Citrus Sinensis ID: 027209


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
MVKMVHQNLMLAIVITEHPCAFISFWRLNFQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNILFGEEPVVKTSKKIHNQKFAELTGNDIFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKPPGGESSISLV
cHHHHHHHEEEEEEEcccccccccccccEEEEcccccEEEEEcccccccccccccHHHHHHHHHHcccccccccHHHHHHcccccHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHEEEcccccHHEHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHcHHHHccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEccccccccEEccccccEccccHccccHHHHcccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccEEEEc
MVKMVHQNLMLAIVITEHPCAFISFWRLNFQQAMNGisqisfsaeetvspkkptsvpevakqrelsgslqsesdlktkkQISDakfkeisghdifspapeiqprSLAAARSLeskeskdmgepaprnvrtsvkvsnpaggqsnilfgeepvvktsKKIHNQKfaeltgndifkgdvppgsaekplsnaklremsgsnifadekvesrdyfggvrkppggessislv
MVKMVHQNLMLAIVITEHPCAFISFWRLNFQQAMNGISQISfsaeetvspkkptsvpevakqrelsgslqsesdlktkKQISDAKFkeisghdifspapeiqpRSLAAARSLESkeskdmgepaprnvrtsvkvsnpaggqsnilfgeepvvktSKKIHNQkfaeltgndifkgdvppgSAEKplsnaklremsgsnifadekvesrdyfggvrkppggessislv
MVKMVHQNLMLAIVITEHPCAFISFWRLNFQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNILFGEEPVVKTSKKIHNQKFAELTGNDIFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKPPGGESSISLV
****VHQNLMLAIVITEHPCAFISFWRLNFQQAMNGISQI******************************************************************************************************************************************************************************************
*******NLMLAIVITEHPCAFISFW*L*FQQAMNGI***************************************************ISGHDIFS********************************************************************ELTGNDIF*************************IFADE********************ISLV
MVKMVHQNLMLAIVITEHPCAFISFWRLNFQQAMNGISQISFS*************************************ISDAKFKEISGHDIFSPAPEIQP************************VRTSVKVSNPAGGQSNILFGEEPVVKTSKKIHNQKFAELTGNDIFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKP**********
MVKMVHQNLMLAIVITEHPCAFISFWRLNFQQAMNGISQISFSAE*******PTSVP*V*****************************ISGHDIFSPAPEIQPRSLAAARSL*******************VKV*******SNILFGEEPVVKTSKKIHNQKFAELTG*DIFK**************************************GVRK****ESSI***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVKMVHQNLMLAIVITEHPCAFISFWRLNFQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNILFGEEPVVKTSKKIHNQKFAELTGNDIFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKPPGGESSISLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query226
255580868300 conserved hypothetical protein [Ricinus 0.867 0.653 0.852 2e-92
147856521 342 hypothetical protein VITISV_030871 [Viti 0.871 0.576 0.857 1e-91
449451437299 PREDICTED: uncharacterized protein LOC10 0.871 0.658 0.807 5e-89
356567722303 PREDICTED: uncharacterized protein LOC10 0.867 0.646 0.806 5e-86
356540285301 PREDICTED: uncharacterized protein LOC10 0.867 0.651 0.801 5e-85
356540287305 PREDICTED: uncharacterized protein LOC10 0.867 0.642 0.801 9e-85
224083697300 predicted protein [Populus trichocarpa] 0.871 0.656 0.781 2e-84
224096181300 predicted protein [Populus trichocarpa] 0.871 0.656 0.796 7e-82
15236057299 uncharacterized protein [Arabidopsis tha 0.867 0.655 0.781 8e-82
30692553298 uncharacterized protein [Arabidopsis tha 0.876 0.664 0.773 1e-81
>gi|255580868|ref|XP_002531253.1| conserved hypothetical protein [Ricinus communis] gi|223529138|gb|EEF31117.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 167/196 (85%), Positives = 186/196 (94%)

Query: 31  QQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEIS 90
           QQAMNGISQISFS EE++SPKKPTS+PEVAKQRELSG+LQSE+DLK KKQIS+AKFKEIS
Sbjct: 105 QQAMNGISQISFSTEESISPKKPTSLPEVAKQRELSGTLQSEADLKNKKQISNAKFKEIS 164

Query: 91  GHDIFSPAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNILFGEEP 150
           GHDIF+P+P+I  RSLAAAR+LESKE+KDM +PAPRN+RTSVKVSNPAGGQSNILFGE+P
Sbjct: 165 GHDIFAPSPDISTRSLAAARTLESKENKDMEKPAPRNIRTSVKVSNPAGGQSNILFGEDP 224

Query: 151 VVKTSKKIHNQKFAELTGNDIFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYF 210
           V +T+KKIHNQKF ELTGNDIFKGDVPPGSAEKPLSNAKL+E+SGSNIFAD K ESRDYF
Sbjct: 225 VTRTAKKIHNQKFQELTGNDIFKGDVPPGSAEKPLSNAKLKEISGSNIFADGKSESRDYF 284

Query: 211 GGVRKPPGGESSISLV 226
            GVRKPPGGESSI+LV
Sbjct: 285 RGVRKPPGGESSIALV 300




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856521|emb|CAN82836.1| hypothetical protein VITISV_030871 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449451437|ref|XP_004143468.1| PREDICTED: uncharacterized protein LOC101209377 [Cucumis sativus] gi|449504822|ref|XP_004162304.1| PREDICTED: uncharacterized protein LOC101230134 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567722|ref|XP_003552066.1| PREDICTED: uncharacterized protein LOC100804656 [Glycine max] Back     alignment and taxonomy information
>gi|356540285|ref|XP_003538620.1| PREDICTED: uncharacterized protein LOC100789861 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356540287|ref|XP_003538621.1| PREDICTED: uncharacterized protein LOC100789861 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224083697|ref|XP_002307088.1| predicted protein [Populus trichocarpa] gi|222856537|gb|EEE94084.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224096181|ref|XP_002310565.1| predicted protein [Populus trichocarpa] gi|118485862|gb|ABK94778.1| unknown [Populus trichocarpa] gi|222853468|gb|EEE91015.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15236057|ref|NP_195696.1| uncharacterized protein [Arabidopsis thaliana] gi|4490737|emb|CAB38899.1| putative protein [Arabidopsis thaliana] gi|7271041|emb|CAB80649.1| putative protein [Arabidopsis thaliana] gi|332661729|gb|AEE87129.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30692553|ref|NP_849528.1| uncharacterized protein [Arabidopsis thaliana] gi|17380782|gb|AAL36221.1| unknown protein [Arabidopsis thaliana] gi|21436383|gb|AAM51361.1| unknown protein [Arabidopsis thaliana] gi|332661730|gb|AEE87130.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query226
TAIR|locus:2140000299 AT4G39860 "AT4G39860" [Arabido 0.867 0.655 0.781 2.7e-77
TAIR|locus:2060425328 AT2G22270 "AT2G22270" [Arabido 0.862 0.594 0.590 4e-51
TAIR|locus:2011375286 AT1G35780 "AT1G35780" [Arabido 0.623 0.493 0.444 4.2e-24
TAIR|locus:2140000 AT4G39860 "AT4G39860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 154/197 (78%), Positives = 175/197 (88%)

Query:    30 FQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEI 89
             +QQ +NG+SQISFSA+  VSPKKPT++ EVAKQRELSG+L +E+DLK+ KQIS AK +EI
Sbjct:   104 YQQTLNGMSQISFSADGNVSPKKPTTLTEVAKQRELSGNLLTEADLKSNKQISSAKIEEI 163

Query:    90 SGHDIFSPAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNILFGEE 149
             SGHDIF+P  EIQPRSL AA+  E++ ++DMGEPAPRN+RTSVKVSNPAGGQSNILF EE
Sbjct:   164 SGHDIFAPPSEIQPRSLVAAQQ-EARGNRDMGEPAPRNLRTSVKVSNPAGGQSNILFSEE 222

Query:   150 PVVKTSKKIHNQKFAELTGNDIFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDY 209
             PVVKTSKKIHNQKF ELTGN IFKGD  PGSA+K LS+AKLREMSG+NIFAD K ESRDY
Sbjct:   223 PVVKTSKKIHNQKFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIFADGKSESRDY 282

Query:   210 FGGVRKPPGGESSISLV 226
             FGGVRKPPGGESSISLV
Sbjct:   283 FGGVRKPPGGESSISLV 299




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0005737 "cytoplasm" evidence=IDA
GO:0000280 "nuclear division" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0007000 "nucleolus organization" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2060425 AT2G22270 "AT2G22270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011375 AT1G35780 "AT1G35780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00012867001
SubName- Full=Chromosome undetermined scaffold_408, whole genome shotgun sequence; (306 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
pfam13266297 pfam13266, DUF4057, Protein of unknown function (D 1e-114
pfam13266 297 pfam13266, DUF4057, Protein of unknown function (D 2e-04
>gnl|CDD|222016 pfam13266, DUF4057, Protein of unknown function (DUF4057) Back     alignment and domain information
 Score =  328 bits (842), Expect = e-114
 Identities = 157/193 (81%), Positives = 171/193 (88%), Gaps = 1/193 (0%)

Query: 32  QAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISG 91
           QA  GISQISFS EE+VSPKKPTSVPEVAKQRELSG+L+SE+D K KKQIS+AK KE+SG
Sbjct: 106 QAQAGISQISFSEEESVSPKKPTSVPEVAKQRELSGTLESEADSKMKKQISNAKSKELSG 165

Query: 92  HDIFSPAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNILFGEEPV 151
           HDIF+P PEI+PRSLAA   LE KE+KD GEPAPRN RTSVKVSNPAGGQSNI F E+ V
Sbjct: 166 HDIFAPPPEIKPRSLAARL-LELKENKDRGEPAPRNARTSVKVSNPAGGQSNIEFSEDSV 224

Query: 152 VKTSKKIHNQKFAELTGNDIFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFG 211
           VKT+KKIHNQKF ELTGN+IFKGDVPP SAEKPLS AKL+EMSGSNIFAD K ESRDY G
Sbjct: 225 VKTAKKIHNQKFTELTGNNIFKGDVPPASAEKPLSTAKLKEMSGSNIFADGKAESRDYLG 284

Query: 212 GVRKPPGGESSIS 224
           GVRKPPGGESSI+
Sbjct: 285 GVRKPPGGESSIA 297


This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 279 and 322 amino acids in length. Length = 297

>gnl|CDD|222016 pfam13266, DUF4057, Protein of unknown function (DUF4057) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 226
PF13266302 DUF4057: Protein of unknown function (DUF4057) 100.0
PF13266 302 DUF4057: Protein of unknown function (DUF4057) 100.0
>PF13266 DUF4057: Protein of unknown function (DUF4057) Back     alignment and domain information
Probab=100.00  E-value=1.4e-83  Score=578.11  Aligned_cols=199  Identities=81%  Similarity=1.136  Sum_probs=196.4

Q ss_pred             cccccccccCCCcceeeecCCCcCCCCCCCChhHhhhhhhhccccCCccccccccccchhhhhhhhcCccCCCCCCCCcc
Q 027209           25 FWRLNFQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPR  104 (226)
Q Consensus        25 ~~~r~~qq~~~g~SqIsFg~e~~~spkKp~s~~EvAKqrELsGt~~~~~~~~~~K~~S~aK~KEmsGs~IFa~p~e~~pr  104 (226)
                      -++|||||+++|+|||||++||+++||||||++|||||||||||+++++|.+.+||+|+||+|||+|||||++|+++.||
T Consensus       104 t~vr~yQq~~~giSqISF~~eesvsPKKpts~~EVAKQRELSGTlese~D~k~kkq~S~AK~KELSGhdIFapp~~~~pr  183 (302)
T PF13266_consen  104 TGVRMYQQAINGISQISFSEEESVSPKKPTSLPEVAKQRELSGTLESEADSKMKKQISNAKSKELSGHDIFAPPPEIKPR  183 (302)
T ss_pred             cccceecccccccceeeecCCCCcCCCCccchHHHHHHhhhcCccccchhhHHHhhhhhhhhhhcccCcccCCCccCCCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhhhhhhhcccCCCCCCCCCccceeeeecCCCCCcceecCCCCccccccccchhhhhhhcCCcccCCCCCCCCCCCC
Q 027209          105 SLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNILFGEEPVVKTSKKIHNQKFAELTGNDIFKGDVPPGSAEKP  184 (226)
Q Consensus       105 ~~~~a~~~~~k~~~~~~~~~p~n~~t~~~v~~~~~g~S~IsFsee~~vkt~Kkis~~K~aELSGndIFk~D~~p~~aeK~  184 (226)
                      .++ +|.||+|||++++||+|+|.+|++++.++++|+|+|.|++|+++||+||||++||+||+|||||++|.++.++||+
T Consensus       184 ~~~-~r~le~k~~~~~~e~~~~~~~ts~~~~n~a~~~s~~~~~~~~~~Ktakki~~~K~aeltGN~IFk~d~p~~saek~  262 (302)
T PF13266_consen  184 SLT-ARSLELKENKDRGEPAPRNVRTSVKVSNPAGGQSNIEFGEDSVVKTAKKISNQKFAELTGNNIFKGDVPPASAEKP  262 (302)
T ss_pred             cch-hhhhhhcccccccCCCCCcccccccccCCcCcccccccccCcchhhhhhhhhhhhhhcccCcccCCCCCCCCcccc
Confidence            994 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhccCCCCCCCCCcccccccCCCcccCCCCCCCcc
Q 027209          185 LSNAKLREMSGSNIFADEKVESRDYFGGVRKPPGGESSIS  224 (226)
Q Consensus       185 lS~AKlkEmSGsDIFADgK~~~Rd~~ggvrkPPGGeSSIa  224 (226)
                      ||.||||||+|+|||||||+++|||+|||||||||+||||
T Consensus       263 lS~AKlrEmsGsdIFaDgk~~~rd~~gg~rkPPGG~SSIa  302 (302)
T PF13266_consen  263 LSSAKLREMSGSDIFADGKAESRDYLGGVRKPPGGESSIA  302 (302)
T ss_pred             hhhhhHhhcccccccccCCcccchhcCCccCCCCCCCcCC
Confidence            9999999999999999999999999999999999999997



>PF13266 DUF4057: Protein of unknown function (DUF4057) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00