Citrus Sinensis ID: 027210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MAEQQAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccEEEEEEEEEEEEEccccccccEEEEEEEEEEccccEEEEEEcEEEEEEEEccEEEEEccccccEEccccEEEEEEEEEEEEEEccHHHHHHHHcccccEEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEccccccccccccEEccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEcccccccEEEEEEEEEEEcccccEEEEEEEEEEEEEEccEEEEEcccccccccccccEEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
maeqqaplngayygpavppptkhyhrpgrgggcggccCLFTLLIKIIVSAVLILGLAALIVWLIFrpinkvkfhvtdasltefnltsnnnlnYKLALNItirnpnkkigvhydRIEARvyyddkrltsvpltpfyqghkntsylnpvfegQQILLGGalrdynkennagvfsIDVKLKLKVRFklgkiktpkfkptiecdlkvplnssngrfagrrfettkcdvdf
Flexible Loop (DISEMBL)
maeqqaplngayygpavPPPTKHYHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALnitirnpnkkigvhydRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNagvfsidvklkLKVRfklgkiktpkfkptiecdlkvplnssngrfagrrfettkcdvdf
Low Complexity Region (SEG)
MAEQQAPLNGAYYGPAVPPPTKHYHRPgrgggcggcccLFTLLIKiivsavlilglaalivwliFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF
Disordered region (IsUnstruct)
***********************YHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPL*********************
Disordered Region (DISOPRED)
***********************************CCCLFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLT**********YLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPL*************TTKCDVDF
Disordered Region (DISEMBL)
MAEQQAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF
Disordered Region (DISPRO)
*******L***YYGPAVPPPT**********GCGGCCCLFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDV**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEQQAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q9C615	416	Putative syntaxin-24 OS=A	no	no	0.628	0.341	0.479	5e-31
O48915	219	Protein NDR1 OS=Arabidops	no	no	0.681	0.703	0.262	3e-05
Q8VZ13	221	Uncharacterized protein A	no	no	0.548	0.561	0.244	0.0001

>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1

 Score =  134 bits (337), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 91/146 (62%), Gaps = 4/146 (2%)

Query: 69  NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTS 128
           N VKF V DA LT F+L SNNNL Y L+LN++IRN    IG+HYDR EA VYY ++RL +
Sbjct: 5   NDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGA 64

Query: 129 VPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKLKLKVRFKLG 186
           VP+  FY G KNT  L  +FEGQ ++L  G   + +  +   GV+ IDVKL +  R  + 
Sbjct: 65  VPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVL 124

Query: 187 KIKTPKFKPTIECDLKVP--LNSSNG 210
            + T   KP + C LK+P  L SSN 
Sbjct: 125 HLVTWPMKPVVRCHLKIPLALGSSNS 150

Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 33/187 (17%)

Query: 30  GGGCGGCCCLFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTSNN 89
           G  C  CC          +S +   GL +L +WL  R  +K K  + +  +       N+
Sbjct: 11  GRNCCTCC----------LSFIFTAGLTSLFLWLSLRA-DKPKCSIQNFFIPALGKDPNS 59

Query: 90  NLNYKLALNITIRNPNKKIGVHYDRIEARVY-YDDKRLTSVPLT--------PFYQGHKN 140
             N  L   +   NPNK  G++YD +       +  ++ S  L          FYQGHK 
Sbjct: 60  RDNTTLNFMVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKK 119

Query: 141 TS----YLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPT 196
            +     + P+    Q +L   L      N + VF +D  LK +VRFK+   KT ++   
Sbjct: 120 KAKKWGQVKPL--NNQTVLRAVL-----PNGSAVFRLD--LKTQVRFKIVFWKTKRYGVE 170

Query: 197 IECDLKV 203
           +  D++V
Sbjct: 171 VGADVEV 177

Involved in disease resistance. Required for resistance conferred by multiple R genes recognizing different bacterial and oomycete pathogen isolates like avirulent P.syringae or H.parasitica (downy mildew). Required for the establishment of hypersensitive response (HR) and systemic acquired resistance (SAR) after infection with the bacterial pathogen P.syringae DC3000 carrying avrRpt2. Required for resistance to the soilborne fungus V.longisporum. Interaction with RIN4 is required for the activation of the R gene RPS2 and RPS2-mediated resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 3/127 (2%)

Query: 60  IVWLIFRPINKVKFHVTDASLTEFNLTSNNN-LNYKLALNITIRNPNKKIGVHYDRIEAR 118
           I +L  RP  ++ + V  AS+ EF + +N++ +N K +  I   NP K + V Y  +   
Sbjct: 57  ITYLTLRP-KRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRIS 115

Query: 119 VYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGG-ALRDYNKENNAGVFSIDVKL 177
             + ++ +    ++PF Q  KN + +        + L     RD   E + G   ++V +
Sbjct: 116 TAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTIEMEVYI 175

Query: 178 KLKVRFK 184
             +V +K
Sbjct: 176 TARVSYK 182

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
167427545	225	hairpin-inducing protein [Casuarina glau	0.982	0.986	0.572	6e-70
47971182	229	harpin inducing protein 1-like 9 [Nicoti	0.982	0.969	0.557	4e-67
224088398	201	predicted protein [Populus trichocarpa]	0.876	0.985	0.607	7e-67
224138362	207	predicted protein [Populus trichocarpa]	0.898	0.980	0.595	2e-66
7417006	229	harpin inducing protein [Nicotiana tabac	0.973	0.960	0.563	2e-66
255583568	219	syntaxin, plant, putative [Ricinus commu	0.960	0.990	0.614	2e-66
47971184	229	harpin inducing protein 1-like 18 [Nicot	0.973	0.960	0.558	4e-66
42557351	228	hin1 like protein [Capsicum chinense]	0.969	0.960	0.554	6e-65
24429927	225	hin1-like protein [Solanum tuberosum]	0.951	0.955	0.548	6e-63
449437456	221	PREDICTED: putative syntaxin-24-like [Cu	0.969	0.990	0.557	3e-62

>gi|167427545|gb|ABZ80409.1| hairpin-inducing protein [Casuarina glauca]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 171/229 (74%), Gaps = 7/229 (3%)

Query: 1   MAEQQAPLNGAYYGPAVPPPTKHYHRP-GRGGGCGGCCCLFTLLIKIIVSAVLILGLAAL 59
           MAE+Q  LNGAYYGPAVPPP + YHRP   GG   GC C F  L+K+IVS ++ILGLAAL
Sbjct: 1   MAEKQTNLNGAYYGPAVPPPPQSYHRPGRSGGRGCGCACFFCFLLKLIVSVIVILGLAAL 60

Query: 60  IVWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARV 119
           I WLIFRP + + FHVTDA+LT+F+ + NN L Y LALN+++RN N+KIGV+YD IEAR 
Sbjct: 61  IFWLIFRPTS-INFHVTDATLTQFDFSDNNTLQYNLALNVSVRNSNRKIGVYYDTIEARA 119

Query: 120 YYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKL 177
           YY+D+R  +  LTPFYQGHK TS LNP F GQQ++L     L  +N E  +GV+SIDVK 
Sbjct: 120 YYEDQRFATDSLTPFYQGHKTTSTLNPEFAGQQLVLLETDQLSQFNSEKTSGVYSIDVKF 179

Query: 178 KLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
            L++RFK+GK++  KFKP ++C+LKVP++S     +   F+TTKC++D+
Sbjct: 180 YLRIRFKVGKVRVGKFKPQVKCELKVPMSSGT---SSESFQTTKCELDY 225

Source: Casuarina glauca

Species: Casuarina glauca

Genus: Casuarina

Family: Casuarinaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47971182|dbj|BAD22533.1| harpin inducing protein 1-like 9 [Nicotiana tabacum]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 130/233 (55%), Positives = 168/233 (72%), Gaps = 11/233 (4%)

Query: 1   MAEQQAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLL----IKIIVSAVLILGL 56
           MAE    LNGAYYGP++PP +K YH  GRG  C  C CLF  L     +I  + ++I+G+
Sbjct: 1   MAESH--LNGAYYGPSIPPSSKTYHHHGRGSSCNPCSCLFGCLCNCIFQIFFTILVIIGV 58

Query: 57  AALIVWLIFRPINKVKFHVTDASLTEFNL-TSNNNLNYKLALNITIRNPNKKIGVHYDRI 115
           AAL++WL+ RP NKVKF+VTDA+LT+F+L T+NN +NY LALN+TIRNPNK+IG++YD I
Sbjct: 59  AALVLWLVLRP-NKVKFYVTDATLTQFDLSTTNNTINYDLALNMTIRNPNKRIGIYYDSI 117

Query: 116 EARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALR--DYNKENNAGVFSI 173
           EAR  Y  +R  S  L PFYQGHKNTS L+PVF+GQ ++L G     +YN E NAGV+ +
Sbjct: 118 EARAMYQGERFASQNLEPFYQGHKNTSSLHPVFKGQSLVLLGDREKTNYNNEKNAGVYEM 177

Query: 174 DVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
           +VKL +++R K G IKT K KP IECD KVPL  SNGR +   FE T+C +D+
Sbjct: 178 EVKLSMRIRLKFGWIKTRKIKPKIECDFKVPL-ESNGRSSSANFEETRCHLDW 229

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088398|ref|XP_002308441.1| predicted protein [Populus trichocarpa] gi|222854417|gb|EEE91964.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 159/204 (77%), Gaps = 6/204 (2%)

Query: 8   LNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALIVWLIFRP 67
           LNGA YGP++PPP +HYHRPGRG    GCCC    L+K+I++  +++GL  LI+WLIFRP
Sbjct: 1   LNGASYGPSIPPP-QHYHRPGRGSD-RGCCCFLAFLLKVIITVAMLIGLFILIIWLIFRP 58

Query: 68  INKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLT 127
           INKV+FHVTD +LT+FN T NN L + LA NI+IRNPNKKIG++YDRIEAR +Y+D+R  
Sbjct: 59  INKVEFHVTDVALTQFNYT-NNMLQFNLAANISIRNPNKKIGIYYDRIEARAFYEDQRFG 117

Query: 128 SVPLTPFYQGHKNTSYLNPVFEGQQ--ILLGGALRDYNKENNAGVFSIDVKLKLKVRFKL 185
              LTPFYQGHKNTS LN VF+GQQ   L G  L  +N+E  +G++SI ++L L++RFKL
Sbjct: 118 YHALTPFYQGHKNTSVLNVVFKGQQAVTLQGEELTRFNQERTSGLYSIALELSLRIRFKL 177

Query: 186 GKIKTPKFKPTIEC-DLKVPLNSS 208
           GK+KT +FKP +EC DLK+PLN S
Sbjct: 178 GKVKTARFKPKVECDDLKIPLNGS 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138362|ref|XP_002322795.1| predicted protein [Populus trichocarpa] gi|222867425|gb|EEF04556.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 163/210 (77%), Gaps = 7/210 (3%)

Query: 1   MAEQQAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALI 60
           MA++Q  LNGAYYGP +PP T+ YHRPGRG  CG CCCL TLL+K+I++ + ++GL  LI
Sbjct: 1   MADKQG-LNGAYYGPKIPP-TQQYHRPGRGSDCG-CCCLVTLLLKVIITVLTLIGLFVLI 57

Query: 61  VWLIFRPINKVKFHVTDASLTEFNLTSNNN-LNYKLALNITIRNPNKKIGVHYDRIEARV 119
           VWLIFRPINKVKFHVTD +LTEFN ++NN  L Y LA N++IRNPNKKIG++Y+R+EA+ 
Sbjct: 58  VWLIFRPINKVKFHVTDVALTEFNYSTNNTMLRYNLAFNVSIRNPNKKIGIYYNRVEAKA 117

Query: 120 YYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQ--ILLGGALRDYNKENNAGVFSIDVKL 177
           +Y+ +R     LTPFYQGHKNT+ LN VF G Q   L G  L+ +N E  +G++SI ++L
Sbjct: 118 FYEGQRFGYSSLTPFYQGHKNTTVLNVVFTGTQPVTLQGEDLKQFNSEKTSGLYSIALEL 177

Query: 178 KLKVRFKLGKIKTPKFKPTIEC-DLKVPLN 206
            L+V+FKLGK+KT +FKP +EC DLK+ LN
Sbjct: 178 SLRVKFKLGKVKTARFKPKVECDDLKIRLN 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7417006|gb|AAF62403.1|AF212183_1 harpin inducing protein [Nicotiana tabacum] gi|22830759|dbj|BAC15623.1| hin1 [Nicotiana tabacum]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/229 (56%), Positives = 166/229 (72%), Gaps = 9/229 (3%)

Query: 5   QAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLL----IKIIVSAVLILGLAALI 60
           ++ LNGAYYGP++PPP K YHR GRG  C  C CLF  L     KII + ++ILG+ AL+
Sbjct: 3   ESNLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNCFFKIIFTLLIILGVIALV 62

Query: 61  VWLIFRPINKVKFHVTDASLTEFNL-TSNNNLNYKLALNITIRNPNKKIGVHYDRIEARV 119
           +WL+ RP NKVKF+VTDA+LT+F+L T+NN + Y LALN+TIRNPNK+IG++YD IEAR 
Sbjct: 63  LWLVLRP-NKVKFYVTDATLTQFDLSTTNNTIFYDLALNMTIRNPNKRIGIYYDSIEARA 121

Query: 120 YYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALR--DYNKENNAGVFSIDVKL 177
            Y  +R  S  L PFYQGHKNTS L PVF+GQ ++L G     +YN E N GV+ ++VKL
Sbjct: 122 LYQGERFDSTNLEPFYQGHKNTSSLRPVFKGQSLVLLGDREKSNYNNEKNLGVYEMEVKL 181

Query: 178 KLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
            +++R K+G IKT K KP IECD KVPL  SNGR +   FE T+C +D+
Sbjct: 182 YMRIRLKVGWIKTHKIKPKIECDFKVPL-GSNGRSSSANFEETRCHLDW 229

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583568|ref|XP_002532540.1| syntaxin, plant, putative [Ricinus communis] gi|223527729|gb|EEF29834.1| syntaxin, plant, putative [Ricinus communis]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/228 (61%), Positives = 176/228 (77%), Gaps = 11/228 (4%)

Query: 1   MAEQQAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALI 60
           MAE+QA LNGAYYGPA+PPP + YHRPGR G   GCC L + L+KII++  ++LGLA LI
Sbjct: 1   MAEKQAQLNGAYYGPAIPPP-QSYHRPGRSGCGCGCCLL-SCLLKIIITIAVVLGLAVLI 58

Query: 61  VWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVY 120
            WL+ RP NKVKFHVT+A+L+EFN+ +NN L+Y LALNIT+RNPNKKIG++YDRIEAR  
Sbjct: 59  FWLVVRP-NKVKFHVTEANLSEFNI-NNNTLHYNLALNITVRNPNKKIGIYYDRIEARGK 116

Query: 121 YDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKLK 178
           Y+D+R  S  LTPFYQGHKNTS L P F+GQQ++L  G  L D+N+E  +GV+SIDV L 
Sbjct: 117 YEDQRFGSQFLTPFYQGHKNTSILTPAFQGQQLMLLSGDELTDFNEERVSGVYSIDVTLY 176

Query: 179 LKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
           LK+RFK+G +K  KFKP I+C+LKVP NSS        F+ T+CD D+
Sbjct: 177 LKIRFKIGDLKIGKFKPKIQCELKVPSNSS-----AVPFQRTECDWDY 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47971184|dbj|BAD22534.1| harpin inducing protein 1-like 18 [Nicotiana tabacum]

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/229 (55%), Positives = 166/229 (72%), Gaps = 9/229 (3%)

Query: 5   QAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLL----IKIIVSAVLILGLAALI 60
           ++ LNGAYYGP++PPP K YHR GRG  C  C CLF  L     KII + ++ILG+ AL+
Sbjct: 3   ESNLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNCFFKIIFTLLIILGVIALV 62

Query: 61  VWLIFRPINKVKFHVTDASLTEFNLT-SNNNLNYKLALNITIRNPNKKIGVHYDRIEARV 119
           +WL+ RP NKVKF+VTDA+LT+F+L+ +NN + Y LALN+TIRNPNK+IG++YD IEAR 
Sbjct: 63  LWLVLRP-NKVKFYVTDATLTQFDLSNTNNTIFYDLALNMTIRNPNKRIGIYYDSIEARA 121

Query: 120 YYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALR--DYNKENNAGVFSIDVKL 177
            Y  +R  S  L PFYQGHKNTS L+PVF+GQ ++L G     +YN E N GV+ ++VKL
Sbjct: 122 MYQGERFHSTNLKPFYQGHKNTSSLHPVFKGQSLVLLGDREKSNYNNEKNLGVYEMEVKL 181

Query: 178 KLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
            +++R K G IKT K KP IECD KVPL  SNGR +   FE T+C +D+
Sbjct: 182 YMRIRLKAGWIKTHKIKPKIECDFKVPL-ESNGRSSSANFEETRCHLDW 229

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42557351|dbj|BAD11071.1| hin1 like protein [Capsicum chinense]

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 127/229 (55%), Positives = 169/229 (73%), Gaps = 10/229 (4%)

Query: 5   QAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLL----IKIIVSAVLILGLAALI 60
           ++ LNGAYYGP++PPP+K YHR GRG  C  C CLF  L     +II + +++LG+ AL+
Sbjct: 3   ESNLNGAYYGPSIPPPSKSYHRHGRGSSCNPCSCLFGCLCNCIFQIIFTILIVLGVIALV 62

Query: 61  VWLIFRPINKVKFHVTDASLTEFNL-TSNNNLNYKLALNITIRNPNKKIGVHYDRIEARV 119
           +WL+ RP NKVKF+VTDA+LT+F+L T+NN L Y LALN+TIRNPNK+IG++YD IEAR 
Sbjct: 63  LWLVLRP-NKVKFYVTDATLTQFDLSTANNTLYYDLALNMTIRNPNKRIGIYYDSIEARG 121

Query: 120 YYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALR--DYNKENNAGVFSIDVKL 177
            Y  +R  S  L PFYQGHKNTS L+PV +GQ ++L G     +YN E N+GV+ I++KL
Sbjct: 122 MYKGERFASQNLEPFYQGHKNTSSLHPVLKGQSLVLLGDREKSNYNNEKNSGVYDIEMKL 181

Query: 178 KLKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
            +++R K+G IKT K KP IECD+KVPL  SNGR +   FE T+C +D+
Sbjct: 182 YMRIRLKIGWIKTHKIKPKIECDIKVPL-ESNGR-SSANFEETRCHLDW 228

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24429927|gb|AAN52931.1| hin1-like protein [Solanum tuberosum]

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 163/226 (72%), Gaps = 11/226 (4%)

Query: 8   LNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLL----IKIIVSAVLILGLAALIVWL 63
           LNGAYYGP++PPP+K YHR GRG  C  C CLF  L     +II + +++LG+ AL++WL
Sbjct: 4   LNGAYYGPSIPPPSKSYHRHGRGSSCNPCSCLFGCLCNCIFQIIFTILIVLGVIALVLWL 63

Query: 64  IFRPINKVKFHVTDASLTEFNL-TSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYD 122
           + RP NKV F+VTDA+LT+F+  T+NN L Y LALN+TIRNPNK+IG++YD IEAR  Y 
Sbjct: 64  VLRP-NKVNFYVTDATLTQFDYSTTNNTLYYDLALNMTIRNPNKRIGIYYDSIEARGMYQ 122

Query: 123 DKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILLGGALR--DYNKENNAGVFSIDVKLKLK 180
            +R  S  L  FYQGHKNTSYL+PVF+GQ ++L G     +YN E N G++ +++KL ++
Sbjct: 123 GQRFASQNLERFYQGHKNTSYLHPVFKGQNLVLLGDREKTNYNNEKNLGIYEMEMKLYMR 182

Query: 181 VRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
           +R K+G IKT K KP IECD KVPL SS GR     FE T+C +D+
Sbjct: 183 IRLKIGWIKTHKIKPRIECDFKVPLESS-GRSVN--FEETRCHLDW 225

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437456|ref|XP_004136508.1| PREDICTED: putative syntaxin-24-like [Cucumis sativus] gi|449522059|ref|XP_004168045.1| PREDICTED: putative syntaxin-24-like [Cucumis sativus]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/228 (55%), Positives = 168/228 (73%), Gaps = 9/228 (3%)

Query: 1   MAEQQAPLNGAYYGPAVPPPTKHYHRPGRGGGCGGCCCLFTLLIKIIVSAVLILGLAALI 60
           MA++Q  LNGA+YGPAVPPP K YHR G G GC   CCL T  +K +++ V++LG+A L+
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCA--CCLLTTFLKFLIAIVVVLGVAVLV 58

Query: 61  VWLIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVY 120
            WL+FRP NK+KF VT A LT FN+ S N L+Y LALN+T+RNPNK+IGV+YD IEA  Y
Sbjct: 59  FWLVFRP-NKLKFDVTGAQLTRFNV-SGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPY 116

Query: 121 YDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKLK 178
           Y D+RL +  LTPFYQGHK TS L+P F+GQQI++  G  L ++N E  AGVF +DVK++
Sbjct: 117 YKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIR 176

Query: 179 LKVRFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
           L++R K+G ++  KF+P + C+LKVPL S+   F    F+TT+CD DF
Sbjct: 177 LRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSFT---FQTTRCDFDF 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2164305	231	NHL3 "AT5G06320" [Arabidopsis	0.703	0.688	0.557	3.7e-50
TAIR|locus:2039185	227	YLS9 "AT2G35980" [Arabidopsis	0.982	0.977	0.458	6.7e-49
TAIR|locus:2098363	240	NHL2 "AT3G11650" [Arabidopsis	0.703	0.662	0.487	1.2e-43
TAIR|locus:2062410	238	AT2G35460 "AT2G35460" [Arabido	0.690	0.655	0.478	2e-41
TAIR|locus:2028336	416	ATSYP24 [Arabidopsis thaliana	0.623	0.338	0.482	6.9e-31
TAIR|locus:2125157	227	AT4G01410 "AT4G01410" [Arabido	0.703	0.700	0.312	3.7e-16
TAIR|locus:2098368	209	NHL1 "AT3G11660" [Arabidopsis	0.681	0.736	0.299	9.8e-16
TAIR|locus:2164315	207	AT5G06330 "AT5G06330" [Arabido	0.690	0.753	0.285	4.2e-15
TAIR|locus:2020163	239	AT1G54540 "AT1G54540" [Arabido	0.606	0.573	0.304	1.1e-14
TAIR|locus:2172681	207	AT5G22870 "AT5G22870" [Arabido	0.663	0.724	0.272	3e-14

TAIR|locus:2164305 NHL3 "AT5G06320" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 92/165 (55%), Positives = 118/165 (71%)

Query:    65 FRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDK 124
             FRP N +KFHVTDA LTEF L   NNL Y L LN TIRNPN++IGV+YD IE R YY D+
Sbjct:    70 FRP-NAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQ 128

Query:   125 RL-TSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKLKLKV 181
             R   S  ++ FYQGHKNT+ +     GQQ++L  GG  +D N++ N+ ++ ID KL+LK+
Sbjct:   129 RFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKI 188

Query:   182 RFKLGKIKTPKFKPTIECDLKVPLNSSNGRFAGRRFETTKCDVDF 226
             RFK G IK+ +FKP I+CDLKVPL S++   +G  F+ TKCDVDF
Sbjct:   189 RFKFGLIKSWRFKPKIKCDLKVPLTSNST--SGFVFQPTKCDVDF 231

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0051607 "defense response to virus" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2039185 YLS9 "AT2G35980" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 106/231 (45%), Positives = 144/231 (62%)

Query:     1 MAEQQAPLNGAYYGPAVPPPT-KHYHRPXXXXXXXXXXXLFTLLIKXXXXXXXXXXXXXX 59
             MA +Q PLNGA+YGP+VPPP  K Y+R            L +L +K              
Sbjct:     1 MAAEQ-PLNGAFYGPSVPPPAPKGYYR--RGHGRGCGCCLLSLFVKVIISLIVILGVAAL 57

Query:    60 XXXXXFRPINKVKFHVTDASLTEFNLTSNNN-LNYKLALNITIRNPNKKIGVHYDRIEAR 118
                   RP   +KFHVTDASLT F+ TS +N L Y LAL + +RNPNK+IG++YDRIEA 
Sbjct:    58 IFWLIVRP-RAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAH 116

Query:   119 VYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVK 176
              YY+ KR +++ LTPFYQGHKNT+ L P F+GQ +++   G  R  N E  +GV++I++K
Sbjct:   117 AYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIK 176

Query:   177 LKLKVRFKLGKIKTPKFKPTIECD-LKVPLNSSNGRFAGRRFETTKCDVDF 226
              +L+VRFKLG +K  + KP ++CD L++PL++SNG          KCD DF
Sbjct:   177 FRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVFPIKCDFDF 227

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0051707 "response to other organism" evidence=TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010150 "leaf senescence" evidence=IMP

GO:0051607 "defense response to virus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2098363 NHL2 "AT3G11650" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 80/164 (48%), Positives = 107/164 (65%)

Query:    65 FRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDK 124
             FRP N VKF+V DA+L  F+   NNNL+Y L LN TIRNPN+++GV+YD      YY D+
Sbjct:    77 FRP-NAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQ 135

Query:   125 RLTSVPLTPFYQGHKNTSYLNPVFEGQQ-ILLG-GALRDYNKENNAGVFSIDVKLKLKVR 182
             R  S  ++ FYQGHKNT+ +    EGQ  ++LG GA  D   +  +G++ I+ KL+L VR
Sbjct:   136 RFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKSGIYRINAKLRLSVR 195

Query:   183 FKLGKIKTPKFKPTIECD-LKVPLNSSNGRFAGRRFETTKCDVD 225
             FK   IK+ K KP I+CD LK+PL SSN    G +F+  +CD D
Sbjct:   196 FKFWFIKSWKLKPKIKCDDLKIPLGSSNST-GGFKFQPVQCDFD 238

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0051607 "defense response to virus" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2062410 AT2G35460 "AT2G35460" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 79/165 (47%), Positives = 114/165 (69%)

Query:    66 RPINKVKFHVTDASLTEFNLTS-NNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDK 124
             RP N VKF VT+A LT F     ++NL+Y ++LN +IRNPN+++G+HYD++E R YY D+
Sbjct:    77 RP-NVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGIHYDQLEVRGYYGDQ 135

Query:   125 RLTSVPLTPFYQGHKNTSYLNPVFEGQQ-ILLG-GALRDYNKENNAGVFSIDVKLKLKVR 182
             R ++  +T FYQGHKNT+ +     GQ+ +LLG G  RD+ ++  +GV+ IDVKL+ K+R
Sbjct:   136 RFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGGRRDFREDRRSGVYRIDVKLRFKLR 195

Query:   183 FKLGKIKTPKFKPTIECDLKVPLN--SSNGRFAGRRFETTKCDVD 225
             FK G + +   +P I+C LKVPL+  SS+ RF   +F  TKC VD
Sbjct:   196 FKFGFLNSWAVRPKIKCHLKVPLSTSSSDERF---QFHPTKCHVD 237

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2028336 ATSYP24 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 70/145 (48%), Positives = 91/145 (62%)

Query:    69 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTS 128
             N VKF V DA LT F+L SNNNL Y L+LN++IRN    IG+HYDR EA VYY ++RL +
Sbjct:     5 NDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGA 64

Query:   129 VPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKLKLKVRFKLG 186
             VP+  FY G KNT  L  +FEGQ ++L  G   + +  +   GV+ IDVKL +  R  + 
Sbjct:    65 VPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVL 124

Query:   187 KIKTPKFKPTIECDLKVPL--NSSN 209
              + T   KP + C LK+PL   SSN
Sbjct:   125 HLVTWPMKPVVRCHLKIPLALGSSN 149

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=ISS;RCA

GO:0016021 "integral to membrane" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2125157 AT4G01410 "AT4G01410" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 51/163 (31%), Positives = 88/163 (53%)

Query:    65 FRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDK 124
             +RP +K +  V  A++ + N T+   ++  +  ++  RNPN+++ +HYD++   V Y D+
Sbjct:    66 YRP-HKPRLTVVGAAIYDLNFTAPPLISTSVQFSVLARNPNRRVSIHYDKLSMYVTYKDQ 124

Query:   125 RLTS-VPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNA-GVFSIDVKLKLKVR 182
              +T  +PL P   GHK+T  + PV  G  I +   + +  K + A GV  + V +  ++R
Sbjct:   125 IITPPLPLPPLRLGHKSTVVIAPVMGGNGIPVSPEVANGLKNDEAYGVVLMRVVIFGRLR 184

Query:   183 FKLGKIKTPKFKPTIECDLKVPLN-SSNGRFAGRRFETTKCDV 224
             +K G IKT ++     CD+ +  N SSNG+       T K DV
Sbjct:   185 WKAGAIKTGRYGFYARCDVWLRFNPSSNGQVPLLAPSTCKVDV 227

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2098368 NHL1 "AT3G11660" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 50/167 (29%), Positives = 87/167 (52%)

Query:    69 NKVKFHVTDASLTEFNLTSN--NNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRL 126
             +K +F + DA++  FN++ N  N L     + ++ RNPN KIG++YDR++    Y  +++
Sbjct:    43 SKPRFILQDATVYAFNVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQI 102

Query:   127 T-SVPLTPFYQGHKNTSYLNPVFEGQQILLG---GALRDYNKENNAGVFSIDVKLKLKVR 182
             T    + P YQGHK+    +P   G  + +    G   D +K+N  GV  + ++   +VR
Sbjct:   103 TFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDN--GVVLLIIRADGRVR 160

Query:   183 FKLGKIKTPKFKPTIECDLKVPL-NSSNGRFAGR---RFE-TTKCDV 224
             +K+G   T K+   ++C   +   N +NG   G    ++  TT C V
Sbjct:   161 WKVGTFITGKYHLHVKCPAYINFGNKANGVIVGDNAVKYTFTTSCSV 207

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0051607 "defense response to virus" evidence=IEP

TAIR|locus:2164315 AT5G06330 "AT5G06330" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 46/161 (28%), Positives = 82/161 (50%)

Query:    69 NKVKFHVTDASLTEFNLTSN--NNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRL 126
             +K +F + DA++  FN++ N  N L       ++ RNPN KIG++YDR++    Y  +++
Sbjct:    45 SKPRFVLQDATVFNFNVSGNPPNLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQI 104

Query:   127 T-SVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDY-NKENNAGVFSIDVKLKLKVRFK 184
             T   P+   YQGHK  +  +P   G  + +      Y ++++++G   + + L  +VR+K
Sbjct:   105 TLPSPMLTTYQGHKEVNVWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWK 164

Query:   185 LGKIKTPKFKPTIECDLKVPLNSSN-GRFAGRRFETTKCDV 224
             +G   T K+   + C   +   SS  G   G+   T  C V
Sbjct:   165 VGSFITGKYHLHVRCHALINFGSSAAGVIVGKYMLTETCSV 205

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020163 AT1G54540 "AT1G54540" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 42/138 (30%), Positives = 69/138 (50%)

Query:    73 FHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRI-EARVYYDDKRLTSVPL 131
             + V    +T   +  + +L+ +  + IT RNPN+KIG++Y++     V+YD  +L   P+
Sbjct:    86 YEVNSLRVTNLGINLDLSLSAEFKVEITARNPNEKIGIYYEKGGHIGVWYDKTKLCEGPI 145

Query:   132 TPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTP 191
               FYQGH+N + LN    G+       L    ++   G   +D+K+   V  KLG +K  
Sbjct:   146 PRFYQGHRNVTKLNVALTGRAQYGNTVLAALQQQQQTGRVPLDLKVNAPVAIKLGNLKMK 205

Query:   192 KFKPTIECDLKVPLNSSN 209
             K +    C L V   S+N
Sbjct:   206 KIRILGSCKLVVDSLSTN 223

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172681 AT5G22870 "AT5G22870" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/158 (27%), Positives = 80/158 (50%)

Query:    70 KVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSV 129
             K+++ V +AS+  FNLT++N+++      I   NPN +I V+Y  +E  V + D+ L   
Sbjct:    55 KLRYTVENASVQNFNLTNDNHMSATFQFTIQSHNPNHRISVYYSSVEIFVKFKDQTLAFD 114

Query:   130 PLTPFYQGHKNTSYLNPVFEGQQILLGGAL-RDYNKENNAGVFSIDVKLKLKVRFKLGKI 188
              + PF+Q   N   ++     + + +  +  +D   +N+ G    +V +K +VRFK+G  
Sbjct:   115 TVEPFHQPRMNVKQIDETLIAENVAVSKSNGKDLRSQNSLGKIGFEVFVKARVRFKVGIW 174

Query:   189 KTPKFKPTIECD-LKVPLNSSNGRFAGRRFETTKCDVD 225
             K+      I+C  + V L+  N      + + + CD D
Sbjct:   175 KSSHRTAKIKCSHVTVSLSQPN------KSQNSSCDAD 206

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.810.1 hypothetical protein (201 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
pfam03168	98	pfam03168, LEA_2, Late embryogenesis abundant prot	2e-09

>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 98  NITIRNPNKKIGVHYDRIEARVYYDDKRLTS-VPLTPFYQGHKNTSYLNPVFEGQQILLG 156
            + +RNPN    + YD +   + Y+ + L S     P       T+ L          L 
Sbjct: 1   TLRVRNPNS-FPLPYDGLSYDLSYNGQELASGTSPQPGTVPAGGTTTLEVPVTVSLDDLA 59

Query: 157 GALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLK 202
             L+D           +++   L+ R K+G     K   T+    +
Sbjct: 60  RLLKD------LLAVGLELPYTLRGRLKVGGP--VKGSRTVPLSKE 97

Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.45
smart00769	100	WHy Water Stress and Hypersensitive response.	98.59
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	97.79
COG5608	161	LEA14-like dessication related protein [Defense me	97.72
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	97.4
PLN03160	219	uncharacterized protein; Provisional	96.49
COG4698	197	Uncharacterized protein conserved in bacteria [Fun	91.13
TIGR03602	56	streptolysinS bacteriocin protoxin, streptolysin S	88.49
PF10177	141	DUF2371: Uncharacterised conserved protein (DUF237	80.67

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=252.98  Aligned_cols=163  Identities=15%  Similarity=0.302  Sum_probs=143.6

Q ss_pred             HHHHHHHhheeeeeeCCCccEEEEeeEEEeeEeecC----CCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEee
Q 027210           52 LILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTS----NNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLT  127 (226)
Q Consensus        52 ~l~gi~~li~~lvlrP~~~P~f~v~s~~v~~~~~~~----~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg  127 (226)
                      +++++++.++|++||| |+|+|+|+++++++|+++.    +..+|++++++++++|||. ++|+|+++++.++|+|+.+|
T Consensus        49 ~l~~v~~~l~~~vfrP-k~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~g~~vG  126 (219)
T PLN03160         49 ILATTILVLVFTVFRV-KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYGGTVVG  126 (219)
T ss_pred             HHHHHHHheeeEEEEc-cCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEECCEEEE
Confidence            4466677778899999 9999999999999999864    3467888999999999998 99999999999999999999


Q ss_pred             cccCCCeeecCCCeEEEEEEEEeceecc-hhHHHHHHhhhcCCeEEEEEEEEEEEEEEEeeEecCceeeEEEeEEEEeCC
Q 027210          128 SVPLTPFYQGHKNTSYLNPVFEGQQILL-GGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLN  206 (226)
Q Consensus       128 ~~~vp~f~q~~~~~~~v~~~l~~~~v~l-~~~~~~l~~d~~~G~v~~~v~v~~~vr~~vg~~~~~~~~~~v~C~l~v~~~  206 (226)
                      ++.+|+|+|++++++.+++++......+ ++  .+|.+|.++|.++|++++++++++++|++.++++.++++|++.+++.
T Consensus       127 ~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~  204 (219)
T PLN03160        127 EARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNIT  204 (219)
T ss_pred             EEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECC
Confidence            9999999999999999998876544433 32  46889999999999999999999999999999999999999999886


Q ss_pred             CCCCCccccceecCceeec
Q 027210          207 SSNGRFAGRRFETTKCDVD  225 (226)
Q Consensus       207 ~~~~~~~~~~~~~~~C~~~  225 (226)
                      +.       .+++++|+.+
T Consensus       205 ~~-------~i~~~~C~~~  216 (219)
T PLN03160        205 SQ-------AIQGQKCKRH  216 (219)
T ss_pred             CC-------EEeccEeccc
Confidence            53       6888999876

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.45  E-value=8.6e-13  Score=96.44  Aligned_cols=98  Identities=27%  Similarity=0.461  Sum_probs=73.3

Q ss_pred             EEEEeCCCCeeEEEEceeEEEEEECCEEee-cccCCCeeecCCCeEEEEEEEEeceecchhHHHHHHhhhcCCeEEEEEE
Q 027210           98 NITIRNPNKKIGVHYDRIEARVYYDDKRLT-SVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVK  176 (226)
Q Consensus        98 ~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg-~~~vp~f~q~~~~~~~v~~~l~~~~v~l~~~~~~l~~d~~~G~v~~~v~  176 (226)
                      +|+++|||. ++++|+++++.++|+|..+| ....++|.|++++++.+.+.+..+...+   ...+.++. +|..++++.
T Consensus         1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~   75 (101)
T PF03168_consen    1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVT   75 (101)
T ss_dssp             EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEE
T ss_pred             CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEE
Confidence            589999999 99999999999999999999 7789999999999999888776654433   34455556 566777788


Q ss_pred             EEEEEEEEE-eeEecCceeeEEEeE
Q 027210          177 LKLKVRFKL-GKIKTPKFKPTIECD  200 (226)
Q Consensus       177 v~~~vr~~v-g~~~~~~~~~~v~C~  200 (226)
                      +++++++++ +.....++.+.++|+
T Consensus        76 ~~~~g~~~v~~~~~~~~~~v~~~~~  100 (101)
T PF03168_consen   76 YRIRGTFKVLGTPIFGSVRVPVSCE  100 (101)
T ss_dssp             EEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred             EEEEEEEEEcccceeeeEEEeEEeE
Confidence            888888884 443334556666664

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.59  E-value=1.4e-06  Score=64.00  Aligned_cols=61  Identities=15%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             CeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCC-CeeecCCCeEEEEEEEEe
Q 027210           89 NNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLT-PFYQGHKNTSYLNPVFEG  150 (226)
Q Consensus        89 ~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~l~~  150 (226)
                      ..++.++.++++++|||. +.+.|++++..++|+|..+|++..+ ++..++++++.+++.+..
T Consensus        11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~   72 (100)
T smart00769       11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTV   72 (100)
T ss_pred             cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEe
Confidence            456889999999999998 9999999999999999999999986 799999999999888876

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=97.79  E-value=0.0012  Score=55.62  Aligned_cols=81  Identities=14%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             CCCccEEEEeeEEEeeEeecC-CCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCCC-eeecCCCeEEE
Q 027210           67 PINKVKFHVTDASLTEFNLTS-NNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTP-FYQGHKNTSYL  144 (226)
Q Consensus        67 P~~~P~f~v~s~~v~~~~~~~-~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp~-f~q~~~~~~~v  144 (226)
                      | |.-.++-.++......++. +..+..++.-++.++|||- ..+.-.++.+++.|....+|.+.... ...+|++.+.+
T Consensus        98 P-RsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~  175 (238)
T PF07092_consen   98 P-RSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQV  175 (238)
T ss_pred             C-cEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceE
Confidence            8 7555554444444443443 4568888999999999996 99999999999999999999987654 46777777666


Q ss_pred             EEEEE
Q 027210          145 NPVFE  149 (226)
Q Consensus       145 ~~~l~  149 (226)
                      ...+.
T Consensus       176 ~~tV~  180 (238)
T PF07092_consen  176 NYTVK  180 (238)
T ss_pred             EEEee
Confidence            65543

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=97.72  E-value=0.0024  Score=50.06  Aligned_cols=111  Identities=14%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             CCCccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeeccc-CCCeeecCCCeEEEE
Q 027210           67 PINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVP-LTPFYQGHKNTSYLN  145 (226)
Q Consensus        67 P~~~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~-vp~f~q~~~~~~~v~  145 (226)
                      |.+.|...--.+..-....+     ...+-.++.++|||. +.+-...++..++-+|..+|.+. ..++..+|++...+.
T Consensus        29 ~~~~p~ve~~ka~wGkvt~s-----~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvd  102 (161)
T COG5608          29 PVKKPGVESMKAKWGKVTNS-----ETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVD  102 (161)
T ss_pred             EcCCCCceEEEEEEEEEecc-----ceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEE
Confidence            33667777666666654332     457788999999998 99999999999999999999987 467999999999988


Q ss_pred             EEEEeceecchhHHHHHHhhhcCCeE-EEEEEEEEEEEEEEeeE
Q 027210          146 PVFEGQQILLGGALRDYNKENNAGVF-SIDVKLKLKVRFKLGKI  188 (226)
Q Consensus       146 ~~l~~~~v~l~~~~~~l~~d~~~G~v-~~~v~v~~~vr~~vg~~  188 (226)
                      +.+..+.-.+.   +-+....++|.- .  ++++.+..+++|..
T Consensus       103 v~l~~d~~~~k---e~w~~hi~ngErs~--Ir~~i~~~v~vg~~  141 (161)
T COG5608         103 VPLRLDNSKIK---EWWVTHIENGERST--IRVRIKGVVKVGGM  141 (161)
T ss_pred             EEEEEehHHHH---HHHHHHhhccCccc--EEEEEEEEEEEccE
Confidence            87765543331   224444555532 2  33333444555544

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=97.40  E-value=0.0027  Score=56.89  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             eEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEee
Q 027210           92 NYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLT  127 (226)
Q Consensus        92 ~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg  127 (226)
                      -.-|++++.+.|||- +.|..++.++.|+-+-.-+|
T Consensus       347 ELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg  381 (387)
T PF12751_consen  347 ELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVG  381 (387)
T ss_pred             eEEEeeEEEEECCCe-EEEEeccceeeeEecCCccC
Confidence            455788999999997 99999999999997655444

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PLN03160 uncharacterized protein; Provisional

Probab=96.49  E-value=0.059  Score=45.19  Aligned_cols=90  Identities=13%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhheeeeeeCCC--ccEEEEeeEEEee-------Eeec--CC-CeeeEEEEEEEEEeCCCCeeEEEEc
Q 027210           46 IIVSAVLILGLAALIVWLIFRPIN--KVKFHVTDASLTE-------FNLT--SN-NNLNYKLALNITIRNPNKKIGVHYD  113 (226)
Q Consensus        46 ~~l~l~~l~gi~~li~~lvlrP~~--~P~f~v~s~~v~~-------~~~~--~~-~~l~~~l~~~l~~~NPN~~~~i~Y~  113 (226)
                      +++++++++++++++++=--.| +  .-.++++++.+..       +|++  .+ ..-|.|. +.+.-+  |..+.++|+
T Consensus        46 ~~l~l~~v~~~l~~~vfrPk~P-~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~--~~~~~v~Y~  121 (219)
T PLN03160         46 TLLILATTILVLVFTVFRVKDP-VIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYS--NTTTTIYYG  121 (219)
T ss_pred             HHHHHHHHHHheeeEEEEccCC-eEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEc--CeEEEEEEC
Confidence            3444556666666666666666 4  3566666666532       2221  00 0113333 334443  344899998


Q ss_pred             eeEEEEEECCEEeecccCCCeeecCCCeEE
Q 027210          114 RIEARVYYDDKRLTSVPLTPFYQGHKNTSY  143 (226)
Q Consensus       114 ~~~v~v~Y~g~~lg~~~vp~f~q~~~~~~~  143 (226)
                      ...+.-    ..+..+..++..+..-+.+.
T Consensus       122 g~~vG~----a~~p~g~~~ar~T~~l~~tv  147 (219)
T PLN03160        122 GTVVGE----ARTPPGKAKARRTMRMNVTV  147 (219)
T ss_pred             CEEEEE----EEcCCcccCCCCeEEEEEEE
Confidence            765543    23555666666666665553

>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.13  E-value=0.79  Score=37.06  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhheeeeeeCCCccEEEEeeEEE
Q 027210           39 LFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASL   80 (226)
Q Consensus        39 ~~~~l~~~~l~l~~l~gi~~li~~lvlrP~~~P~f~v~s~~v   80 (226)
                      +|.++|+++|++.++++  ++++.+++.| +.|...+.+.+=
T Consensus        10 ~WKw~f~iLLAln~l~~--~~i~~~vlsp-~ee~t~~~~a~~   48 (197)
T COG4698          10 YWKWLFFILLALNTLLA--VLIALFVLSP-REEPTHLEDASE   48 (197)
T ss_pred             HHHHHHHHHHHHHHHHH--HHhheeeccC-CCCCchhhccCc
Confidence            58999988887766655  6667778999 997666665543

>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family

Probab=88.49  E-value=0.14  Score=32.23  Aligned_cols=8  Identities=75%  Similarity=2.295  Sum_probs=4.1

Q ss_pred             CCcccchh
Q 027210           31 GGCGGCCC   38 (226)
Q Consensus        31 ~~c~~ccc   38 (226)
                      ++||||||
T Consensus        24 ggcccccc   31 (56)
T TIGR03602        24 GGCCCCCC   31 (56)
T ss_pred             CCeEEEec
Confidence            55555544

Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.

>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans

Probab=80.67  E-value=3.1  Score=32.50  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhheeeeeeCCC
Q 027210           37 CCLFTLLIKIIVSAVLILGLAALIVWLIFRPIN   69 (226)
Q Consensus        37 cc~~~~l~~~~l~l~~l~gi~~li~~lvlrP~~   69 (226)
                      ||+.+.+++++=++++++|+++.++  =|.| +
T Consensus        35 l~s~Sg~~l~lG~lvllvGiaMAv~--GYwp-~   64 (141)
T PF10177_consen   35 LCSPSGLFLLLGILVLLVGIAMAVL--GYWP-K   64 (141)
T ss_pred             EecHHHHHHHHHHHHHHHhhHhhee--eccc-c
Confidence            4566776666666677777765443  3567 5

It includes members of the TMEM200 family of transmembrane proteins.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
1xo8_A	151	AT1G01470; structural genomics, protein structure	98.35
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.31
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	98.01

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=98.35  E-value=5.3e-07  Score=70.24  Aligned_cols=102  Identities=16%  Similarity=0.123  Sum_probs=77.0

Q ss_pred             CccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCC-CeeecCCCeEEEEEE
Q 027210           69 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLT-PFYQGHKNTSYLNPV  147 (226)
Q Consensus        69 ~~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~  147 (226)
                      +.|++++.++++.+++..     ..++.+.++++|||. ..+.+..++..+.-+|..++++..+ ++..++++++.+.+.
T Consensus        20 ~~P~v~v~~v~~~~~~~~-----~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vp   93 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNRD-----SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIP   93 (151)
T ss_dssp             CSCCCBCSEEEECCCTTT-----EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEEC
T ss_pred             CCCEEEEEEeEEeccCcc-----eeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEE
Confidence            569999999998876543     568999999999998 9999999999999999999999886 588999999988876


Q ss_pred             EEeceecchhHHHHHHhhhcCCeEEEEEEEEE
Q 027210          148 FEGQQILLGGALRDYNKENNAGVFSIDVKLKL  179 (226)
Q Consensus       148 l~~~~v~l~~~~~~l~~d~~~G~v~~~v~v~~  179 (226)
                      ++.....+.....++..   .+.++.+++++.
T Consensus        94 v~v~~~~l~~~~~~l~~---~~~i~Y~l~g~l  122 (151)
T 1xo8_A           94 VVVPYSILFNLARDVGV---DWDIDYELQIGL  122 (151)
T ss_dssp             CCEEHHHHHHHHHHHHH---HSEEEEEEEEEE
T ss_pred             EEEEHHHHHHHHHhccc---CCcccEEEEEEE
Confidence            65543222233333432   346666655444

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.31  E-value=1.6e-06  Score=68.91  Aligned_cols=77  Identities=12%  Similarity=0.108  Sum_probs=68.3

Q ss_pred             CccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCC-CeeecCCCeEEEEEE
Q 027210           69 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLT-PFYQGHKNTSYLNPV  147 (226)
Q Consensus        69 ~~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~  147 (226)
                      +.|++++.++++.+++..     ..++.+.++++|||. ..+.+..++..+.-+|..++++..+ ++..++++++.+.+.
T Consensus        43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vp  116 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVP  116 (174)
T ss_dssp             CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEE
T ss_pred             CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEE
Confidence            459999999999987665     478999999999998 9999999999999999999999887 488999999998887


Q ss_pred             EEec
Q 027210          148 FEGQ  151 (226)
Q Consensus       148 l~~~  151 (226)
                      +...
T Consensus       117 v~v~  120 (174)
T 1yyc_A          117 VKVA  120 (174)
T ss_dssp             EEES
T ss_pred             EEEE
Confidence            7654

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=98.01  E-value=0.0001  Score=56.26  Aligned_cols=63  Identities=8%  Similarity=0.070  Sum_probs=55.8

Q ss_pred             eEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeeccc-CCCeeecCCCeEEEEEEEEeceecc
Q 027210           92 NYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVP-LTPFYQGHKNTSYLNPVFEGQQILL  155 (226)
Q Consensus        92 ~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~-vp~f~q~~~~~~~v~~~l~~~~v~l  155 (226)
                      ...+.+.++++|||. ..+.++.++..+...|..+|++. ...+..++.+++.+.+.+..+...+
T Consensus        17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l   80 (136)
T 3but_A           17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFL   80 (136)
T ss_dssp             EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHH
T ss_pred             EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHh
Confidence            577899999999998 99999999999999999999987 6789999999888888887765554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.36

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.36  E-value=2.2e-07  Score=70.52  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             CccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCC-CeeecCCCeEEEEEE
Q 027210           69 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLT-PFYQGHKNTSYLNPV  147 (226)
Q Consensus        69 ~~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~  147 (226)
                      +.|++++.++++.+++..     ..++.++++++|||. .++..+.++..++.+|..++++..+ ++..++++++.+.+.
T Consensus        20 ~kPev~l~~v~i~~v~~~-----~~~l~~~l~V~NPN~-~~l~i~~l~y~l~~~g~~ia~G~~~~~~~ipa~~~~~v~vp   93 (151)
T d1xo8a_          20 PKPEGSVTDVDLKDVNRD-----SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIP   93 (151)
T ss_dssp             CSCCCBCSEEEECCCTTT-----EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEEC
T ss_pred             CCCeEEEEEEEeeecccc-----eEEEEEEEEEECCCC-CceeeeeEEEEEEECCEEEEeEecCCCcEEcCCCcEEEEEE
Confidence            679999999999887654     678999999999998 9999999999999999999999876 578889999998876


Q ss_pred             EEec
Q 027210          148 FEGQ  151 (226)
Q Consensus       148 l~~~  151 (226)
                      +...
T Consensus        94 v~v~   97 (151)
T d1xo8a_          94 VVVP   97 (151)
T ss_dssp             CCEE
T ss_pred             EEEE
Confidence            6543