVASSHR  141 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHC------TTSEEEECCTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHhC------CCcEEEEcchhh
Confidence            5679999999999999998876 235899999999999 8888764      246777777643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.12  E-value=2.3e-06  Score=66.11  Aligned_cols=52  Identities=10%  Similarity=0.022  Sum_probs=42.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||+|||+|.+++.++.. |. .+|+++|+++ ++ +.           .+++++++|+.+.
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~-~~-----------~~~~~~~~d~~~~   74 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD-PI-----------VGVDFLQGDFRDE   74 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC-CC-----------TTEEEEESCTTSH
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc-cc-----------CcEEEEEcccccc
Confidence            35679999999999999998876 54 6899999999 65 32           3688999998654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.11  E-value=1.3e-05  Score=69.88  Aligned_cols=59  Identities=25%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             CCeEEEeccCC---CHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          156 PGRWLDLYSGT---GSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       156 ~~~VLDLgsGT---G~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ..+|||||||+   |.+...+... ...+|++||+|+.++ +.+++++..   .++++++++|+.+.
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l-~~Ar~~~~~---~~~v~~~~~D~~~~  140 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVL-THGRALLAK---DPNTAVFTADVRDP  140 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHTT---CTTEEEEECCTTCH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHH-HHHHHhcCC---CCCeEEEEeeCCCc
Confidence            47999999999   9987655543 235899999999999 999998843   24799999999753

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.11  E-value=2.8e-06  Score=69.10  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=38.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      ++.+|||+|||+|.++..++..| .+|+++|+++.++ +.++++.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~-~~~~~~~   74 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAA-EQAKEKL   74 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHH-HHHHTTS
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHH-HHHHHhC
Confidence            56799999999999999988876 6899999999999 8888764

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.08  E-value=1.2e-05  Score=68.03  Aligned_cols=44  Identities=32%  Similarity=0.317  Sum_probs=39.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~  200 (227)
                      ++.+|||+|||+|.++..++..|. +|++||+|+.++ +.++++..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~   97 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEML-EVAREKGV   97 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHhhcC
Confidence            567999999999999999888765 899999999999 99988754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.02  E-value=2.8e-06  Score=81.59  Aligned_cols=81  Identities=14%  Similarity=-0.013  Sum_probs=63.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--------C--------CCEEEEEeCCHHHH
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------G--------CSEVHFVEMDPWVV  191 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--------G--------a~~V~aVEis~~Al  191 (227)
                      +.-+|+..+++.+.+++..        ...+|+|.|||||.|-++++..        +        ...++++|+++.++
T Consensus       225 G~fyTP~~Vv~lmv~ll~p--------~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~  296 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLEP--------YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW  296 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHCC--------CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH
T ss_pred             CeEeCCHHHHHHHHHHHhc--------CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH
Confidence            5667888888888777653        2239999999999999987531        0        24799999999999


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          192 SNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       192 ~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                       ++|+.|+..+|+..++.++++|.+.
T Consensus       297 -~lA~~Nl~l~gi~~~i~i~~gDtL~  321 (544)
T 3khk_A          297 -KLAAMNMVIRGIDFNFGKKNADSFL  321 (544)
T ss_dssp             -HHHHHHHHHTTCCCBCCSSSCCTTT
T ss_pred             -HHHHHHHHHhCCCcccceeccchhc
Confidence             9999999999987655558888653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.92  E-value=2.4e-05  Score=67.62  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=45.4

Q ss_pred             CCCeEEEeccCCCHHHHHHH----Hc-CCCEE--EEEeCCHHHHHHHHHHHHHHh-CCCC-cEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAI----SR-GCSEV--HFVEMDPWVVSNVLIPNLEWT-GFLD-VSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aa----s~-Ga~~V--~aVEis~~Al~~~ar~N~~~n-gl~~-~v~~i~gDa~~~L  219 (227)
                      ++.+|||+|||||.++..++    .+ ...+|  ++||.|+.++ +.+++++... ++.+ ++.+.++++.++.
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml-~~a~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKTSNLENVKFAWHKETSSEYQ  124 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHH-HHHHHHHHTCSSCTTEEEEEECSCHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHH-HHHHHHHHhccCCCcceEEEEecchhhhh
Confidence            45699999999998876433    22 22334  9999999999 9999988654 4432 3456677876543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.91  E-value=2.9e-05  Score=69.54  Aligned_cols=73  Identities=18%  Similarity=0.165  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      +.+.+++.|..       .++..++|.+||.|..+.+++.++ .+|+++|.|+.|+ +.+++ ++.    ++++++++|.
T Consensus        10 Ll~e~le~L~~-------~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai-~~A~~-L~~----~rv~lv~~~f   75 (285)
T 1wg8_A           10 LYQEALDLLAV-------RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAV-ARAKG-LHL----PGLTVVQGNF   75 (285)
T ss_dssp             THHHHHHHHTC-------CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHH-HHHHH-TCC----TTEEEEESCG
T ss_pred             HHHHHHHhhCC-------CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHH-HHHHh-hcc----CCEEEEECCc
Confidence            44556666653       367899999999999999999874 5899999999999 88887 533    4899999998


Q ss_pred             HHHHHHH
Q 027179          216 ETFLERA  222 (227)
Q Consensus       216 ~~~L~~~  222 (227)
                      .++-..+
T Consensus        76 ~~l~~~L   82 (285)
T 1wg8_A           76 RHLKRHL   82 (285)
T ss_dssp             GGHHHHH
T ss_pred             chHHHHH
Confidence            7654333

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.89  E-value=2.5e-05  Score=70.12  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCH---HHHHHHHHHHHHHhCCC
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP---WVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~---~Al~~~ar~N~~~ngl~  205 (227)
                      +-|.+..+.+.++....        .+++.|||.|||||+.++++...| .+.+++|+++   ..+ +.++++++..+.-
T Consensus       224 ~~~kp~~l~~~~i~~~~--------~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~-~~~~~Rl~~~~~~  293 (319)
T 1eg2_A          224 PTQKPAAVIERLVRALS--------HPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYY-QKQLTFLQDDGLI  293 (319)
T ss_dssp             TTCCCHHHHHHHHHHHS--------CTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHH-HHHHHHC------
T ss_pred             CCCCCHHHHHHHHHHhC--------CCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHH-HHHHHHHHHccCC
Confidence            33455667777665543        367899999999999999988877 4799999999   998 9999998877632


Q ss_pred             ---CcEEEEEccHHHHHHHHhh
Q 027179          206 ---DVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       206 ---~~v~~i~gDa~~~L~~~~~  224 (227)
                         .+.+++. ...++|+++++
T Consensus       294 ~~~~~~~~~~-~~~~~~~~~~~  314 (319)
T 1eg2_A          294 DKARSYEIVE-GAANFGAALQR  314 (319)
T ss_dssp             ---CCEEEEE-CGGGTHHHHCC
T ss_pred             cccceeeecc-hHHHHHHHHhc
Confidence               2355444 55677776654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.87  E-value=1.9e-05  Score=65.01  Aligned_cols=48  Identities=17%  Similarity=0.115  Sum_probs=38.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      ++.+|||+|||+|.++..++..     +++|+++.++ +.+++|        +++++++|+.
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~-~~a~~~--------~~~~~~~d~~   94 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMA-EIARKR--------GVFVLKGTAE   94 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHH-HHHHHT--------TCEEEECBTT
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHH-HHHHhc--------CCEEEEcccc
Confidence            4779999999999999987654     9999999999 898886        2455665553

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.87  E-value=8.9e-06  Score=73.48  Aligned_cols=56  Identities=20%  Similarity=0.225  Sum_probs=46.9

Q ss_pred             CeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .+|+|||||+|.+++.+.+.|  +..|+++|+++.|+ +..+.|..      ...++++|+.++.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~-~~~~~N~~------~~~~~~~Di~~~~   60 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYNFP------HTQLLAKTIEGIT   60 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCT------TSCEECSCGGGCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHH-HHHHHhcc------ccccccCCHHHcc
Confidence            479999999999999998888  56899999999999 99999863      1346788887653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.82  E-value=3.5e-05  Score=61.70  Aligned_cols=37  Identities=19%  Similarity=0.037  Sum_probs=31.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CC---------CEEEEEeCCHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GC---------SEVHFVEMDPWV  190 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga---------~~V~aVEis~~A  190 (227)
                      .++.+|||+|||+|.+++.++.+ |.         .+|++||+++.+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~   67 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF   67 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc
Confidence            35789999999999999999876 54         689999999843

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.82  E-value=1.1e-05  Score=72.25  Aligned_cols=77  Identities=14%  Similarity=0.070  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI  210 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~  210 (227)
                      +.+..+.+.++....        .+++.|||.|||||+.++++...| .+.+++|+++..+ +.++++++..+..  ...
T Consensus       236 ~kp~~l~~~~i~~~~--------~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~-~~~~~r~~~~~~~--~~~  303 (323)
T 1boo_A          236 RFPAKLPEFFIRMLT--------EPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYV-AASAFRFLDNNIS--EEK  303 (323)
T ss_dssp             CCCTHHHHHHHHHHC--------CTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHH-HHHHGGGSCSCSC--HHH
T ss_pred             cCCHHHHHHHHHHhC--------CCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHH-HHHHHHHHhcccc--hHH
Confidence            334556666655442        367899999999999999988887 4899999999999 9999998776653  445


Q ss_pred             EEccHHHHH
Q 027179          211 HTVRVETFL  219 (227)
Q Consensus       211 i~gDa~~~L  219 (227)
                      ++.|+.+..
T Consensus       304 ~~~~~~~i~  312 (323)
T 1boo_A          304 ITDIYNRIL  312 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.81  E-value=2.4e-05  Score=63.08  Aligned_cols=35  Identities=14%  Similarity=0.028  Sum_probs=30.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-C--CCEEEEEeCCHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-G--CSEVHFVEMDPW  189 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-G--a~~V~aVEis~~  189 (227)
                      ++.+|||+|||+|.+++.++.+ +  ..+|++||+++.
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            5679999999999999999875 3  468999999984

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.80  E-value=1.6e-05  Score=72.96  Aligned_cols=55  Identities=25%  Similarity=0.280  Sum_probs=47.5

Q ss_pred             CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+++|||||+|.+++.+...|...|++||+++.|+ +..+.|..      ...++++|+.+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~-~t~~~N~~------~~~~~~~DI~~~   57 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAI-NTHAINFP------RSLHVQEDVSLL   57 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHH-HHHHHHCT------TSEEECCCGGGC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHH-HHHHHhCC------CCceEecChhhc
Confidence            47999999999999999888988899999999998 89888842      356888998765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.79  E-value=2e-05  Score=71.45  Aligned_cols=42  Identities=10%  Similarity=-0.106  Sum_probs=38.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN  198 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N  198 (227)
                      ++.+|||+|||+|.+...++..|. +|++||+++.++ +.++++
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~-~~a~~~  148 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVA-AKAREK  148 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHH-HHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHH-HHHHHc
Confidence            567999999999999999988876 899999999998 888876

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.76  E-value=4.3e-05  Score=68.84  Aligned_cols=46  Identities=28%  Similarity=0.351  Sum_probs=41.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~  200 (227)
                      ..+.+++|||||+|.+++.+.+.|...|+++|+++.|+ +..+.|..
T Consensus         9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~-~t~~~N~~   54 (327)
T 2c7p_A            9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNFG   54 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHHS
T ss_pred             cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHcC
Confidence            34578999999999999999989998999999999999 99999963

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.72  E-value=1.9e-06  Score=75.94  Aligned_cols=60  Identities=22%  Similarity=0.044  Sum_probs=40.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEE--EccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIH--TVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~-ngl~~~v~~i--~gDa~~  217 (227)
                      .++.+|||||||+|.++..++.+  .+|++||+++ .+ ..++++... .....+++++  ++|+.+
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~-~~a~~~~~~~~~~~~~v~~~~~~~D~~~  143 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LG-TSGHEKPRLVETFGWNLITFKSKVDVTK  143 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CC-CTTSCCCCCCCCTTGGGEEEECSCCGGG
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hh-hhhhhchhhhhhcCCCeEEEeccCcHhh
Confidence            35789999999999999998887  4799999998 43 333222100 0111156777  777754

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.64  E-value=5.3e-05  Score=76.56  Aligned_cols=89  Identities=13%  Similarity=0.049  Sum_probs=60.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC----CCEEEEEeCCHHHHHHHH--HHHHH
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVL--IPNLE  200 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G----a~~V~aVEis~~Al~~~a--r~N~~  200 (227)
                      .+.-+|++.++..+.+++....+ ....++.+|||.|||||+|.++++...    ..+++|+|+++.++ +.|  +.|+.
T Consensus       294 ~GqFYTP~eLA~lMVeLA~ill~-~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al-~LAK~RlNL~  371 (878)
T 3s1s_A          294 EGVVPTDIELGKVLSIISQHILG-RPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFL-ELLSIRLGLL  371 (878)
T ss_dssp             CBSSSCCHHHHHHHHHHHHHHHC-SCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGH-HHHHHHHHTT
T ss_pred             CceEcCCHHHHHHHHHHHhhhcc-ccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHH-HHHHHHHHHH
Confidence            35667888888777666211000 001246799999999999999988753    24799999999998 999  88887


Q ss_pred             HhCCCC---cEEEEEccHHH
Q 027179          201 WTGFLD---VSSIHTVRVET  217 (227)
Q Consensus       201 ~ngl~~---~v~~i~gDa~~  217 (227)
                      .|++..   ...+...|..+
T Consensus       372 lN~LlhGi~~~~I~~dD~L~  391 (878)
T 3s1s_A          372 FPQLVSSNNAPTITGEDVCS  391 (878)
T ss_dssp             STTTCBTTBCCEEECCCGGG
T ss_pred             HhhhhcCCCcceEEecchhc
Confidence            644321   23455556543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.63  E-value=0.00024  Score=60.33  Aligned_cols=60  Identities=17%  Similarity=-0.018  Sum_probs=49.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--CCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--LDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl--~~~v~~i~gDa~~  217 (227)
                      ..++||++|||  .-++.+|....++|+.||.|++-. +.+++|++.+|+  .++++++.+|+.+
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~-~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWA-RMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHH-HHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            35699999984  556666654247899999999998 999999999998  7899999999654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.61  E-value=0.00013  Score=66.80  Aligned_cols=66  Identities=15%  Similarity=0.137  Sum_probs=56.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCC-----CcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFL-----DVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~-----~~v~~i~gDa~~~L~  220 (227)
                      .++.+|||+|||.|.=++.++..+. +.|+++|+++..+ +.+++|+++++..     +++++.+.|+..+-.
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~-~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI-ARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH-HHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH-HHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            4788999999999999999887643 5799999999999 9999999998763     468999999876543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.58  E-value=3.9e-05  Score=63.06  Aligned_cols=49  Identities=8%  Similarity=-0.065  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCeEEEeccCCC-HHHHHHHH-cCCCEEEEEeCCHHHH
Q 027179          137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTG-SVGIEAIS-RGCSEVHFVEMDPWVV  191 (227)
Q Consensus       137 ~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG-~isI~aas-~Ga~~V~aVEis~~Al  191 (227)
                      -+.+.+++....     ..+.+|||+|||+| .++..++. .|. .|+++|+++.|+
T Consensus        22 ~e~LaeYI~~~~-----~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av   72 (153)
T 2k4m_A           22 WNDLAVYIIRCS-----GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHG   72 (153)
T ss_dssp             HHHHHHHHHHHS-----CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSST
T ss_pred             HHHHHHHHHhcC-----CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCcccc
Confidence            455666665442     34679999999999 59999886 776 699999999998

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.56  E-value=8.1e-05  Score=66.81  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=48.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ...+|+|+|||+|.++++++.+ ...+++..|. |..+ +.+++++...+ .++++++.+|.++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~-~~a~~~~~~~~-~~rv~~~~gD~~~  239 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVV-WTAKQHFSFQE-EEQIDFQEGDFFK  239 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHH-HHHHHHSCC---CCSEEEEESCTTT
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHH-HHHHHhhhhcc-cCceeeecCcccc
Confidence            3469999999999999999875 3457888887 8888 99999887655 4689999999864

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.56  E-value=2.6e-05  Score=69.36  Aligned_cols=59  Identities=12%  Similarity=0.038  Sum_probs=46.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++.. ...+++++|+ +..+ .  +++++..++.++++++.+|+++
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~--~~~~~~~~~~~~v~~~~~d~~~  243 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVV-A--RHRLDAPDVAGRWKVVEGDFLR  243 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHH-T--TCCCCCGGGTTSEEEEECCTTT
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHh-h--cccccccCCCCCeEEEecCCCC
Confidence            4679999999999999998875 3457999999 5555 4  5555556666789999999863

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.52  E-value=6.8e-05  Score=66.78  Aligned_cols=60  Identities=20%  Similarity=0.122  Sum_probs=45.2

Q ss_pred             CeEEEeccCCCH--HHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          157 GRWLDLYSGTGS--VGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       157 ~~VLDLgsGTG~--isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+|||||||+|+  ...+++.+  ...+|++||.|+.++ +.+++++.... ..+++++++|+.+.
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mL-a~Ar~~l~~~~-~~~~~~v~aD~~~~  143 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVL-TLSQGLLASTP-EGRTAYVEADMLDP  143 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHH-HTTHHHHCCCS-SSEEEEEECCTTCH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHH-HHHHHHhccCC-CCcEEEEEecccCh
Confidence            689999999733  33444432  335899999999999 99998876543 24799999999775

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.51  E-value=0.00023  Score=65.17  Aligned_cols=79  Identities=16%  Similarity=0.096  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      +.+.+.+.+.+...... ...+++.|||+|.|.|+++..++.+ .+++|++||+|+..+ ..+++.. .   .+++++++
T Consensus        38 ~~i~~~Iv~~~~l~~~~-~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~-~~L~~~~-~---~~~l~ii~  111 (353)
T 1i4w_A           38 PTVYNKIFDKLDLTKTY-KHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKF-E---GSPLQILK  111 (353)
T ss_dssp             HHHHHHHHHHHCGGGTC-CCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHT-T---TSSCEEEC
T ss_pred             HHHHHHHHHhccCCccc-CcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHH-HHHHHhc-c---CCCEEEEE
Confidence            34556666666432000 0013579999999999999999875 457899999999988 8887765 1   35799999


Q ss_pred             ccHHHH
Q 027179          213 VRVETF  218 (227)
Q Consensus       213 gDa~~~  218 (227)
                      +|++++
T Consensus       112 ~D~l~~  117 (353)
T 1i4w_A          112 RDPYDW  117 (353)
T ss_dssp             SCTTCH
T ss_pred             CCccch
Confidence            999765

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.51  E-value=9.3e-05  Score=65.15  Aligned_cols=43  Identities=19%  Similarity=0.177  Sum_probs=35.2

Q ss_pred             CCeEEEeccCCCH----HHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHH
Q 027179          156 PGRWLDLYSGTGS----VGIEAISR-G----CSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       156 ~~~VLDLgsGTG~----isI~aas~-G----a~~V~aVEis~~Al~~~ar~N~  199 (227)
                      +.+|||+|||||.    +++.++.. +    ..+|+|+|+|+.++ +.|++|+
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L-~~Ar~~~  157 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSGI  157 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHTE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHH-HHHHhcC
Confidence            4689999999998    66655543 3    23899999999999 9999985

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.44  E-value=7.1e-05  Score=67.46  Aligned_cols=54  Identities=13%  Similarity=0.059  Sum_probs=43.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ...+|||+|||+|.+++.++.. ...+++++|+ +.++ +.++++       ++++++.+|+++
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~d~~~  257 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI-QDAPAF-------SGVEHLGGDMFD  257 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH-Hhhhhc-------CCCEEEecCCCC
Confidence            4579999999999999999875 3458999999 8887 666542       469999999875

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.41  E-value=0.00032  Score=66.99  Aligned_cols=80  Identities=18%  Similarity=0.035  Sum_probs=63.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc----C----------CCEEEEEeCCHHHHHH
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----G----------CSEVHFVEMDPWVVSN  193 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~----G----------a~~V~aVEis~~Al~~  193 (227)
                      +.-+|+..|++.+.+++..       ..+.+|+|.+||||.|-+++...    +          ...++++|+++.+. .
T Consensus       197 GqfyTP~~Vv~lmv~l~~p-------~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~-~  268 (530)
T 3ufb_A          197 GEFYTPRPVVRFMVEVMDP-------QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPY-L  268 (530)
T ss_dssp             CCCCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHH-H
T ss_pred             ceECCcHHHHHHHHHhhcc-------CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHH-H
Confidence            5567888888888777754       35679999999999999887631    1          13599999999999 9


Q ss_pred             HHHHHHHHhCCCCcEEEEEccHH
Q 027179          194 VLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       194 ~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      +|+-|+-.+|+.. ..+.++|..
T Consensus       269 la~mNl~lhg~~~-~~I~~~dtL  290 (530)
T 3ufb_A          269 LVQMNLLLHGLEY-PRIDPENSL  290 (530)
T ss_dssp             HHHHHHHHHTCSC-CEEECSCTT
T ss_pred             HHHHHHHhcCCcc-ccccccccc
Confidence            9999999999863 567888765

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.38  E-value=5.7e-05  Score=65.91  Aligned_cols=34  Identities=32%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPW  189 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~  189 (227)
                      .++.+|||||||+|.++..++.+  .+|++||+++.
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m  106 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTL  106 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchh
Confidence            35789999999999999998877  57999999983

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.38  E-value=0.00016  Score=65.20  Aligned_cols=54  Identities=11%  Similarity=0.018  Sum_probs=43.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ...+|||+|||+|.+++.++.. ...+++++|+ +.++ +.++++       ++++++.+|+++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~D~~~  255 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVI-SEAPQF-------PGVTHVGGDMFK  255 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHH-Hhhhhc-------CCeEEEeCCcCC
Confidence            4579999999999999999875 3458999999 8877 665532       479999999875

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.35  E-value=0.00035  Score=62.24  Aligned_cols=58  Identities=16%  Similarity=0.059  Sum_probs=47.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCE--EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSE--VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~--V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      ...+++|||||.|.+++.+...|...  |+++|+++.|+ +..+.|..      ...++++|+.++.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~-~ty~~N~~------~~~~~~~DI~~i~   74 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSI-TVGMVRHQ------GKIMYVGDVRSVT   74 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHH-HHHHHHTT------TCEEEECCGGGCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHH-HHHHHhCC------CCceeCCChHHcc
Confidence            45689999999999999988888765  79999999998 88887742      2357888987653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.35  E-value=0.00011  Score=65.38  Aligned_cols=54  Identities=17%  Similarity=0.048  Sum_probs=43.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ...+|||+|||+|.++..++.. ...+++++|+ +.++ +.++++       .+++++.+|+++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~d~~~  242 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-ENLSGS-------NNLTYVGGDMFT  242 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCB-------TTEEEEECCTTT
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHH-hhcccC-------CCcEEEeccccC
Confidence            4579999999999999998875 3358999999 9888 776641       248999999864

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.31  E-value=0.00064  Score=62.66  Aligned_cols=60  Identities=17%  Similarity=0.137  Sum_probs=49.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHH-Hc-C-CCEEEEEeCCHHHHHHHHHHHHHH--hCCC-CcEEEEEcc
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI-SR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFL-DVSSIHTVR  214 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa-s~-G-a~~V~aVEis~~Al~~~ar~N~~~--ngl~-~~v~~i~gD  214 (227)
                      .++..|+|+||+.|.+++.++ .. + ..+|+++|.+|... +.+++|++.  |+.. +++++++.-
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~-~~L~~n~~~~~N~~~~~~v~~~~~a  290 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRRYTDTNFASRITVHGCG  290 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHHHhhhccCCCCCEEEEEeE
Confidence            467899999999999999887 33 3 37999999999999 999999998  5433 568777643

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.27  E-value=0.00057  Score=62.71  Aligned_cols=75  Identities=19%  Similarity=0.118  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      +.+++++.|..       .++..++|..+|.|.-+.+++.+ | .++|+++|.|+.|+ +.++ ++    ..++++++++
T Consensus        45 Ll~Evl~~L~i-------~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al-~~A~-rL----~~~Rv~lv~~  111 (347)
T 3tka_A           45 LLDEAVNGLNI-------RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI-AVAK-TI----DDPRFSIIHG  111 (347)
T ss_dssp             TTHHHHHHTCC-------CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHT-TC----CCTTEEEEES
T ss_pred             cHHHHHHhhCC-------CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHH-hh----cCCcEEEEeC
Confidence            44556666653       46789999999999999998875 3 46899999999999 8773 33    2468999999


Q ss_pred             cHHHHHHHHh
Q 027179          214 RVETFLERAE  223 (227)
Q Consensus       214 Da~~~L~~~~  223 (227)
                      +..++.+.+.
T Consensus       112 nF~~l~~~L~  121 (347)
T 3tka_A          112 PFSALGEYVA  121 (347)
T ss_dssp             CGGGHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            8776655443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.21  E-value=0.00019  Score=64.37  Aligned_cols=54  Identities=15%  Similarity=-0.010  Sum_probs=43.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..++.++ ..+++++|+ +.++ +.++++       .+++++.+|+++
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~d~~~  263 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-ENAPPL-------SGIEHVGGDMFA  263 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHH-Hhhhhc-------CCCEEEeCCccc
Confidence            45799999999999999998764 357999999 8887 766541       358999999865

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.15  E-value=0.00036  Score=61.28  Aligned_cols=53  Identities=15%  Similarity=0.213  Sum_probs=44.7

Q ss_pred             eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      +|+|||||.|.+++.+-..|..-|.++|+++.|+ +.-+.|.     .  .+++++|+.+.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~-~ty~~N~-----~--~~~~~~DI~~i   54 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-KTYESNH-----S--AKLIKGDISKI   54 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTH-HHHHHHC-----C--SEEEESCGGGC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHHC-----C--CCcccCChhhC
Confidence            6999999999999988777888899999999998 8888874     2  25788888653

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.03  E-value=0.00064  Score=64.63  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .-+++|||||.|.+++.+-..|..-|+++|+++.|+ +..+.|....   ....++++|+.++.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~-~ty~~N~~~~---p~~~~~~~DI~~i~  147 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAV-RTYKANHYCD---PATHHFNEDIRDIT  147 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHH-HHHHHHSCCC---TTTCEEESCTHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHhcccC---CCcceeccchhhhh
Confidence            358999999999999998777877799999999998 8888875211   12457789988765

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.99  E-value=0.00061  Score=55.37  Aligned_cols=32  Identities=13%  Similarity=0.059  Sum_probs=27.1

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV  190 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~A  190 (227)
                      ++.+|||+|||+|.++..++    .+|+++|+++..
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~~   98 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR----NPVHCFDLASLD   98 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC----SCEEEEESSCSS
T ss_pred             CCCeEEEECCcCCHHHHHhh----ccEEEEeCCCCC
Confidence            56799999999999998762    479999999863

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.97  E-value=0.0012  Score=59.61  Aligned_cols=44  Identities=9%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCC--CEE-EEEeCCHHHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGC--SEV-HFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga--~~V-~aVEis~~Al~~~ar~N~  199 (227)
                      ..-+++|||||.|.+++.+...|.  ..| .++|+++.|+ +..+.|.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~-~ty~~N~   55 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIAN-KIYSKNF   55 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHH-HHHHHHH
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHH-HHHHHHC
Confidence            345899999999999999888773  667 8999999999 9999986

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.94  E-value=0.0004  Score=61.71  Aligned_cols=31  Identities=23%  Similarity=0.161  Sum_probs=27.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeC
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM  186 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEi  186 (227)
                      .++.+|||||||+|.++..++.+  .+|++||+
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~  111 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKG  111 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEec
Confidence            35689999999999999998887  36999999

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=96.93  E-value=0.0005  Score=61.14  Aligned_cols=54  Identities=17%  Similarity=-0.018  Sum_probs=42.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ...+|||+|||+|.++..++... ..+++++|+ +.++ +.+++      .. +++++.+|+++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~------~~-~v~~~~~d~~~  247 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVV-GNLTG------NE-NLNFVGGDMFK  247 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHH-SSCCC------CS-SEEEEECCTTT
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHH-hhccc------CC-CcEEEeCccCC
Confidence            45799999999999999998763 358999999 7777 66553      22 48999998865

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.90  E-value=0.0011  Score=59.89  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=44.2

Q ss_pred             CeEEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      -+++|||||.|.+++.+...|.  .-|.++|+++.|+ +..+.|..      ...++++|+.+.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~-~ty~~N~~------~~~~~~~DI~~~   60 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVAN-SVYKHNFP------ETNLLNRNIQQL   60 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCT------TSCEECCCGGGC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHH-HHHHHhCC------CCceeccccccC
Confidence            3799999999999999877775  5689999999998 89888853      124667777654

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=96.85  E-value=0.0015  Score=64.33  Aligned_cols=60  Identities=20%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             CCeEEEeccCCCHHHHHHHHcC------CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRG------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~G------a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ..+|+|||||.|.+++.+...|      ..-+++||+++.|+ +.-+.|.    -  ...+++.|+.+++...
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~-~Ty~~Nh----p--~~~~~~~di~~i~~~~  277 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFAC-QSLKYNH----P--QTEVRNEKADEFLALL  277 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHH-HHHHHHC----T--TSEEEESCHHHHHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHH-HHHHHHC----C--CCceecCcHHHhhhhh
Confidence            3579999999999998876554      35689999999998 8877663    2  3578899998876653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=96.80  E-value=0.0008  Score=63.15  Aligned_cols=52  Identities=8%  Similarity=-0.133  Sum_probs=41.0

Q ss_pred             CCCeEEEeccC------CCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSG------TGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsG------TG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||||||      ||..++.++..  ...+|++||+++.+. .          ...+++++++|+.+
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-~----------~~~rI~fv~GDa~d  275 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-V----------DELRIRTIQGDQND  275 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-G----------CBTTEEEEECCTTC
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-h----------cCCCcEEEEecccc
Confidence            56799999999      88888887753  346899999999763 1          12479999999865

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.74  E-value=0.0051  Score=55.02  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=55.2

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHH-hC--C-CCcEEEEEccHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEW-TG--F-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~-ng--l-~~~v~~i~gDa~~~L~~  221 (227)
                      ..++||=+|-|.|.+.-++++. +..+|+.||+|+..+ +++++-+.. ++  + +.|++++.+|+.++++.
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv-~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~  153 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVV-SFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ  153 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHH-HHHHhcCccccccccCCCcEEEEechHHHHHhh
Confidence            5679999999999999998874 568999999999999 999987643 22  2 35899999999998854

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.73  E-value=0.0042  Score=57.61  Aligned_cols=68  Identities=21%  Similarity=0.121  Sum_probs=55.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh---CC----CCcEEEEEccHHHHHHHHh
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT---GF----LDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n---gl----~~~v~~i~gDa~~~L~~~~  223 (227)
                      ++++||=+|.|.|.+.-++++....+|+.||+|+..+ +++++.+...   ..    .++++++.+|+.+++++..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VV-e~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVI-DGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHH-HHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHH-HHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh
Confidence            4689999999999999999886668999999999999 9999864211   11    1468999999999998653

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.29  E-value=0.016  Score=51.41  Aligned_cols=67  Identities=13%  Similarity=0.004  Sum_probs=52.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc----C--CCEEEEEeCCH--------------------------HHHHHHHHHHHHHh
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR----G--CSEVHFVEMDP--------------------------WVVSNVLIPNLEWT  202 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~----G--a~~V~aVEis~--------------------------~Al~~~ar~N~~~n  202 (227)
                      ....||++|++.|.-++.++..    |  ..+|+++|..+                          ..+ +.+++|++..
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~-~~ar~n~~~~  184 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSE-EEVRRNFRNY  184 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCH-HHHHHHHHHT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHH-HHHHHHHHHc
Confidence            4569999999999998876531    1  45799999641                          135 7789999999


Q ss_pred             CCC-CcEEEEEccHHHHHHHH
Q 027179          203 GFL-DVSSIHTVRVETFLERA  222 (227)
Q Consensus       203 gl~-~~v~~i~gDa~~~L~~~  222 (227)
                      |+. ++++++.||+.+.|..+
T Consensus       185 gl~~~~I~li~Gda~etL~~~  205 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTA  205 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTC
T ss_pred             CCCcCceEEEEeCHHHHHhhC
Confidence            994 78999999999877653

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=96.12  E-value=0.0084  Score=61.66  Aligned_cols=59  Identities=22%  Similarity=0.187  Sum_probs=47.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ..-+++|||||.|.+++.+-..|. .-|+++|+++.|+ +..+.|.     . ...++++|+.+++.
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~-~ty~~N~-----p-~~~~~~~DI~~l~~  598 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAA-QAFRLNN-----P-GSTVFTEDCNILLK  598 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHH-HHHHHHC-----T-TSEEECSCHHHHHH
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHH-HHHHHhC-----C-CCccccccHHHHhh
Confidence            345899999999999998877786 5789999999998 8887773     2 35688899877653

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.07  E-value=0.0045  Score=57.31  Aligned_cols=54  Identities=15%  Similarity=-0.007  Sum_probs=39.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+||||||..|.++-.++.+|+ +|++||..+-+-  .+.      . ..+|+++++|+++
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~--~l~------~-~~~V~~~~~d~~~  263 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQ--SLM------D-TGQVTWLREDGFK  263 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCH--HHH------T-TTCEEEECSCTTT
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcCh--hhc------c-CCCeEEEeCcccc
Confidence            4688999999999999999998885 899999765322  111      1 1357777777665

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.06  E-value=0.0024  Score=56.70  Aligned_cols=35  Identities=9%  Similarity=0.049  Sum_probs=25.1

Q ss_pred             CCCCeEEEeccCC------CHHHHHHHHcC-CCEEEEEeCCHH
Q 027179          154 LRPGRWLDLYSGT------GSVGIEAISRG-CSEVHFVEMDPW  189 (227)
Q Consensus       154 ~~~~~VLDLgsGT------G~isI~aas~G-a~~V~aVEis~~  189 (227)
                      .++.+|||||||+      |. .+.+...+ ..+|++||+++.
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC
Confidence            3578999999944      77 33333334 368999999986

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=95.82  E-value=0.0084  Score=52.10  Aligned_cols=68  Identities=7%  Similarity=-0.232  Sum_probs=47.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-------CC------CEEEEEeCCH---HHH----------HHHHHHHHHHh------
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-------GC------SEVHFVEMDP---WVV----------SNVLIPNLEWT------  202 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-------Ga------~~V~aVEis~---~Al----------~~~ar~N~~~n------  202 (227)
                      +..+|||+|+|+|.-.+.++..       +.      .+++++|.+|   +.+          .++++++++..      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999988775432       21      4899999987   332          03667776641      


Q ss_pred             ----CCC---CcEEEEEccHHHHHHHH
Q 027179          203 ----GFL---DVSSIHTVRVETFLERA  222 (227)
Q Consensus       203 ----gl~---~~v~~i~gDa~~~L~~~  222 (227)
                          .++   .+++++.+|+.+.+..+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~  166 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQL  166 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGS
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhc
Confidence                121   36889999999988764

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=95.74  E-value=0.02  Score=60.40  Aligned_cols=59  Identities=20%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      ...+++|||||.|.+++.+-..|. .-|+++|+++.|+ +..+.|.     . ...++++|+.+.+.
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~-~ty~~N~-----p-~~~~~~~DI~~l~~  909 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAA-QAFRLNN-----P-GTTVFTEDCNVLLK  909 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHH-HHHHHHC-----T-TSEEECSCHHHHHH
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHH-HHHHHhC-----C-CCcEeeccHHHHhH
Confidence            345899999999999999877786 5689999999998 8888773     2 24688889887654

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=95.59  E-value=0.0093  Score=55.33  Aligned_cols=44  Identities=11%  Similarity=-0.061  Sum_probs=37.2

Q ss_pred             CCeEEEeccCCCHHHHHHHHcC--CCE----EEEEeCCHHHHHHHHHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRG--CSE----VHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~G--a~~----V~aVEis~~Al~~~ar~N~~  200 (227)
                      .-+|+|||||.|.+++.+-..|  ..-    |.++|+++.|+ +.-+.|..
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~-~ty~~n~~   59 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAI-VSYVAIHS   59 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHH-HHHHHHHC
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHH-HHHHHHcC
Confidence            3589999999999999876666  344    89999999998 88888875

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=94.44  E-value=0.023  Score=51.54  Aligned_cols=36  Identities=19%  Similarity=0.089  Sum_probs=30.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPW  189 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~  189 (227)
                      ..+.+||||||++|.++-.++. .|+.+|+|+|+-..
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            3567999999999999997665 58889999999765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=94.31  E-value=0.028  Score=49.61  Aligned_cols=60  Identities=17%  Similarity=0.122  Sum_probs=41.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc-cHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVE  216 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g-Da~  216 (227)
                      .++.+|+||||++|.++-.++. .|+.+|+|+|+-..-. +. =...+..|. +.++|+++ |++
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-e~-P~~~~s~gw-n~v~fk~gvDv~  138 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-EE-PVPMSTYGW-NIVKLMSGKDVF  138 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS-CC-CCCCCCTTT-TSEEEECSCCGG
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc-cC-cchhhhcCc-CceEEEecccee
Confidence            4667999999999999997665 5888999999976533 10 001112333 45888888 764

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=94.27  E-value=0.03  Score=50.00  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=29.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPW  189 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~  189 (227)
                      .++.+|||||||.|.++..++. .++..|+++|+...
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            3567999999999999998875 47778999999643

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=94.26  E-value=0.028  Score=50.00  Aligned_cols=34  Identities=26%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCC
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMD  187 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis  187 (227)
                      .++.+|||||||.|.++-.++.+ ++..|+++|+.
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG  107 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG  107 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEe
Confidence            35679999999999999987765 67788888876

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=92.55  E-value=0.079  Score=47.65  Aligned_cols=35  Identities=26%  Similarity=0.201  Sum_probs=30.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDP  188 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~  188 (227)
                      .++.+||||||+.|.++-.++.+ ++..|+++|+..
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            46789999999999999998864 777899999864

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=91.65  E-value=0.034  Score=43.60  Aligned_cols=44  Identities=9%  Similarity=-0.074  Sum_probs=33.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+|||++||+              | .||+++.++ +.++++...     +++++++|+.+.
T Consensus        11 ~~g~~vL~~~~g~--------------v-~vD~s~~ml-~~a~~~~~~-----~~~~~~~d~~~~   54 (176)
T 2ld4_A           11 SAGQFVAVVWDKS--------------S-PVEALKGLV-DKLQALTGN-----EGRVSVENIKQL   54 (176)
T ss_dssp             CTTSEEEEEECTT--------------S-CHHHHHHHH-HHHHHHTTT-----TSEEEEEEGGGG
T ss_pred             CCCCEEEEecCCc--------------e-eeeCCHHHH-HHHHHhccc-----CcEEEEechhcC
Confidence            4678999999996              2 289999999 898877532     367888887653

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=88.76  E-value=1.4  Score=37.98  Aligned_cols=59  Identities=19%  Similarity=0.087  Sum_probs=45.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++| ||.+.+    ..|+ +|+.+|.+++.+ +.+.+.++..|.  ++.++++|+.+
T Consensus         5 L~gKvalVTGas~G-IG~aiA~~la~~Ga-~Vv~~~~~~~~~-~~~~~~i~~~g~--~~~~~~~Dvt~   67 (254)
T 4fn4_A            5 LKNKVVIVTGAGSG-IGRAIAKKFALNDS-IVVAVELLEDRL-NQIVQELRGMGK--EVLGVKADVSK   67 (254)
T ss_dssp             GTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCC
Confidence            57888898887665 455444    5686 799999999998 777777777764  58899999854

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=87.72  E-value=1.3  Score=39.69  Aligned_cols=42  Identities=14%  Similarity=0.090  Sum_probs=32.1

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar  196 (227)
                      .++++||-+|||. |.+++.+|+ .|+.+|+++|.+++.+ +.++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~  227 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL-KLLS  227 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHH
Confidence            4678999999754 555555555 5877899999999887 7765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=85.75  E-value=1.4  Score=38.89  Aligned_cols=43  Identities=14%  Similarity=0.133  Sum_probs=31.7

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++++||-+|+|. |.+.+.+|+ .|+.+|+++|.+++.. +.+++
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~-~~a~~  233 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQ  233 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH
Confidence            4678999998754 444555554 4877899999999887 77653

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=84.48  E-value=1.5  Score=39.01  Aligned_cols=43  Identities=12%  Similarity=0.027  Sum_probs=31.2

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++++||-.|+|. |.+++.+|+ .|+.+|+++|.+++.+ +.+++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~-~~a~~  228 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKA  228 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH-HHHHH
Confidence            4678999888643 444444454 5887899999999987 77753

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=83.81  E-value=3.5  Score=37.93  Aligned_cols=52  Identities=21%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             CCeEEEeccCCCHHHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179          156 PGRWLDLYSGTGSVGIEAISR--------GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~--------Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i  211 (227)
                      +-.++++|+|+|.+..-++..        ...+++.||+|+.-. +.-++++...   ++++++
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr-~~Q~~~L~~~---~~v~W~  140 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR-QKQQTLLAGI---RNIHWH  140 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH-HHHHHHSTTC---SSEEEE
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH-HHHHHHhcCC---CCeEEe
Confidence            347999999999998766531        234899999999876 5544443222   246554

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=83.45  E-value=3.4  Score=34.93  Aligned_cols=79  Identities=10%  Similarity=0.046  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeC-CHHHHHHHHHHHHHHh
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEM-DPWVVSNVLIPNLEWT  202 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEi-s~~Al~~~ar~N~~~n  202 (227)
                      .+++-++..+...++.+..      ...++++|=-|+ +|.||.+++    ..|+ +|+.++. +++.+ +...+.+...
T Consensus         7 ~~~~~~~~~~n~~~~~mm~------~~~~k~~lVTGa-s~GIG~aia~~la~~G~-~V~~~~~~~~~~~-~~~~~~~~~~   77 (280)
T 4da9_A            7 HSSGVDLGTENLYFQSMMT------QKARPVAIVTGG-RRGIGLGIARALAASGF-DIAITGIGDAEGV-APVIAELSGL   77 (280)
T ss_dssp             ----------------CCS------CCCCCEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESCCHHHH-HHHHHHHHHT
T ss_pred             Ccccccccccchhhhhhhh------ccCCCEEEEecC-CCHHHHHHHHHHHHCCC-eEEEEeCCCHHHH-HHHHHHHHhc
Confidence            3555566555554443221      246778887775 456666554    4676 7999995 77776 6666666655


Q ss_pred             CCCCcEEEEEccHHH
Q 027179          203 GFLDVSSIHTVRVET  217 (227)
Q Consensus       203 gl~~~v~~i~gDa~~  217 (227)
                      +.  ++.++.+|+.+
T Consensus        78 ~~--~~~~~~~Dv~d   90 (280)
T 4da9_A           78 GA--RVIFLRADLAD   90 (280)
T ss_dssp             TC--CEEEEECCTTS
T ss_pred             CC--cEEEEEecCCC
Confidence            53  68999999854

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=83.17  E-value=2.1  Score=37.55  Aligned_cols=42  Identities=14%  Similarity=0.098  Sum_probs=30.5

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar  196 (227)
                      .++++||-.|+|. |.+.+.+|+ .|+.+|+++|.+++.. +.++
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~  213 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAK  213 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHH
Confidence            4678999998653 444444444 5877899999999887 7765

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=81.65  E-value=2.4  Score=38.73  Aligned_cols=46  Identities=15%  Similarity=0.149  Sum_probs=29.8

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRV  215 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa  215 (227)
                      ..+|+|||||+|..++.+++.             .+ +.+++.....+.. ..++++.-|.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~-------------ii-~~i~~~~~~~~~~~pe~~v~~nDL   99 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDF-------------IV-KHISKRFDAAGIDPPEFTAFFSDL   99 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHH-------------HH-HHHHHHHHHTTCCCCCEEEEEEEC
T ss_pred             ceEEEecCCCCChhHHHHHHH-------------HH-HHHHHHHhhcCCCCCceeEEecCC
Confidence            468999999999999987653             33 4444444443322 2466666554

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=81.39  E-value=6.8  Score=31.97  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=43.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..++++|=.|+ +|.+|.+++    ..|+ +|+.++.+++.+ +.+.+.++..+  .++.++.+|+.+
T Consensus         7 ~~~k~vlITGa-s~giG~~~a~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~   69 (253)
T 3qiv_A            7 FENKVGIVTGS-GGGIGQAYAEALAREGA-AVVVADINAEAA-EAVAKQIVADG--GTAISVAVDVSD   69 (253)
T ss_dssp             TTTCEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT--CEEEEEECCTTS
T ss_pred             cCCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcC--CcEEEEEccCCC
Confidence            46778887775 566676665    4576 799999999887 77776666554  368899999865

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=81.17  E-value=6.9  Score=33.38  Aligned_cols=59  Identities=14%  Similarity=0.174  Sum_probs=43.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..++++|=.|++ |.||.+++    .+|+ +|+.++.+++.+ +.+.+.++..+.  ++.++.+|+.+
T Consensus        29 l~gk~vlVTGas-~gIG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~--~~~~~~~Dv~d   91 (301)
T 3tjr_A           29 FDGRAAVVTGGA-SGIGLATATEFARRGA-RLVLSDVDQPAL-EQAVNGLRGQGF--DAHGVVCDVRH   91 (301)
T ss_dssp             STTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTC
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEccCCC
Confidence            467788877765 56676655    4676 799999999988 777776666553  58899999865

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=80.92  E-value=8.6  Score=31.94  Aligned_cols=61  Identities=13%  Similarity=0.000  Sum_probs=42.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..++++|=-|++ |.||.+++    ..|+ +|+.++.+++.+ +.+.+.+....-..++.++.+|+.+
T Consensus         6 l~~k~~lVTGas-~GIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dv~~   70 (265)
T 3lf2_A            6 LSEAVAVVTGGS-SGIGLATVELLLEAGA-AVAFCARDGERL-RAAESALRQRFPGARLFASVCDVLD   70 (265)
T ss_dssp             CTTCEEEEETCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHSTTCCEEEEECCTTC
T ss_pred             cCCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhcCCceEEEEeCCCCC
Confidence            567788888855 55666655    4676 799999999887 6666666552212358899999864

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=80.86  E-value=7.2  Score=33.68  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=45.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..+++||=-|++ |.||.+++    .+|+ +|++++.+++.+ +.+.+.++..+...++.++.+|+.+
T Consensus         6 l~~k~vlVTGas-~gIG~~la~~l~~~G~-~Vv~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~   70 (319)
T 3ioy_A            6 FAGRTAFVTGGA-NGVGIGLVRQLLNQGC-KVAIADIRQDSI-DKALATLEAEGSGPEVMGVQLDVAS   70 (319)
T ss_dssp             CTTCEEEEETTT-STHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEECCTTC
T ss_pred             CCCCEEEEcCCc-hHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCeEEEEECCCCC
Confidence            467788888865 55666655    4676 799999999987 7777777666644468999999854

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=80.66  E-value=7.5  Score=32.03  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=41.7

Q ss_pred             CCCCeEEEecc-CCCHHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYS-GTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgs-GTG~isI~a----as~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..++++|=.|+ |+| ||.++    +..|+ +|+.++.+++.+ +.+.+.++..+- .++.++.+|+.+
T Consensus        20 l~~k~vlITGasg~G-IG~~~a~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~Dl~~   84 (266)
T 3o38_A           20 LKGKVVLVTAAAGTG-IGSTTARRALLEGA-DVVISDYHERRL-GETRDQLADLGL-GRVEAVVCDVTS   84 (266)
T ss_dssp             TTTCEEEESSCSSSS-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTCS-SCEEEEECCTTC
T ss_pred             CCCCEEEEECCCCCc-hHHHHHHHHHHCCC-EEEEecCCHHHH-HHHHHHHHhcCC-CceEEEEeCCCC
Confidence            45677887776 444 45444    45676 799999999887 666666654442 469999999864

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=80.62  E-value=8.9  Score=31.83  Aligned_cols=59  Identities=10%  Similarity=0.039  Sum_probs=43.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..++++|=-|++. .||.+++    ..|+ +|+.++.+++.+ +.+.+.+...+  .++.++.+|+.+
T Consensus         9 l~~k~vlVTGas~-gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~   71 (264)
T 3ucx_A            9 LTDKVVVISGVGP-ALGTTLARRCAEQGA-DLVLAARTVERL-EDVAKQVTDTG--RRALSVGTDITD   71 (264)
T ss_dssp             TTTCEEEEESCCT-THHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCcEEEEECCCc-HHHHHHHHHHHHCcC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCC
Confidence            4677888888655 4565544    4676 799999999887 77777776665  368999999864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=80.56  E-value=3.3  Score=35.86  Aligned_cols=42  Identities=19%  Similarity=0.097  Sum_probs=31.5

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++++||-.|+|. |.+.+.+++ .|+ +|+++|.+++.. +.+++
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~  208 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKL-NLARR  208 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHH
Confidence            4678899888754 566666555 577 899999999887 77654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=80.25  E-value=4  Score=35.62  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=29.7

Q ss_pred             CCCCeEEEeccCCCHHHHH---HHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIE---AIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~---aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++++||=.|+  |.+|+.   +|+ .|+.+|+++|.+++.. +.+++
T Consensus       165 ~~g~~VlV~Ga--G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~  209 (352)
T 3fpc_A          165 KLGDTVCVIGI--GPVGLMSVAGANHLGAGRIFAVGSRKHCC-DIALE  209 (352)
T ss_dssp             CTTCCEEEECC--SHHHHHHHHHHHTTTCSSEEEECCCHHHH-HHHHH
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH
Confidence            46788888876  455544   444 4777899999999887 77654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=80.23  E-value=7.1  Score=31.72  Aligned_cols=59  Identities=15%  Similarity=0.123  Sum_probs=43.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..++++|=.| |+|.+|.+++    ..|+ +|+.++.+++.. +.+.+.++..+.  ++.++.+|+.+
T Consensus         3 l~~k~vlITG-as~gIG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~D~~~   65 (247)
T 3lyl_A            3 LNEKVALVTG-ASRGIGFEVAHALASKGA-TVVGTATSQASA-EKFENSMKEKGF--KARGLVLNISD   65 (247)
T ss_dssp             TTTCEEEESS-CSSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHHHHTTC--CEEEEECCTTC
T ss_pred             CCCCEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--ceEEEEecCCC
Confidence            3566777777 5566776655    4676 799999999887 776666666653  58999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d2ifta1	183	c.66.1.46 (A:11-193) Putative methylase HI0767 {Ha	2e-13
d2fhpa1	182	c.66.1.46 (A:1-182) Putative methylase EF2452 {Ent	3e-11
d2fpoa1	183	c.66.1.46 (A:10-192) Methylase YhhF {Escherichia c	4e-11
d1ws6a1	171	c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {T	3e-07
d2esra1	152	c.66.1.46 (A:28-179) Putative methyltransferase SP	5e-07
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	0.001
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.002
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	0.004

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} Length = 183

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++ G  R +KL       +RP  + VK   F+ L         +     LD ++G+GS
Sbjct: 3   VRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMP------YIHQSECLDGFAGSGS 56

Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW 201
           +G EA+SR   +V F+E+D  V + +       
Sbjct: 57  LGFEALSRQAKKVTFLELDKTVANQLKKNLQTL 89

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} Length = 182

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++V+ G+   ++L +  G + RP  + VK + F+++            G  LDLYSG+G 
Sbjct: 1   MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGP------YFDGGMALDLYSGSGG 54

Query: 169 VGIEAISRGCSEVHFVEMDPWV 190
           + IEA+SRG  +   +E +   
Sbjct: 55  LAIEAVSRGMDKSICIEKNFAA 76

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

 Score = 57.6 bits (138), Expect = 4e-11
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
           ++++GG+ R +KL  P    +RP  + V+   F+           +   + LD ++G+G+
Sbjct: 3   IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNW------LAPVIVDAQCLDCFAGSGA 56

Query: 169 VGIEAISRGCSEVHFVEMDPW 189
           +G+EA+SR  +    +EMD  
Sbjct: 57  LGLEALSRYAAGATLIEMDRA 77

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
           ++++LGGKAR   L  P     RP    ++ A FD L+         R GR+LD ++G+G
Sbjct: 1   VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLR-----LRYPRRGRFLDPFAGSG 53

Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
           +VG+EA S G   V   +    
Sbjct: 54  AVGLEAASEGWEAVLVEKDPEA 75

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195
           V+GA F+++            GR LDL++G+G + IEA+SRG S    VE +    + + 
Sbjct: 1   VRGAIFNMIGP------YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ 54

Query: 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
              +        + +             +F  
Sbjct: 55  DNIIMTKAENRFTLLKMEAERAIDCLTGRFDL 86

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192
           RP + L+L+  TG   + A + G      V+     + 
Sbjct: 132 RPLKVLNLFGYTGVASLVAAAAGAEVT-HVDASKKAIG 168

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205
             +D  +G G +   +   G   V   ++DP  +      N     F+
Sbjct: 51  SVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCGGVNFM 97

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191
           +      DL +GTG +   A+  G  EV  VE+D   V
Sbjct: 45  IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.93
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.92
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.91
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.88
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.79
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.75
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.65
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.51
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.46
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.45
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.45
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.45
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.41
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.4
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.35
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.34
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.32
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.29
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.13
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.13
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.12
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.1
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.09
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.06
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.03
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.01
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.0
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.98
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.97
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.96
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.94
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.93
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.92
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.9
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.89
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.88
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.85
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.82
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.79
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.76
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.73
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.71
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.71
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.7
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.69
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.68
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.65
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.65
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.63
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.63
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.6
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.58
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.57
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.54
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.54
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.52
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.5
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.47
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.47
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.46
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.46
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.45
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.45
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.44
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.35
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.3
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.27
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.24
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.23
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.17
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.1
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.07
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.0
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.99
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.98
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.93
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.93
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.87
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.87
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.83
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.82
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.66
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.45
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.4
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.39
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.38
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.37
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.34
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.31
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.27
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.26
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.25
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.23
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.09
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.81
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.78
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.73
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.56
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.36
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.12
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.85
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	94.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.19
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	92.94
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.21
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.76
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	90.7
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.43
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.3
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.0
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.56
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.38
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.32
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.03
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.99
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.9
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.77
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.33
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.54
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.35
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.67
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.12
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.73
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.68
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	85.28
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.97
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	84.8
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	83.79
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	83.26
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.26
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.04
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	81.55
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	80.95
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	80.61
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	80.61
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	80.15

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.93  E-value=5.3e-26  Score=188.49  Aligned_cols=108  Identities=27%  Similarity=0.415  Sum_probs=101.8

Q ss_pred             EEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCH
Q 027179          109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP  188 (227)
Q Consensus       109 L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~  188 (227)
                      |+|++|+|+|++|..|++..+|||++.++|++|++|...      .++.+|||||||||++|++++++|+.+|++||.|+
T Consensus         1 mrIi~G~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~------~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~   74 (182)
T d2fhpa1           1 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNF   74 (182)
T ss_dssp             CBCCSSTTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEeccccCCCEecCCCCCCcCcCcHHHHHHHHHHHHHh------cCCCEEEEcccccccccceeeecchhHHHHHHHHH
Confidence            689999999999999999999999999999999999753      57899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179          189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       189 ~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~  223 (227)
                      .++ +.+++|++.++..++++++++|++++++.+.
T Consensus        75 ~a~-~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~  108 (182)
T d2fhpa1          75 AAL-KVIKENIAITKEPEKFEVRKMDANRALEQFY  108 (182)
T ss_dssp             HHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHH-HHHHHHhhhhhcccccccccccchhhhhhhc
Confidence            999 9999999999998889999999999998753

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.3e-25  Score=184.19  Aligned_cols=106  Identities=28%  Similarity=0.470  Sum_probs=93.6

Q ss_pred             eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCC
Q 027179          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD  187 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis  187 (227)
                      .|+|++|+|+|++|.+|++..+|||++.+++++|++|...      .++.+|||||||||++|++++++|+.+|++||.|
T Consensus         2 ~mrIi~G~~kg~~l~~~~~~~~RPt~~~vre~lfn~l~~~------~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~   75 (183)
T d2fpoa1           2 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMD   75 (183)
T ss_dssp             EEECCSGGGTTCEEECCCC------CHHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC
T ss_pred             CeEEEecccCCCEecCCCCCCcCcCcHHHHHHHHhhhhcc------cchhhhhhhhccccceeeeEEecCcceeEEEEEe
Confidence            5899999999999999999999999999999999999764      5788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179          188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER  221 (227)
Q Consensus       188 ~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~  221 (227)
                      +.++ +.+++|++.++.. +++++++|+++++..
T Consensus        76 ~~a~-~~~k~N~~~~~~~-~~~ii~~d~~~~l~~  107 (183)
T d2fpoa1          76 RAVS-QQLIKNLATLKAG-NARVVNSNAMSFLAQ  107 (183)
T ss_dssp             HHHH-HHHHHHHHHTTCC-SEEEECSCHHHHHSS
T ss_pred             echh-hHHHHHHhhcccc-ceeeeeecccccccc
Confidence            9999 9999999999885 589999999998854

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.91  E-value=9.9e-25  Score=180.31  Aligned_cols=107  Identities=29%  Similarity=0.414  Sum_probs=90.5

Q ss_pred             eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCC
Q 027179          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD  187 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis  187 (227)
                      .|||++|.|+|++|.+|.+..+|||++.++|++|+++...      .++.+|||||||||++|+||+++||.+|++||.|
T Consensus         2 ~mrIi~G~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~------~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~   75 (183)
T d2ifta1           2 EVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPY------IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD   75 (183)
T ss_dssp             EEECCSSTTTTCEEECC---------CHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC
T ss_pred             ceEEEccccCCCEecCCCCCCcCcCcHHHHHHHHHHhhhh------cccceEeecccCccceeeeeeeecceeeEEeecc
Confidence            6899999999999999999999999999999999999764      4788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCC-cEEEEEccHHHHHHH
Q 027179          188 PWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLER  221 (227)
Q Consensus       188 ~~Al~~~ar~N~~~ngl~~-~v~~i~gDa~~~L~~  221 (227)
                      ..++ +.+++|++..++.+ ...+++.|+.+++..
T Consensus        76 ~~a~-~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~  109 (183)
T d2ifta1          76 KTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQ  109 (183)
T ss_dssp             HHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTS
T ss_pred             cchh-hhHhhHHhhhcccccccccccccccccccc
Confidence            9999 99999999998864 588999999887753

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=7.5e-23  Score=167.42  Aligned_cols=102  Identities=40%  Similarity=0.590  Sum_probs=89.2

Q ss_pred             eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCC
Q 027179          108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD  187 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis  187 (227)
                      ||+|++|+|+|++|.+|.+  .|||++.++|++|+|+..+.     .++.+|||+|||||++|++++++|+ +|++||.|
T Consensus         1 ~~ri~~g~~kg~~l~~~~~--~Rpt~~~v~e~lf~~l~~~~-----~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~   72 (171)
T d1ws6a1           1 VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKD   72 (171)
T ss_dssp             CEECCSGGGTTCEECCCTT--CCCCCHHHHHHHHHHHHHHC-----TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCC
T ss_pred             CEEEecccccCCEeCCCCC--CCCCcHHHHHHHHHHhhccc-----cCCCeEEEeccccchhhhhhhhccc-hhhhcccC
Confidence            6899999999999999875  79999999999999998653     4788999999999999999999997 79999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       188 ~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      +.++ +.+++|++.+++.+++  +..|+..++.
T Consensus        73 ~~a~-~~~~~N~~~~~~~~~v--~~~~~d~~~~  102 (171)
T d1ws6a1          73 PEAV-RLLKENVRRTGLGARV--VALPVEVFLP  102 (171)
T ss_dssp             HHHH-HHHHHHHHHHTCCCEE--ECSCHHHHHH
T ss_pred             HHHH-hhhhHHHHhhccccce--eeeehhcccc
Confidence            9999 9999999999997654  4455544443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.7e-20  Score=163.69  Aligned_cols=154  Identities=19%  Similarity=0.114  Sum_probs=118.0

Q ss_pred             cCCCCCChHHHH-HHHHHcCCCCccccCCCCCcccccccCCCCcccccc-ccccccccccceEEEEecc--cCCeeecCC
Q 027179           49 KSGTGLTSEDKK-ELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSD-EKSQEERTTHRLLQVLGGK--ARRKKLLSP  124 (227)
Q Consensus        49 ~~~~~~~~~~~~-~~~~~~G~~~~~~~~~~l~~~er~~~~~~~~~~~~~-~~~~~~~~~~~~L~ii~G~--~~Gr~L~v~  124 (227)
                      ++++.-|..|.. .+-+..|++..++....    ++.    -..++... .++..+|..+++||||.|+  |+|++|.+.
T Consensus        13 l~~~~~p~~da~~ll~~~l~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~~~~~~v~   84 (274)
T d2b3ta1          13 LQASESPRRDAEILLEHVTGRGRTFILAFG----ETQ----LTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVS   84 (274)
T ss_dssp             TTTSSCHHHHHHHHHHHHHTCCHHHHHHTT----TCB----CCHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECC
T ss_pred             HhcCCCHHHHHHHHHHHHhCcCHHHHhhCC----CCC----CCHHHHHHHHHHHHHHhcCcChhhhcCcEEEeeeEEEEe
Confidence            455566777877 44467788764432211    111    12223333 4467788889999999995  899999998


Q ss_pred             CCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          125 KGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       125 ~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      ++. +|||+||.+++.++....        ..+.+|||||||||++++.+++. ...+|+++|+|+.|+ ++|++|++.+
T Consensus        85 ~~VlIPRpeTE~lv~~~l~~~~--------~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al-~~A~~Na~~~  155 (274)
T d2b3ta1          85 PATLIPRPDTECLVEQALARLP--------EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV-SLAQRNAQHL  155 (274)
T ss_dssp             TTSCCCCTTHHHHHHHHHHHSC--------SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH-HHHHHHHHHH
T ss_pred             ccccccccchhhhhhhHhhhhc--------ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHH-hHHHHHHHHh
Confidence            775 899999999988776543        35678999999999999998874 457999999999999 9999999999


Q ss_pred             CCCCcEEEEEccHHHHHH
Q 027179          203 GFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       203 gl~~~v~~i~gDa~~~L~  220 (227)
                      ++. +++++++|+++.+.
T Consensus       156 ~~~-~v~~~~~d~~~~~~  172 (274)
T d2b3ta1         156 AIK-NIHILQSDWFSALA  172 (274)
T ss_dssp             TCC-SEEEECCSTTGGGT
T ss_pred             Ccc-cceeeecccccccC
Confidence            995 69999999987653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.75  E-value=1.5e-18  Score=138.63  Aligned_cols=80  Identities=29%  Similarity=0.456  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      |++++|+||+..      .++++|||||||||++|++++++|+.+|++||.|+.|+ +.+++|++.+++.++++++++|+
T Consensus         1 Vre~~fn~l~~~------~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~-~~~~~n~~~~~~~~~~~ii~~D~   73 (152)
T d2esra1           1 VRGAIFNMIGPY------FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLKMEA   73 (152)
T ss_dssp             CHHHHHHHHCSC------CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEECSCH
T ss_pred             CcHHHHHHHHhh------CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhh-hhhhhhhhhcccccchhhhcccc
Confidence            578999999864      68899999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHH
Q 027179          216 ETFLERA  222 (227)
Q Consensus       216 ~~~L~~~  222 (227)
                      .++++..
T Consensus        74 ~~~l~~~   80 (152)
T d2esra1          74 ERAIDCL   80 (152)
T ss_dssp             HHHHHHB
T ss_pred             ccccccc
Confidence            9988653

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=2.1e-18  Score=151.30  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=117.8

Q ss_pred             ChHHHH-HHHHHcCCCCccccCCCCCcccccccCCCCcccccc-ccccccccccceEEEEecc--cCCeeecCCCCC-CC
Q 027179           55 TSEDKK-ELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSD-EKSQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DV  129 (227)
Q Consensus        55 ~~~~~~-~~~~~~G~~~~~~~~~~l~~~er~~~~~~~~~~~~~-~~~~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~  129 (227)
                      |..|.. .+.+..|++........     +    .-+.++..+ .+...+|..+.+++||.|+  |+|++|.+.++. +|
T Consensus        21 ~~lda~lll~~~l~~~~~~l~~~~-----~----~l~~~~~~~~~~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~~vlIP   91 (271)
T d1nv8a_          21 SVLEVLLIVSRVLGIRKEDLFLKD-----L----GVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVP   91 (271)
T ss_dssp             HHHHHHHHHHHHHTCCGGGGCCSS-----C----CCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCC
T ss_pred             HHHHHHHHHHHHHCcCHHHHhhCC-----C----CCCHHHHHHHHHHHHHhhCCCChhhhcCcEEEeeeEEEEecCccCc
Confidence            445666 55566688875443211     1    122233333 4457778889999999995  899999997775 89


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 027179          130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (227)
Q Consensus       130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~  209 (227)
                      ||+||.+++.+++++...       ...+++|+|||+|++++.++.....+|+++|+|+.|+ ++|++|++++++.+++.
T Consensus        92 RpeTE~lv~~~~~~~~~~-------~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al-~~A~~Na~~~~~~~~~~  163 (271)
T d1nv8a_          92 RPETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAV-EIARKNAERHGVSDRFF  163 (271)
T ss_dssp             CTTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHH-HHHHHHHHHTTCTTSEE
T ss_pred             hhhhhhhhhhhhhhhccc-------cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHH-HHHHHHHHHcCCCceeE
Confidence            999999999998877653       3468999999999999998877667899999999999 99999999999999999


Q ss_pred             EEEccHHHHHH
Q 027179          210 IHTVRVETFLE  220 (227)
Q Consensus       210 ~i~gDa~~~L~  220 (227)
                      ++++|+++.+.
T Consensus       164 i~~~~~~~~~~  174 (271)
T d1nv8a_         164 VRKGEFLEPFK  174 (271)
T ss_dssp             EEESSTTGGGG
T ss_pred             Eeecccccccc
Confidence            99999987654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=2.7e-16  Score=128.13  Aligned_cols=88  Identities=18%  Similarity=0.150  Sum_probs=78.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      ..|.||.+.++..+++++..       .++++|||+|||||.+++++|..+ .+|++||+++.++ +.+++|++.+++.+
T Consensus        12 ~~~~~t~~eir~~il~~l~~-------~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l-~~a~~n~~~~gl~~   82 (186)
T d1l3ia_          12 SVPGPTAMEVRCLIMCLAEP-------GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAI-STTEMNLQRHGLGD   82 (186)
T ss_dssp             TSCCCCCHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHTTCCT
T ss_pred             CCCCCChHHHHHHHHHhcCC-------CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHH-HHHHHHHHHcCCCc
Confidence            35789999999999998865       478999999999999999988764 5899999999999 99999999999988


Q ss_pred             cEEEEEccHHHHHHHHh
Q 027179          207 VSSIHTVRVETFLERAE  223 (227)
Q Consensus       207 ~v~~i~gDa~~~L~~~~  223 (227)
                      +++++++|+.+.+...+
T Consensus        83 ~v~~~~gda~~~~~~~~   99 (186)
T d1l3ia_          83 NVTLMEGDAPEALCKIP   99 (186)
T ss_dssp             TEEEEESCHHHHHTTSC
T ss_pred             ceEEEECchhhcccccC
Confidence            99999999998765433

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.51  E-value=6.1e-14  Score=124.83  Aligned_cols=100  Identities=21%  Similarity=0.185  Sum_probs=81.3

Q ss_pred             CCeeecCCCC----CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Q 027179          117 RRKKLLSPKG----MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS  192 (227)
Q Consensus       117 ~Gr~L~v~~g----~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~  192 (227)
                      .|.+|.+...    .+..++....+..+.+.+...      .++.+|||||||||.++++++..|+ +|++||.|+.|+ 
T Consensus        96 ~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~------~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al-  167 (309)
T d2igta1          96 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETA------DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAI-  167 (309)
T ss_dssp             TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHS------SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHH-
T ss_pred             eEEEEEEeccCCCccccccchhHHHHHHHHHHhhc------cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHH-
Confidence            3555655332    245566777777666666543      4678999999999999999998887 799999999999 


Q ss_pred             HHHHHHHHHhCCCC-cEEEEEccHHHHHHHHhh
Q 027179          193 NVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       193 ~~ar~N~~~ngl~~-~v~~i~gDa~~~L~~~~~  224 (227)
                      +++++|++.|++.+ +++++++|+++++++..+
T Consensus       168 ~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~  200 (309)
T d2igta1         168 GWAKENQVLAGLEQAPIRWICEDAMKFIQREER  200 (309)
T ss_dssp             HHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH
T ss_pred             HHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhh
Confidence            99999999999975 699999999999987654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=8.8e-14  Score=115.65  Aligned_cols=83  Identities=27%  Similarity=0.185  Sum_probs=68.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      ..+|+..++..+...+...+    +.+|++|||+|||||.++++++.+|+.+|++||+|++++ +.+++|++.+++  +.
T Consensus        24 qy~Tp~~~a~~~~~~~~~~~----dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~-~~a~~N~~~~~~--~~   96 (201)
T d1wy7a1          24 QYRTPGNAASELLWLAYSLG----DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKG--KF   96 (201)
T ss_dssp             CCCCCHHHHHHHHHHHHHTT----SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTT--SE
T ss_pred             cCCCCHHHHHHHHHHHHhcC----CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHH-HHHHHHHHHcCC--Cc
Confidence            45777777766554444333    368899999999999999999999988999999999999 999999999986  47


Q ss_pred             EEEEccHHHH
Q 027179          209 SIHTVRVETF  218 (227)
Q Consensus       209 ~~i~gDa~~~  218 (227)
                      +++++|+.++
T Consensus        97 ~~~~~d~~~~  106 (201)
T d1wy7a1          97 KVFIGDVSEF  106 (201)
T ss_dssp             EEEESCGGGC
T ss_pred             eEEECchhhh
Confidence            8999998654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=6.1e-14  Score=121.15  Aligned_cols=81  Identities=23%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      |.+++|||.++.+++-..+         .++++|||+|||||.+++.+++.|+ +|++||+|+.|+ +.+++|++.|++.
T Consensus       100 GTG~H~TT~l~l~~l~~~~---------~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av-~~A~~na~~n~~~  168 (254)
T d2nxca1         100 GTGHHETTRLALKALARHL---------RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-PQAEANAKRNGVR  168 (254)
T ss_dssp             --CCSHHHHHHHHHHHHHC---------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-HHHHHHHHHTTCC
T ss_pred             CccccchhhHHHHHHHhhc---------CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHH-HHHHHHHHHcCCc
Confidence            4579999998887764332         4688999999999999999988886 799999999999 9999999999995


Q ss_pred             CcEEEEEccHHHHH
Q 027179          206 DVSSIHTVRVETFL  219 (227)
Q Consensus       206 ~~v~~i~gDa~~~L  219 (227)
                        ++++++|+.+.+
T Consensus       169 --~~~~~~d~~~~~  180 (254)
T d2nxca1         169 --PRFLEGSLEAAL  180 (254)
T ss_dssp             --CEEEESCHHHHG
T ss_pred             --eeEEeccccccc
Confidence              578999988754

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=2e-13  Score=120.82  Aligned_cols=86  Identities=19%  Similarity=0.121  Sum_probs=72.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      +..+.....+..+    ....     .++++|||+|||||.+++++++.|+.+|++||+|+.++ +++++|++.||+.++
T Consensus       127 G~flDqr~~r~~~----~~~~-----~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al-~~a~~N~~~ngl~~~  196 (324)
T d2as0a2         127 GFFLDQRENRLAL----EKWV-----QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDR  196 (324)
T ss_dssp             CCCSTTHHHHHHH----GGGC-----CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGG
T ss_pred             CcccchhhHHHHH----Hhhc-----CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHH-HHHHHHHHHcCCCcc
Confidence            4556666555444    2221     35789999999999999999999999999999999999 999999999999888


Q ss_pred             EEEEEccHHHHHHHHh
Q 027179          208 SSIHTVRVETFLERAE  223 (227)
Q Consensus       208 v~~i~gDa~~~L~~~~  223 (227)
                      ++++++|+++++..+.
T Consensus       197 ~~~~~~d~~~~~~~~~  212 (324)
T d2as0a2         197 MKFIVGSAFEEMEKLQ  212 (324)
T ss_dssp             EEEEESCHHHHHHHHH
T ss_pred             ceeeechhhhhhHHHH
Confidence            9999999999987764

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=2.3e-13  Score=111.04  Aligned_cols=103  Identities=13%  Similarity=0.118  Sum_probs=81.1

Q ss_pred             eEEEEecccCCeeecC--CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEe
Q 027179          108 LLQVLGGKARRKKLLS--PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE  185 (227)
Q Consensus       108 ~L~ii~G~~~Gr~L~v--~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVE  185 (227)
                      -.+.+.+.++|+.+.+  ++|.+.+...+...+.+++.+..       .++++|||+|||+|.+++.++..+ .+|+++|
T Consensus        10 ~~~~~~~~~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~-------~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD   81 (194)
T d1dusa_          10 DVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV-------DKDDDILDLGCGYGVIGIALADEV-KSTTMAD   81 (194)
T ss_dssp             CEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC-------CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEE
T ss_pred             ceEEEEEEECCeeEEEEcCCCccCCCCcCHHHHHHHHhCCc-------CCCCeEEEEeecCChhHHHHHhhc-cccceee
Confidence            4577788888886655  66766555444444555565543       467899999999999999988765 5899999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCC-cEEEEEccHHHHH
Q 027179          186 MDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFL  219 (227)
Q Consensus       186 is~~Al~~~ar~N~~~ngl~~-~v~~i~gDa~~~L  219 (227)
                      +|+.++ +.+++|++.|++.+ +++++.+|+++.+
T Consensus        82 ~s~~~i-~~a~~n~~~~~l~~~~i~~~~~d~~~~~  115 (194)
T d1dusa_          82 INRRAI-KLAKENIKLNNLDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             SCHHHH-HHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred             eccccc-hhHHHHHHHhCCccceEEEEEcchhhhh
Confidence            999999 99999999999874 6999999987644

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.41  E-value=2.7e-13  Score=120.34  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=64.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHHhh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~~~  224 (227)
                      .++++|||+|||||.+|++++..|+.+|++||+|+.++ +++++|++.|+++ ++++++++|++++|+.+.+
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~-~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~  213 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYARR  213 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHH-HHHHHHHHHhcccCcceEEEEccHHHHHHHHHh
Confidence            46889999999999999999988999999999999999 9999999999996 5799999999999987643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.40  E-value=1.2e-13  Score=119.45  Aligned_cols=65  Identities=20%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||+|.+++.+|++|+.+|++||+|++|+ +.+++|++.|+++++++++++|+.+++
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~n~l~~~v~~~~~D~~~~~  170 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP  170 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHHhCCCceEEEEEcchHHhc
Confidence            46889999999999999999998877999999999999 999999999999999999999998754

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=111.44  Aligned_cols=102  Identities=13%  Similarity=-0.035  Sum_probs=76.8

Q ss_pred             cccCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHH
Q 027179          114 GKARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVV  191 (227)
Q Consensus       114 G~~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al  191 (227)
                      -+|.|+.+.++++. .|||.++......+..+..... ....+..++||+|||||++++.++++ ...+|+++|++++|+
T Consensus        20 ~~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~-~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al   98 (250)
T d2h00a1          20 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQD-SDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF   98 (250)
T ss_dssp             HHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCC-GGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred             HHHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhc-cCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHH
Confidence            36889999998875 8998776544443333321100 00123468999999999999998875 345899999999999


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          192 SNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       192 ~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                       +.|++|++.|++.+++.+++.+..+
T Consensus        99 -~~A~~N~~~n~l~~~~~~~~~~~~~  123 (250)
T d2h00a1          99 -NYAKKNVEQNNLSDLIKVVKVPQKT  123 (250)
T ss_dssp             -HHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred             -HHHHHHHHHhCCCcceeeeeeccHH
Confidence             9999999999999999999876543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.34  E-value=1.1e-12  Score=109.55  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD  206 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~  206 (227)
                      ....+|+..++..++..+...+    +.+|++|||+|||||.++++++..|+.+|++||+|+.++ +.+++|+.      
T Consensus        24 leQy~T~~~~a~~~~~~~~~~~----dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~-~~ar~N~~------   92 (197)
T d1ne2a_          24 LEQYPTDASTAAYFLIEIYNDG----NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCG------   92 (197)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHT----SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCT------
T ss_pred             cccCCCCHHHHHHHHHHHHHcC----CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH-HHHHHccc------
Confidence            3566777777766665555443    378999999999999999999999999999999999999 99999864      


Q ss_pred             cEEEEEccHHH
Q 027179          207 VSSIHTVRVET  217 (227)
Q Consensus       207 ~v~~i~gDa~~  217 (227)
                      +++++++|+.+
T Consensus        93 ~~~~~~~D~~~  103 (197)
T d1ne2a_          93 GVNFMVADVSE  103 (197)
T ss_dssp             TSEEEECCGGG
T ss_pred             cccEEEEehhh
Confidence            35677777653

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=3.3e-12  Score=112.59  Aligned_cols=103  Identities=18%  Similarity=0.190  Sum_probs=80.6

Q ss_pred             eEEEEecc-----cCCeeecCCCCCCCCCCHH---HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCC
Q 027179          108 LLQVLGGK-----ARRKKLLSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS  179 (227)
Q Consensus       108 ~L~ii~G~-----~~Gr~L~v~~g~~~RPtte---~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~  179 (227)
                      .+..+.|+     ..|.+|.++++.+..+.++   .+.+.+.+++..       .++.+|||||||+|.||+.+++. ++
T Consensus       164 ~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~-------~~~~~vlDLycG~G~fsl~La~~-~~  235 (358)
T d1uwva2         164 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV-------QPEDRVLDLFCGMGNFTLPLATQ-AA  235 (358)
T ss_dssp             CCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC-------CTTCEEEEESCTTTTTHHHHHTT-SS
T ss_pred             eEEeecCCceEEecCCEEEEECCchhhccchhhhhHHHHHHHHhhcc-------CCCceEEEecccccccchhcccc-cc
Confidence            34455553     3578889988877666653   444555556543       35779999999999999998765 46


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       180 ~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      +|++||+++.|+ +.|++|++.|++. +++++++|+.+.+.
T Consensus       236 ~V~gvE~~~~ai-~~A~~na~~n~i~-n~~~~~~~~~~~~~  274 (358)
T d1uwva2         236 SVVGVEGVPALV-EKGQQNARLNGLQ-NVTFYHENLEEDVT  274 (358)
T ss_dssp             EEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred             EEEeccCcHHHH-HHHHHhHHhcccc-cceeeecchhhhhh
Confidence            899999999999 9999999999997 69999999887654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=2.2e-12  Score=114.03  Aligned_cols=68  Identities=22%  Similarity=0.238  Sum_probs=61.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHhh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~~  224 (227)
                      .++++|||+|||||.++++++. |+.+|++||+|+.++ +++++|++.||++ +++++++|++++++.+.+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al-~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~  211 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEAL-RRAEENARLNGLG-NVRVLEANAFDLLRRLEK  211 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHH-HHHHHHHHHTTCT-TEEEEESCHHHHHHHHHH
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHH-HHHHHHHHHcCCC-CcceeeccHHHHhhhhHh
Confidence            4688999999999999998775 567999999999999 9999999999996 699999999999887654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.4e-11  Score=102.72  Aligned_cols=82  Identities=16%  Similarity=0.052  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      ..|.++.....+...+..       .++.+|||+|||+|.++..++.....+|++||+|+.++ +.+++|++.+|+.+++
T Consensus        14 ~~p~~~~~~~~l~~~~~l-------~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~-~~ar~~~~~~gl~~~v   85 (245)
T d1nkva_          14 HNPFTEEKYATLGRVLRM-------KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSERV   85 (245)
T ss_dssp             SSSCCHHHHHHHHHHTCC-------CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTTTE
T ss_pred             cCCCCHHHHHHHHHHcCC-------CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchh-hHHHHHHHHhhccccc
Confidence            356666655556555543       47889999999999999998875324899999999999 9999999999999899


Q ss_pred             EEEEccHHHH
Q 027179          209 SIHTVRVETF  218 (227)
Q Consensus       209 ~~i~gDa~~~  218 (227)
                      +++++|+.+.
T Consensus        86 ~~~~~d~~~~   95 (245)
T d1nkva_          86 HFIHNDAAGY   95 (245)
T ss_dssp             EEEESCCTTC
T ss_pred             hhhhhHHhhc
Confidence            9999998764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.7e-11  Score=102.23  Aligned_cols=63  Identities=17%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++++|||+|||+|.+++.+|+.|+.+|+++|.++.+.  .++++++.++..++++++++|+.+.
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~--~a~~~~~~~~~~~~i~~~~~~~~~l   96 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY--QAMDIIRLNKLEDTITLIKGKIEEV   96 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH--HHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH--HHHHHHHHhCCCccceEEEeeHHHh
Confidence            47889999999999999999999999999999999876  5778888888888999999998763

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.13  E-value=1.1e-10  Score=96.45  Aligned_cols=61  Identities=18%  Similarity=0.086  Sum_probs=55.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||||.++..++.++ .+|++||+|+.++ +.|++++..+++. ++.++++|+.+
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l-~~A~~~~~~~~~~-~~~~~~~d~~~   75 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMV-EVASSFAQEKGVE-NVRFQQGTAES   75 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHH-HHHHHHHHHHTCC-SEEEEECBTTB
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhh-hhhhhhhcccccc-ccccccccccc
Confidence            478899999999999999999887 4899999999999 9999999999985 59999999865

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=5.1e-11  Score=104.02  Aligned_cols=62  Identities=23%  Similarity=0.202  Sum_probs=56.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++++|||+|||+|.+++.||+.|+.+|++||.++.+  ..+++|++.|++.++++++++|+.+
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~--~~a~~~~~~n~~~~~v~~~~~~~~~   93 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS--DYAVKIVKANKLDHVVTIIKGKVEE   93 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH--HHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH--hhhhhHHHHhCCccccceEeccHHH
Confidence            3688999999999999999999999999999999864  5889999999999999999999875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.3e-10  Score=101.69  Aligned_cols=63  Identities=24%  Similarity=0.336  Sum_probs=57.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++++|||+|||||.+++.+++.|+.+|+++|.++ .+ +.++++++.+++.++++++++|+.+.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l   99 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDV   99 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhc
Confidence            37889999999999999999999999999999997 44 69999999999999999999998653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.09  E-value=1.5e-10  Score=94.20  Aligned_cols=61  Identities=16%  Similarity=0.055  Sum_probs=54.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++..|+ +|++||+|+.++ +.|+++++.++.. +++++++|+.+
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i-~~A~~~~~~~~~~-~i~~~~~d~~~   74 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDIL-KVARAFIEGNGHQ-QVEYVQGDAEQ   74 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCC-C
T ss_pred             CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHH-hhhhhcccccccc-ccccccccccc
Confidence            3678999999999999999988875 899999999999 9999999999975 69999999865

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.06  E-value=2.7e-10  Score=93.83  Aligned_cols=60  Identities=23%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||||.+++.++..|+ +|++||.|+.++ +.|++|+..+++  +++++++|+.+
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi-~~a~~~~~~~~~--~i~~~~~d~~~   99 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVLE   99 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGGG
T ss_pred             CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccc-cccccccccccc--cchheehhhhh
Confidence            3567899999999999999999886 899999999999 999999998887  58899999865

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.03  E-value=2.7e-10  Score=96.76  Aligned_cols=62  Identities=16%  Similarity=0.164  Sum_probs=56.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.+ |+ +|++||+++.++ +.++++.+..|+.++++++++|+.+
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i-~~a~~~~~~~gl~~~v~~~~~d~~~  128 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGSFLE  128 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhh-hhhhccccccccccccccccccccc
Confidence            46789999999999999998876 54 899999999999 9999999999999899999999865

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.01  E-value=5.4e-10  Score=92.62  Aligned_cols=61  Identities=15%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++++|||+|||||.+++.++..|. +|+|||.|+.++ +.|++++...++  +++++++|+.++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml-~~A~~~~~~~~~--~v~~~~~d~~~~   96 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEML-SEAENKFRSQGL--KPRLACQDISNL   96 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHH-HHHHHHHHHTTC--CCEEECCCGGGC
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhh-hhccccccccCc--cceeeccchhhh
Confidence            4668999999999999999998886 899999999999 999999988886  589999998653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.00  E-value=8.9e-10  Score=90.43  Aligned_cols=81  Identities=10%  Similarity=-0.073  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV  207 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~---Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~  207 (227)
                      |.=+.+.+.+..++....     .++.+|||||||||.+++.++..   ...+|++||+|+.++ +.|++++...+...+
T Consensus        20 P~Y~~~~~~i~~~~~~~~-----~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml-~~A~~~~~~~~~~~~   93 (225)
T d1im8a_          20 PGYSNIITAIGMLAERFV-----TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIP   93 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHC-----CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHH-HHHHHHHHTSCCSSC
T ss_pred             CCHHHHHHHHHHHHHHhc-----CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHH-HHHHHHhHhhcccch
Confidence            444555555555555442     46789999999999999998863   335899999999999 999999998887777


Q ss_pred             EEEEEccHHH
Q 027179          208 SSIHTVRVET  217 (227)
Q Consensus       208 v~~i~gDa~~  217 (227)
                      ++++++|+.+
T Consensus        94 ~~~~~~d~~~  103 (225)
T d1im8a_          94 VEILCNDIRH  103 (225)
T ss_dssp             EEEECSCTTT
T ss_pred             hhhccchhhc
Confidence            8888888754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.98  E-value=2.2e-10  Score=89.67  Aligned_cols=62  Identities=13%  Similarity=-0.080  Sum_probs=50.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC-----------CCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-----------LDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl-----------~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|..++.+|.+|. +|++||+|+.++ +.++++++..+.           ...++++++|+.+
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   91 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHH-HHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence            4788999999999999999999986 799999999999 999988754432           1234677777654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.97  E-value=6.6e-10  Score=93.02  Aligned_cols=62  Identities=16%  Similarity=-0.045  Sum_probs=55.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      .++++|||||||+|.....++..|..+|+|||+|+.++ +.|++.+..++...++.++++|+.
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l-~~A~~r~~~~~~~~~v~f~~~D~~   84 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSY   84 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTT
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHhcCCCcceEEEEcchh
Confidence            36789999999999999998888888999999999999 999998888877667999999975

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=1.1e-09  Score=94.55  Aligned_cols=96  Identities=16%  Similarity=0.110  Sum_probs=74.4

Q ss_pred             cccCCeeecCCCCC---CCCCCHHHHHH---------------HHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179          114 GKARRKKLLSPKGM---DVRPMMEVVKG---------------AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (227)
Q Consensus       114 G~~~Gr~L~v~~g~---~~RPtte~v~e---------------alf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas  175 (227)
                      |+-+|-.+....|.   ..||+.+....               .++.++..       .++.+|||+|||||.+++.+|.
T Consensus        51 g~~~G~~v~~~~g~~~~~~~p~~~d~~~~~~r~~qiiypkd~~~Ii~~l~i-------~pG~~VLDiG~GsG~lt~~lA~  123 (266)
T d1o54a_          51 EKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDV-------KEGDRIIDTGVGSGAMCAVLAR  123 (266)
T ss_dssp             TSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCCeEEEecCCCeEEEECCCHHHHHhhccCCccccchHHHHHHHHhhCC-------CCCCEEEECCCCCCHHHHHHHH
Confidence            55667777666553   47788775332               23333332       5789999999999999999986


Q ss_pred             c-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          176 R-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       176 ~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      . + .++|+++|++++.+ +.|++|++.+++.+++.+..+|+.+
T Consensus       124 ~~~~~G~V~~vD~~~~~~-~~A~~~~~~~g~~~~v~~~~~d~~~  166 (266)
T d1o54a_         124 AVGSSGKVFAYEKREEFA-KLAESNLTKWGLIERVTIKVRDISE  166 (266)
T ss_dssp             HTTTTCEEEEECCCHHHH-HHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             HhCCCcEEEEEeCCHHHH-HHHHHHHHHhccccCcEEEeccccc
Confidence            4 3 36899999999999 9999999999998889999998754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=1.7e-09  Score=93.53  Aligned_cols=96  Identities=15%  Similarity=0.095  Sum_probs=74.5

Q ss_pred             cccCCeeecCCCCC---CCCCCHHHHHHH---------------HHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179          114 GKARRKKLLSPKGM---DVRPMMEVVKGA---------------AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (227)
Q Consensus       114 G~~~Gr~L~v~~g~---~~RPtte~v~ea---------------lf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas  175 (227)
                      |+-+|-++....|.   ..|||.+.....               ++.++..       .++.+|||+|||||++++.+|.
T Consensus        44 Gk~~G~~v~t~~g~~~~v~~pt~~~~~~~~~r~tqiiypkD~s~Ii~~l~i-------~PG~~VLE~G~GsG~lt~~La~  116 (264)
T d1i9ga_          44 GLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDI-------FPGARVLEAGAGSGALTLSLLR  116 (264)
T ss_dssp             TCCTTEEEECSSCCEEEEECCCHHHHHTTSCSCSCCCCHHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCEEEEeCCCHHHHHhhccCCccccchHHHHHHHHHhCC-------CCCCEEEecCcCCcHHHHHHHH
Confidence            67778888887664   368988764322               2333332       5789999999999999999987


Q ss_pred             c-C-CCEEEEEeCCHHHHHHHHHHHHHHh--CCCCcEEEEEccHHH
Q 027179          176 R-G-CSEVHFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVET  217 (227)
Q Consensus       176 ~-G-a~~V~aVEis~~Al~~~ar~N~~~n--gl~~~v~~i~gDa~~  217 (227)
                      . | .++|+++|++++.+ +.|++|++..  +..++++++++|+.+
T Consensus       117 ~vgp~G~V~~~d~~~~~~-~~Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_         117 AVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             hhCCCcEEEEecCCHHHH-HHHHHhhhhhccCCCceEEEEeccccc
Confidence            4 4 46999999999999 9999999876  344679999999865

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.93  E-value=2e-09  Score=86.73  Aligned_cols=61  Identities=25%  Similarity=0.266  Sum_probs=54.4

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..+.+|||+|||+|..++.++.+|. +|++||+|+.++ +.++++++..+++ ++++..+|+.+
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l-~~a~~~~~~~~~~-~~~~~~~d~~~   89 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASM-ANLERIKAAEGLD-NLQTDLVDLNT   89 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCT-TEEEEECCTTT
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHH-HHHHHHhhhcccc-chhhhheeccc
Confidence            3556999999999999999999986 799999999999 9999999999986 58898888754

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.92  E-value=4.2e-09  Score=95.13  Aligned_cols=89  Identities=18%  Similarity=0.157  Sum_probs=72.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      .+++|.+..-+...+..++.       ..+.+|||++||||..||.++. .|+.+|+++|+|+.|+ +++++|++.|++.
T Consensus        24 vFYNp~q~~NRDlsvl~~~~-------~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~-~~i~~N~~lN~~~   95 (375)
T d2dula1          24 VFYNPRMALNRDIVVVLLNI-------LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFDG   95 (375)
T ss_dssp             CCCCGGGHHHHHHHHHHHHH-------HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCCS
T ss_pred             cccCHHHhhhhHHHHHHHHH-------hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHH-HHHHHHHHhcCcc
Confidence            58999988777665444444       3567999999999999997766 5788999999999999 9999999999874


Q ss_pred             C--------------cEEEEEccHHHHHHHHh
Q 027179          206 D--------------VSSIHTVRVETFLERAE  223 (227)
Q Consensus       206 ~--------------~v~~i~gDa~~~L~~~~  223 (227)
                      +              ++.+.+.|+...+....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~  127 (375)
T d2dula1          96 ELRESKGRAILKGEKTIVINHDDANRLMAERH  127 (375)
T ss_dssp             CCEECSSEEEEESSSEEEEEESCHHHHHHHST
T ss_pred             ccccccccccccccceeEeehhhhhhhhHhhc
Confidence            3              47889999988776543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=1.5e-09  Score=87.16  Aligned_cols=59  Identities=17%  Similarity=0.108  Sum_probs=50.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.+++.++..|. +|+|+|+|+.++ +.+++++...+.  ++.++++|+.+
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i-~~ak~~~~~~~~--~~~~~~~d~~~   95 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMI-RKAREYAKSRES--NVEFIVGDARK   95 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECCTTS
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc-ccccccccccch-hhhhhhhccccc--ccccccccccc
Confidence            567999999999999999998875 799999999999 999999887775  35677777654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.4e-10  Score=90.28  Aligned_cols=63  Identities=17%  Similarity=0.110  Sum_probs=55.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ..+.+|||+|||+|.++..++..+..+|++||+|+.++ +.|++++...+.. +++++++|+.++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l-~~ak~~~~~~~~~-~~~f~~~d~~~~  121 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGKR-VRNYFCCGLQDF  121 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGGG-EEEEEECCGGGC
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHh-hcccccccccccc-cccccccccccc
Confidence            35679999999999999988777777999999999999 9999999888764 589999998764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=2e-09  Score=89.38  Aligned_cols=77  Identities=16%  Similarity=-0.002  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH  211 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i  211 (227)
                      +.+...+++.+..       .++++|||+|||||.++..+++. | ..+|+++|++++.+ +.+++|++..++. ++.++
T Consensus        61 P~~~a~~l~~l~l-------~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~-~~a~~~~~~~~~~-n~~~~  131 (213)
T d1dl5a1          61 PSLMALFMEWVGL-------DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIE-NVIFV  131 (213)
T ss_dssp             HHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEE
T ss_pred             chhhHHHHHhhhc-------cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhH-HHhhhhHhhhccc-ccccc
Confidence            4455556666654       47889999999999999988864 3 35899999999999 9999999999986 58899


Q ss_pred             EccHHHHH
Q 027179          212 TVRVETFL  219 (227)
Q Consensus       212 ~gDa~~~L  219 (227)
                      ++|+.+.+
T Consensus       132 ~~d~~~~~  139 (213)
T d1dl5a1         132 CGDGYYGV  139 (213)
T ss_dssp             ESCGGGCC
T ss_pred             cCchHHcc
Confidence            99987643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.9e-09  Score=91.23  Aligned_cols=97  Identities=18%  Similarity=0.089  Sum_probs=73.5

Q ss_pred             cccCCeeecCCCCC---CCCCCHHHHHHH---------------HHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179          114 GKARRKKLLSPKGM---DVRPMMEVVKGA---------------AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS  175 (227)
Q Consensus       114 G~~~Gr~L~v~~g~---~~RPtte~v~ea---------------lf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas  175 (227)
                      |+-+|-.+....|.   ..|||.+.....               ++.++..       .++.+|||+|||+|.+++.+|.
T Consensus        46 Gk~~G~~v~~~~g~~~~v~~Pt~~d~~~~~~r~tqiiypkD~~~Il~~l~i-------~pG~rVLE~GtGsG~lt~~LAr  118 (324)
T d2b25a1          46 GKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDI-------NPGDTVLEAGSGSGGMSLFLSK  118 (324)
T ss_dssp             TCCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCCCCHHHHHHHHHHHTC-------CTTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCCcEEEeCCCCEEEEeCCCHHHHhhccCCCCcccccccHHHHHHHhCC-------CCCCEEEEecccccHHHHHHHH
Confidence            55667777766664   368888764433               3333332       5789999999999999999887


Q ss_pred             c-C-CCEEEEEeCCHHHHHHHHHHHHHHhC----------CCCcEEEEEccHHHH
Q 027179          176 R-G-CSEVHFVEMDPWVVSNVLIPNLEWTG----------FLDVSSIHTVRVETF  218 (227)
Q Consensus       176 ~-G-a~~V~aVEis~~Al~~~ar~N~~~ng----------l~~~v~~i~gDa~~~  218 (227)
                      . | .++|+++|++++.+ +.|++|++..+          ..++++++++|+.++
T Consensus       119 ~vg~~G~V~t~E~~~~~~-~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1         119 AVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             HHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             HhCCCcEEEEecCCHHHH-HHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence            4 4 46899999999999 99999998753          346799999998654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.4e-09  Score=87.57  Aligned_cols=63  Identities=13%  Similarity=-0.054  Sum_probs=51.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC----------------CCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG----------------FLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng----------------l~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|..++.+|..|. +|++||+|+.|+ +.++++.....                ...+++++++|+++
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGI-QEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHH-HHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            4678999999999999999999997 799999999999 88887654321                12468899999875


Q ss_pred             H
Q 027179          218 F  218 (227)
Q Consensus       218 ~  218 (227)
                      .
T Consensus       122 l  122 (229)
T d2bzga1         122 L  122 (229)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.79  E-value=4.8e-09  Score=89.88  Aligned_cols=65  Identities=15%  Similarity=0.096  Sum_probs=57.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .++.+|||+|||||.+++.+|..  ..++|+++|++++.+ +.|++|++.++..++++++++|+.+.+
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~-~~A~~n~~~~~~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDIGNVRTSRSDIADFI  150 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhcCCCceEEEEeeeeccc
Confidence            57899999999999999998864  346899999999999 999999999877678999999987643

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.4e-09  Score=90.32  Aligned_cols=78  Identities=14%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHh-------C
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT-------G  203 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~n-------g  203 (227)
                      +.......+++.+..       .++++|||+|||+|.+.+.+|. .++.+|+|||+++.++ +.|+++++..       |
T Consensus       135 ~~~~~~~~~~~~~~l-------~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~-~~a~~~~~~~~~~~~~~g  206 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKM-------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKWYG  206 (328)
T ss_dssp             CCHHHHHHHHHHSCC-------CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHcCC-------CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHhhhcc
Confidence            344455556565543       4678999999999999999876 4788999999999999 9999887654       3


Q ss_pred             CC-CcEEEEEccHHH
Q 027179          204 FL-DVSSIHTVRVET  217 (227)
Q Consensus       204 l~-~~v~~i~gDa~~  217 (227)
                      +. .+++++++|+.+
T Consensus       207 ~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         207 KKHAEYTLERGDFLS  221 (328)
T ss_dssp             CCCCCEEEEECCTTS
T ss_pred             ccCCceEEEECcccc
Confidence            32 469999999865

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=1.8e-08  Score=85.73  Aligned_cols=61  Identities=20%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      +...+.+.+.+..       ..+.+|||+|||||.+++.++.+|. +|++||+|+.++ +.|++|....+
T Consensus        42 ~~~~~~l~~~l~~-------~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml-~~A~~~~~~~~  102 (292)
T d1xvaa_          42 AEYKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKML-KYALKERWNRR  102 (292)
T ss_dssp             HHHHHHHHHHHHH-------TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhh-------cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHH-HHHHHHHHhcc
Confidence            4445566666665       3467999999999999999999986 799999999999 99999987654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.6e-08  Score=83.80  Aligned_cols=64  Identities=14%  Similarity=-0.024  Sum_probs=54.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .++.+|||+|||+|.++..++..+..+|++||+|+.++ +.++++++..+.  ++.++.+|+.+...
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~  115 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAP  115 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGG
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHH-HHHHHHhhhccc--cccccccccccccc
Confidence            36789999999999999998887667899999999999 999999877653  57888888876544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.71  E-value=1.4e-08  Score=84.21  Aligned_cols=60  Identities=12%  Similarity=-0.074  Sum_probs=51.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||||.....++.. +.++|+|||++++++ +.++++++..+   ++.++.+|+.+
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i-~~a~~~a~~~~---ni~~i~~d~~~  115 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRERN---NIIPLLFDASK  115 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHCS---SEEEECSCTTC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHH-HHHHHHhhccC---CceEEEeeccC
Confidence            46889999999999999988864 556899999999999 99999988764   57888888754

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.4e-08  Score=84.95  Aligned_cols=79  Identities=14%  Similarity=0.016  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCC----CcE
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFL----DVS  208 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~----~~v  208 (227)
                      .+...+++.|....     .++++|||+|||||..+..++.. | ..+|++||++++++ +.+++|+++.++.    +++
T Consensus        61 ~~~a~~le~L~~~l-----~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~-~~a~~~l~~~~~~~~~~~~~  134 (224)
T d1i1na_          61 HMHAYALELLFDQL-----HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRV  134 (224)
T ss_dssp             HHHHHHHHHTTTTS-----CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSE
T ss_pred             HHHHHHHHHHhhcc-----CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHH-HHHHHhccccCcccccccce
Confidence            34455666664321     47889999999999999877763 3 46899999999999 9999999987753    468


Q ss_pred             EEEEccHHHHH
Q 027179          209 SIHTVRVETFL  219 (227)
Q Consensus       209 ~~i~gDa~~~L  219 (227)
                      +++++|+.+..
T Consensus       135 ~~~~gD~~~~~  145 (224)
T d1i1na_         135 QLVVGDGRMGY  145 (224)
T ss_dssp             EEEESCGGGCC
T ss_pred             EEEEeeccccc
Confidence            99999987543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.69  E-value=1.2e-08  Score=85.45  Aligned_cols=77  Identities=16%  Similarity=0.044  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179          134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT  212 (227)
Q Consensus       134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~  212 (227)
                      +.+...+++.|..       .++++|||+|||||..+..++.. | .+|++||.++..+ +.+++|++.+++. ++++++
T Consensus        64 P~~~a~ml~~L~l-------~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~-~~a~~~l~~~g~~-nv~~~~  133 (215)
T d1jg1a_          64 PHMVAIMLEIANL-------KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELV-EFAKRNLERAGVK-NVHVIL  133 (215)
T ss_dssp             HHHHHHHHHHHTC-------CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEE
T ss_pred             hhhHHHHHHhhcc-------CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHH-HHHHHHHHHcCCc-eeEEEE
Confidence            4455556677764       47889999999999999887764 5 4699999999999 9999999999986 699999


Q ss_pred             ccHHHHHH
Q 027179          213 VRVETFLE  220 (227)
Q Consensus       213 gDa~~~L~  220 (227)
                      +|..+-+.
T Consensus       134 gd~~~g~~  141 (215)
T d1jg1a_         134 GDGSKGFP  141 (215)
T ss_dssp             SCGGGCCG
T ss_pred             CccccCCc
Confidence            99876443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=1.6e-08  Score=87.35  Aligned_cols=62  Identities=15%  Similarity=-0.039  Sum_probs=55.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||.|.+++.++.. |+ +|++||+|+..+ +.+++.++..++.+++.+...|..+
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~-~~a~~~~~~~~l~~~~~~~~~d~~~  113 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGWED  113 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             CCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHH-HHHHHHHHhhccccchhhhhhhhhh
Confidence            46889999999999999998875 75 899999999999 9999999999998888888888643

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.65  E-value=4.1e-08  Score=80.48  Aligned_cols=57  Identities=23%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..|. +|++||+|++++ +.++++.     .++++++++|+.+
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i-~~a~~~~-----~~~~~~~~~~~~~   75 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAI-SHAQGRL-----KDGITYIHSRFED   75 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHH-HHHHHHS-----CSCEEEEESCGGG
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHh-hhhhccc-----ccccccccccccc
Confidence            4677999999999999999888775 699999999999 8998663     2358888888754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.65  E-value=3.4e-08  Score=81.76  Aligned_cols=64  Identities=8%  Similarity=0.021  Sum_probs=56.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE  220 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~  220 (227)
                      .+..|||+|||+|.+.+.+|.. ....++|||+++.++ ..+.++++.+++. |+.++++|+.+.++
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i-~~a~~~~~~~~l~-Nv~~~~~Da~~l~~   93 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQ-NVKLLNIDADTLTD   93 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCS-SEEEECCCGGGHHH
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHH-HHHHHHHHHHhcc-Cchhcccchhhhhc
Confidence            3568999999999999998875 446899999999999 9999999999996 69999999987664

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=6.6e-08  Score=80.33  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=60.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~  223 (227)
                      +.++|||+|||+|.-++.++..  ...+|++||++++.+ +.+++|++..|+.++++++.||+.+.+..+.
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~-~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~  125 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA-AITQQMLNFAGLQDKVTILNGASQDLIPQLK  125 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGHH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH-HHHHHHHHHcCCCccceeeeccccccccchh
Confidence            5679999999999999998863  236899999999999 9999999999999999999999999876653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.63  E-value=2e-08  Score=84.60  Aligned_cols=69  Identities=14%  Similarity=0.012  Sum_probs=56.1

Q ss_pred             HHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       139 alf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+++.|..       .++++|||+|||||.++..++..+ .+|++||++++.+ +.+++|...+   ++++++++|..+.
T Consensus        61 ~ml~~L~l-------~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~-~~A~~~~~~~---~nv~~~~~d~~~g  128 (224)
T d1vbfa_          61 FMLDELDL-------HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMY-NYASKLLSYY---NNIKLILGDGTLG  128 (224)
T ss_dssp             HHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHTTC---SSEEEEESCGGGC
T ss_pred             HHHHHhhh-------cccceEEEecCCCCHHHHHHHHHh-cccccccccHHHH-HHHHHHHhcc---cccccccCchhhc
Confidence            45566654       478899999999999998877765 5899999999999 9999987643   4799999998764


Q ss_pred             H
Q 027179          219 L  219 (227)
Q Consensus       219 L  219 (227)
                      .
T Consensus       129 ~  129 (224)
T d1vbfa_         129 Y  129 (224)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.60  E-value=4.9e-08  Score=84.66  Aligned_cols=62  Identities=15%  Similarity=0.033  Sum_probs=56.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||.|.+++.++. .|+ +|++|.+|++-+ +.+++.++..|+.+++++..+|..+
T Consensus        61 ~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~-~~a~~~~~~~g~~~~v~~~~~d~~~  123 (285)
T d1kpga_          61 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGWEQ  123 (285)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             CCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHH-HHHHHHHHhhhhhhhhHHHHhhhhc
Confidence            5789999999999999999776 476 899999999998 9999999999999999999999754

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.58  E-value=3.5e-08  Score=83.02  Aligned_cols=80  Identities=14%  Similarity=0.013  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS  209 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~  209 (227)
                      |....+..++..-+....    ..++.+|||||||||..+..++.. +.+.|+|||+|++++ +.++++++..+   ++.
T Consensus        54 p~rsklaA~i~~gl~~l~----ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i-~~a~~~a~~~~---ni~  125 (230)
T d1g8sa_          54 PNKSKLAAAIIKGLKVMP----IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAERE---NII  125 (230)
T ss_dssp             TTTCHHHHHHHTTCCCCC----CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTCT---TEE
T ss_pred             CCccHHHHHHHhhHHhCC----CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHhhhc---ccc
Confidence            666677766655443211    246889999999999999999875 346899999999999 89888776543   567


Q ss_pred             EEEccHHHH
Q 027179          210 IHTVRVETF  218 (227)
Q Consensus       210 ~i~gDa~~~  218 (227)
                      ++.+|+...
T Consensus       126 ~i~~d~~~~  134 (230)
T d1g8sa_         126 PILGDANKP  134 (230)
T ss_dssp             EEECCTTCG
T ss_pred             eEEEeeccC
Confidence            787777543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=8.9e-08  Score=83.20  Aligned_cols=61  Identities=13%  Similarity=-0.045  Sum_probs=55.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      .++.+|||+|||.|.+++.+|.. |+ +|++|++|++-+ +.+++.++..++.+++++...|..
T Consensus        60 ~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~-~~a~~~~~~~~l~~~v~~~~~d~~  121 (291)
T d1kpia_          60 EPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQY-AHDKAMFDEVDSPRRKEVRIQGWE  121 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHSCCSSCEEEEECCGG
T ss_pred             CCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHH-HHHHHHHHhhccchhhhhhhhccc
Confidence            57899999999999999998864 76 899999999999 999999999999989999998864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.54  E-value=3.2e-08  Score=83.64  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ..+.+|||+|||+|.++..++..+..+|++||.++.++ +.|+++....   .+++++++|+.++
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l-~~a~~~~~~~---~~~~~~~~d~~~~  152 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGM---PVGKFILASMETA  152 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTS---SEEEEEESCGGGC
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHH-Hhhhcccccc---ccceeEEcccccc
Confidence            35679999999999999998877667899999999999 9999876432   3578888887653

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.54  E-value=8.8e-08  Score=81.61  Aligned_cols=61  Identities=11%  Similarity=0.068  Sum_probs=52.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.+++.++.. + ..+|++||+|+.++ +.+++|....+.  +++++++|+.+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l-~~a~~~~~~~~~--~~~f~~~d~~~   88 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDATE   88 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHH-HHHHHHHHSSSS--EEEEEESCTTT
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHh-hhhhcccccccc--ccccccccccc
Confidence            35679999999999999998864 2 25899999999999 999999988876  58899999764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=1.6e-07  Score=75.77  Aligned_cols=44  Identities=32%  Similarity=0.315  Sum_probs=39.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      ..+.+|||+|||+|.++..++..|+ +|+|||+|+.++ +.|++|.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l-~~a~~~~   84 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEML-EVAREKG   84 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHT
T ss_pred             CCCCEEEEECCCCchhcccccccce-EEEEeecccccc-ccccccc
Confidence            3567999999999999999988886 799999999999 9999875

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.50  E-value=9.9e-08  Score=79.86  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=53.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..++|||+|||+|.+++.++.+. ..+++++|+ +.++ +.+++++...++.++++++.+|+++
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~rv~~~~~D~~~  141 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFE  141 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHH-HHHHHHHHHhhcccchhhccccchh
Confidence            45799999999999999998763 468999998 6677 9999999999998899999999865

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.47  E-value=9.9e-08  Score=80.25  Aligned_cols=78  Identities=17%  Similarity=0.096  Sum_probs=57.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS  208 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v  208 (227)
                      |....+..+++.-+...    ...++.+|||||||+|.++..++.. | .++|++||++++++ +.++++++..+   ++
T Consensus        53 p~rSKlaa~i~~~l~~l----~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l-~~a~~~a~~~~---~~  124 (227)
T d1g8aa_          53 PNRSKLGAAIMNGLKNF----PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEERR---NI  124 (227)
T ss_dssp             TTTCHHHHHHHTTCCCC----CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSCT---TE
T ss_pred             CCccHHHHHHHcccccc----ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHHhcC---Cc
Confidence            44556666665444321    1257899999999999999999874 4 46899999999999 99999887554   35


Q ss_pred             EEEEccHH
Q 027179          209 SIHTVRVE  216 (227)
Q Consensus       209 ~~i~gDa~  216 (227)
                      ..+..|+.
T Consensus       125 ~~i~~d~~  132 (227)
T d1g8aa_         125 VPILGDAT  132 (227)
T ss_dssp             EEEECCTT
T ss_pred             eEEEEECC
Confidence            66666653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.2e-08  Score=81.28  Aligned_cols=50  Identities=14%  Similarity=0.069  Sum_probs=44.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF  204 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl  204 (227)
                      .++.+|||+|||+|.+++.++..++.+|+++|+|+.++ +.++++++....
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i-~~a~~~~~~~~~   99 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKEPG   99 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTCTT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHH-HHHHHHHhhccc
Confidence            46789999999999999888777777899999999999 999999987664

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.6e-07  Score=74.67  Aligned_cols=68  Identities=15%  Similarity=0.020  Sum_probs=61.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ...++||++|||+|.-++.+|..  ..++|+++|++++.. +.+++|++..|+.++++++.||+.+.++.+
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~-~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~  127 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDEL  127 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHH-HHHHHHHHhcCccceEEEEEeehhhcchhh
Confidence            45689999999999999998753  236899999999999 999999999999999999999999998765

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.3e-07  Score=86.05  Aligned_cols=60  Identities=20%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      .....+++.+..       .++++|||||||+|.+.+.+|.. |+++|+|||+++.++ +.|++|++.+
T Consensus       203 ~~i~~Il~~l~L-------kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i-~~Ak~~~~e~  263 (406)
T d1u2za_         203 NFLSDVYQQCQL-------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEEL  263 (406)
T ss_dssp             HHHHHHHHHTTC-------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-------CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHH
Confidence            344455565543       47889999999999999998865 788999999999999 9999998865

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.45  E-value=8.9e-08  Score=80.92  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++++||++|||+|+++..++..+ .+|++||+|+..+ +.++++...+   ++++++++|+.++
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~-~~l~~~~~~~---~n~~i~~~D~l~~   79 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLC-KTTENKLVDH---DNFQVLNKDILQF   79 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHH-HHHHHHTTTC---CSEEEECCCGGGC
T ss_pred             CCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchH-HHHHHHhhcc---cchhhhhhhhhhc
Confidence            478899999999999999999876 5899999999998 8888765322   4799999999864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=3.3e-07  Score=75.20  Aligned_cols=74  Identities=16%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      .+.+.+++++..       .++..+||++||+|..+..++.. +..+|+++|.|++++ +.++++++.++  +++.++++
T Consensus        10 Vll~evi~~l~~-------~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l-~~a~~~l~~~~--~r~~~~~~   79 (192)
T d1m6ya2          10 VMVREVIEFLKP-------EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFS--DRVSLFKV   79 (192)
T ss_dssp             TTHHHHHHHHCC-------CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGT--TTEEEEEC
T ss_pred             hHHHHHHHhhCC-------CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHH-HHHHHhhcccc--ccccchhH
Confidence            345566788865       47789999999999999998874 446899999999999 99999988775  47999999


Q ss_pred             cHHHH
Q 027179          214 RVETF  218 (227)
Q Consensus       214 Da~~~  218 (227)
                      +..+.
T Consensus        80 ~f~~~   84 (192)
T d1m6ya2          80 SYREA   84 (192)
T ss_dssp             CGGGH
T ss_pred             HHhhH
Confidence            86554

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.44  E-value=1.9e-07  Score=77.12  Aligned_cols=63  Identities=10%  Similarity=-0.006  Sum_probs=55.5

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL  219 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L  219 (227)
                      .+..|||+|||+|.+.+++|+. ....+++||+++..+ ..+.++++.+++. |+.++++|+.+.+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v-~~a~~~~~~~~l~-Ni~~~~~da~~l~   94 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGVP-NIKLLWVDGSDLT   94 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCCS-SEEEEECCSSCGG
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHH-HHHHHhhhhhccc-cceeeecCHHHHh
Confidence            4568999999999999999886 456899999999999 9999999999996 5999999987654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=7.2e-07  Score=75.39  Aligned_cols=57  Identities=7%  Similarity=-0.035  Sum_probs=46.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||+|.++..++..+ ..+|++||+|+.++ +.++++.      .+++++++|+.+
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~-~~a~~~~------~~~~~~~~d~~~  140 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRY------PQVTFCVASSHR  140 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHC------TTSEEEECCTTS
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh-hhhhccc------ccccceeeehhh
Confidence            466799999999999999988764 35899999999999 8887642      257888888754

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.30  E-value=1.2e-06  Score=73.60  Aligned_cols=67  Identities=7%  Similarity=0.020  Sum_probs=60.7

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~  222 (227)
                      ..++||++|+++|.-++.+|..  ..++|+.+|.+++.+ +.|++|+++.|+.++++++.+|+.+.|+.+
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~-~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l  127 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEM  127 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhH-HHHHHHHHHhccccceeeeehHHHHHHHHH
Confidence            5679999999999999998852  236899999999999 999999999999999999999999999876

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.27  E-value=1.9e-07  Score=78.20  Aligned_cols=79  Identities=18%  Similarity=0.046  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc----CC---CEEEEEeCCHHHHHHHHHHHHHHhCCC---
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GC---SEVHFVEMDPWVVSNVLIPNLEWTGFL---  205 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~----Ga---~~V~aVEis~~Al~~~ar~N~~~ngl~---  205 (227)
                      +...+++.|....     .++++|||+|||||.++..++..    |+   .+|++||++++.+ +.+++|+..+++.   
T Consensus        66 ~~a~~l~~L~~~l-----~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~-~~a~~~l~~~~~~~~~  139 (223)
T d1r18a_          66 MHAFALEYLRDHL-----KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLD  139 (223)
T ss_dssp             HHHHHHHHTTTTC-----CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhcc-----CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHH-HHHHHhhhhcchhhcC
Confidence            3344556553221     46789999999999998776642    32   4799999999999 9999998655321   


Q ss_pred             -CcEEEEEccHHHHHH
Q 027179          206 -DVSSIHTVRVETFLE  220 (227)
Q Consensus       206 -~~v~~i~gDa~~~L~  220 (227)
                       +++.++++|..+...
T Consensus       140 ~~nv~~~~~d~~~~~~  155 (223)
T d1r18a_         140 SGQLLIVEGDGRKGYP  155 (223)
T ss_dssp             HTSEEEEESCGGGCCG
T ss_pred             ccEEEEEecccccccc
Confidence             369999999876433

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.24  E-value=1.3e-06  Score=73.43  Aligned_cols=62  Identities=15%  Similarity=0.041  Sum_probs=54.0

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ...+|||+|||+|.++++++.+. ..+++++|+ ++.+ +.++++++..++.++++++.+|.++.
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-~~a~~~~~~~~~~~ri~~~~~d~~~~  143 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFKP  143 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-HHHHHHHhhcCCcceeeeeeeecccc
Confidence            34689999999999999998763 458999998 7888 99999999999989999999998653

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=8.7e-07  Score=76.72  Aligned_cols=63  Identities=19%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .+++.||++|+|+|+++.+++..++ +|++||+|+..+ +.+++....+...++++++++|+.++
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~-~~L~~~~~~~~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLV-AELHKRVQGTPVASKLQVLVGDVLKT   82 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchh-HHHHHHHhhhccccchhhhHHHHhhh
Confidence            4678999999999999999998874 899999999998 89998887766656899999998753

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=1.3e-06  Score=69.71  Aligned_cols=49  Identities=16%  Similarity=0.081  Sum_probs=38.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|||+|||+|.++..+.     ++++||.|+.++ +.++++        +++++++|+.+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~-~~a~~~--------~~~~~~~d~~~   84 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMA-EIARKR--------GVFVLKGTAEN   84 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHH-HHHHHT--------TCEEEECBTTB
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhc-cccccc--------ccccccccccc
Confidence            45689999999999987752     479999999999 888864        35677777643

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.2e-06  Score=74.58  Aligned_cols=70  Identities=11%  Similarity=0.039  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      +.+.+.+.+..       .+++.||++|||+|+++-.++.++ .+|++||+|+..+ +.+++....   .++++++++|+
T Consensus         9 ~~~~Iv~~~~~-------~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~-~~L~~~~~~---~~~~~ii~~D~   76 (252)
T d1qyra_           9 VIDSIVSAINP-------QKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA-ARLQTHPFL---GPKLTIYQQDA   76 (252)
T ss_dssp             HHHHHHHHHCC-------CTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHH-HHHHTCTTT---GGGEEEECSCG
T ss_pred             HHHHHHHhcCC-------CCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchh-HHHHHHhhh---ccchhHHhhhh
Confidence            44555555543       467899999999999999988775 5899999999998 787763322   24799999999


Q ss_pred             HH
Q 027179          216 ET  217 (227)
Q Consensus       216 ~~  217 (227)
                      .+
T Consensus        77 l~   78 (252)
T d1qyra_          77 MT   78 (252)
T ss_dssp             GG
T ss_pred             hh
Confidence            86

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.07  E-value=3.3e-06  Score=72.65  Aligned_cols=60  Identities=12%  Similarity=0.040  Sum_probs=48.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR------GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~------Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      .++.+|||.|||||.+.+++..+      ...+++++|+++.++ +.|+.|+..++..  ..+.++|..
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~-~~a~~~~~~~~~~--~~~~~~d~~  181 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQK--MTLLHQDGL  181 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTCC--CEEEESCTT
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHH-HHHHHHHHHhhhh--hhhhccccc
Confidence            35678999999999999988642      123799999999999 9999999998864  467777654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.9e-06  Score=72.49  Aligned_cols=48  Identities=10%  Similarity=0.020  Sum_probs=41.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      .++.++||+|||+|.+++..+..+..+|+++|.++.++ +.++++++..
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i-~~~~~~~~~~  100 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQEE  100 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHTTC
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHH-HHHHHHHhcC
Confidence            57889999999999998766666567999999999999 9999887543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.99  E-value=7.5e-06  Score=66.50  Aligned_cols=59  Identities=19%  Similarity=0.072  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE  200 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~  200 (227)
                      .+..+.+.++....        .+++.|||.|||||+.+++|...| .+.+++|++++.+ +.|++.++
T Consensus       197 kP~~L~~~lI~~~s--------~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~-~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASS--------NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYV-NQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHC--------CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHH
T ss_pred             cchhHHHHHHHHhC--------CCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHH-HHHHHHHc
Confidence            34566666666554        378899999999999999888777 5899999999999 99998875

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.98  E-value=2.5e-06  Score=72.93  Aligned_cols=65  Identities=22%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--------CCcEEEEEccHHHHHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------LDVSSIHTVRVETFLERA  222 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl--------~~~v~~i~gDa~~~L~~~  222 (227)
                      ..+|||+.||.|.-++.+|+.|+ +|+++|.++... .+++.|++....        .++++++++|+.++|...
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~-~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~  161 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI  161 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred             CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHH-HHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc
Confidence            35899999999999999999986 699999999988 888888766532        237999999999998754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.93  E-value=2.2e-05  Score=67.11  Aligned_cols=70  Identities=21%  Similarity=0.226  Sum_probs=57.9

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh---------CCCCcEEEEEccHHHHHHHHhh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT---------GFLDVSSIHTVRVETFLERAEQ  224 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n---------gl~~~v~~i~gDa~~~L~~~~~  224 (227)
                      .+.++||-+|.|.|...-++++.+..+|++||+|+..+ +++++-...+         .-+.|++++.+|+.++++..++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVI-MVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHH-HHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHH-HHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            35689999999999999998877778999999999999 9999754322         2346899999999999976444

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.93  E-value=1e-07  Score=81.19  Aligned_cols=59  Identities=12%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++.|||+|||+|+++..++..+ .+|++||+|+..+ +.++++..   -..+++++++|+.+
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~-~~l~~~~~---~~~n~~ii~~D~l~   86 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLF-NLSSEKLK---LNTRVTLIHQDILQ   86 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSS-SSSSCTTT---TCSEEEECCSCCTT
T ss_pred             CCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccch-hhhhhhhh---hccchhhhhhhhhc
Confidence            367899999999999999998876 5899999999987 77665432   23479999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.87  E-value=8.6e-06  Score=67.83  Aligned_cols=65  Identities=14%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179          129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG  203 (227)
Q Consensus       129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng  203 (227)
                      +-+.+..+.+.++....        .+++.|||.|||||+.+++|...| .+.+++|++++++ +.+++.+..+.
T Consensus       232 pt~kP~~L~~rlI~~~s--------~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~-~~a~~Rl~~~~  296 (320)
T d1booa_         232 PARFPAKLPEFFIRMLT--------EPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYV-AASAFRFLDNN  296 (320)
T ss_dssp             SSCCCTHHHHHHHHHHC--------CTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHH-HHHHGGGSCSC
T ss_pred             CCcCchHHHHHhhhhcc--------cCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHH-HHHHHHHHhcc
Confidence            34455667777766554        378899999999999999988877 4799999999999 99987765443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.87  E-value=1.6e-06  Score=69.31  Aligned_cols=58  Identities=17%  Similarity=0.090  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHH
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar  196 (227)
                      +|++.+++.+.+++..       .++.+|||.|||||.|.+++..+  ....++++|+++.++ +.++
T Consensus         2 ~TP~~i~~~m~~l~~~-------~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-~~~~   61 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEA-------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLPP   61 (223)
T ss_dssp             CCCHHHHHHHHHHCCC-------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCCT
T ss_pred             CCCHHHHHHHHHhcCC-------CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-hhcc
Confidence            4777888888877654       46789999999999998887653  446799999999887 5544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.83  E-value=5.9e-05  Score=65.62  Aligned_cols=69  Identities=22%  Similarity=0.211  Sum_probs=57.3

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh--C--CCCcEEEEEccHHHHHHHHh
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--G--FLDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~n--g--l~~~v~~i~gDa~~~L~~~~  223 (227)
                      ...++||.+|.|.|.+.-++++. +..+|++||+|++.+ +++++++...  +  -+.+++++.+|+.+++++..
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~  149 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE  149 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHH-HHHHhcCcccccCccCCCceEEEEchHHHHhhhcC
Confidence            35679999999999999998875 467999999999999 9999987432  1  13589999999999998643

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.82  E-value=2e-05  Score=64.63  Aligned_cols=61  Identities=18%  Similarity=0.208  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179          132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT  202 (227)
Q Consensus       132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n  202 (227)
                      .+..+.+.++....        .+++.|||.|||||+.+++|...| .+.+++|+++..+ +.+++.++..
T Consensus       192 kP~~L~~~~I~~~s--------~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~-~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALS--------HPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFK-EYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHS--------CTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHH-HHHHHHHHHC
T ss_pred             cchhHHHHHHHhhc--------CCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHH-HHHHHHHHHh
Confidence            44556666665543        478899999999999999988777 5899999999999 9999888754

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.8e-05  Score=64.68  Aligned_cols=62  Identities=16%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             CeEEEeccCCCHHHHHHHHc------C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc--EEEEEccHHHHH
Q 027179          157 GRWLDLYSGTGSVGIEAISR------G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV--SSIHTVRVETFL  219 (227)
Q Consensus       157 ~~VLDLgsGTG~isI~aas~------G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~--v~~i~gDa~~~L  219 (227)
                      .+|||+|||+|.++..++..      + ..++++||.|+.++ +.++++++......+  +.+.+.++.++.
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKISNLENVKFAWHKETSSEYQ  112 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHH-HHHHHHHTTCCSCTTEEEEEECSCHHHHH
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHH-HHHHHHHhhccccccccccchhhhhhhhc
Confidence            47999999999998877542      2 23689999999999 999998765432222  345566655443

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=8.6e-05  Score=63.70  Aligned_cols=62  Identities=8%  Similarity=0.092  Sum_probs=53.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++.+|||+|||.|.=++.++.  .+..+|+++|+++.-+ +.+++|+++.|+. ++++...|...
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~-~~l~~~l~r~g~~-~~~~~~~d~~~  156 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVS-CCELAEEDFLA  156 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCGGG
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH-HHHHHHHHhcCcc-ceeeeehhhhh
Confidence            4688999999999998887765  3557899999999999 9999999999996 58999988765

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=0.00021  Score=61.81  Aligned_cols=115  Identities=11%  Similarity=0.084  Sum_probs=75.4

Q ss_pred             ccccccceEEEEecccCCeeecCCCCCCCCCCHHHH-HHHHHHH-HHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C
Q 027179          101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVV-KGAAFDI-LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G  177 (227)
Q Consensus       101 ~~~~~~~~L~ii~G~~~Gr~L~v~~g~~~RPtte~v-~ealf~~-L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G  177 (227)
                      ..++....+.|......|+-|.+....+.--.-+.+ -|.+... +...      ...++||=+|.|.|.+.-++++. +
T Consensus        39 ~~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~------~~pk~VLiiGgG~G~~~r~~l~~~~  112 (295)
T d1inla_          39 SGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLH------PNPKKVLIIGGGDGGTLREVLKHDS  112 (295)
T ss_dssp             EEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTSTT
T ss_pred             ecCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhhC------CCCceEEEecCCchHHHHHHHhcCC
Confidence            333444456666555557665554433321111222 2222221 1111      35689999999999999998875 5


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHH
Q 027179          178 CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERA  222 (227)
Q Consensus       178 a~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~  222 (227)
                      ..+|++||+|+..+ +++++....+.  + +.+++++.+|+.+++++.
T Consensus       113 ~~~i~~VEIDp~Vi-~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~  159 (295)
T d1inla_         113 VEKAILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF  159 (295)
T ss_dssp             CSEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC
T ss_pred             CceEEEecCCHHHH-HHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC
Confidence            67999999999999 99999775542  2 358999999999998753

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.40  E-value=0.00046  Score=55.50  Aligned_cols=71  Identities=18%  Similarity=0.159  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      +.++++++|..       .++..++|..+|.|.-+.+++..+ .+|+|+|.+++|+ +.+++.     ...++.+++++.
T Consensus         6 ll~Evl~~l~~-------~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai-~~a~~~-----~~~~~~~~~~~f   71 (182)
T d1wg8a2           6 LYQEALDLLAV-------RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAV-ARAKGL-----HLPGLTVVQGNF   71 (182)
T ss_dssp             THHHHHHHHTC-------CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHH-HHHHHT-----CCTTEEEEESCG
T ss_pred             HHHHHHHhcCC-------CCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHH-HHHhhc-----cccceeEeehHH
Confidence            34556677764       478899999999999999988875 4899999999998 777642     235788998876


Q ss_pred             HHHHH
Q 027179          216 ETFLE  220 (227)
Q Consensus       216 ~~~L~  220 (227)
                      .++-+
T Consensus        72 ~~~~~   76 (182)
T d1wg8a2          72 RHLKR   76 (182)
T ss_dssp             GGHHH
T ss_pred             HHHHH
Confidence            55433

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.39  E-value=0.00011  Score=65.60  Aligned_cols=81  Identities=22%  Similarity=0.117  Sum_probs=63.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc----CC----------CEEEEEeCCHHHHHH
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GC----------SEVHFVEMDPWVVSN  193 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~----Ga----------~~V~aVEis~~Al~~  193 (227)
                      +...|+..|++.+.+.+..       ..+.+|+|.+||||.|-+++..+    +.          ..++++|+++.+. .
T Consensus       142 G~f~TP~~Iv~~mv~ll~~-------~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~-~  213 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINP-------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-T  213 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-H
T ss_pred             hhhccchhhhHhhheeccC-------cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHH-H
Confidence            5677888888888887754       35679999999999999988652    10          2489999999999 9


Q ss_pred             HHHHHHHHhCCC-CcEEEEEccHH
Q 027179          194 VLIPNLEWTGFL-DVSSIHTVRVE  216 (227)
Q Consensus       194 ~ar~N~~~ngl~-~~v~~i~gDa~  216 (227)
                      +++.|...++.. +...+.++|..
T Consensus       214 la~~n~~l~g~~~~~~~i~~~d~l  237 (425)
T d2okca1         214 LASMNLYLHGIGTDRSPIVCEDSL  237 (425)
T ss_dssp             HHHHHHHHTTCCSSCCSEEECCTT
T ss_pred             HHHhhhhhcCCccccceeecCchh
Confidence            999999999875 34567777754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.38  E-value=4.1e-05  Score=65.14  Aligned_cols=83  Identities=14%  Similarity=-0.112  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC--------------------------------
Q 027179          131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--------------------------------  178 (227)
Q Consensus       131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga--------------------------------  178 (227)
                      +.+..++.+++..+-...+   -..+..++|.|||||+|.||++....                                
T Consensus        29 ~~~~~Laa~il~~al~l~~---w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~  105 (249)
T d1o9ga_          29 AFPVRLATEIFQRALARLP---GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT  105 (249)
T ss_dssp             CCCHHHHHHHHHHHHHTSS---CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH
T ss_pred             CcchHHHHHHHHHHhhhhc---CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHH
Confidence            3344566666654322111   12345799999999999999985210                                


Q ss_pred             ---------CEEEEEeCCHHHHHHHH---HHHHHHhCCCCcEEEEEccHHH
Q 027179          179 ---------SEVHFVEMDPWVVSNVL---IPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       179 ---------~~V~aVEis~~Al~~~a---r~N~~~ngl~~~v~~i~gDa~~  217 (227)
                               ..+++.|+++.++ +.+   ++|++..|+.+.+++.+.|+++
T Consensus       106 ~~~~~~~~~~~i~G~D~d~~ai-~~A~~~r~n~~~Agl~~~i~i~~~d~f~  155 (249)
T d1o9ga_         106 ARELERREQSERFGKPSYLEAA-QAARRLRERLTAEGGALPCAIRTADVFD  155 (249)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHTTSSCCEEEEECCTTC
T ss_pred             HHhccccccCCccccccCHHHH-HHHHHHHHHHHHcCCCceeeeeecchhc
Confidence                     1346788888888 887   5799999999889999999875

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00087  Score=57.40  Aligned_cols=67  Identities=21%  Similarity=0.202  Sum_probs=56.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLER  221 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~  221 (227)
                      ...++||-+|.|.|.+.-++++. +..+|+.||+|+..+ +++++-...+.  . +.|++++.+|+.++|+.
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv-~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~  147 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ  147 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHH-HHHHhhchhhccccCCCCceEEEccHHHHHhc
Confidence            35689999999999999998875 678999999999999 99998765431  2 35899999999999975

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.34  E-value=0.00017  Score=60.72  Aligned_cols=45  Identities=29%  Similarity=0.364  Sum_probs=40.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL  199 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~  199 (227)
                      ..+.+|+|||||.|.+++.+-..|..-|.++|+++.|+ +..+.|.
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~-~~~~~N~   53 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNF   53 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHH
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHC
Confidence            45679999999999999988777887889999999999 9999886

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.31  E-value=0.00046  Score=58.78  Aligned_cols=68  Identities=16%  Similarity=0.146  Sum_probs=57.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh-C-C-CCcEEEEEccHHHHHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT-G-F-LDVSSIHTVRVETFLERA  222 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~n-g-l-~~~v~~i~gDa~~~L~~~  222 (227)
                      ...++||-+|-|.|.+.-++++. +..+|+.||+|+..+ +.+++....+ + . +.|++++.+|+.+++++.
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi-~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~  145 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVI-EYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS  145 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHH-HHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHH-HHHHHhChhhcccccCCCeEEEechHHHHHhhc
Confidence            35679999999999999999875 678999999999999 9999976543 2 2 348999999999999763

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00018  Score=62.56  Aligned_cols=78  Identities=18%  Similarity=0.122  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179          135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV  213 (227)
Q Consensus       135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g  213 (227)
                      .+.+.+.+.+..... ....++..|||+|.|.|.++.+++.. ++.+|++||+|+..+ +.+++...    .++++++++
T Consensus        24 ~i~~~Iv~~~~l~~~-~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~-~~L~~~~~----~~~~~ii~~   97 (322)
T d1i4wa_          24 TVYNKIFDKLDLTKT-YKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKFE----GSPLQILKR   97 (322)
T ss_dssp             HHHHHHHHHHCGGGT-CCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHTT----TSSCEEECS
T ss_pred             HHHHHHHHHhcCCcc-ccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHhcc----CCCcEEEeC
Confidence            355556665532200 01135678999999999999998876 567999999999998 77765432    347899999


Q ss_pred             cHHHH
Q 027179          214 RVETF  218 (227)
Q Consensus       214 Da~~~  218 (227)
                      |+..+
T Consensus        98 D~l~~  102 (322)
T d1i4wa_          98 DPYDW  102 (322)
T ss_dssp             CTTCH
T ss_pred             chhhc
Confidence            98765

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.26  E-value=0.0011  Score=56.81  Aligned_cols=67  Identities=21%  Similarity=0.216  Sum_probs=56.4

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERA  222 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~  222 (227)
                      ..++||=+|-|.|.+.-++++. +..+|++||+|++.+ +++++....+.  . +.+++++.+|+.+++.+.
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi-~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~  150 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA  150 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHH-HHHHHhchhhhccccCCCcEEEEccHHHHHhhc
Confidence            5679999999999999998875 557999999999999 99998664332  1 368999999999999764

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.25  E-value=0.00019  Score=59.58  Aligned_cols=53  Identities=15%  Similarity=0.213  Sum_probs=43.5

Q ss_pred             eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      +|+|||||.|.+++.+-..|..-|.++|+++.|+ +..+.|.     .  -+++.+|+.+.
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~-~~~~~N~-----~--~~~~~~Di~~~   54 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-KTYESNH-----S--AKLIKGDISKI   54 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHH-HHHHHHC-----C--SEEEESCTTTS
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHHC-----C--CCCccCChhhC
Confidence            6999999999999987667887888999999998 8888874     2  25677887653

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00072  Score=55.47  Aligned_cols=63  Identities=22%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      .++.+++|+|||.|.=|+.+|- ....+|+.||.+..-+ ..+++=++..++. +++++++++++.
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L~-nv~v~~~R~E~~  127 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLE-NIEPVQSRVEEF  127 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCS-SEEEEECCTTTS
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCCc-ceeeeccchhhh
Confidence            4567999999999999999875 4457999999999998 8988888889986 599999888764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.09  E-value=0.00061  Score=59.39  Aligned_cols=68  Identities=22%  Similarity=0.248  Sum_probs=56.8

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHHh
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAE  223 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~~  223 (227)
                      ..++||-+|.|.|.+.-++++. +..+|++||+|+..+ +.+++....+.  + +.+++++.+|+.++++...
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv-~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~  177 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHK  177 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCT
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHH-HHHHhhchhhccccCCCCeEEEEchHHHHHHhCC
Confidence            5679999999999999999875 557999999999999 99998764432  1 2589999999999997643

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00045  Score=57.83  Aligned_cols=55  Identities=22%  Similarity=0.267  Sum_probs=41.7

Q ss_pred             CCeEEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..+|+|||||.|.+++.+-..|.  .-|.++|+++.|+ +..+.|.-      ...++++|+.+
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~-~~~~~n~~------~~~~~~~di~~   58 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYNFP------HTQLLAKTIEG   58 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCT------TSCEECSCGGG
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHH-HHHHHHCC------CCCcccCchhh
Confidence            45899999999999887655565  3488999999998 88887731      23566777654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.81  E-value=0.0019  Score=55.68  Aligned_cols=62  Identities=13%  Similarity=-0.011  Sum_probs=52.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .++++|||+|||-|.=++.++.  .+...++++|+++.-+ +.+++|+++.|+. ++.++..|...
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~-~~l~~~~~r~~~~-~i~~~~~d~~~  178 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVL-NVILFHSSSLH  178 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCC-SEEEESSCGGG
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHH-HHHHHHHHHHHhh-ccccccccccc
Confidence            4788999999999997777664  3446899999999999 9999999999996 57888888654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.003  Score=52.89  Aligned_cols=62  Identities=18%  Similarity=0.053  Sum_probs=53.6

Q ss_pred             CCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ...+|+|+|||.|.=||.++- ....+|+.||.+..-+ ...+.=++..++. +++++++++.++
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~-~FL~~v~~~L~L~-n~~i~~~R~E~~  132 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLE-NTTFCHDRAETF  132 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCS-SEEEEESCHHHH
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH-HHHHHHHHHhCCC-CcEEEeehhhhc
Confidence            356899999999999998874 5667999999999998 8988888999996 589999998765

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0018  Score=54.94  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=50.0

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV  215 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa  215 (227)
                      .++.+|||+|||-|.=++.++..+ ..+|+++|+++.-+ +.+++|+++.|+.+ +.+...|.
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~-~~l~~~~~r~g~~~-~~~~~~~~  161 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMKA-TVKQGDGR  161 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCCC-EEEECCTT
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh-hhHhhhhhcccccc-eeeecccc
Confidence            478899999999999999887643 36899999999998 99999999999964 55555443

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0023  Score=58.35  Aligned_cols=70  Identities=14%  Similarity=-0.033  Sum_probs=55.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc----CC---------------CEEEEEeCCH
Q 027179          128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GC---------------SEVHFVEMDP  188 (227)
Q Consensus       128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~----Ga---------------~~V~aVEis~  188 (227)
                      +..+|+..|++.+..++..       ..+.+|+|.+||||.|-+++...    ..               ..++++|+++
T Consensus       144 GqfyTP~~Iv~~mv~ll~~-------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~  216 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKP-------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP  216 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred             chhccccchhHhhhhcccC-------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH
Confidence            5677888888888887764       35679999999999999887642    10               1489999999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 027179          189 WVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       189 ~Al~~~ar~N~~~ngl~  205 (227)
                      .+. .+++-|+-.++..
T Consensus       217 ~~~-~la~~nl~l~~~~  232 (524)
T d2ar0a1         217 GTR-RLALMNCLLHDIE  232 (524)
T ss_dssp             HHH-HHHHHHHHTTTCC
T ss_pred             HHH-HHHHHHHHhhccc
Confidence            999 9999999888764

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.36  E-value=0.0046  Score=51.25  Aligned_cols=55  Identities=15%  Similarity=-0.031  Sum_probs=42.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ...+|||+|||+|.++++++++ ...+++.+|. |..+ +       ..+..++++++.+|.++.
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-~-------~~~~~~ri~~~~gd~~~~  136 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-E-------NAPPLSGIEHVGGDMFAS  136 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-T-------TCCCCTTEEEEECCTTTC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhh-h-------ccCCCCCeEEecCCcccc
Confidence            3478999999999999999875 4468999997 4444 3       234457899999998753

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.12  E-value=0.0035  Score=51.90  Aligned_cols=53  Identities=15%  Similarity=-0.006  Sum_probs=41.9

Q ss_pred             CCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..+|||+|+|+|.++++++.+ ...+++..|. |..+ +.       .+..++++++.+|.++
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-~~-------~~~~~rv~~~~gD~f~  134 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-EN-------LSGSNNLTYVGGDMFT  134 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TT-------CCCBTTEEEEECCTTT
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHH-Hh-------CcccCceEEEecCccc
Confidence            468999999999999999875 3468999998 5554 32       3445789999999875

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.85  E-value=0.049  Score=48.12  Aligned_cols=51  Identities=18%  Similarity=0.111  Sum_probs=42.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH--cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS--RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFL  205 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas--~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~  205 (227)
                      .++..++|+||-.|..++.++.  .+ ..+|+++|.++... +.+++|++.|...
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~-~~LkkNi~~n~~~  264 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRRYTDT  264 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHHTTTS
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHH-HHHHHHHHhcccc
Confidence            4667999999999999887664  22 35899999999999 9999999988754

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=94.82  E-value=0.013  Score=47.94  Aligned_cols=54  Identities=13%  Similarity=-0.029  Sum_probs=41.1

Q ss_pred             CCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      ..+|||+|||+|.++++++.+ ...+++.+|.-+ .+ +.       ....++++++.+|.++.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-~~-------~~~~~r~~~~~~d~~~~  136 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VI-ED-------APSYPGVEHVGGDMFVS  136 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TT-TT-------CCCCTTEEEEECCTTTC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hh-hh-------cccCCceEEeccccccc
Confidence            468999999999999999875 346899999854 33 22       23346899999998653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.19  E-value=0.088  Score=41.43  Aligned_cols=43  Identities=12%  Similarity=0.027  Sum_probs=33.7

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++++||.+|||. |.+++.+++ .|+.+|+++|.++..+ +.+++
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~   68 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKA   68 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-Hhhhh
Confidence            5788999998876 445555554 5888999999999988 88775

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.94  E-value=0.091  Score=41.22  Aligned_cols=42  Identities=17%  Similarity=0.083  Sum_probs=30.6

Q ss_pred             CCCeEEEeccCCCH----HHHHHHHc----C-CCEEEEEeCCHHHHHHHHHH
Q 027179          155 RPGRWLDLYSGTGS----VGIEAISR----G-CSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       155 ~~~~VLDLgsGTG~----isI~aas~----G-a~~V~aVEis~~Al~~~ar~  197 (227)
                      ..-+||+.|||||-    +++.+...    + .-+++|.|+|+.++ +.|++
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l-~~A~~   74 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARS   74 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHH
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHh-hHhhc
Confidence            45699999999997    33333221    1 13799999999999 88874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.21  E-value=0.099  Score=39.95  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=31.4

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++++||-+|||. |.+.+.+++ .|+.+|+++|.+++.+ +.+++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~   71 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEE   71 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHH
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccc-ccccc
Confidence            4678999987652 333344444 5888999999999998 88764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.76  E-value=0.49  Score=38.32  Aligned_cols=62  Identities=11%  Similarity=0.032  Sum_probs=45.7

Q ss_pred             CCCCeEEEeccCCCH---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~---isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++++++|=-|+++|.   ++..++..|+ +|+.+|.+++.+ +.+.+.+...+-..++..+++|+.+
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l-~~~~~~~~~~~~~~~~~~~~~Dvt~   66 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGL-EASKAAVLETAPDAEVLTTVADVSD   66 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHCTTCCEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhhCCCCeEEEEeccCCC
Confidence            467888888876652   3444556786 799999999988 7777776666555578899999754

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=90.70  E-value=0.12  Score=40.43  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=29.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDP  188 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~  188 (227)
                      .++.+||||||+-|.++..++..  ....|+++|+.+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            46789999999999999988763  346899999876

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.37  Score=38.96  Aligned_cols=61  Identities=11%  Similarity=0.014  Sum_probs=47.7

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++.+|=.|+++ .||.+++    ..|+ +|+.++.+++.+ +.+.+-++..+...++.++++|+.+
T Consensus         8 lk~Kv~lITGas~-GIG~aiA~~la~~G~-~Vv~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~Dls~   72 (257)
T d1xg5a_           8 WRDRLALVTGASG-GIGAAVARALVQQGL-KVVGCARTVGNI-EELAAECKSAGYPGTLIPYRCDLSN   72 (257)
T ss_dssp             GTTCEEEEESTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCceEEEEEccCCC
Confidence            5688899999665 5566655    4686 799999999998 7777777777766678899999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.30  E-value=0.41  Score=39.00  Aligned_cols=61  Identities=13%  Similarity=0.078  Sum_probs=47.1

Q ss_pred             CCCCeEEEeccCCCHHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~a----as~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++| ||.+.    +..|+ +|+.+|.+++.+ +.+.+.++..+.. .++..+.+|+.+
T Consensus         2 L~gK~alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~i~~~~~~~~~~~~~~~Dv~~   67 (274)
T d1xhla_           2 FSGKSVIITGSSNG-IGRSAAVIFAKEGA-QVTITGRNEDRL-EETKQQILKAGVPAEKINAVVADVTE   67 (274)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEECCTTS
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEEeeCCC
Confidence            46788888887665 55544    45686 799999999998 8888888887754 468999999754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.00  E-value=0.53  Score=38.02  Aligned_cols=59  Identities=12%  Similarity=0.178  Sum_probs=44.9

Q ss_pred             CCCCeEEEeccCCCHHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~a----as~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++++++|=-|+++| ||.++    +..|+ +|+.+|.+++.+ +.+.+.++..+.  ++..+.+|+.+
T Consensus         3 L~gK~alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~~   65 (260)
T d1zema1           3 FNGKVCLVTGAGGN-IGLATALRLAEEGT-AIALLDMNREAL-EKAEASVREKGV--EARSYVCDVTS   65 (260)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTTS--CEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCC
Confidence            57888998886654 45544    45686 799999999998 888877776664  58899999853

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.56  E-value=0.45  Score=38.62  Aligned_cols=61  Identities=11%  Similarity=0.021  Sum_probs=46.3

Q ss_pred             CCCCeEEEeccCCCHHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~a----as~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~  217 (227)
                      ++++++|=-|+++ .||.+.    +..|+ +|+.++.+++.+ +.+.+.++..+.. .++..+.+|+.+
T Consensus         3 L~gK~alVTGas~-GIG~aia~~la~~Ga-~V~l~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvs~   68 (272)
T d1xkqa_           3 FSNKTVIITGSSN-GIGRTTAILFAQEGA-NVTITGRSSERL-EETRQIILKSGVSEKQVNSVVADVTT   68 (272)
T ss_dssp             TTTCEEEETTCSS-HHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTTCCGGGEEEEECCTTS
T ss_pred             CCCCEEEEeCcCc-HHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCCceEEEEccCCC
Confidence            4678888888665 455544    45686 799999999998 8888888777654 468899999754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.38  E-value=0.48  Score=36.11  Aligned_cols=42  Identities=21%  Similarity=0.218  Sum_probs=30.7

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLI  196 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar  196 (227)
                      .++++|+=+|||. |.+++.+++ .|+.+|+++|.+++-. +.++
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~-~~a~   69 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICV-EAAK   69 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHH-HHHH
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhH-HHHH
Confidence            4677888777754 455555555 4888899999999887 7765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.32  E-value=0.82  Score=36.89  Aligned_cols=59  Identities=10%  Similarity=0.001  Sum_probs=44.9

Q ss_pred             CCCCeEEEeccCCCHHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~a----as~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=.|+. +.+|.++    +..|+ +|+.++.+++.+ +.+.+.++..+.  ++.++.+|+.+
T Consensus         4 L~gK~alITGas-~GIG~aia~~la~~G~-~V~i~~r~~~~l-~~~~~~~~~~~~--~~~~~~~D~s~   66 (258)
T d1ae1a_           4 LKGTTALVTGGS-KGIGYAIVEELAGLGA-RVYTCSRNEKEL-DECLEIWREKGL--NVEGSVCDLLS   66 (258)
T ss_dssp             CTTCEEEEESCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTC
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--CceEEEeecCC
Confidence            578889988875 5555544    45686 799999999988 777777877774  57888899853

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.03  E-value=0.55  Score=37.78  Aligned_cols=59  Identities=15%  Similarity=0.052  Sum_probs=45.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++.+|=-|+++ .||.+++.    .|+ +|+.++.+++.+ +.+.+.++..+.  ++..+++|+.+
T Consensus         8 lenKvalITGas~-GIG~a~a~~la~~Ga-~V~~~~r~~~~l-~~~~~~l~~~g~--~~~~~~~Dvt~   70 (251)
T d2c07a1           8 GENKVALVTGAGR-GIGREIAKMLAKSVS-HVICISRTQKSC-DSVVDEIKSFGY--ESSGYAGDVSK   70 (251)
T ss_dssp             CSSCEEEEESTTS-HHHHHHHHHHTTTSS-EEEEEESSHHHH-HHHHHHHHTTTC--CEEEEECCTTC
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCC
Confidence            5788888888655 47776654    565 799999999998 788877776664  58899999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.99  E-value=0.73  Score=37.15  Aligned_cols=59  Identities=15%  Similarity=0.117  Sum_probs=44.6

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++ .||.+++    ..|+ +|+.+|.+++.+ +.+.+.++..+.  ++.++.+|+.+
T Consensus         6 L~GK~alITGas~-GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~~   68 (259)
T d2ae2a_           6 LEGCTALVTGGSR-GIGYGIVEELASLGA-SVYTCSRNQKEL-NDCLTQWRSKGF--KVEASVCDLSS   68 (259)
T ss_dssp             CTTCEEEEESCSS-HHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--EEEEEECCTTC
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--CceEEEeeCCC
Confidence            5788999888665 4555544    5687 799999999998 777777776663  68889999853

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.88  Score=36.54  Aligned_cols=62  Identities=11%  Similarity=-0.001  Sum_probs=47.4

Q ss_pred             CCCCCeEEEeccCCCH---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179          153 SLRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF  218 (227)
Q Consensus       153 ~~~~~~VLDLgsGTG~---isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~  218 (227)
                      +..|+.+|=-|+++|.   ++..++..|+ +|+.+|.+++.+ +.+.++++..+-  ++..+.+|+.+.
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l-~~~~~~~~~~~~--~~~~~~~Dvs~~   68 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGL-EETAAKCKGLGA--KVHTFVVDCSNR   68 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCH
Confidence            4678888888877763   3444456786 799999999998 888888877663  688999998653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.77  E-value=0.23  Score=38.14  Aligned_cols=43  Identities=12%  Similarity=0.027  Sum_probs=32.4

Q ss_pred             CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .+++.|+=+|||. |.+++.+++ .|+..|+++|.+++.. +.+++
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~   71 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKA   71 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHH
Confidence            4678888887765 555555555 5888999999999887 66664

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.33  E-value=0.47  Score=35.27  Aligned_cols=42  Identities=21%  Similarity=0.119  Sum_probs=29.7

Q ss_pred             CCCCeEEEeccC-CCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsG-TG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++++|+-+||| .|.+.+.+++ .|+ +|+++|.+++-+ +.+++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~-~~a~~   68 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRL-EVAKN   68 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHH-HHHHH
Confidence            467889888765 3333343344 476 899999999998 88775

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.54  E-value=0.91  Score=36.62  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=44.6

Q ss_pred             CCCCeEEEeccCCCHHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~----aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++| ||.+    ++..|+ +|+.++.+++.+ +.+.+.++..+.  ++..+.+|+.+
T Consensus         6 LkgK~alVTGas~G-IG~aiA~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~~~~~--~~~~~~~Dv~~   68 (259)
T d1xq1a_           6 LKAKTVLVTGGTKG-IGHAIVEEFAGFGA-VIHTCARNEYEL-NECLSKWQKKGF--QVTGSVCDASL   68 (259)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--ceEEEeccCCC
Confidence            57888998887655 4554    445787 799999999988 777777776654  58899998853

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.35  E-value=0.75  Score=37.19  Aligned_cols=60  Identities=18%  Similarity=0.132  Sum_probs=42.6

Q ss_pred             CCCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHH-HhCCCCcEEEEEccHHH
Q 027179          153 SLRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVET  217 (227)
Q Consensus       153 ~~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~-~ngl~~~v~~i~gDa~~  217 (227)
                      ..+++++|=-|+.+| ||.+++    ..|+ +|+.+|.+++.+ +.+.+.+. ..+  .++.++.+|+.+
T Consensus        22 ~l~gK~alITGas~G-IG~aiA~~la~~Ga-~Vii~~r~~~~l-~~~~~~l~~~~g--~~~~~~~~D~~~   86 (294)
T d1w6ua_          22 SFQGKVAFITGGGTG-LGKGMTTLLSSLGA-QCVIASRKMDVL-KATAEQISSQTG--NKVHAIQCDVRD   86 (294)
T ss_dssp             TTTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHHS--SCEEEEECCTTC
T ss_pred             CCCCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHhcC--CceEEEEecccC
Confidence            467888998887655 555544    5686 799999999887 55555543 344  357889998854

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.67  E-value=1.4  Score=35.26  Aligned_cols=59  Identities=20%  Similarity=0.168  Sum_probs=42.3

Q ss_pred             CCCCeEEEeccCCCHHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHH-HHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNL-EWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~----aas~Ga~~V~aVEis~~Al~~~ar~N~-~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++| ||.+    ++..|+ +|+.+|.+++.+ +.+.+.+ +..+.  ++..+.+|+.+
T Consensus         3 l~gK~~lITGas~G-IG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l~~~~g~--~~~~~~~Dv~~   66 (251)
T d1vl8a_           3 LRGRVALVTGGSRG-LGFGIAQGLAEAGC-SVVVASRNLEEA-SEAAQKLTEKYGV--ETMAFRCDVSN   66 (251)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHHCC--CEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHHhCC--cEEEEEccCCC
Confidence            57889998897665 4554    445787 799999999887 5555544 44453  58889999854

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.12  E-value=1.1  Score=35.92  Aligned_cols=61  Identities=11%  Similarity=0.016  Sum_probs=46.2

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~  217 (227)
                      ++++.+|=-|++ +.||.+.+    ..|+ +|+.++.+++.+ +.+.+.++..+.. .++.++.+|+.+
T Consensus         3 l~gKvalVTGas-~GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvt~   68 (264)
T d1spxa_           3 FAEKVAIITGSS-NGIGRATAVLFAREGA-KVTITGRHAERL-EETRQQILAAGVSEQNVNSVVADVTT   68 (264)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEECCTTS
T ss_pred             CCCCEEEEeCcC-CHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCcCceEEEEccCCC
Confidence            467777877755 55666554    4686 799999999998 8888888877654 468999999853

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.73  E-value=0.29  Score=36.77  Aligned_cols=42  Identities=14%  Similarity=-0.001  Sum_probs=31.1

Q ss_pred             CCCCeEEEeccC-CCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179          154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP  197 (227)
Q Consensus       154 ~~~~~VLDLgsG-TG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~  197 (227)
                      .++++|+-+|+| .|.+++.+++ .|+ +|+++|.+++.+ +.+++
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~-~~a~~   69 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKR-EDAMK   69 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTH-HHHHH
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHH-HHhhc
Confidence            478899999876 4555555554 487 799999999887 77664

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.68  E-value=1.5  Score=35.01  Aligned_cols=57  Identities=18%  Similarity=0.137  Sum_probs=41.9

Q ss_pred             CCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          156 PGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       156 ~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ++.+|=-|+ ++.||.+.+    ..|+ +|+.++.+++.+ +.+.+.++..+.  ++.++++|+.+
T Consensus         2 gKValITGa-s~GIG~aia~~la~~Ga-~V~i~~r~~~~l-~~~~~~l~~~g~--~~~~~~~Dvs~   62 (257)
T d2rhca1           2 SEVALVTGA-TSGIGLEIARRLGKEGL-RVFVCARGEEGL-RTTLKELREAGV--EADGRTCDVRS   62 (257)
T ss_dssp             CCEEEEESC-SSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTC
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeecCC
Confidence            455566665 455566554    4686 799999999998 888888877764  58899999854

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=85.28  E-value=0.26  Score=40.18  Aligned_cols=55  Identities=13%  Similarity=0.014  Sum_probs=38.3

Q ss_pred             CCCeEEEeccCCCHHHHHHHH----c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAIS----R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE  216 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aas----~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~  216 (227)
                      ++++||++|++.|.-++.++.    . ...+|+++|+++... ....     .. ..+++++++|..
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~-~~~~-----~~-~~~I~~i~gDs~  139 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPA-----SD-MENITLHQGDCS  139 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCG-----GG-CTTEEEEECCSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh-hhhh-----cc-ccceeeeecccc
Confidence            567999999999976665442    2 246899999987554 2211     11 257999999864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.97  E-value=1.3  Score=35.24  Aligned_cols=59  Identities=14%  Similarity=0.076  Sum_probs=42.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEE-EeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHF-VEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~a-VEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ..|+++|=-| |++.||.+.+    ..|+ +|+. ...+.+.. +.+.+.++.+|.  ++..+.+|+.+
T Consensus         4 L~GK~alITG-as~GIG~aia~~la~~G~-~Vvi~~~~~~~~~-~~~~~~~~~~g~--~~~~~~~D~~~   67 (259)
T d1ja9a_           4 LAGKVALTTG-AGRGIGRGIAIELGRRGA-SVVVNYGSSSKAA-EEVVAELKKLGA--QGVAIQADISK   67 (259)
T ss_dssp             TTTCEEEETT-TTSHHHHHHHHHHHHTTC-EEEEEESSCHHHH-HHHHHHHHHTTC--CEEEEECCTTS
T ss_pred             CCCCEEEEeC-CCCHHHHHHHHHHHHcCC-EEEEEcCCChHHH-HHHHHHHHHcCC--CceEecCCCCC
Confidence            5788899666 5565555544    5687 4654 56788877 888888888875  58899999854

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.80  E-value=0.59  Score=33.62  Aligned_cols=45  Identities=13%  Similarity=0.295  Sum_probs=32.5

Q ss_pred             cCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          164 SGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       164 sGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      ||.|.+|..++.    .| ..|+.||.|++.+ +.+++.   .+    +.++.||+.+
T Consensus         6 ~G~G~~G~~la~~L~~~g-~~v~vid~d~~~~-~~~~~~---~~----~~vi~Gd~~~   54 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKG-HDIVLIDIDKDIC-KKASAE---ID----ALVINGDCTK   54 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHH---CS----SEEEESCTTS
T ss_pred             ECCCHHHHHHHHHHHHCC-CCcceecCChhhh-hhhhhh---hh----hhhccCcccc
Confidence            566899988774    35 4799999999988 655432   22    4688898753

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=83.79  E-value=1.6  Score=34.83  Aligned_cols=58  Identities=10%  Similarity=-0.015  Sum_probs=42.1

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++ .||.+.+    ..|+ +|+.++.+++.+ +.+.+.+.   ..+++.++++|+.+
T Consensus         4 L~gK~alVTGas~-GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~~~---~~~~~~~~~~Dv~~   65 (251)
T d1zk4a1           4 LDGKVAIITGGTL-GIGLAIATKFVEEGA-KVMITGRHSDVG-EKAAKSVG---TPDQIQFFQHDSSD   65 (251)
T ss_dssp             TTTCEEEETTTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHC---CTTTEEEEECCTTC
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHhC---CCCcEEEEEccCCC
Confidence            5778888888554 5665554    4687 799999999888 77666553   23478999999864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=83.26  E-value=1.3  Score=35.79  Aligned_cols=58  Identities=12%  Similarity=0.074  Sum_probs=41.0

Q ss_pred             CCCCCeEEEeccCCC---HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       153 ~~~~~~VLDLgsGTG---~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      +.+++++|=-|+++|   .++..++..|+ +|+.+|.+++.+ +.+.+.     +.+++.++++|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~-----~~~~~~~~~~Dv~~   62 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEG-AATARE-----LGDAARYQHLDVTI   62 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHT-----TGGGEEEEECCTTC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHH-----hCCceEEEEcccCC
Confidence            367889999998776   33444455787 699999999887 544332     23468899999854

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.26  E-value=1.5  Score=35.23  Aligned_cols=58  Identities=17%  Similarity=0.098  Sum_probs=42.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++| ||.+.+    ..|+ +|+.+|.+++.+ +.+.+.+..   .+++.++.+|+.+
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l~~---~~~~~~~~~Dv~~   65 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGA-KVVIADIADDHG-QKVCNNIGS---PDVISFVHCDVTK   65 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHCC---TTTEEEEECCTTC
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHhcC---CCceEEEEccCCC
Confidence            57889999996655 666655    4676 799999999887 666655533   3457889999854

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.04  E-value=2.1  Score=34.24  Aligned_cols=59  Identities=12%  Similarity=0.106  Sum_probs=44.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+ ++.||.+.+    ..|+ +|+.++.+++.+ +.+.+.++..+.  ++..+++|+.+
T Consensus         9 L~gK~alITGa-s~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~l~~~g~--~~~~~~~Dvs~   71 (255)
T d1fmca_           9 LDGKCAIITGA-GAGIGKEIAITFATAGA-SVVVSDINADAA-NHVVDEIQQLGG--QAFACRCDITS   71 (255)
T ss_dssp             CTTCEEEETTT-TSHHHHHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTC
T ss_pred             CCCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEccCCC
Confidence            57888887774 456676665    3576 799999999998 777777777663  58899999864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=81.55  E-value=0.5  Score=39.48  Aligned_cols=33  Identities=21%  Similarity=0.143  Sum_probs=25.8

Q ss_pred             CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeC
Q 027179          154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEM  186 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEi  186 (227)
                      .+..+|+|||||-|.++-.++.+. ...|.++++
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            356689999999999999988763 245777766

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.95  E-value=1.9  Score=34.24  Aligned_cols=60  Identities=12%  Similarity=-0.075  Sum_probs=41.9

Q ss_pred             CCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       155 ~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .|+.+|=-|++ +.||.+++    ..|+ +|+.+|.+++.+ +.+.+.+....-..++.++++|+.+
T Consensus         2 ~GKvalITGas-~GIG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dv~~   65 (254)
T d2gdza1           2 NGKVALVTGAA-QGIGRAFAEALLLKGA-KVALVDWNLEAG-VQCKAALHEQFEPQKTLFIQCDVAD   65 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHTTTSCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHhcCCCcEEEEEeecCC
Confidence            46778888865 45676665    4676 799999999887 6665555433223468899999864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.61  E-value=2  Score=34.23  Aligned_cols=56  Identities=18%  Similarity=0.169  Sum_probs=40.7

Q ss_pred             CCCCeEEEeccCCCHHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~----aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++| ||.+    ++..|+ +|+.+|.+++.+ +.+.+.+     .+++.++++|+.+
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~G~-~V~~~~r~~~~~-~~~~~~~-----~~~~~~~~~Dv~~   63 (244)
T d1nffa_           4 LTGKVALVSGGARG-MGASHVRAMVAEGA-KVVFGDILDEEG-KAMAAEL-----ADAARYVHLDVTQ   63 (244)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHT-----GGGEEEEECCTTC
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHh-----hCcceEEEeecCC
Confidence            67889998897766 4544    445787 799999999887 6555443     2467889999854

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=80.61  E-value=2  Score=34.52  Aligned_cols=59  Identities=15%  Similarity=0.008  Sum_probs=42.5

Q ss_pred             CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCH-HHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDP-WVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~-~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+++| ||.+++    ..|+ +|+.++.+. ..+ +.+.+.++..+.  ++..+++|+.+
T Consensus         5 L~gK~alITGas~G-IG~aia~~la~~G~-~Vv~~~r~~~~~~-~~~~~~~~~~g~--~~~~~~~Dvt~   68 (261)
T d1geea_           5 LEGKVVVITGSSTG-LGKSMAIRFATEKA-KVVVNYRSKEDEA-NSVLEEIKKVGG--EAIAVKGDVTV   68 (261)
T ss_dssp             GTTCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHH-HHHHHHHHHTTC--EEEEEECCTTS
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCcHHHH-HHHHHHHHhcCC--cEEEEEccCCC
Confidence            57888888887665 565544    5686 799999874 455 677777777664  68899999854

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.15  E-value=2.8  Score=33.39  Aligned_cols=60  Identities=18%  Similarity=0.176  Sum_probs=42.7

Q ss_pred             CCCCeEEEeccCCCH---HHHHHHHcCCCEEEEEeCC-HHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179          154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVET  217 (227)
Q Consensus       154 ~~~~~VLDLgsGTG~---isI~aas~Ga~~V~aVEis-~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~  217 (227)
                      .+++++|=-|+.+|.   ++..++..|+ +|+..+.+ .+.+ +.+.+.++.++.  ++.++++|+.+
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~-~~~~~~~~~~g~--~~~~~~~D~~~   79 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESA-EEVVAAIKKNGS--DAACVKANVGV   79 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHH-HHHHHHHHHTTC--CEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHH-HHHHHHHHhhCC--ceeeEeCCCCC
Confidence            578888888876653   4444556786 69999887 4555 666666777765  58899999854