Citrus Sinensis ID: 027181

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRVRT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEccccEEEEEEEcc
Coil and Loop (DISEMBL)
MWELICLTLAATAgnnigkvlqkkgtvilpplsfKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALsqapvsviqpvsgcgLAILSIFSHFYLKEVMNAVDWMGITLAGigtigvgaggeeqepssisifqlpWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVfleqgfptmlvpVCISIsiccsgtgfyyQVRVRT
Flexible Loop (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRVRT
Low Complexity Region (SEG)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMgitlagigtigvgaggEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRReqemiefevveeiiYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRVRT
Disordered region (IsUnstruct)
*WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG*****SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR***
Disordered Region (DISOPRED)
MWELICLTLAATAGNNIGKVLQK******************YAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQE**SISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRVR*
Disordered Region (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRVRT
Disordered Region (DISPRO)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRVRT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRVRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
P55580	117	Uncharacterized protein y	yes	no	0.488	0.948	0.318	0.0004

>sp|P55580|Y4NH_RHISN Uncharacterized protein y4nH OS=Rhizobium sp. (strain NGR234) GN=NGR_a02340 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 5   ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLR 64
           I L  AA   + IG +L K G   LPP +          +   +V G +      LL  +
Sbjct: 6   IILVFAAGLNSCIGNILLKWGRASLPPSAGLADTF----LTPGFVGGVVFYGINVLLFAK 61

Query: 65  ALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119
           AL    VSV  P+ +G G A+L I SH++  E  +   W+G+ L  +G I +  GG
Sbjct: 62  ALDSLEVSVAYPILAGSGFAMLIIASHYFFGEPFHLHKWIGVALVLVGIIFLARGG 117

Rhizobium sp. (strain NGR234) (taxid: 394)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
449447136	344	PREDICTED: uncharacterized protein LOC10	0.986	0.651	0.843	1e-107
224114565	359	predicted protein [Populus trichocarpa]	0.986	0.623	0.796	1e-107
356552374	343	PREDICTED: uncharacterized protein LOC10	0.986	0.653	0.830	1e-106
356564039	343	PREDICTED: uncharacterized protein LOC10	0.986	0.653	0.821	1e-105
357437377	343	hypothetical protein MTR_1g015820 [Medic	0.986	0.653	0.831	1e-105
297811313	344	hypothetical protein ARALYDRAFT_909170 [	0.986	0.651	0.834	1e-105
22326741	344	uncharacterized protein [Arabidopsis tha	0.986	0.651	0.830	1e-104
255550079	344	conserved hypothetical protein [Ricinus	0.986	0.651	0.861	1e-104
356507006	344	PREDICTED: uncharacterized protein LOC10	0.986	0.651	0.834	1e-101
356514649	338	PREDICTED: uncharacterized protein LOC10	0.986	0.662	0.825	1e-100

>gi|449447136|ref|XP_004141325.1| PREDICTED: uncharacterized protein LOC101210517 [Cucumis sativus] gi|449486673|ref|XP_004157364.1| PREDICTED: uncharacterized protein LOC101228106 [Cucumis sativus]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/224 (84%), Positives = 206/224 (91%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGK+LQKKGTVILPPLSFKLKVIRAYA NK W+IGFLMDIFGA+
Sbjct: 1   MWEPICLTLAAAAGNNIGKILQKKGTVILPPLSFKLKVIRAYAFNKTWIIGFLMDIFGAV 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVS+IQPVSGCGLAILSIFSHFYLKE+MN VDWMGI LAGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSIIQPVSGCGLAILSIFSHFYLKEIMNVVDWMGIMLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQ+ S+IS+F LPWLAF+++ILFVLLNGWL   K QRREQE++EFEVVEEIIYGLESGIL
Sbjct: 121 EQKASAISVFHLPWLAFIMTILFVLLNGWLHFYKRQRREQELMEFEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           FGMASVISK+GF+FLEQGF  +LVP+CI ISICCS TGFYYQ R
Sbjct: 181 FGMASVISKMGFLFLEQGFHQILVPICILISICCSATGFYYQTR 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114565|ref|XP_002332339.1| predicted protein [Populus trichocarpa] gi|222831906|gb|EEE70383.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/241 (79%), Positives = 212/241 (87%), Gaps = 17/241 (7%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-----------------VIRAYA 43
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLSFKLK                 VIRAYA
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTLILPPLSFKLKACIFYPLSFSFFSLPPLVIRAYA 60

Query: 44  VNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM 103
            NKAW+IGFL+DI GALLMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+
Sbjct: 61  ANKAWIIGFLIDICGALLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWI 120

Query: 104 GITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMI 163
           GITLAGIGTIGVGAGGEEQE SS+SIFQLPWLAF+V++LFV+LNGWLR+ +HQRR  EM+
Sbjct: 121 GITLAGIGTIGVGAGGEEQEASSVSIFQLPWLAFLVALLFVVLNGWLRVYRHQRRAHEMM 180

Query: 164 EFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQV 223
           ++EVVEEIIYGLESGILFGMASVISK+GFVFLEQGF  MLVP+C+SISICCS TGFYYQ 
Sbjct: 181 DYEVVEEIIYGLESGILFGMASVISKMGFVFLEQGFSRMLVPICVSISICCSATGFYYQT 240

Query: 224 R 224
           +
Sbjct: 241 Q 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552374|ref|XP_003544543.1| PREDICTED: uncharacterized protein LOC100779611 [Glycine max]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/224 (83%), Positives = 209/224 (93%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE + LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFLMDI GAL
Sbjct: 1   MWESVVLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLMDILGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAFVV ILF+LL+GWLRICK QRREQEM+E++VVEE+IYGLESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFVVFILFILLSGWLRICKCQRREQEMVEYDVVEEVIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           FGM+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTGFYYQ R
Sbjct: 181 FGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGFYYQTR 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564039|ref|XP_003550264.1| PREDICTED: uncharacterized protein LOC100819228 [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/224 (82%), Positives = 208/224 (92%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFL+DIFGAL
Sbjct: 1   MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLIDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAF+V ILF+LL+GWLRICK QRREQEM+E++VVEE+IYG ESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFIVFILFILLSGWLRICKRQRREQEMMEYDVVEEVIYGFESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           FGM+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTG YYQ R
Sbjct: 181 FGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGIYYQTR 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437377|ref|XP_003588964.1| hypothetical protein MTR_1g015820 [Medicago truncatula] gi|355478012|gb|AES59215.1| hypothetical protein MTR_1g015820 [Medicago truncatula]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/225 (83%), Positives = 207/225 (92%), Gaps = 1/225 (0%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIRAYA+NK W IGFLMDIFGAL
Sbjct: 1   MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRAYALNKTWSIGFLMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYL+EVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLQEVMNVVDWVGITLAGFGTIGVGAGGE 120

Query: 121 E-QEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGI 179
           E QE  ++SIF +PWLAFVVSILF+LLNGWLRI K QRREQEM+E++VVEEIIYGLESGI
Sbjct: 121 EQQEMVALSIFHIPWLAFVVSILFILLNGWLRIYKRQRREQEMMEYDVVEEIIYGLESGI 180

Query: 180 LFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           LFGM+SVISK+GF+FLEQGFP +LVP+C+ IS+ CSG GFYYQ R
Sbjct: 181 LFGMSSVISKMGFLFLEQGFPKILVPICLLISVSCSGIGFYYQTR 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811313|ref|XP_002873540.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata] gi|297319377|gb|EFH49799.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/224 (83%), Positives = 203/224 (90%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKVIRAYAVNK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVIRAYAVNKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           FGMASV+SK+GFVF+EQGF  M +P+CISISICCSGTGF+YQ R
Sbjct: 181 FGMASVVSKMGFVFVEQGFSAMFIPMCISISICCSGTGFFYQTR 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326741|ref|NP_196757.2| uncharacterized protein [Arabidopsis thaliana] gi|20260356|gb|AAM13076.1| putative protein [Arabidopsis thaliana] gi|22136174|gb|AAM91165.1| putative protein [Arabidopsis thaliana] gi|332004362|gb|AED91745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/224 (83%), Positives = 203/224 (90%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           FGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQ R
Sbjct: 181 FGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTR 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550079|ref|XP_002516090.1| conserved hypothetical protein [Ricinus communis] gi|223544576|gb|EEF46092.1| conserved hypothetical protein [Ricinus communis]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/224 (86%), Positives = 210/224 (93%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNK+WVIGFLMDI GA+
Sbjct: 1   MWESICLTLAAAAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKSWVIGFLMDICGAM 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+GITLAGIGTIGVGAGGE
Sbjct: 61  LMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWIGITLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE SSIS+FQLPWLAF+V++LF+ LNGWLR+CK +RREQE +E+EV+EEIIYGLESGIL
Sbjct: 121 EQEVSSISVFQLPWLAFIVAVLFIGLNGWLRVCKRERREQETMEYEVIEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           FGMASVISK+ FVFLEQGF  MLVP+CISISIC S TGFYYQ R
Sbjct: 181 FGMASVISKMAFVFLEQGFSRMLVPICISISICSSATGFYYQTR 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507006|ref|XP_003522263.1| PREDICTED: uncharacterized protein LOC100803982 [Glycine max]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/224 (83%), Positives = 207/224 (92%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK WVIGFLMDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWVIGFLMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           FGMASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQ R
Sbjct: 181 FGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTR 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514649|ref|XP_003526017.1| PREDICTED: uncharacterized protein LOC100788141 [Glycine max]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/224 (82%), Positives = 207/224 (92%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK W+IGF+MDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWLIGFVMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNIVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
           FGMASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQ R
Sbjct: 181 FGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTR 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2143044	344	AT5G11960 "AT5G11960" [Arabido	0.986	0.651	0.714	1.2e-81

TAIR|locus:2143044 AT5G11960 "AT5G11960" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 160/224 (71%), Positives = 174/224 (77%)

Query:     1 MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
             MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct:     1 MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query:    61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMXXXXXXXXXXXXXXXXE 120
             LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+                E
Sbjct:    61 LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query:   121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRRXXXXXXXXXXXXXXYGLESGIL 180
             EQE S IS+FQL WLA VV+ILFVLLN WL I K QRR              YGLESGIL
Sbjct:   121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query:   181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
             FGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQ R
Sbjct:   181 FGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTR 224


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.142   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       197   0.00082  111 3  11 22  0.36    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  165 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.12u 0.11s 14.23t   Elapsed:  00:00:01
  Total cpu time:  14.12u 0.11s 14.23t   Elapsed:  00:00:01
  Start:  Fri May 10 03:34:13 2013   End:  Fri May 10 03:34:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_207000001 hypothetical protein (359 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
COG2510	140	COG2510, COG2510, Predicted membrane protein [Func	0.002

>gnl|CDD|225308 COG2510, COG2510, Predicted membrane protein [Function unknown]

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 58  GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113
             LL  RAL +   S + P+    + +  + S  +L E ++   W+GI L  IG I
Sbjct: 80  SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAI 135

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.89
KOG2922	335	consensus Uncharacterized conserved protein [Funct	99.38
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.12
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.9
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.74
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.72
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.71
COG2510	140	Predicted membrane protein [Function unknown]	98.52
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.42
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.32
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.24
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.13
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.03
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.0
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.97
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.95
PRK11689	295	aromatic amino acid exporter; Provisional	97.85
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.81
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.81
PRK15430	296	putative chloramphenical resistance permease RarD;	97.81
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.8
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.79
PRK11272	292	putative DMT superfamily transporter inner membran	97.78
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.77
PRK11431	105	multidrug efflux system protein; Provisional	97.74
COG2076	106	EmrE Membrane transporters of cations and cationic	97.71
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.68
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.67
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.58
PLN00411	358	nodulin MtN21 family protein; Provisional	97.58
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.45
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.39
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.35
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.24
PRK15430	296	putative chloramphenical resistance permease RarD;	97.17
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.11
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	97.1
PRK11689	295	aromatic amino acid exporter; Provisional	97.07
PRK11272	292	putative DMT superfamily transporter inner membran	96.9
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.59
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.58
PLN00411	358	nodulin MtN21 family protein; Provisional	96.08
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	95.97
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.6
KOG4831	125	consensus Unnamed protein [Function unknown]	95.0
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	94.21
PRK13499	345	rhamnose-proton symporter; Provisional	94.17
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.11
PRK10532	293	threonine and homoserine efflux system; Provisiona	93.89
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	93.12
KOG2765	416	consensus Predicted membrane protein [Function unk	92.89
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	92.39
COG2962	293	RarD Predicted permeases [General function predict	91.34
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	88.77
KOG4510	346	consensus Permease of the drug/metabolite transpor	85.35
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	80.47

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.89  E-value=2.1e-23  Score=188.55  Aligned_cols=212  Identities=20%  Similarity=0.272  Sum_probs=148.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhhH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC   80 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~   80 (227)
                      ++|+.+|++++++++.|..+||++..+.++.+.+. +....++|||.||.|+.++.+|..++++|+.++|.++|||+++.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~   85 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL   85 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence            57999999999999999999999999877644322 34568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc-cCCCCCCCCccch-h----hhHHHHHHHHHHHHHHHHHHHHhh
Q 027181           81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISI-F----QLPWLAFVVSILFVLLNGWLRICK  154 (227)
Q Consensus        81 ~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~-~~~~~~~~~~~~~-~----~~~~~~~~~~~~~v~~~~~~~~~~  154 (227)
                      +++++++++++++|||++++||.|+.+++.|.+++. .++++++..+.+. .    ++....-........+.......+
T Consensus        86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~  165 (300)
T PF05653_consen   86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKP  165 (300)
T ss_pred             hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999998776 3333332221111 1    111111111111111111111111


Q ss_pred             hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCccccchHHHHHHHHHhhhhhheeee
Q 027181          155 HQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE---QGFPTMLVPVCISISICCSGTGFYYQV  223 (227)
Q Consensus       155 ~~~~~~~~~~~~~~~a~~lg~aaG~~fG~~Avl~K~~~~~~~---~g~~~l~~~~~~~~~v~~~~~g~~~qt  223 (227)
                      |.++         ..-..+...+++..+++-..+|.......   .|.. .+..|..|.++.+.+.-...|.
T Consensus       166 r~g~---------~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~-~f~~~~~y~l~~~~v~~~~~Q~  227 (300)
T PF05653_consen  166 RYGR---------RNILVYISICSLIGSFTVLSAKAISILIKLTFSGDN-QFTYPLTYLLLLVLVVTAVLQL  227 (300)
T ss_pred             hhcc---------cceEEEEEEeccccchhhhHHHHHHHHHHHHhcCch-hhhhhHHHHHHHHHHHHHHHHH
Confidence            1111         12356788888888999999998553332   3443 3566677776655555444553

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=3.5e-14  Score=128.51  Aligned_cols=120  Identities=24%  Similarity=0.359  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchh-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHH
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGL   82 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~-~~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l   82 (227)
                      +.++|+.+++.++....+||++..+....+.+ .+.-..|++.|.||+|+..+++|-.+++.|+.++|.++|.|+++.++
T Consensus        22 G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsv  101 (335)
T KOG2922|consen   22 GLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSV  101 (335)
T ss_pred             eeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHH
Confidence            56789999999999999999998775542210 11123677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc-cCCCCCC
Q 027181           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQE  123 (227)
Q Consensus        83 ~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~-~~~~~~~  123 (227)
                      +++++++++++||+++..+..|+.++++|..++. -+|++++
T Consensus       102 i~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~  143 (335)
T KOG2922|consen  102 IISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE  143 (335)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence            9999999999999999999999999999998876 3444443

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.12  E-value=2.9e-09  Score=85.61  Aligned_cols=114  Identities=18%  Similarity=0.169  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHH--HHHHHhhhh--hHHHHHHHHHHHHHHHHHHHhhcchhHHHhhh
Q 027181            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK--VIRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS   78 (227)
Q Consensus         3 ~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~--~~~~llr~~--~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~   78 (227)
                      .+.++.+.+.++++.|+.+-|+++++.++.+.+..  .......+|  .-+.|+.++++++.++..+++..|+++..|+.
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~   81 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL   81 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            36778889999999999999999988775443222  122345667  45699999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHH--HhccccchhHHHHHHHHHHHHHHhc
Q 027181           79 GCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        79 ~~~l~~t~~ls~~--~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .....+....+..  ++||++|.++|.|+.++++|+.++.
T Consensus        82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            9888888888875  8999999999999999999999885

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.90  E-value=4.9e-08  Score=76.36  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHhhcchhHHHhhhhHHH
Q 027181            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIG--FLMDIFGALLMLRALSQAPVSVIQPVSGCGL   82 (227)
Q Consensus         5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~W~~G--~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l   82 (227)
                      .++-+.|.++...|+...|.+.+..|....+.        ++..+.+  +.++..++.+...++...|+++.+|+...+.
T Consensus         3 ~~~l~~ai~~ev~g~~~lK~s~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~   74 (111)
T PRK15051          3 WLTLVFASLLSVAGQLCQKQATRPVAIGKRRK--------HIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNF   74 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcchhhh--------HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence            34556778888899999999876544211110        1122333  3678999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        83 ~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      +++.+++.+++|||++.++|.|+.+++.|+++++
T Consensus        75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998875

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.74  E-value=1.4e-07  Score=73.18  Aligned_cols=67  Identities=27%  Similarity=0.399  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccC
Q 027181           51 GFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (227)
Q Consensus        51 G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~~~  118 (227)
                      |......++.+++.|+.+.| ..+.++...+.+|+.+++..++|||+++++|.++.++.+|++++...
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS  107 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            44445588999999999999 69999999999999999999999999999999999999999998643

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.72  E-value=7.1e-08  Score=76.05  Aligned_cols=103  Identities=20%  Similarity=0.329  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHhhhccCCCCchh---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhhh-hHHHHHHHH
Q 027181           12 TAGNNIGKVLQKKGTVILPPLSFK---LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI   87 (227)
Q Consensus        12 A~~~a~g~vlQ~~aa~~~~~~~~~---~~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~-~~~l~~t~~   87 (227)
                      +++-+..+-+-||+++..++...+   ......++++|+++.+++++..|++..+..|...|+|+..|+- +.+.+||++
T Consensus         5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l   84 (113)
T PF10639_consen    5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL   84 (113)
T ss_pred             hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence            345566778888888765443222   3456679999999999999999999999999999999999997 999999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHHHH
Q 027181           88 FSHFYLKEVMNAVDWMGITLAGIGTIG  114 (227)
Q Consensus        88 ls~~~l~~rl~~~ew~gv~l~~~Gv~~  114 (227)
                      .+.++.+|..+++.|.|..+++.|+.+
T Consensus        85 ~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   85 TGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHhcCcccchhHHHHHHHHHcCeee
Confidence            997777777888899999999999864

Many members are annotated as potential transmembrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.71  E-value=2.8e-06  Score=74.92  Aligned_cols=168  Identities=20%  Similarity=0.193  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccC--CC--CCC
Q 027181           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG--GE--EQE  123 (227)
Q Consensus        48 W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~~~--~~--~~~  123 (227)
                      +..+..+|.+.-.+++.++...|.+..|.+....+++|++++.+++|||+++++|.++.+.+.|+.++...  .+  +++
T Consensus        20 ~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~   99 (244)
T PF04142_consen   20 LAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSS   99 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccccc
Confidence            56888899999999999999999999999999999999999999999999999999999999999988621  11  111


Q ss_pred             CCcc----chhhhHHHHHHHHHHHHHHHHH--HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 027181          124 PSSI----SIFQLPWLAFVVSILFVLLNGW--LRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQ  197 (227)
Q Consensus       124 ~~~~----~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~a~~lg~aaG~~fG~~Avl~K~~~~~~~~  197 (227)
                      .+..    ...........+ +....+-+.  .+..+--++..   .....|-+-+ -.-|+.+.+.....+......+.
T Consensus       100 ~~~~~~~~~~~~~~~G~~~v-l~~~~~S~~agVy~E~~lK~~~---~s~~~~N~qL-~~~gi~~~~~~~~~~~~~~~~~~  174 (244)
T PF04142_consen  100 SSSVHHDASNQNPLLGLLAV-LAAAFLSGFAGVYFEKLLKRSN---VSLWIQNMQL-YLFGILFNLLALLLSDGSAISES  174 (244)
T ss_pred             ccccccccccchhHhHHHHH-HHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHH-HHHHHHHHHHHHhcccccccccC
Confidence            1110    111211111111 111111111  11111112211   1123344444 34566666666666655555566


Q ss_pred             CccccchHHHHHHHHHhhhhhhe
Q 027181          198 GFPTMLVPVCISISICCSGTGFY  220 (227)
Q Consensus       198 g~~~l~~~~~~~~~v~~~~~g~~  220 (227)
                      |+.+-++++.+.....-+..|..
T Consensus       175 g~f~G~~~~~~~~i~~~a~gGll  197 (244)
T PF04142_consen  175 GFFHGYSWWVWIVIFLQAIGGLL  197 (244)
T ss_pred             CchhhcchHHHHHHHHHHHhhHH
Confidence            77777888877765555555543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.52  E-value=5.1e-07  Score=72.72  Aligned_cols=115  Identities=24%  Similarity=0.373  Sum_probs=89.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-chhHHHHH-------HHhhhhh-----------HH---HHHHHHHHH
Q 027181            1 MWELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVIR-------AYAVNKA-----------WV---IGFLMDIFG   58 (227)
Q Consensus         1 ~~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~-~~~~~~~~-------~llr~~~-----------W~---~G~~~~~~G   58 (227)
                      |.-.+..|++||+..+....+-|.+-+...+. ..--|.+.       -.+...+           |.   .+-+...++
T Consensus         1 m~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls   80 (140)
T COG2510           1 MMAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS   80 (140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence            44567899999999999999999998765432 11111111       1111112           22   223567889


Q ss_pred             HHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        59 ~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      ..+.+.|+..++.|.|-|+--.+.+++..+|..++|||+|..+|+|+.+++.|.+++
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv  137 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV  137 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence            999999999999999999999999999999999999999999999999999998776

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.42  E-value=1e-05  Score=71.72  Aligned_cols=113  Identities=16%  Similarity=0.277  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCch--h--HHH-H--HHH-------hh--hhhHH----HHHHHHHHHHHHHH
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K--LKV-I--RAY-------AV--NKAWV----IGFLMDIFGALLML   63 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~--~--~~~-~--~~l-------lr--~~~W~----~G~~~~~~G~~l~~   63 (227)
                      +.++.+.+|++++..+.+.||..++.+....  .  ... +  ...       .+  ++.|+    .+.......+.+.+
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999988766443211  0  000 0  001       11  11222    23345777888999


Q ss_pred             HHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        64 ~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .|+...|.+.++|+...+-+++.+++..++|||+++++|.|+.++..|+.++.
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998775

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.32  E-value=2.1e-05  Score=62.62  Aligned_cols=97  Identities=19%  Similarity=0.256  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhhh-hHHHHH
Q 027181            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI   84 (227)
Q Consensus         6 ~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~-~~~l~~   84 (227)
                      ++=++|.++--.++...|.+....              +..+|...+.+..+++.+...|+...|+++.+|+- +.+.+.
T Consensus         5 l~L~~Ai~~Ev~~t~~LK~s~g~~--------------~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~   70 (120)
T PRK10452          5 ILLALAIATEITGTLSMKWASVSE--------------GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILF   70 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence            334455666677777777663221              11236678889999999999999999999999996 799999


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        85 t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      +..++.+++||+++..++.|+.++++|++++-
T Consensus        71 ~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         71 ITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998884

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.24  E-value=2.6e-06  Score=76.90  Aligned_cols=103  Identities=20%  Similarity=0.304  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhhhccCCCCchhHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHH
Q 027181           13 AGNNIGKVLQKKGTVILPPLSFKLKVIRA----YAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIF   88 (227)
Q Consensus        13 ~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~----llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~l   88 (227)
                      +|.++=.+++.|+.++....+.  ..+..    -++-..+..+.+||+.|+.+++++|.+-..|-.|++++.-++|+.++
T Consensus        52 lCl~vf~lir~~sn~~g~~s~~--~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglf  129 (372)
T KOG3912|consen   52 LCLAVFKLIRLRSNGQGVSSDL--DSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLF  129 (372)
T ss_pred             HHHHHHHHHHHhhcCCCccccc--ccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHH
Confidence            6777777888888765332221  11111    12223477899999999999999999999999999999999999999


Q ss_pred             HHHHhccccchhHHHHHHHHHHHHHHhcc
Q 027181           89 SHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (227)
Q Consensus        89 s~~~l~~rl~~~ew~gv~l~~~Gv~~l~~  117 (227)
                      |.-+++++++.++|.|+..+..|+++++.
T Consensus       130 st~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen  130 STMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            99999999999999999999999999973

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.13  E-value=7.9e-05  Score=68.84  Aligned_cols=64  Identities=20%  Similarity=0.315  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        53 ~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .+|..|-.+...|+.+-+++-+|.+.+.+.+++.++|..++|+|.+..+|.|+.+++.|++++.
T Consensus        87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~  150 (334)
T PF06027_consen   87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV  150 (334)
T ss_pred             HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence            4799999999999999999999999999999999999999999999999999999999998876

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.03  E-value=0.00018  Score=56.41  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhhcchhHHHhhh-hHHHH
Q 027181            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA   83 (227)
Q Consensus         6 ~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~-W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~-~~~l~   83 (227)
                      ++=++|.++--.++...|.+..-               +++. +...+.++.+.+.+...|+...|+++.+|+- +.+.+
T Consensus         5 l~L~~a~~~Ev~~~~~lK~s~gf---------------~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v   69 (110)
T PRK09541          5 IYLGGAILAEVIGTTLMKFSEGF---------------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC---------------CchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence            34456677777778777776311               1222 3467778999999999999999999999995 68999


Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        84 ~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .+.+.+.+++||+++..++.|+.+++.|++++-
T Consensus        70 ~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999884

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.00  E-value=0.00027  Score=63.12  Aligned_cols=114  Identities=15%  Similarity=0.184  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhH-H-------HHHHHhh------h-hh----HHHHHHHHHHHHHHHH
Q 027181            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-K-------VIRAYAV------N-KA----WVIGFLMDIFGALLML   63 (227)
Q Consensus         3 ~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-~-------~~~~llr------~-~~----W~~G~~~~~~G~~l~~   63 (227)
                      .|.+++++++++++...++.|+..++.+...... .       .......      + ..    ...|+....+++.+++
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~  227 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999888765433221100 0       0000111      1 11    3466677889999999


Q ss_pred             HHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        64 ~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .++...|.+.+.++...+-+++.+++.+++||+++..+|+|.+++..|.+...
T Consensus       228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887775

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.97  E-value=9.4e-05  Score=55.93  Aligned_cols=85  Identities=21%  Similarity=0.291  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhcchhHHHhhh-hHHHHHHH
Q 027181            9 LAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS   86 (227)
Q Consensus         9 l~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~W~-~G~~~~~~G~~l~~~AL~~~plsvVQpl~-~~~l~~t~   86 (227)
                      ++|.++...++...|.+..               .+++.|. ....++..++.+...|+...|+++.+|+. +.+.+.+.
T Consensus         7 ~~a~~~ev~~~~~lK~s~g---------------~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~   71 (93)
T PF00893_consen    7 LLAILFEVVGTIALKASHG---------------FTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVT   71 (93)
T ss_dssp             HHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh---------------hcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            4556667777877777321               1223333 45558999999999999999999999997 59999999


Q ss_pred             HHHHHHhccccchhHHHHHHHH
Q 027181           87 IFSHFYLKEVMNAVDWMGITLA  108 (227)
Q Consensus        87 ~ls~~~l~~rl~~~ew~gv~l~  108 (227)
                      +.+.+++||++|..+|.|+.++
T Consensus        72 ~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   72 LVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHH--------HHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHhheeeC
Confidence            9999999999999999999864

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.95  E-value=0.00023  Score=61.41  Aligned_cols=111  Identities=16%  Similarity=0.138  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc--hhH-H--------HHHHHhh-------hhhHH----HHHHHHHHHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--FKL-K--------VIRAYAV-------NKAWV----IGFLMDIFGA   59 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~--~~~-~--------~~~~llr-------~~~W~----~G~~~~~~G~   59 (227)
                      +.++.++++++++++..++++|+..++.+...  ... +        ....+..       ++.|.    .+.....+++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            35888999999999999999999876544211  100 0        0011111       11232    3444567899


Q ss_pred             HHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Q 027181           60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (227)
Q Consensus        60 ~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv  112 (227)
                      .+++.++...|.+.+..+...+-+++.+++..++||+++..+|.|+.++..|+
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999998875

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.85  E-value=0.00048  Score=61.59  Aligned_cols=112  Identities=10%  Similarity=0.047  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCch-----hHHHHH-HHh-------hhh-hHH----HHHHHHHHHHHHHHH
Q 027181            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-----KLKVIR-AYA-------VNK-AWV----IGFLMDIFGALLMLR   64 (227)
Q Consensus         3 ~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-----~~~~~~-~ll-------r~~-~W~----~G~~~~~~G~~l~~~   64 (227)
                      .+..++++|++|++.+++++||-.++.+....     ..-... ...       -++ .|.    .| ....+++.++..
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~  234 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV  234 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            37789999999999999999997654332111     000000 000       011 122    22 246778999999


Q ss_pred             HHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        65 AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      ++...|.+.+.+..-.+-+++.+++..++||+++..+|+|.+++..|+.+.
T Consensus       235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999999999999999998665

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.81  E-value=6.8e-05  Score=56.69  Aligned_cols=66  Identities=23%  Similarity=0.296  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      .|......++.+...++...|.+.+.++...+-+++.+++..++||+++.++|.|+.+++.|+.++
T Consensus        59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   59 LGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            444457899999999999999999999999999999999999999999999999999999998765

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.81  E-value=0.00072  Score=53.02  Aligned_cols=97  Identities=14%  Similarity=0.156  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhcchhHHHhhh-hHH
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCG   81 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~W~-~G~~~~~~G~~l~~~AL~~~plsvVQpl~-~~~   81 (227)
                      +...=++|.++--.++...|.+..               .++|.|. .-..+..+.+.+...|+...|+++.+++- +.+
T Consensus         8 ~~~~L~~Ai~~Ev~~t~~Lk~s~g---------------f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG   72 (109)
T PRK10650          8 HAAWLALAIVLEIVANIFLKFSDG---------------FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFG   72 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---------------CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence            334444556666666666665521               1233333 33446888999999999999999999996 689


Q ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        82 l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      .+.+.+.+.+++||+++..++.|+.+++.|++.+
T Consensus        73 ~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         73 IAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999876

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.81  E-value=0.00051  Score=61.42  Aligned_cols=114  Identities=14%  Similarity=0.080  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCch-hHH-------HH------------HHHhhhhhH----HHHHHHHHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK-------VI------------RAYAVNKAW----VIGFLMDIF   57 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~-------~~------------~~llr~~~W----~~G~~~~~~   57 (227)
                      ..++.+.++++++.+.....-|.. .+.|..+. -.|       .+            ++..+++++    ..+......
T Consensus         7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (296)
T PRK15430          7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG   85 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            457888899999998888777654 33332221 001       00            000112222    145556778


Q ss_pred             HHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        58 G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .+.+++.|+...|.+....+..+.=+++.+++..++|||+++++|.|+.+..+|++++.
T Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999998774

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.80  E-value=0.00015  Score=64.19  Aligned_cols=112  Identities=18%  Similarity=0.252  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCc-h----hHHH--------HHHH--------hhhhhHH----HHHHHHHHH
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLS-F----KLKV--------IRAY--------AVNKAWV----IGFLMDIFG   58 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~----~~~~--------~~~l--------lr~~~W~----~G~~~~~~G   58 (227)
                      ++.+++++++|++..+++.|+..++.++.. .    ....        ....        ..++.|+    .+.....++
T Consensus       145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA  224 (281)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence            556789999999999999888654433211 0    0000        0000        0011122    334457788


Q ss_pred             HHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        59 ~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      +.+++.+++..|.+.+.++.-.+-+++.+++.+++||+++..+|+|..++..|+.++
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            999999999999999999999999999999999999999999999999999998763

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.79  E-value=0.0005  Score=59.30  Aligned_cols=68  Identities=16%  Similarity=0.082  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 027181           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (227)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~~  117 (227)
                      .|.....+...+.+.|+.+.|.+.+.++....=+++.+++..++|||+++++|.|+.+..+|+.++..
T Consensus        52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            55556778889999999999999999999999999999999999999999999999999999988753

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.78  E-value=0.00079  Score=60.01  Aligned_cols=114  Identities=11%  Similarity=0.131  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCch-------hHH-HHHHHh------h--h-hhHH----HHHHHHHHHHHH
Q 027181            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-------KLK-VIRAYA------V--N-KAWV----IGFLMDIFGALL   61 (227)
Q Consensus         3 ~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-------~~~-~~~~ll------r--~-~~W~----~G~~~~~~G~~l   61 (227)
                      .+.++++++++|++..++.+||..++.+....       ..- ......      .  + ..|.    .|.....+++.+
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999986543221100       000 000000      0  1 1233    344467788999


Q ss_pred             HHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        62 ~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      +..++...|.+.+..+...+-+++.+++..++||+++..+|+|..++..|+.+..
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998774

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.77  E-value=0.0023  Score=57.50  Aligned_cols=113  Identities=18%  Similarity=0.114  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCch-hH--H-HHH----HHhhhh-----h-HHHHHHH---HHHHHHHHHHHH
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KL--K-VIR----AYAVNK-----A-WVIGFLM---DIFGALLMLRAL   66 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~--~-~~~----~llr~~-----~-W~~G~~~---~~~G~~l~~~AL   66 (227)
                      +++++++++++.+.--+..|+-. ..+.... +.  . .+.    ...|+|     . |..|+..   ...|..+++.|.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai   80 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLGTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM   80 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            57889999999876555555432 2111110 00  1 000    112322     2 3446665   888889999999


Q ss_pred             hhcchhHHHhhhh-HHHHHHHHHHHHHhccccchhH----HHHHHHHHHHHHHhcc
Q 027181           67 SQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGA  117 (227)
Q Consensus        67 ~~~plsvVQpl~~-~~l~~t~~ls~~~l~~rl~~~e----w~gv~l~~~Gv~~l~~  117 (227)
                      ....+++-.|+-. ..+++..+.+..++||+.+++|    +.|+.++++|++++..
T Consensus        81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~  136 (290)
T TIGR00776        81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSR  136 (290)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEe
Confidence            9999999999987 8889999999999999999999    8899999999888753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.74  E-value=0.00081  Score=52.33  Aligned_cols=68  Identities=24%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHhhh-hHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        48 W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~-~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      +..-..+..+.+.+...|+...|+++.+++- +.+.+.+.+.+.+++||+++..++.|+.++..|++.+
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            3455668999999999999999999999996 6999999999999999999999999999999999887

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.71  E-value=0.0011  Score=51.90  Aligned_cols=68  Identities=19%  Similarity=0.319  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHhhh-hHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        48 W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~-~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      ...-..++.+.|.+...|+...|+++.+++- +.+.+.+...+..++||+++..++.|+.+++.|++.+
T Consensus        33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            3456668999999999999999999999994 8999999999999999999999999999999999877

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.68  E-value=0.0026  Score=56.87  Aligned_cols=112  Identities=18%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCch-hHHH------HHHHhhhh--hHH--H--HHHHHHHHHHHHHHHHhh-cc
Q 027181            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAYAVNK--AWV--I--GFLMDIFGALLMLRALSQ-AP   70 (227)
Q Consensus         5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~~------~~~llr~~--~W~--~--G~~~~~~G~~l~~~AL~~-~p   70 (227)
                      .+++++++++.+.....-|.+..+.+.... -.|.      +.-+.+++  .|.  .  |.......+.+.+.++.+ .|
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   85 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMP   85 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            356778888888888888877766554321 1121      11112221  121  1  222223334566677777 58


Q ss_pred             hhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           71 VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        71 lsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .+....+....-+++.+++.+++|||+++++|.|+.+..+|+.++.
T Consensus        86 a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         86 AGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence            8888888888889999999999999999999999999999988775

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.67  E-value=0.0017  Score=58.14  Aligned_cols=114  Identities=17%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-hh----HHH-------HHHHh-------------hhhh-HH----HH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK----LKV-------IRAYA-------------VNKA-WV----IG   51 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~~----~~~-------~~~ll-------------r~~~-W~----~G   51 (227)
                      +.++.++++++++++..+++||+-.++.++.. ..    ...       .....             .++. |+    .|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            35889999999999999999998654322211 00    000       00000             0111 22    24


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        52 ~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      +....+++.+++.++...+..-+.++...+=+++.+++..+++|+++..+|+|..+++.|+.+.
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            4567788899999999889989999999999999999999999999999999999999998765

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.58  E-value=0.0032  Score=56.17  Aligned_cols=66  Identities=15%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .|.. ......++..++.+.|.+..|.+..+.-+|+.+++.+++|||+++++|.|+.+.+.|+.+.+
T Consensus        71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            4444 57778999999999999999999999999999999999999999999999999999997653

specificities overlap.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.58  E-value=0.0017  Score=60.36  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCch-h---------HHHHHHHhhh----hhHH-------HHHH----HHHH
Q 027181            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-K---------LKVIRAYAVN----KAWV-------IGFL----MDIF   57 (227)
Q Consensus         3 ~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~---------~~~~~~llr~----~~W~-------~G~~----~~~~   57 (227)
                      ++..+++.|++|.++.+++|+|-.++-|+... .         +-.+..+...    +.|.       ..+.    ...+
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l  268 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV  268 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence            47889999999999999999998776554210 0         0000111111    1121       1121    2345


Q ss_pred             HHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        58 G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      ++.+|..++...+.+.+-+..-.+=+|+.+++..+++|+++..+++|.+++..|+.+..
T Consensus       269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999998875

>TIGR00688 rarD rarD protein

Probab=97.45  E-value=0.0036  Score=54.39  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCch-hHH----H--HHH-------------Hhh---hhhHHH----HHHHHH
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK----V--IRA-------------YAV---NKAWVI----GFLMDI   56 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~----~--~~~-------------llr---~~~W~~----G~~~~~   56 (227)
                      ++.+.++++++.+...+..|. ..+.+..+. -.|    .  +.-             ..+   ++.|+.    ...+..
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   81 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG   81 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            678889999999999888887 333333221 001    0  000             011   111221    122356


Q ss_pred             HHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        57 ~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      ....+.+.|+...|.+....+..+.=+++.+++.+++|||+++++|.++.+...|++++.
T Consensus        82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999999999999999999999987764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.39  E-value=0.002  Score=57.91  Aligned_cols=69  Identities=13%  Similarity=0.106  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        48 W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      |..-..++.++..++..||.+.|...-+....+.++++.+++..++|||.+++||.++.++++|+++..
T Consensus        67 ~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~  135 (303)
T PF08449_consen   67 YAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT  135 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence            556667899999999999999999999999999999999999999999999999999999999998886

; GO: 0055085 transmembrane transport

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.35  E-value=0.0042  Score=53.37  Aligned_cols=69  Identities=23%  Similarity=0.261  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHH-HHhccccchhHHHHHHHHHHHHHHhccC
Q 027181           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (227)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~-~~l~~rl~~~ew~gv~l~~~Gv~~l~~~  118 (227)
                      .+......+..+.+.++...|.+..+++....-+++.+++. +++|||+++++|.++.+...|+.++...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~  144 (292)
T COG0697          75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG  144 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC
Confidence            56667888999999999999999999999999999999997 7779999999999999999999888643

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.24  E-value=0.0091  Score=51.26  Aligned_cols=114  Identities=20%  Similarity=0.240  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhH-------HHH--HHHhh------hh-hHH----HHHHHHHHHHHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KVI--RAYAV------NK-AWV----IGFLMDIFGALL   61 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-------~~~--~~llr------~~-~W~----~G~~~~~~G~~l   61 (227)
                      +.++.+++.++++.+..++.+++-. +.+......       ..+  .....      +. .|.    .|.....+++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999776 222111110       000  00011      11 122    333344568999


Q ss_pred             HHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        62 ~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      ++.++...|...+.++...+.+++..++..+++|+++..++.|+.++..|+.+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999987764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.17  E-value=0.013  Score=52.32  Aligned_cols=109  Identities=11%  Similarity=0.018  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCch------hH-HHHHH----------Hhhhhh-HHH----HHHHHHHHHHHHHH
Q 027181            7 LTLAATAGNNIGKVLQKKGTVILPPLSF------KL-KVIRA----------YAVNKA-WVI----GFLMDIFGALLMLR   64 (227)
Q Consensus         7 lAl~aA~~~a~g~vlQ~~aa~~~~~~~~------~~-~~~~~----------llr~~~-W~~----G~~~~~~G~~l~~~   64 (227)
                      +.+.++++++..++++||...+......      .+ .....          ...+|. |+.    ......+++.+...
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~  232 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA  232 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778999999999999987532211110      00 00000          001121 111    11145588999999


Q ss_pred             HHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        65 AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      +++..|.+.+.++.-.+-+++.+++..+++|+++..++.|.+++..++.++
T Consensus       233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~  283 (296)
T PRK15430        233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF  283 (296)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999997776555

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.11  E-value=0.007  Score=55.78  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        58 G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      +...+..++.+.|++..|.+...+=+|+++++.+++|||+++++|.++.+++.|+.+..
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            45567799999999999999999999999999999999999999999999999998875

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.22  Score=46.34  Aligned_cols=166  Identities=17%  Similarity=0.178  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc---cCCCCCCC
Q 027181           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG---AGGEEQEP  124 (227)
Q Consensus        48 W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~---~~~~~~~~  124 (227)
                      +-.+..++.+=--+|+++++..|.+..|..-..-+..|++++..+||||+++++|....+...|+.++-   ..+.+...
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            566777887777799999999999999999999999999999999999999999999999999998884   11111111


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHH-HH--HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccc
Q 027181          125 SSISIFQLPWLAFVVSILFVLLNG-WL--RICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPT  201 (227)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~~-~~--~~~~~~~~~~~~~~~~~~~a~~lg~aaG~~fG~~Avl~K~~~~~~~~g~~~  201 (227)
                      +.++ ... +.-...++ ..|... ++  +...--++.+.   .-..|=+-+.. -|+.|++.....+..-....+|+..
T Consensus       175 ~~~~-~n~-~~G~~avl-~~c~~SgfAgvYfEkiLK~s~~---s~wi~NiqL~~-~g~~f~~l~~~~~d~~~i~~~gff~  247 (345)
T KOG2234|consen  175 ESSA-QNP-FLGLVAVL-VACFLSGFAGVYFEKILKGSNV---SLWIRNIQLYF-FGILFNLLTILLQDGEAINEYGFFY  247 (345)
T ss_pred             CCcc-cch-hhhHHHHH-HHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHH-HHHHHHHHHHhhccccccccCCccc
Confidence            1111 111 11111111 222222 11  11111111000   01223333332 4777888887777544322567777


Q ss_pred             cchHHHHHHHHHhhhhhhe
Q 027181          202 MLVPVCISISICCSGTGFY  220 (227)
Q Consensus       202 l~~~~~~~~~v~~~~~g~~  220 (227)
                      -++...+.+.+.-+..|.+
T Consensus       248 G~s~~vw~vVl~~a~gGLl  266 (345)
T KOG2234|consen  248 GYSSIVWLVVLLNAVGGLL  266 (345)
T ss_pred             cccHHHHHHHHHHhccchh
Confidence            7777777776666666654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.07  E-value=0.021  Score=50.96  Aligned_cols=113  Identities=14%  Similarity=-0.022  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCch-hHHH-----HHHHh------hhhhH---HHHHHHHHHHHHHHHHHHhh
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV-----IRAYA------VNKAW---VIGFLMDIFGALLMLRALSQ   68 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~~-----~~~ll------r~~~W---~~G~~~~~~G~~l~~~AL~~   68 (227)
                      +.++++.+.++-+.....-|.+..+.|+... ..|.     +.-..      |+..|   ..+.........+++.++.+
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~   84 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY   84 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4567778888888888888888777765432 1111     11111      11112   12222233334445556543


Q ss_pred             ----cchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           69 ----APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        69 ----~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                          .|.+....+....=+++.+++..++|||+++++|.|+.+...|+.++.
T Consensus        85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence                455556667777888999999999999999999999999999998875

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.90  E-value=0.021  Score=50.86  Aligned_cols=66  Identities=20%  Similarity=0.318  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHH-hhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        50 ~G~~~~~~G~~l~~~AL-~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .|......++.+.+.+. ...|.+....+....=+++.+++.+ +|||+++++|.|+.+..+|+.++.
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            34444445677888888 9999999999999999999999975 799999999999999999988774

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.59  E-value=0.042  Score=49.30  Aligned_cols=112  Identities=21%  Similarity=0.146  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCch----hH-----HH--HHHH-----hhhhhHH----HHHHHHHHHHHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----KL-----KV--IRAY-----AVNKAWV----IGFLMDIFGALL   61 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~----~~-----~~--~~~l-----lr~~~W~----~G~~~~~~G~~l   61 (227)
                      +.++..+++|+++++.-...=|...  .++.+.    -.     ..  ...+     ..++.++    .|+. -.+++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence            4689999999999988777766542  222111    00     00  0011     0111222    4444 5788888


Q ss_pred             HHHHHh-hcchhHHHhhhhHHHHHHHHHHHHHhccccchhHH----HHHHHHHHHHHHhc
Q 027181           62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGVG  116 (227)
Q Consensus        62 ~~~AL~-~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew----~gv~l~~~Gv~~l~  116 (227)
                      .+.++. ..+.+...++...+.+.+.+.+.+++||+.+++|+    .|.+++..|+.+.+
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            889999 99999999999999999999999999999999999    99999999987764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.58  E-value=0.055  Score=48.62  Aligned_cols=113  Identities=15%  Similarity=0.197  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-hhHHHH--------------HHHhhhhhHH-HHH----HHHHHHHHHH
Q 027181            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FKLKVI--------------RAYAVNKAWV-IGF----LMDIFGALLM   62 (227)
Q Consensus         3 ~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~~~~~~--------------~~llr~~~W~-~G~----~~~~~G~~l~   62 (227)
                      .++.+|+.+..|.+.=-+.-||..+..+... ......              ..-+.+|.-+ .++    .-..+=|.++
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHH
Confidence            4788999999999888888888886443321 111111              1112233322 222    3355567899


Q ss_pred             HHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           63 LRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        63 ~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      .+||+-.|-...--+++.+=.+++..+..++||++|..||.++.+++.+....
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999988876544

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.08  E-value=1.2  Score=41.40  Aligned_cols=59  Identities=19%  Similarity=0.186  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHH------hccccchhHHHHHHHHHHHHHHhc
Q 027181           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        58 G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~------l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .+.+++.++.+.|.+..--+..+.=+++.++++++      +|||+++++|.|+.++..|+.++.
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~  155 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI  155 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence            44578999999999999999999999999999999      699999999999999999987764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=95.97  E-value=0.12  Score=46.04  Aligned_cols=115  Identities=10%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCchhH-----HH----HHHHh-h-----h-------------hhHHHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTV--ILPPLSFKL-----KV----IRAYA-V-----N-------------KAWVIG   51 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~--~~~~~~~~~-----~~----~~~ll-r-----~-------------~~W~~G   51 (227)
                      +.|.+++++|++++++.++++||-.+  +.+......     ..    ..... .     .             ..|...
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            45888999999999999999998765  322211100     00    00000 0     0             012112


Q ss_pred             HHHHHHHH----HHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           52 FLMDIFGA----LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        52 ~~~~~~G~----~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .......+    .+++.++...+.+-........=+++..++..+++|+++..++.|..++..|+.+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            11111122    344567888888888888888889999999999999999999999999999987774

specificities overlap.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.60  E-value=1.3  Score=40.03  Aligned_cols=168  Identities=14%  Similarity=0.236  Sum_probs=102.3

Q ss_pred             HHHHHH---HHHHHHHHHHHHHhhcchhHHHhhh-hHHHHHHHHHHHHHhccccchhHHH----HHHHHHHHHHHhccCC
Q 027181           48 WVIGFL---MDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVGAGG  119 (227)
Q Consensus        48 W~~G~~---~~~~G~~l~~~AL~~~plsvVQpl~-~~~l~~t~~ls~~~l~~rl~~~ew~----gv~l~~~Gv~~l~~~~  119 (227)
                      |+.+++   +-.+|..+|+.++...-+|.-.|+. +..|+.+.+.+.+++||.-+..++.    +++++++|+.+-...+
T Consensus        45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~  124 (269)
T PF06800_consen   45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD  124 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence            444444   5678999999999999999999997 8899999999999999988888876    4555667766665222


Q ss_pred             CCCC-C-CccchhhhHHHHHHHHHHHH-----------------------HHHHHHHHhh-hcchhhhHHHHHHHHHHHH
Q 027181          120 EEQE-P-SSISIFQLPWLAFVVSILFV-----------------------LLNGWLRICK-HQRREQEMIEFEVVEEIIY  173 (227)
Q Consensus       120 ~~~~-~-~~~~~~~~~~~~~~~~~~~v-----------------------~~~~~~~~~~-~~~~~~~~~~~~~~~a~~l  173 (227)
                      ++++ . ++....+-....+...+.-.                       .+.+...... .++..       ..+....
T Consensus       125 ~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~-------~~k~~~~  197 (269)
T PF06800_consen  125 KKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNLFSKKPF-------FEKKSWK  197 (269)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhhcccccc-------cccchHH
Confidence            2211 1 11111111000010000000                       0000000011 01111       1134677


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCccccchHHHHHHHHHhhhhhheeeeee
Q 027181          174 GLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRV  225 (227)
Q Consensus       174 g~aaG~~fG~~Avl~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~g~~~qt~~  225 (227)
                      ...+|+.|+..+...=...+  .-|...-+...+..+ ++.+..|.++-.-.
T Consensus       198 nil~G~~w~ignl~~~is~~--~~G~a~af~lSQ~~v-vIStlgGI~il~E~  246 (269)
T PF06800_consen  198 NILTGLIWGIGNLFYLISAQ--KNGVATAFTLSQLGV-VISTLGGIFILKEK  246 (269)
T ss_pred             hhHHHHHHHHHHHHHHHhHH--hccchhhhhHHhHHH-HHHHhhhheEEEec
Confidence            89999999999998866554  336666677777776 68888888865443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=95.00  E-value=0.074  Score=41.86  Aligned_cols=77  Identities=25%  Similarity=0.406  Sum_probs=65.4

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhhh-hHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHH
Q 027181           37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM-NAVDWMGITLAGIGTIG  114 (227)
Q Consensus        37 ~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl~-~~~l~~t~~ls~~~l~~rl-~~~ew~gv~l~~~Gv~~  114 (227)
                      +....++.+..++.+++++-.|+.+.+.-|+..|+++.-|+. +....||+..+..+ +|++ .++...|..+++.|+.+
T Consensus        44 qe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~L  122 (125)
T KOG4831|consen   44 QEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWL  122 (125)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhh
Confidence            566778888999999999999999999999999999999997 77999999988765 5554 46667788888888753

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=94.21  E-value=0.82  Score=42.44  Aligned_cols=115  Identities=16%  Similarity=0.110  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCch--hHHHH-------------HHHhhhhhHHHHHHHHHHHHH-HHHHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF--KLKVI-------------RAYAVNKAWVIGFLMDIFGAL-LMLRA   65 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~--~~~~~-------------~~llr~~~W~~G~~~~~~G~~-l~~~A   65 (227)
                      .+|-+++++||.++++.+|+|++-.++.|..+.  -.+..             +.-+++-.|-.......+|+. +++.-
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~  246 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF  246 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence            357789999999999999999999887654321  00000             001111123222222333333 34444


Q ss_pred             HhhcchhH-------HHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           66 LSQAPVSV-------IQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        66 L~~~plsv-------VQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      +...|..+       +..=+-++-+.++++..++.|++++..-+.|.+++++|+++..
T Consensus       247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~  304 (334)
T PF06027_consen  247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN  304 (334)
T ss_pred             HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence            44444432       3333456677889999999999999999999999999988875

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.17  E-value=3.3  Score=38.72  Aligned_cols=114  Identities=18%  Similarity=0.063  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCC-C-----Cc-------------hhHHHHHHHhhh---hhHHHHHH---HHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILP-P-----LS-------------FKLKVIRAYAVN---KAWVIGFL---MDI   56 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~-~-----~~-------------~~~~~~~~llr~---~~W~~G~~---~~~   56 (227)
                      .++++..+++++|++.=.+-||+. ++=+ +     ..             ...+.+..++++   ..|..+++   +=.
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W~   84 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALWG   84 (345)
T ss_pred             HHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            468999999999999888899883 3211 0     00             011223333332   23444443   567


Q ss_pred             HHHHHHHHHHhhcchhHHHhhh-hHHHHHHHHHHHHHhcccc---chhH----HHHHHHHHHHHHHhc
Q 027181           57 FGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM---NAVD----WMGITLAGIGTIGVG  116 (227)
Q Consensus        57 ~G~~l~~~AL~~~plsvVQpl~-~~~l~~t~~ls~~~l~~rl---~~~e----w~gv~l~~~Gv~~l~  116 (227)
                      +|-..|..+..+.-+|+-+|+. +..++++.++...++||--   +..+    ..|++++++|+++.+
T Consensus        85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s  152 (345)
T PRK13499         85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG  152 (345)
T ss_pred             hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999995 8899999999999998632   3333    457777888887776

>TIGR00803 nst UDP-galactose transporter

Probab=94.11  E-value=0.42  Score=40.74  Aligned_cols=112  Identities=14%  Similarity=0.056  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc----hhH------HHHHHHh--------------h-hhhHHHHHHHHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS----FKL------KVIRAYA--------------V-NKAWVIGFLMDI   56 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~----~~~------~~~~~ll--------------r-~~~W~~G~~~~~   56 (227)
                      +.++...+.+..+.+...+.|++.-++.+..-    .+.      -......              . ++..|.-..+..
T Consensus        84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  163 (222)
T TIGR00803        84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV  163 (222)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence            34555566677778899999999865432110    000      0000000              0 122334444566


Q ss_pred             HHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 027181           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI  113 (227)
Q Consensus        57 ~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~  113 (227)
                      +|..+-...+.+.+....-.....+.+++.++|.++++|+++..+|.|+.++..|+.
T Consensus       164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            677777777888888889999999999999999999999999999999999887754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=93.89  E-value=4.4  Score=36.01  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCch-hHH------HHHHH-------hhhhhH----HHHHHHHHHHHHHHH
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK------VIRAY-------AVNKAW----VIGFLMDIFGALLML   63 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~------~~~~l-------lr~~~W----~~G~~~~~~G~~l~~   63 (227)
                      +.++.+.+++.++.+.+...-|.+..+.|.... -.|      .+.-+       .+++.|    +.|. +......+.+
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~   89 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGV-SLGGMNYLFY   89 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence            357889999999999999998888766554331 001      00001       112223    3444 3566677788


Q ss_pred             HHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        64 ~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      .++...|.+..-.+..+.-+++.+++    +||.+  ++.++.+...|+.++.
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~  136 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLL  136 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheee
Confidence            89999999987666655555555554    25544  4556666677776654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=93.12  E-value=2.5  Score=38.94  Aligned_cols=114  Identities=10%  Similarity=0.139  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCC----Cchh-H-------HH---H-HHHhh-----hh----------h--H
Q 027181            2 WELICLTLAATAGNNIGKVLQKKGTVILPP----LSFK-L-------KV---I-RAYAV-----NK----------A--W   48 (227)
Q Consensus         2 ~~av~lAl~aA~~~a~g~vlQ~~aa~~~~~----~~~~-~-------~~---~-~~llr-----~~----------~--W   48 (227)
                      |.|.+++++|+++.+.-+++.|+-.++...    .+.. .       ..   + .....     .+          .  |
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            568999999999999999998887654221    1100 0       00   0 00000     00          0  1


Q ss_pred             ---HHHHHHHHHHHHHHHH----HHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           49 ---VIGFLMDIFGALLMLR----ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        49 ---~~G~~~~~~G~~l~~~----AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                         +....+..+.+.++..    .+...+..-..-.....=+++.+++..++||+++..++.|.+++..|+.+.
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence               1122334445555443    566666665666666677788999999999999999999999999998764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=92.89  E-value=0.48  Score=44.79  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=53.7

Q ss_pred             HHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccC
Q 027181           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (227)
Q Consensus        59 ~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~~~  118 (227)
                      -.....||++-.++-..-+-..+=.||+.++..+-.||++..+.+++.+.+.|++++.-.
T Consensus       173 nl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~  232 (416)
T KOG2765|consen  173 NLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG  232 (416)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence            334457899999999999999999999999999999999999999999999999888633

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=92.39  E-value=4.4  Score=31.79  Aligned_cols=55  Identities=15%  Similarity=0.230  Sum_probs=45.7

Q ss_pred             HHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 027181           60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG  114 (227)
Q Consensus        60 ~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~  114 (227)
                      ..++..+...+..-.+-+...--+++.+++..+++|+++..++.|+.++..|...
T Consensus        96 ~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   96 LSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            3445555666667777788888999999999999999999999999999998754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=91.34  E-value=1.6  Score=39.81  Aligned_cols=80  Identities=13%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchh--HHH-hhh-hHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Q 027181           37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS--VIQ-PVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (227)
Q Consensus        37 ~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~pls--vVQ-pl~-~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv  112 (227)
                      +.+.+..|+|+=+....+...=...|..-+-+.|-+  +.+ .++ -++=++..+++..++|||+++-||+++.+..+|+
T Consensus        60 ~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV  139 (293)
T COG2962          60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV  139 (293)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            455667777764444444333333444333333332  111 111 2233467888999999999999999999999998


Q ss_pred             HHhc
Q 027181          113 IGVG  116 (227)
Q Consensus       113 ~~l~  116 (227)
                      ...-
T Consensus       140 ~~~~  143 (293)
T COG2962         140 LIQT  143 (293)
T ss_pred             HHHH
Confidence            6653

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=88.77  E-value=15  Score=32.74  Aligned_cols=113  Identities=17%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCch-------------------h--HH----HHHHHhhhhhHHHH-HHHHH
Q 027181            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-------------------K--LK----VIRAYAVNKAWVIG-FLMDI   56 (227)
Q Consensus         3 ~av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-------------------~--~~----~~~~llr~~~W~~G-~~~~~   56 (227)
                      .|+.+.+++-++.+.-.+.|++--++-+....                   .  .+    ...-..+.|..+.- +....
T Consensus       154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            38889999999999999999998865332220                   0  00    01111233333322 23344


Q ss_pred             HHHHHHHHHHh---hcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 027181           57 FGALLMLRALS---QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (227)
Q Consensus        57 ~G~~l~~~AL~---~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l  115 (227)
                      .++.+|..-..   .-.-.....+....=.++.++|..+++++++..+|.|+.++..|+.+-
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence            44444443322   222233344556667889999999999999999999999999987654

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=85.35  E-value=0.86  Score=41.60  Aligned_cols=112  Identities=17%  Similarity=0.170  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHh---------h--------hhhHH-HHHHHHHHHHHHHHHH
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYA---------V--------NKAWV-IGFLMDIFGALLMLRA   65 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~ll---------r--------~~~W~-~G~~~~~~G~~l~~~A   65 (227)
                      ++++.-++ ..++...++-++.....|..-.+.+.+.+.+         +        .+.|+ .=-.+-..|..+++-|
T Consensus        39 gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya  117 (346)
T KOG4510|consen   39 GLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYA  117 (346)
T ss_pred             CceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHH
Confidence            34455555 6677777777777655553221222222111         1        11233 1122456778889999


Q ss_pred             HhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           66 LSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        66 L~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      +.+.|++=.--+.-++=+||.+++..++|||.++-|-.|......|++++.
T Consensus       118 ~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  118 LMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             HhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            999999877777788888999999999999999999999999999998886

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=80.47  E-value=5.1  Score=36.22  Aligned_cols=62  Identities=27%  Similarity=0.307  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHhhhhHHHHHHHHHHHHHhccccchhHHH----HHHHHHHHHH
Q 027181           52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTI  113 (227)
Q Consensus        52 ~~~~~~G~~l~~~AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~~~ew~----gv~l~~~Gv~  113 (227)
                      -.+..+|-.+.+.+-...=+..-.++.+.+++++.+-+.+++||+=+++|+.    |+.++++|.+
T Consensus       202 G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  202 GLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            3356677777888888888999999999999999999999999999999986    4444555543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.05
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.84

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.05  E-value=3.8e-09  Score=81.17  Aligned_cols=99  Identities=17%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhh-hhHHH
Q 027181            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL   82 (227)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl-~~~~l   82 (227)
                      +.++-+++.++...++...|++..              .-+.+++..+..+..+++.+...|+...|++.+.|+ ...+.
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s~~--------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~   68 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFSEG--------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI   68 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC--------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence            445667888999999999998731              112356678888999999999999999999999999 79999


Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        83 ~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      +++.+++.+++||+++..+|.|+.+++.|++++.
T Consensus        69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998885

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.84  E-value=8.2e-09  Score=82.62  Aligned_cols=98  Identities=17%  Similarity=0.220  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhh-hhHHHH
Q 027181            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLA   83 (227)
Q Consensus         5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl-~~~~l~   83 (227)
                      .++-+++.++...++.+.|++..              ..+.+++..+..+..+++.+...++...|++.+.|+ ...+.+
T Consensus         4 ~l~Ll~ail~ev~~~~~lK~s~g--------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv   69 (137)
T 2i68_A            4 YIYLGGAILAEVIGTTLMKFSEG--------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence            35566788889999999998631              112355678999999999999999999999999999 899999


Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (227)
Q Consensus        84 ~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~  116 (227)
                      ++.+++.+++||+++..+|+|+.+++.|++++.
T Consensus        70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (137)
T ss_dssp             HHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998885

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00