Citrus Sinensis ID: 027256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEvdylsrtpllrlpsfWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVgslnkiplsVAGILLfkvptslensASIFFGLLAGVFFARAKMWERSQSG
Flexible Loop (DISEMBL)
MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Low Complexity Region (SEG)
MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Disordered region (IsUnstruct)
*FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW******
Disordered Region (DISOPRED)
MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR***W******
Disordered Region (DISEMBL)
MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Disordered Region (DISPRO)
MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q941R4	333	GDP-mannose transporter G	yes	no	0.960	0.651	0.880	1e-102
Q84L09	375	GDP-mannose transporter G	no	no	0.942	0.568	0.713	3e-84
Q2AAF6	329	GDP-mannose transporter O	yes	no	0.924	0.635	0.311	2e-25
Q4WTQ6	382	GDP-mannose transporter O	yes	no	0.920	0.544	0.315	6e-25
B0Y384	382	GDP-mannose transporter O	N/A	no	0.920	0.544	0.315	6e-25
A1CZJ3	382	GDP-mannose transporter 1	N/A	no	0.920	0.544	0.310	1e-24
A1C9R4	381	GDP-mannose transporter O	N/A	no	0.920	0.545	0.310	2e-24
Q6C0U0	326	GDP-mannose transporter O	yes	no	0.915	0.634	0.289	8e-24
Q753T9	329	GDP-mannose transporter O	yes	no	0.920	0.632	0.302	1e-23
Q9UTK8	345	GDP-mannose transporter O	yes	no	0.924	0.605	0.308	2e-23

>sp|Q941R4|GONS1_ARATH GDP-mannose transporter GONST1 OS=Arabidopsis thaliana GN=GONST1 PE=1 SV=2

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct: 117 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 176

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct: 177 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFF 236

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 237 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 296

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223
           AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct: 297 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 333

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen. Required for the luminal synthesis of a variety of plant cell surface components.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84L09|GONS2_ARATH GDP-mannose transporter GONST2 OS=Arabidopsis thaliana GN=GONST2 PE=2 SV=1

 Score =  311 bits (796), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 152/213 (71%), Positives = 179/213 (84%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVT+LKN TN++T +GE+Y+F KR +N+VWAA+F+MIISAISGGITDL+F A
Sbjct: 162 SLKYINVAMVTILKNATNILTGIGEVYMFRKRQNNKVWAAMFMMIISAISGGITDLTFDA 221

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           VGY WQ+ NCFLTASYSLTLRRVMD AKQ TKSG+LNE SMVLLNN LS+P G++L+I+ 
Sbjct: 222 VGYTWQLANCFLTASYSLTLRRVMDKAKQSTKSGSLNEVSMVLLNNLLSIPFGIILIILL 281

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
            E  Y+  T + +   FW+V T SGFLGLAISFTSMWFLHQTG TTYSLVGSLNK+P+S+
Sbjct: 282 GEWRYVISTDVTKDSMFWVVATASGFLGLAISFTSMWFLHQTGPTTYSLVGSLNKVPISL 341

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKM 219
           AG++LF VP SL N  SI FGL AGV FARAKM
Sbjct: 342 AGLVLFNVPLSLPNLFSILFGLFAGVVFARAKM 374

GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2AAF6|GMT_PICPA GDP-mannose transporter OS=Komagataella pastoris GN=VIG4 PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 22/231 (9%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD----- 61
           +L+Y+++ + T+ KN+T ++ A GE+  F  R  N    +  LM++S+      D     
Sbjct: 100 ALQYLSIPIYTIFKNLTIILIAYGEVIWFGGRVTNLALGSFVLMVLSSAVASYGDSNVDT 159

Query: 62  --LSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLG 119
             L+F+ +GY W   NCF +A++ L +R+ +       K  N  +F  +  NN LS+P  
Sbjct: 160 GKLNFN-IGYFWMFTNCFSSAAFVLFMRKRI-------KLTNFKDFDTMYYNNLLSIP-- 209

Query: 120 VLLVIVFNEVDYLSRTPLLRLP-----SFWLVMTLSGFLGLAISFTSMWFLHQTGATTYS 174
           +LL       D+ ++      P     +    M +SG   + IS+TS W +  T +TTYS
Sbjct: 210 ILLFASLTTEDWSAKNIAQNFPEDTKYAVIASMIISGMSAVGISYTSAWCVRVTSSTTYS 269

Query: 175 LVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 225
           +VG+LNK+P++++G+L FK P +  + +SIF G  AG+ +A AK  ++ + 
Sbjct: 270 MVGALNKLPIALSGLLFFKAPINFYSISSIFIGFAAGLVYAIAKQKQKKED 320

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Pichia pastoris (taxid: 4922)

>sp|Q4WTQ6|GMT_ASPFU GDP-mannose transporter OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=gmt1 PE=3 SV=1

 Score =  114 bits (284), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 30/238 (12%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           +L+Y+++ + T+ KN+T ++ A GE+  F          +  LM++S+I     D+  HA
Sbjct: 129 ALQYLSIPVYTIFKNLTIILIAYGEVLWFGGSVTGLTLFSFGLMVLSSIIAAWADIK-HA 187

Query: 67  V---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN 111
           V               GY W +INC  T+SY L +R+ +       K  N  +F  +  N
Sbjct: 188 VESSGDATAKVSTLNAGYIWMLINCLCTSSYVLGMRKRI-------KLTNFKDFDTMFYN 240

Query: 112 NSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFLH 166
           N LS+P  VLLV+ F   D+ S       PS         M LSG   + IS+TS W + 
Sbjct: 241 NLLSIP--VLLVLTFLMEDWSSANIARNFPSTDRNGILFAMILSGLSSVFISYTSAWCVR 298

Query: 167 QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
            T +TTYS+VG+LNK+P++++G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct: 299 VTSSTTYSMVGALNKLPIALSGLIFFDAPVTFPSVSAIVVGFISGIVYAVAKIKQSAK 356

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|B0Y384|GMT_ASPFC GDP-mannose transporter OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=gmt1 PE=3 SV=1

 Score =  114 bits (284), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 30/238 (12%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           +L+Y+++ + T+ KN+T ++ A GE+  F          +  LM++S+I     D+  HA
Sbjct: 129 ALQYLSIPVYTIFKNLTIILIAYGEVLWFGGSVTGLTLFSFGLMVLSSIIAAWADIK-HA 187

Query: 67  V---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN 111
           V               GY W +INC  T+SY L +R+ +       K  N  +F  +  N
Sbjct: 188 VESSGDATAKVSTLNAGYIWMLINCLCTSSYVLGMRKRI-------KLTNFKDFDTMFYN 240

Query: 112 NSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFLH 166
           N LS+P  VLLV+ F   D+ S       PS         M LSG   + IS+TS W + 
Sbjct: 241 NLLSIP--VLLVLTFLMEDWSSANIARNFPSTDRNGILFAMILSGLSSVFISYTSAWCVR 298

Query: 167 QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
            T +TTYS+VG+LNK+P++++G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct: 299 VTSSTTYSMVGALNKLPIALSGLIFFDAPVTFPSVSAIVVGFISGIVYAVAKIKQSAK 356

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) (taxid: 451804)

>sp|A1CZJ3|GMT1_NEOFI GDP-mannose transporter 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gmt1 PE=3 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 30/238 (12%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           +L+Y+++ + T+ KN+T ++ A GE+  F          +  LM++S+I     D+  HA
Sbjct: 129 ALQYLSIPVYTIFKNLTIILIAYGEVLWFGGSVTGMTLFSFGLMVLSSIIAAWADIK-HA 187

Query: 67  V---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN 111
           V               GY W +INC  T+SY L +R+ +       K  N  +F  +  N
Sbjct: 188 VESSGDATAKVSTLNAGYIWMLINCLCTSSYVLGMRKRI-------KLTNFKDFDTMFYN 240

Query: 112 NSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFLH 166
           N LS+P  VLLV+ F   D+ S       P          M LSG   + IS+TS W + 
Sbjct: 241 NLLSIP--VLLVLTFLMEDWSSANIARNFPPADRNGILFAMILSGLSSVFISYTSAWCVR 298

Query: 167 QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
            T +TTYS+VG+LNK+P++++G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct: 299 VTSSTTYSMVGALNKLPIALSGLIFFDAPVTFPSVSAIVVGFISGIVYAVAKIKQSAK 356

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|A1C9R4|GMT_ASPCL GDP-mannose transporter OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=gmt1 PE=3 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 30/238 (12%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           +L+++++ + T+ KN+T ++ A GE+  F          +  LM++S+I     D+  HA
Sbjct: 129 ALQFLSIPVYTIFKNLTIILIAYGEVLWFGGSVTGLTLFSFGLMVLSSIIAAWADIK-HA 187

Query: 67  V---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN 111
           V               GY W +INC  T+SY L +R+ +       K  N  +F  +  N
Sbjct: 188 VESSGDATAKVSTLNAGYIWMLINCLCTSSYVLGMRKRI-------KLTNFKDFDTMFYN 240

Query: 112 NSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFLH 166
           N LS+P  VLLV+ F   D+ S       P          M LSG   + IS+TS W + 
Sbjct: 241 NLLSIP--VLLVLTFLMEDWSSANITRNFPPADRNGIMFAMILSGLSSVFISYTSAWCVR 298

Query: 167 QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
            T +TTYS+VG+LNK+P++V+G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct: 299 VTSSTTYSMVGALNKLPIAVSGLIFFDAPVTFPSVSAIVVGFVSGIVYAVAKIKQNAK 356

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|Q6C0U0|GMT_YARLI GDP-mannose transporter OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VRG4 PE=3 SV=1

 Score =  110 bits (275), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 129/235 (54%), Gaps = 28/235 (11%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISA-------ISGGI 59
           +L+++++ + T+ KN+T ++ A GE+  F     +   A+  LM++S+       ISG I
Sbjct: 93  ALQFLSIPVYTIFKNLTIILIAYGEVLWFGGSVTSMALASFVLMVLSSVIAAWSDISGAI 152

Query: 60  -------TDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNN 112
                  T ++   +GY W + NCF +A++ L +R+ +       K  N  +F     NN
Sbjct: 153 AVSGSATTTVTALNIGYFWMMSNCFASAAFVLYMRKRI-------KLTNFGDFDTTFYNN 205

Query: 113 SLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFLHQ 167
            LS+P+ ++  ++F   D+      +  P       +  M +SG + + IS+ S W +  
Sbjct: 206 LLSIPVLLIASLLFE--DWSPANLAVNFPPESRNLIFFSMVVSGLMSIGISYCSAWCVRV 263

Query: 168 TGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 222
           T +TTYS+VG+LNK+PL+++GI+ F  P +  + ++IF G +AG+ +A A++ ++
Sbjct: 264 TSSTTYSMVGALNKLPLALSGIVFFGTPATFSSVSAIFVGFVAGIVYAVAQIQKK 318

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q753T9|GMT_ASHGO GDP-mannose transporter OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VRG4 PE=3 SV=2

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 27/235 (11%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           +LKY+ V + T+ KN+T ++ A GE+  F  R      ++  L+++S++   + D    A
Sbjct: 102 ALKYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTAMELSSFLLIVLSSVVATLGDQQALA 161

Query: 67  ---------------VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN 111
                          VGY W   NC  +A + L +R+ +   K         +F  +  N
Sbjct: 162 KKPLAAAVESILGLNVGYFWMFTNCICSALFVLIMRKRIALTK-------FKDFDTMFYN 214

Query: 112 NSLSLPLGVLLVIVFNE--VDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTG 169
           N LSLPL +L   +F +     ++R        + ++M +SG   + IS+ S W +  T 
Sbjct: 215 NILSLPLLMLASFMFEDWGAANIARN---LTKDYIIIMIISGLASVGISYCSGWCVRVTS 271

Query: 170 ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
           +TTYS+VG+LNK+P++++G+L F  P +  +  SIF G L+G+ +A AK  ++SQ
Sbjct: 272 STTYSMVGALNKLPIALSGLLFFDAPKNFLSIFSIFLGFLSGIVYAVAKQKKQSQ 326

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q9UTK8|GMT_SCHPO GDP-mannose transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vrg4 PE=3 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 21/230 (9%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---S 63
           +L++++V + T+ KN+T +I A GE+  F          +  LM++S+I     D+   S
Sbjct: 97  ALQFLSVPVYTIFKNLTIIIIAYGEVLWFGGHVTALTLFSFGLMVLSSIVAAWADIQSSS 156

Query: 64  FHAV----GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLG 119
           F +     GY W ++NC   A++ L +R+ +       K  N  +F  +  NN LS+P+ 
Sbjct: 157 FASQTLNSGYLWMVLNCLTNAAFVLAMRKRI-------KLTNFRDFDTMFYNNLLSIPVL 209

Query: 120 VLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFLHQTGATTYS 174
           V+  + F E D+ +       P        + M +SG   + IS+TS W +  T +TTYS
Sbjct: 210 VICTL-FTE-DWSAENIAQNFPPDAKFGVLMAMAISGVSSVGISYTSAWCVRVTSSTTYS 267

Query: 175 LVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
           +VG+LNK+PL++AG++ F  P +  +  +I  G ++GV +A AK  ++ Q
Sbjct: 268 MVGALNKLPLAIAGLVFFDAPITFGSVTAILLGFISGVVYAVAKSQQQRQ 317

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
296088545	648	unnamed protein product [Vitis vinifera]	0.969	0.337	0.922	1e-112
224080961	336	predicted protein [Populus trichocarpa]	0.960	0.645	0.917	1e-110
449513327	336	PREDICTED: GDP-mannose transporter GONST	0.969	0.651	0.904	1e-110
224093398	300	predicted protein [Populus trichocarpa]	0.942	0.71	0.915	1e-108
449459266	543	PREDICTED: GDP-mannose transporter GONST	0.973	0.405	0.895	1e-108
356507466	340	PREDICTED: GDP-mannose transporter GONST	0.969	0.644	0.885	1e-107
297836010	332	GONST1 [Arabidopsis lyrata subsp. lyrata	0.960	0.653	0.880	1e-101
357464677	342	GDP-mannose transporter [Medicago trunca	0.969	0.640	0.890	1e-101
15487237	333	GDP-Mannose transporter [Arabidopsis tha	0.960	0.651	0.880	1e-100
18397301	333	GDP-mannose transporter [Arabidopsis tha	0.960	0.651	0.880	1e-100

>gi|296088545|emb|CBI37536.3| unnamed protein product [Vitis vinifera]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/219 (92%), Positives = 212/219 (96%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK HDNRVWAALFLMIISAISGGITDLSF+ 
Sbjct: 430 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKHHDNRVWAALFLMIISAISGGITDLSFNG 489

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           +GY WQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNN+LSLPLGV+L+ VF
Sbjct: 490 IGYTWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGVILMFVF 549

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NEVDYLS TPLLRLP+FWLVMTLSGFLGLAISF+SMWFLHQTGATTYSLVGSLNKIPLSV
Sbjct: 550 NEVDYLSTTPLLRLPTFWLVMTLSGFLGLAISFSSMWFLHQTGATTYSLVGSLNKIPLSV 609

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 225
           AGI+LF VPTSLENSASIFFGL+AGVFFA+AKM ERSQS
Sbjct: 610 AGIVLFHVPTSLENSASIFFGLVAGVFFAKAKMRERSQS 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080961|ref|XP_002306245.1| predicted protein [Populus trichocarpa] gi|222855694|gb|EEE93241.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 210/217 (96%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVTVLKNVTNVITA+GEMYLF K HD+RVWAALFLMIISAISGGITDLSFHA
Sbjct: 120 SLKYINVAMVTVLKNVTNVITALGEMYLFQKDHDSRVWAALFLMIISAISGGITDLSFHA 179

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           VGYAWQI+NCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV+LNN+LSLPLG++L+ VF
Sbjct: 180 VGYAWQILNCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVMLNNTLSLPLGLILIFVF 239

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NEVDYLSRTPLLRLP+FWLV+TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV
Sbjct: 240 NEVDYLSRTPLLRLPTFWLVVTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 299

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223
           AGILLF VPTSL+NSASI FGLLAGV FARAKM ERS
Sbjct: 300 AGILLFHVPTSLQNSASILFGLLAGVIFARAKMRERS 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449513327|ref|XP_004164296.1| PREDICTED: GDP-mannose transporter GONST1-like [Cucumis sativus]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/219 (90%), Positives = 208/219 (94%)

Query: 5   ICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 64
           I SLKYINVAMVTVLKNVTNVITAVGEMYLF K HDNRVWAALFLMIISAI+GG+TDLSF
Sbjct: 118 IFSLKYINVAMVTVLKNVTNVITAVGEMYLFGKHHDNRVWAALFLMIISAITGGLTDLSF 177

Query: 65  HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVI 124
           HAVGYAWQIINCFLTASYSLTLRRVMDTAKQ+TKSGNLNEFSMVLLNN+LSLPLG+ LV 
Sbjct: 178 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQLTKSGNLNEFSMVLLNNTLSLPLGIFLVF 237

Query: 125 VFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPL 184
           VFNE+DYLSRTPLLRLP FWLV+T SG LGL ISFTSMWFLHQTGATTYSLVGSLNKIPL
Sbjct: 238 VFNEIDYLSRTPLLRLPMFWLVITFSGVLGLGISFTSMWFLHQTGATTYSLVGSLNKIPL 297

Query: 185 SVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223
           S+AGI LFKVPTS+ENSASIFFGLLAGVFFARAK+ ERS
Sbjct: 298 SIAGIFLFKVPTSVENSASIFFGLLAGVFFARAKIRERS 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093398|ref|XP_002309911.1| predicted protein [Populus trichocarpa] gi|222852814|gb|EEE90361.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/213 (91%), Positives = 205/213 (96%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVT+LKNVTNVITAVGEMYLF K HD+RVWAALFLMIISAISGGITDLSFHA
Sbjct: 88  SLKYINVAMVTILKNVTNVITAVGEMYLFQKDHDSRVWAALFLMIISAISGGITDLSFHA 147

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           VGYAWQIINCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMV+LNN+LSLPLG++L+ VF
Sbjct: 148 VGYAWQIINCFLTASYSLTLRRVMDTAKHVTKSGNLNEFSMVMLNNTLSLPLGLILIFVF 207

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NEVDYLSRTPLLRLP+FW V+TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV
Sbjct: 208 NEVDYLSRTPLLRLPTFWFVVTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 267

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKM 219
           AGI LF VPTSL+NSASI FGLLAGVFFARAKM
Sbjct: 268 AGIFLFHVPTSLQNSASILFGLLAGVFFARAKM 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459266|ref|XP_004147367.1| PREDICTED: GDP-mannose transporter GONST1-like [Cucumis sativus]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/220 (89%), Positives = 207/220 (94%)

Query: 5   ICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 64
           I SLKYINVAMVTVLKNVTNVITAVGEMYLF K HDNRVWAALFLMIISAI+GG+TDLSF
Sbjct: 118 IFSLKYINVAMVTVLKNVTNVITAVGEMYLFGKHHDNRVWAALFLMIISAITGGLTDLSF 177

Query: 65  HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVI 124
           HAVGYAWQIINCFLTASYSLTLRRVMDTAKQ+TKSGNLNEFSMVLLNN+LSLPLG+ LV 
Sbjct: 178 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQLTKSGNLNEFSMVLLNNTLSLPLGIFLVF 237

Query: 125 VFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPL 184
           VFNE+DYLSRTPLLRLP FWLV+T SG LGL ISFTSMWFLHQTGATTYSLVGSLNKIPL
Sbjct: 238 VFNEIDYLSRTPLLRLPMFWLVITFSGVLGLGISFTSMWFLHQTGATTYSLVGSLNKIPL 297

Query: 185 SVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
           S+AGI LFKVPTS+ENSASIFFGLLAGVFFARAK+ ER  
Sbjct: 298 SIAGIFLFKVPTSVENSASIFFGLLAGVFFARAKIRERKN 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507466|ref|XP_003522487.1| PREDICTED: GDP-mannose transporter GONST1-like [Glycine max]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/219 (88%), Positives = 208/219 (94%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVTVLKNVTNVITA+GEMYLF K HD +VWA+LFLMIISAI+GGITDLSF+A
Sbjct: 122 SLKYINVAMVTVLKNVTNVITALGEMYLFKKHHDGKVWASLFLMIISAITGGITDLSFNA 181

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           VGYAWQ +NCFLTASYSL L+RVMDTAKQVTKSGNLNEFSMVLLNN+LS+PLG+ L+IVF
Sbjct: 182 VGYAWQTLNCFLTASYSLMLQRVMDTAKQVTKSGNLNEFSMVLLNNTLSVPLGIFLIIVF 241

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NE+DYL  TPLLRLPSFWLVMT SGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 242 NEMDYLLSTPLLRLPSFWLVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 301

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 225
           AGILLFKVPTSLENSASI FGLLAGVFFARAK+ ERSQS
Sbjct: 302 AGILLFKVPTSLENSASILFGLLAGVFFARAKIRERSQS 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836010|ref|XP_002885887.1| GONST1 [Arabidopsis lyrata subsp. lyrata] gi|297331727|gb|EFH62146.1| GONST1 [Arabidopsis lyrata subsp. lyrata]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct: 116 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 175

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct: 176 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSFSF 235

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 236 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 295

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223
           AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct: 296 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464677|ref|XP_003602620.1| GDP-mannose transporter [Medicago truncatula] gi|355491668|gb|AES72871.1| GDP-mannose transporter [Medicago truncatula]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/219 (89%), Positives = 206/219 (94%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVTVLKNVTNVITAVGEMYLF+K H+ RVWAALFLMIISAI+GGITDLSF+A
Sbjct: 124 SLKYINVAMVTVLKNVTNVITAVGEMYLFSKHHEGRVWAALFLMIISAITGGITDLSFNA 183

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
            GY WQ +NCFLTASYSLTLRRVMDTAKQ TKSGNLNEF+MVLLNN+LSLPLG+ L++VF
Sbjct: 184 TGYVWQTLNCFLTASYSLTLRRVMDTAKQYTKSGNLNEFTMVLLNNTLSLPLGIFLMLVF 243

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NEVDYL RTPLLRLPSFWLVMT SG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV
Sbjct: 244 NEVDYLLRTPLLRLPSFWLVMTFSGVLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 303

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 225
           AGILLFKVPTSLENSASI FGLLAGV FARAK+ ERSQS
Sbjct: 304 AGILLFKVPTSLENSASILFGLLAGVLFARAKIRERSQS 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15487237|emb|CAC69066.1| GDP-Mannose transporter [Arabidopsis thaliana]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct: 117 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 176

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct: 177 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFF 236

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 237 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 296

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223
           AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct: 297 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397301|ref|NP_565357.1| GDP-mannose transporter [Arabidopsis thaliana] gi|334184214|ref|NP_001189524.1| GDP-mannose transporter [Arabidopsis thaliana] gi|26006780|sp|Q941R4.2|GONS1_ARATH RecName: Full=GDP-mannose transporter GONST1; AltName: Full=Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1 gi|20198047|gb|AAD22687.2| putative vanadate resistance protein [Arabidopsis thaliana] gi|330251156|gb|AEC06250.1| GDP-mannose transporter [Arabidopsis thaliana] gi|330251158|gb|AEC06252.1| GDP-mannose transporter [Arabidopsis thaliana]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct: 117 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 176

Query: 67  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
           VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct: 177 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFF 236

Query: 127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
           NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 237 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 296

Query: 187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223
           AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct: 297 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2054090	333	GONST1 "AT2G13650" [Arabidopsi	0.960	0.651	0.880	4.5e-98
TAIR|locus:2025047	375	GONST2 "AT1G07290" [Arabidopsi	0.942	0.568	0.713	3.3e-79
POMBASE|SPAC144.18	345	vrg4 "Golgi GDP-mannose transp	0.924	0.605	0.317	5.2e-26
CGD|CAL0002875	371	VRG4 [Candida albicans (taxid:	0.924	0.563	0.306	5.9e-25
UNIPROTKB|Q5A477	371	VRG4 "GDP-mannose transporter"	0.924	0.563	0.306	5.9e-25
ASPGD|ASPL0000072017	379	gmtA [Emericella nidulans (tax	0.920	0.548	0.302	2.6e-24
SGD|S000000841	249	HVG1 "Protein of unknown funct	0.898	0.815	0.302	3.8e-23
SGD|S000003193	337	VRG4 "Golgi GDP-mannose transp	0.898	0.602	0.298	7e-22
DICTYBASE|DDB_G0278631	382	DDB_G0278631 "DUF250 family pr	0.902	0.534	0.271	4e-21
DICTYBASE|DDB_G0277007	368	DDB_G0277007 "GDP-fucose trans	0.907	0.557	0.219	1.8e-14

TAIR|locus:2054090 GONST1 "AT2G13650" [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
             SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct:   117 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 176

Query:    67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
             VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct:   177 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFF 236

Query:   127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
             NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct:   237 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 296

Query:   187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223
             AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct:   297 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 333

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IDA

GO:0015784 "GDP-mannose transport" evidence=IGI;IDA;IMP

TAIR|locus:2025047 GONST2 "AT1G07290" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 152/213 (71%), Positives = 179/213 (84%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
             SLKYINVAMVT+LKN TN++T +GE+Y+F KR +N+VWAA+F+MIISAISGGITDL+F A
Sbjct:   162 SLKYINVAMVTILKNATNILTGIGEVYMFRKRQNNKVWAAMFMMIISAISGGITDLTFDA 221

Query:    67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
             VGY WQ+ NCFLTASYSLTLRRVMD AKQ TKSG+LNE SMVLLNN LS+P G++L+I+ 
Sbjct:   222 VGYTWQLANCFLTASYSLTLRRVMDKAKQSTKSGSLNEVSMVLLNNLLSIPFGIILIILL 281

Query:   127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
              E  Y+  T + +   FW+V T SGFLGLAISFTSMWFLHQTG TTYSLVGSLNK+P+S+
Sbjct:   282 GEWRYVISTDVTKDSMFWVVATASGFLGLAISFTSMWFLHQTGPTTYSLVGSLNKVPISL 341

Query:   187 AGILLFKVPTSLENSASIFFGLLAGVFFARAKM 219
             AG++LF VP SL N  SI FGL AGV FARAKM
Sbjct:   342 AGLVLFNVPLSLPNLFSILFGLFAGVVFARAKM 374

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0055085 "transmembrane transport" evidence=ISS

GO:0015780 "nucleotide-sugar transport" evidence=IGI

GO:0015784 "GDP-mannose transport" evidence=IGI

POMBASE|SPAC144.18 vrg4 "Golgi GDP-mannose transporter Vrg4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 73/230 (31%), Positives = 126/230 (54%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---S 63
             +L++++V + T+ KN+T +I A GE+  F          +  LM++S+I     D+   S
Sbjct:    97 ALQFLSVPVYTIFKNLTIIIIAYGEVLWFGGHVTALTLFSFGLMVLSSIVAAWADIQSSS 156

Query:    64 FHAV----GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLG 119
             F +     GY W ++NC   A++ L +R      K++ K  N  +F  +  NN LS+P+ 
Sbjct:   157 FASQTLNSGYLWMVLNCLTNAAFVLAMR------KRI-KLTNFRDFDTMFYNNLLSIPVL 209

Query:   120 VLLVIVFNEVDYLSRTPLLRLP---SFWLVMTL--SGFLGLAISFTSMWFLHQTGATTYS 174
             V+  + F E D+ +       P    F ++M +  SG   + IS+TS W +  T +TTYS
Sbjct:   210 VICTL-FTE-DWSAENIAQNFPPDAKFGVLMAMAISGVSSVGISYTSAWCVRVTSSTTYS 267

Query:   175 LVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
             +VG+LNK+PL++AG++ F  P +  +  +I  G ++GV +A AK  ++ Q
Sbjct:   268 MVGALNKLPLAIAGLVFFDAPITFGSVTAILLGFISGVVYAVAKSQQQRQ 317

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

CGD|CAL0002875 VRG4 [Candida albicans (taxid:5476)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 71/232 (30%), Positives = 127/232 (54%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LS 63
             +L+Y+++ + T+ KN+T ++ A GE+  F  +      ++  LM++S++     D   + 
Sbjct:   140 ALQYLSIPVYTIFKNLTIILIAYGEVIWFGGKVTTMALSSFLLMVLSSVIAYYGDNAAVK 199

Query:    64 FHA------VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLP 117
              H       +GY W + NCF +A++ L +R      K++ K  N  +F  +  NN LS+P
Sbjct:   200 SHDDAFALYLGYFWMLTNCFASAAFVLIMR------KRI-KLTNFKDFDTMYYNNLLSIP 252

Query:   118 LGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT-----LSGFLGLAISFTSMWFLHQTGATT 172
               +LL+  F   D+ S    L  P+   V T     LSG   + IS+ S W +  T +TT
Sbjct:   253 --ILLICSFIFEDWSSANVSLNFPADNRVTTITAMILSGASSVGISYCSAWCVRVTSSTT 310

Query:   173 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
             YS+VG+LNK+P++++G++ F+   +  + +SIF G  AG+ +A AK  ++ +
Sbjct:   311 YSMVGALNKLPIALSGLIFFEAAVNFWSVSSIFVGFGAGLVYAVAKQKQQKE 362

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0015784 "GDP-mannose transport" evidence=IGI

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IGI

GO:0030448 "hyphal growth" evidence=IMP

GO:0006486 "protein glycosylation" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=IEA

UNIPROTKB|Q5A477 VRG4 "GDP-mannose transporter" [Candida albicans SC5314 (taxid:237561)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 71/232 (30%), Positives = 127/232 (54%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LS 63
             +L+Y+++ + T+ KN+T ++ A GE+  F  +      ++  LM++S++     D   + 
Sbjct:   140 ALQYLSIPVYTIFKNLTIILIAYGEVIWFGGKVTTMALSSFLLMVLSSVIAYYGDNAAVK 199

Query:    64 FHA------VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLP 117
              H       +GY W + NCF +A++ L +R      K++ K  N  +F  +  NN LS+P
Sbjct:   200 SHDDAFALYLGYFWMLTNCFASAAFVLIMR------KRI-KLTNFKDFDTMYYNNLLSIP 252

Query:   118 LGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT-----LSGFLGLAISFTSMWFLHQTGATT 172
               +LL+  F   D+ S    L  P+   V T     LSG   + IS+ S W +  T +TT
Sbjct:   253 --ILLICSFIFEDWSSANVSLNFPADNRVTTITAMILSGASSVGISYCSAWCVRVTSSTT 310

Query:   173 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
             YS+VG+LNK+P++++G++ F+   +  + +SIF G  AG+ +A AK  ++ +
Sbjct:   311 YSMVGALNKLPIALSGLIFFEAAVNFWSVSSIFVGFGAGLVYAVAKQKQQKE 362

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IGI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=IMP

GO:0015784 "GDP-mannose transport" evidence=IGI

GO:0030448 "hyphal growth" evidence=IMP

ASPGD|ASPL0000072017 gmtA [Emericella nidulans (taxid:162425)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 72/238 (30%), Positives = 124/238 (52%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
             +L+++++ + T+ KN+T ++ A GE+  F     N    +  LM+ S+I     D+  HA
Sbjct:   127 ALQFLSIPVYTIFKNLTIILIAYGEVLWFGGSVTNLTLFSFGLMVFSSIIAAWADIK-HA 185

Query:    67 V---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN 111
             +               GY W +INC  T+SY L +R      K++ K  N  +F  +  N
Sbjct:   186 IESSGDATSKVSTLNAGYIWMLINCLCTSSYVLGMR------KRI-KLTNFKDFDTMFYN 238

Query:   112 NSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFLH 166
             N LS+P  VL+V      D+         PS         M LSG   + IS+TS W + 
Sbjct:   239 NLLSIP--VLIVCSGILEDWSPANVARNFPSADRNGIMFAMILSGLSTVFISYTSAWCVR 296

Query:   167 QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
              T +TTYS+VG+LNK+P++++G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct:   297 VTSSTTYSMVGALNKLPIALSGLIFFDAPVTFPSVSAIMVGFVSGIVYAVAKIKQNAK 354

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015784 "GDP-mannose transport" evidence=IEA

GO:0051278 "fungal-type cell wall polysaccharide biosynthetic process" evidence=IEA

SGD|S000000841 HVG1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 71/235 (30%), Positives = 124/235 (52%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAI----------- 55
             SL+Y+ V + T+ KN+T ++ A GE+  F  +  +    +  +M++S++           
Sbjct:     8 SLQYLAVPIYTIFKNLTIILIAYGEVLFFGGKVTSMELTSFIMMVLSSVVATWGDQQAIA 67

Query:    56 --SGGITDLSFHAV---------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNE 104
               +  + DL    V         GY W   NC  +A + L +R+ +    ++T   N  +
Sbjct:    68 IKASSLEDLDQELVESTIFVLNPGYLWMFTNCISSALFVLIMRKRI----RLT---NFKD 120

Query:   105 FSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV-MTLSGFLGLAISFTSMW 163
             +  +  NN L+LPL  LLV  F   D+ ++   + L +  L  M +SG + + IS+ S W
Sbjct:   121 YDTMFYNNVLALPL--LLVFSFIMEDWSTKNLSVNLSADSLAAMVISGLMSVGISYCSGW 178

Query:   164 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218
              +  T +TTYS+VG+LNK+P+++AG++ F  P +  +  SIF G L+G+ +A AK
Sbjct:   179 CVRVTSSTTYSMVGALNKLPIALAGLVFFDAPKNFLSFFSIFLGFLSGLLYAVAK 233

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015780 "nucleotide-sugar transport" evidence=IEA

SGD|S000003193 VRG4 "Golgi GDP-mannose transporter" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 69/231 (29%), Positives = 120/231 (51%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAI----------- 55
             +L+Y+ V + T+ KN+T ++ A GE+  F     +   ++  LM++S++           
Sbjct:   105 ALQYLAVPIYTIFKNLTIILIAYGEVLFFGGSVTSMELSSFLLMVLSSVVATWGDQQAVA 164

Query:    56 --SGGITDLSFHAV-----GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV 108
               +  + + +  AV     GY W   NC  +A + L +R      K++ K  N  +F  +
Sbjct:   165 AKAASLAEGAAGAVASFNPGYFWMFTNCITSALFVLIMR------KRI-KLTNFKDFDTM 217

Query:   109 LLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV-MTLSGFLGLAISFTSMWFLHQ 167
               NN L+LP  +LL+  F   D+ S        +  L  M +SG   + IS+ S W +  
Sbjct:   218 FYNNVLALP--ILLLFSFCVEDWSSVNLTNNFSNDSLTAMIISGVASVGISYCSGWCVRV 275

Query:   168 TGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218
             T +TTYS+VG+LNK+P++++G++ F  P +  +  SIF G L+G+ +A AK
Sbjct:   276 TSSTTYSMVGALNKLPIALSGLIFFDAPRNFLSILSIFIGFLSGIIYAVAK 326

GO:0005739 "mitochondrion" evidence=IDA

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IMP;IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0015784 "GDP-mannose transport" evidence=IMP

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

DICTYBASE|DDB_G0278631 DDB_G0278631 "DUF250 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 4.0e-21, P = 4.0e-21
 Identities = 58/214 (27%), Positives = 112/214 (52%)

Query:     7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
             SLK +N+ M + LK +  V+  V E ++  K    ++ A++ +M+I A+  GITDLSF++
Sbjct:   175 SLKQLNIPMYSALKRLVAVVILVMEYFILKKVSPPKIIASVVVMVIGAVVAGITDLSFNS 234

Query:    67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 126
             +GY+  +++C   ASY + +++V         + N++ + M+  N+ LSLP+ + L+IV 
Sbjct:   235 LGYSLVLLSCIFQASYLIYVKKV---------ASNMSTYDMLYYNSVLSLPITIFLMIVN 285

Query:   127 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 186
              E++Y      L   SF     LS FLG  ++F   +        T S+ G +  I  ++
Sbjct:   286 QEIEYFQTFEHLYDSSFQAYFILSIFLGFFLNFCIFFCTSVNSPLTTSVTGQVKNIASTI 345

Query:   187 AGILLFK-VPTSLENSASIFFGLLAGVFFARAKM 219
              G ++F  +     N   +   ++  ++++  K+
Sbjct:   346 IGAMVFNDIIIHPINILGLIINIIGSIWYSFLKL 379

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0277007 DDB_G0277007 "GDP-fucose transporter" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 47/214 (21%), Positives = 105/214 (49%)

Query:     1 MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 60
             +F  +C L+Y+ V+   V +++T   + +    +   +   R   A  ++ +  + G   
Sbjct:   153 IFNNLC-LEYVEVSFYQVARSLTICFSLILTYIVLKSKTSYRATMACLVVFLGFVLGSAG 211

Query:    61 DLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGV 120
             +++F  +G  + +++ F  A YS+ ++RV+         GN  E+ + + N ++S+ L  
Sbjct:   212 EVNFSWLGIIFGLLSSFFVALYSIAVKRVLPAV-----DGN--EWRLSIYNTAISIGLIF 264

Query:   121 LLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLN 180
              L++V  E + +   PLL   +FW  MT++G +G  IS +    +  T   T ++ G++ 
Sbjct:   265 PLILVSGEANTILDEPLLYSGTFWFYMTVAGLMGYLISISVFMQIKHTSPLTNTISGTVK 324

Query:   181 KIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 214
                 ++  ++ +  P S +N+  I   ++ G F+
Sbjct:   325 ACVQTILAVVFWGNPISTQNAVGILL-VIGGSFW 357

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q941R4	GONS1_ARATH	No assigned EC number	0.8801	0.9601	0.6516	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.2448.1 hypothetical protein (336 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
COG5070	309	COG5070, VRG4, Nucleotide-sugar transporter [Carbo	2e-28
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	0.003

>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  108 bits (272), Expect = 2e-28
 Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 15/225 (6%)

Query: 7   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 66
           SL+Y+ V + T+ KN+T ++ A GE+  F  R  +    +  LM++S++     D    A
Sbjct: 88  SLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA 147

Query: 67  -------VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLG 119
                   GY W   NC  +A++ L +R+ +          N  +F  +  NN LSLP+ 
Sbjct: 148 FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT-------NFKDFDTMFYNNLLSLPIL 200

Query: 120 VLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSL 179
           +    +F +    +    L      + M +SG   + IS+ S W +  T +TTYS+VG+L
Sbjct: 201 LSFSFLFEDWSPGNLANNLS-VDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGAL 259

Query: 180 NKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224
           NK+P+++AG++ F  P +  +  SI  G L+G  +A AK  ++  
Sbjct: 260 NKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQN 304

Length = 309

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 35/227 (15%)

Query: 11  INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAV--- 67
           ++V +  + K    V+ A+G +    K+       +  LM + ++   + D  + ++   
Sbjct: 2   LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLL 61

Query: 68  -------------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV 108
                              G     ++  L+A  S     V            L +   +
Sbjct: 62  KLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSGFAGVY-------FEKILKDGDTM 114

Query: 109 LLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL----VMTLSGFLGLAISFTSMWF 164
             + +L LPL    +     V   S   L+    F++     + + G L +         
Sbjct: 115 FWSRNLQLPL--FGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGV 172

Query: 165 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 211
           +     TT S V +L+ I  ++A + LF    S           LA 
Sbjct: 173 VRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLAT 219

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.97
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.97
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.96
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.95
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.92
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.92
PRK11272	292	putative DMT superfamily transporter inner membran	99.91
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.91
KOG1580	337	consensus UDP-galactose transporter related protei	99.9
PLN00411	358	nodulin MtN21 family protein; Provisional	99.9
PRK11689	295	aromatic amino acid exporter; Provisional	99.89
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.89
PRK15430	296	putative chloramphenical resistance permease RarD;	99.88
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.87
KOG1581	327	consensus UDP-galactose transporter related protei	99.85
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.83
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.83
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.82
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.82
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.8
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.78
KOG1582	367	consensus UDP-galactose transporter related protei	99.77
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.7
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.7
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.69
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.67
KOG2765	416	consensus Predicted membrane protein [Function unk	99.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.64
COG2962	293	RarD Predicted permeases [General function predict	99.62
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.6
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.53
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.38
COG2510	140	Predicted membrane protein [Function unknown]	99.22
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.18
KOG2766	336	consensus Predicted membrane protein [Function unk	98.99
PRK15430	296	putative chloramphenical resistance permease RarD;	98.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.94
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.93
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.89
PLN00411	358	nodulin MtN21 family protein; Provisional	98.71
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.67
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.58
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.49
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.4
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.3
COG2962	293	RarD Predicted permeases [General function predict	98.29
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.26
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.25
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.21
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.2
PRK11272	292	putative DMT superfamily transporter inner membran	98.19
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.12
PRK11689	295	aromatic amino acid exporter; Provisional	98.1
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.02
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.97
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.79
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.78
COG2510	140	Predicted membrane protein [Function unknown]	97.7
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.68
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.67
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.65
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.61
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.57
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.52
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.45
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.33
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.24
COG2076	106	EmrE Membrane transporters of cations and cationic	97.21
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.2
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.04
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.0
PRK11431	105	multidrug efflux system protein; Provisional	97.0
PRK13499	345	rhamnose-proton symporter; Provisional	96.94
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.91
PRK11431	105	multidrug efflux system protein; Provisional	96.9
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.89
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.85
PRK13499	345	rhamnose-proton symporter; Provisional	96.81
COG2076	106	EmrE Membrane transporters of cations and cationic	96.63
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.62
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.61
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.5
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.16
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.14
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.12
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.77
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.75
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.05
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.03
KOG2765	416	consensus Predicted membrane protein [Function unk	93.2
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	91.0
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	90.67
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	89.34
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	86.8
KOG1581	327	consensus UDP-galactose transporter related protei	86.57
KOG3912	372	consensus Predicted integral membrane protein [Gen	81.72
PRK02237	109	hypothetical protein; Provisional	81.41

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.5e-31  Score=217.17  Aligned_cols=216  Identities=38%  Similarity=0.640  Sum_probs=198.0

Q ss_pred             CccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHH
Q 027256            1 MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTA   80 (226)
Q Consensus         1 ~~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a   80 (226)
                      +++++.+++|+|+|+++++|+..|+++++.+..++|.|++++.+.++..+.+|......+|.++|..|+.|++.+++..+
T Consensus        91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a  170 (314)
T KOG1444|consen   91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTA  170 (314)
T ss_pred             HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhh-hcCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256           81 SYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISF  159 (226)
Q Consensus        81 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (226)
                      .+.+..|+..+       +.+.+.+++++|+|+.+.|++....+++||++.. .+.+++.++..|..+.++|++|+.++|
T Consensus       171 ~~~v~~kk~vd-------~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy  243 (314)
T KOG1444|consen  171 AFVVYVKKSVD-------SANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISY  243 (314)
T ss_pred             HHHHHHHHhhc-------cccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence            99999999876       3567999999999999999999999999997622 245556677889999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhc
Q 027256          160 TSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS  223 (226)
Q Consensus       160 ~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~  223 (226)
                      +.+.|.+.+|+++.++++..++..+.+.+++++|++.++...+|+.+.+.|++.|++.+.|||+
T Consensus       244 ~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~  307 (314)
T KOG1444|consen  244 TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK  307 (314)
T ss_pred             HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence            9999999999999999997777777777777789999999999999999999999999966655

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=1.9e-29  Score=213.56  Aligned_cols=215  Identities=14%  Similarity=0.197  Sum_probs=177.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHH
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASY   82 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~   82 (226)
                      +++.|++|++++++++++++.|+++++++.+++|||++++++.++.++++|+.+...+|.+++..|+.+++++++++|.|
T Consensus        81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~  160 (302)
T TIGR00817        81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSR  160 (302)
T ss_pred             HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999887777788888999999999999999


Q ss_pred             HHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhh-cCCC----CcchhHHHHHHHHHH-HHHH
Q 027256           83 SLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPL----LRLPSFWLVMTLSGF-LGLA  156 (226)
Q Consensus        83 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~~-~~~~  156 (226)
                      .+..||..++       ++.|++++..|++..+.+...|.....|+.+... +...    ......+......+. +...
T Consensus       161 ~v~~k~~~~~-------~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (302)
T TIGR00817       161 NIFSKKAMTI-------KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHF  233 (302)
T ss_pred             HHHHHHhhcc-------CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence            9999997642       3578999999999999989898887766432111 0000    111122322333333 3334


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhcc
Q 027256          157 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ  224 (226)
Q Consensus       157 ~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~~  224 (226)
                      .+...+.+++++||++.++.+++||++++++|++++||++|..+++|.++++.|.++|++.|+||+|+
T Consensus       234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            45556678999999999999999999999999999999999999999999999999999888777765

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.97  E-value=1.8e-28  Score=211.26  Aligned_cols=213  Identities=14%  Similarity=0.213  Sum_probs=179.5

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH
Q 027256            4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYS   83 (226)
Q Consensus         4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~   83 (226)
                      .+.|+++.++++++++|++.|+++++++++++|||++++++.+++++++|+.+++.+|.++++.|++++++|++++|.|.
T Consensus       131 ~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~  210 (350)
T PTZ00343        131 AVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRS  210 (350)
T ss_pred             HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchh--hhh-c----CCCCcchhHHHHHHHHHHHHHH
Q 027256           84 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVD--YLS-R----TPLLRLPSFWLVMTLSGFLGLA  156 (226)
Q Consensus        84 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~~~~~l~~~~~~~~~  156 (226)
                      +..|+..++.++  ++++.++.++..+..+.+.++.+|.....|+..  ..+ +    .+.+.....+..++.++++.+.
T Consensus       211 i~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l  288 (350)
T PTZ00343        211 IFAKKTMKNKSE--IGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYL  288 (350)
T ss_pred             HHHHHHhccccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHH
Confidence            999998775321  112466777777778889988888877554321  111 1    1111112234456677888889


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256          157 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  218 (226)
Q Consensus       157 ~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~  218 (226)
                      .|.+.|.++++++|.++++.+++||++++++|++++||++|+.+++|.++++.|+++|++.|
T Consensus       289 ~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        289 YNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999998764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.96  E-value=3e-28  Score=206.30  Aligned_cols=213  Identities=19%  Similarity=0.255  Sum_probs=185.8

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc----ccc------hHHHHH
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL----SFH------AVGYAW   71 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~----~~~------~~G~~~   71 (226)
                      .+++.|++|+|+|+++++|++.|+++++++.+++|||++++++.+++++++|+++...+|.    +.+      ..|+.+
T Consensus        79 ~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~l  158 (303)
T PF08449_consen   79 VLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIIL  158 (303)
T ss_pred             HHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHH
Confidence            4678999999999999999999999999999999999999999999999999998865442    111      239999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHH--hcchhhhhcCCCCcchhHHHHHHH
Q 027256           72 QIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV--FNEVDYLSRTPLLRLPSFWLVMTL  149 (226)
Q Consensus        72 ~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~  149 (226)
                      .++|.++.|.+.++.||..+++       +.+++++++|+|+.+.|...+....  .+|..+..++.. .+|..+..++.
T Consensus       159 l~~sl~~~a~~~~~qe~~~~~~-------~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~  230 (303)
T PF08449_consen  159 LLLSLLLDAFTGVYQEKLFKKY-------GKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLL  230 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHH
Confidence            9999999999999999998753       5688999999999999999999888  667654433321 23456777778


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhh
Q 027256          150 SGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER  222 (226)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~  222 (226)
                      .++++...+...+.++++.||++.+++.++|+++++++++++||+++++.+|+|+++++.|..+|++.|+|||
T Consensus       231 ~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  231 FSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            8888888888888889999999999999999999999999999999999999999999999999999888775

; GO: 0055085 transmembrane transport

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.95  E-value=6.9e-28  Score=201.98  Aligned_cols=216  Identities=19%  Similarity=0.341  Sum_probs=187.5

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHH
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTAS   81 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~   81 (226)
                      ++++.|++++|+++.|++|.+.|+++.+++.++.+|+.++..+.+++.+..||.+++.+|.++|+.|...++.+.+..+.
T Consensus        98 v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al  177 (316)
T KOG1441|consen   98 VLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFAL  177 (316)
T ss_pred             HhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHH-HHHHHhcchhhhh-cCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256           82 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGV-LLVIVFNEVDYLS-RTPLLRLPSFWLVMTLSGFLGLAISF  159 (226)
Q Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (226)
                      ++++.|+.+++     |+++.|+.+.+.|++.++...++ |.....+...... ....+ +..++..+.. .++++.+|.
T Consensus       178 ~~I~~~~ll~~-----~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-sv~~f~~Nl  250 (316)
T KOG1441|consen  178 RNILSKKLLTS-----KGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW-FVTFLILLLN-SVLAFLLNL  250 (316)
T ss_pred             HHHHHHHhhhc-----cccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc-chhhHHHHHH-HHHHHHHHH
Confidence            99999999864     24678999999999998888888 6554432221100 11111 2223434434 499999999


Q ss_pred             HHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhcc
Q 027256          160 TSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ  224 (226)
Q Consensus       160 ~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~~  224 (226)
                      +.|.++.++||++.++.+..|.++.+..|+++|+|+.|+.+..|+++.+.|+.+|++.|.|++++
T Consensus       251 s~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  251 SAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             HHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999988775

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.92  E-value=2.1e-23  Score=176.40  Aligned_cols=208  Identities=10%  Similarity=0.091  Sum_probs=160.2

Q ss_pred             cccccc-cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchHHHHHHHHHHHHHH
Q 027256            5 ICSLKY-INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTA   80 (226)
Q Consensus         5 ~~al~~-i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~~~~a   80 (226)
                      +.+++| .|.+.+.++.++.|+++.+++++++|||++++++++++++++|+.+...++   .+.+..|+.+++.+++++|
T Consensus        77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a  156 (299)
T PRK11453         77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWA  156 (299)
T ss_pred             HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence            346666 689999999999999999999999999999999999999999999776432   2345679999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhh-cCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256           81 SYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPLLRLPSFWLVMTLSGFLGLAISF  159 (226)
Q Consensus        81 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (226)
                      .|.+..|+..++.      ...+......+....+...........++..... ...+ .++..|..+++.++++..++|
T Consensus       157 ~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~i~~t~~~~  229 (299)
T PRK11453        157 CGNIFNKKIMSHS------TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVT-IDMTTILSLMYLAFVATIVGY  229 (299)
T ss_pred             HHHHHHHHHhccc------CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcc-CCHHHHHHHHHHHHHHHHHHH
Confidence            9999999975421      1122334444544444443333333333322110 1111 234568888899999999998


Q ss_pred             HHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhh
Q 027256          160 TSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  219 (226)
Q Consensus       160 ~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~  219 (226)
                      ..+ ..+|+.+|.+.+.+..++|+++.++|++++||+++..+++|.++++.|+++..+.++
T Consensus       230 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        230 GIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            887 578999999999999999999999999999999999999999999998887655544

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.92  E-value=4.5e-25  Score=172.74  Aligned_cols=214  Identities=30%  Similarity=0.554  Sum_probs=188.2

Q ss_pred             CccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchHHHHHH
Q 027256            1 MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQ   72 (226)
Q Consensus         1 ~~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--------~~~~~G~~~~   72 (226)
                      +|++..|++|+|+|.++++|+++.+.++.++..++|.|.+-.+..+..++++......++|.        .+| .|++|.
T Consensus        82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm  160 (309)
T COG5070          82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWM  160 (309)
T ss_pred             HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEE
Confidence            48899999999999999999999999999999999999999999999999999999999887        355 899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHH
Q 027256           73 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF  152 (226)
Q Consensus        73 l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  152 (226)
                      ..+++..|.+-..+|+..+-       .+....+-++|+|+.+.|+++.+++.+|||.+.- ..+...+....++.++|+
T Consensus       161 ~~NclssaafVL~mrkri~l-------tNf~d~dtmfYnNllslPiL~~~s~~~edws~~n-~annl~~d~l~am~ISgl  232 (309)
T COG5070         161 FTNCLSSAAFVLIMRKRIKL-------TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGN-LANNLSVDSLMAMFISGL  232 (309)
T ss_pred             ehhhHhHHHHHHHHHHhhcc-------cccchhhHHHHhhhHHHHHHHHHHHHhccCCcch-hhcCCChHHHHHHHHHHH
Confidence            99999999999888886652       3456788999999999999999999999886431 111112233557889999


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhc
Q 027256          153 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS  223 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~  223 (226)
                      +++.++|+.-+|+|.++.++.++++.+++....+.|.++|||+.+......+.+-+.++.+|..+|.+|+|
T Consensus       233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q  303 (309)
T COG5070         233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ  303 (309)
T ss_pred             HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999988765433

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.91  E-value=1.1e-22  Score=171.50  Aligned_cols=200  Identities=13%  Similarity=0.016  Sum_probs=161.0

Q ss_pred             cccc-cccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-ccccchHHHHHHHHHHHHHHHH
Q 027256            5 ICSL-KYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTASY   82 (226)
Q Consensus         5 ~~al-~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~   82 (226)
                      +.+. +++|.+.+.++.++.|+++++++.+ +|||++++++.+++++++|+.+...+ +.+.+..|+.+++++++++|.|
T Consensus        87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~  165 (292)
T PRK11272         87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFG  165 (292)
T ss_pred             HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHH
Confidence            3455 8999999999999999999999986 69999999999999999999887543 4456678999999999999999


Q ss_pred             HHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 027256           83 SLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM  162 (226)
Q Consensus        83 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (226)
                      .+..||..++          ++.....+....+.+...+.....++...  ..   .++..|..+++.++.+..+.+..+
T Consensus       166 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~i~~l~i~~s~~~~~l~  230 (292)
T PRK11272        166 SVWSSRLPLP----------VGMMAGAAEMLAAGVVLLIASLLSGERLT--AL---PTLSGFLALGYLAVFGSIIAISAY  230 (292)
T ss_pred             HHHHHhcCCC----------cchHHHHHHHHHHHHHHHHHHHHcCCccc--cc---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999886421          23334456656666666666554433211  11   133457788888888887877766


Q ss_pred             -HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          163 -WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       163 -~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                       .++|+.++.+.++..+++|+++.+++++++||++|+.+++|.++++.|+++.+++++|
T Consensus       231 ~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        231 MYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence             6899999999999999999999999999999999999999999999998888776554

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.91  E-value=1.8e-22  Score=166.99  Aligned_cols=195  Identities=14%  Similarity=0.093  Sum_probs=159.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-ccccchHHHHHHHHHHHHHHH
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTAS   81 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~   81 (226)
                      +.+.|++|+|.+.+.++.++.|+++++++.+++|||++++++.++.++++|+.+...+ +.+.+..|+.++++++++++.
T Consensus        63 ~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~  142 (260)
T TIGR00950        63 LYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFAL  142 (260)
T ss_pred             HHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999887543 345667899999999999999


Q ss_pred             HHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 027256           82 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS  161 (226)
Q Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  161 (226)
                      +.+..|+..++.       +.++.....+....+.+...+.....++...       .++..|..+++.++++....+..
T Consensus       143 ~~~~~k~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  208 (260)
T TIGR00950       143 GTVLYKRLVKKE-------GPELLQFTGWVLLLGALLLLPFAWFLGPNPQ-------ALSLQWGALLYLGLIGTALAYFL  208 (260)
T ss_pred             HHHHHhHHhhcC-------CchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHHHHHHHHH
Confidence            999999986531       1223344445567777777777665443211       12344666777888887777776


Q ss_pred             H-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 027256          162 M-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG  211 (226)
Q Consensus       162 ~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~  211 (226)
                      + .++|+.++.+.+.+.+++|+++.+++++++||+++..+++|.++++.|.
T Consensus       209 ~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       209 WNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            5 6899999999999999999999999999999999999999999998775

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.3e-23  Score=165.79  Aligned_cols=204  Identities=14%  Similarity=0.069  Sum_probs=176.6

Q ss_pred             CccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-------ccchHHHHHHH
Q 027256            1 MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-------SFHAVGYAWQI   73 (226)
Q Consensus         1 ~~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~-------~~~~~G~~~~l   73 (226)
                      |.++|.|++++|.|+..+-+++.|+.+++++.++.|++.+|+++..+++++.|+++..+.+.       ....+|-++.+
T Consensus        99 MVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~  178 (337)
T KOG1580|consen   99 MVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLI  178 (337)
T ss_pred             HHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999998865431       22248999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHH
Q 027256           74 INCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFL  153 (226)
Q Consensus        74 ~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  153 (226)
                      +|-...+......+++...       .+-+.-.|++|+|+.+...+....+++||..+.+.+.. +.|..|..+...+++
T Consensus       179 lSL~mDGlTg~~Qdrira~-------yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~-RhP~~~~~l~l~ai~  250 (337)
T KOG1580|consen  179 LSLAMDGLTGSIQDRIRAS-------YQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQ-RHPYVFWDLTLLAIA  250 (337)
T ss_pred             HHHHhcccchhHHHHHHHh-------hccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence            9999999888888887653       23466789999999999998888889998765544432 346667788888999


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 027256          154 GLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGV  212 (226)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~  212 (226)
                      +.+.+.+.|..+...+|+++|++.+.|+.+++++++++|+++++.+||+|.++.+.+..
T Consensus       251 s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~  309 (337)
T KOG1580|consen  251 SCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALT  309 (337)
T ss_pred             HHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999887644

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.90  E-value=1e-21  Score=169.30  Aligned_cols=206  Identities=13%  Similarity=0.118  Sum_probs=154.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHH------hCcccChhHHHHHHHHHHhhhhhcc-ccc-------------
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYL------FNKRHDNRVWAALFLMIISAISGGI-TDL-------------   62 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~------~~~~~~~~~~~al~l~~~Gv~l~~~-~~~-------------   62 (226)
                      +.+.+++|++.+.+.++.++.|+++++++.++      +|||++++++++++++++|+.+... ++.             
T Consensus        94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~  173 (358)
T PLN00411         94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF  173 (358)
T ss_pred             HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence            35678999999999999999999999999999      6999999999999999999987642 111             


Q ss_pred             ----------ccc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCc-hhHHHHHHHHHHHHHHHHHHHhcch-
Q 027256           63 ----------SFH-AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNE-FSMVLLNNSLSLPLGVLLVIVFNEV-  129 (226)
Q Consensus        63 ----------~~~-~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  129 (226)
                                +.+ ..|+.+++.+++++|.|.+..|+..+++         ++ ....++....+.....+.....++. 
T Consensus       174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~---------~~~~~~t~~~~~~~~~~~~~~~l~~~~~~  244 (358)
T PLN00411        174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY---------PAAFTVSFLYTVCVSIVTSMIGLVVEKNN  244 (358)
T ss_pred             cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CcHhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence                      112 4599999999999999999999986643         23 2334444443333333333333321 


Q ss_pred             hhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 027256          130 DYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGL  208 (226)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii  208 (226)
                      ...+. .. .+...+ .+++.+++. .+.|..| .++|+.+|.+++++.+++|++++++|++++||++++.+++|.++++
T Consensus       245 ~~~~~-~~-~~~~~~-~i~y~~i~t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl  320 (358)
T PLN00411        245 PSVWI-IH-FDITLI-TIVTMAIIT-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILIT  320 (358)
T ss_pred             cccce-ec-cchHHH-HHHHHHHHH-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            11111 11 122223 355666654 3566665 6899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhh
Q 027256          209 LAGVFFARAKMWE  221 (226)
Q Consensus       209 ~g~~~~~~~~~~~  221 (226)
                      .|+++.++.|+||
T Consensus       321 ~Gv~l~~~~~~~~  333 (358)
T PLN00411        321 LGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHhhhhhh
Confidence            9999888776654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.89  E-value=1.7e-21  Score=164.47  Aligned_cols=195  Identities=11%  Similarity=0.070  Sum_probs=146.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-----------ccchHHHHHHHHHHH
Q 027256            9 KYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-----------SFHAVGYAWQIINCF   77 (226)
Q Consensus         9 ~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~-----------~~~~~G~~~~l~s~~   77 (226)
                      ++.+...+.++.++.|+++++++++++|||++++++.+++++++|+.+...+|.           +.+..|+.+++.+++
T Consensus        87 ~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~  166 (295)
T PRK11689         87 TRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAF  166 (295)
T ss_pred             ccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHH
Confidence            456777888999999999999999999999999999999999999988765432           123469999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHH
Q 027256           78 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI  157 (226)
Q Consensus        78 ~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  157 (226)
                      ++|.|.+..||..++         .++....+   ..+.....+.....++..    . + .++..|..+++.++ +..+
T Consensus       167 ~~A~~~v~~k~~~~~---------~~~~~~~~---~~~~~~l~~~~~~~~~~~----~-~-~~~~~~~~l~~~~~-~t~~  227 (295)
T PRK11689        167 IWAAYCNVTRKYARG---------KNGITLFF---ILTALALWIKYFLSPQPA----M-V-FSLPAIIKLLLAAA-AMGF  227 (295)
T ss_pred             HHHHHHHHHhhccCC---------CCchhHHH---HHHHHHHHHHHHHhcCcc----c-c-CCHHHHHHHHHHHH-HHHH
Confidence            999999999997532         34444322   122222222222222211    1 1 12344666667675 4555


Q ss_pred             HHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhh
Q 027256          158 SFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER  222 (226)
Q Consensus       158 ~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~  222 (226)
                      .|..+ .++|+.+|.+.+...+++|++++++|++++||+++..+++|.++++.|++.....+++++
T Consensus       228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~~  293 (295)
T PRK11689        228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRKR  293 (295)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHhc
Confidence            66655 689999999999999999999999999999999999999999999998877655554433

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.9e-24  Score=173.80  Aligned_cols=213  Identities=21%  Similarity=0.268  Sum_probs=195.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchHHHHHHHHHHHHH
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLT   79 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~~~~   79 (226)
                      +++++++|.+++++++-|++.-+|+.++.++++|+|-+..-..++.+++.|-.+-...|   ..+++.|.+++..|+++-
T Consensus       118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~v  197 (347)
T KOG1442|consen  118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAV  197 (347)
T ss_pred             ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999988877655   467899999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256           80 ASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISF  159 (226)
Q Consensus        80 a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (226)
                      |...+..||..++++       -.-|.+.+|+|..++.+++|...+.||.+..+.+|+.....+|..+.++|++|+.++|
T Consensus       198 Alnaiytkk~l~~v~-------~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy  270 (347)
T KOG1442|consen  198 ALNAIYTKKVLPPVG-------DCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY  270 (347)
T ss_pred             HHHHHhhheeccccc-------CeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh
Confidence            999999998876532       2468999999999999999999999999998888877677899999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhh
Q 027256          160 TSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER  222 (226)
Q Consensus       160 ~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~  222 (226)
                      ....-+|.+||+++.+-++.|....+++++.+++|.-+..-|-|-.+++.|...|++.|.++.
T Consensus       271 vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em  333 (347)
T KOG1442|consen  271 VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEM  333 (347)
T ss_pred             eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHH
Confidence            988889999999999999999999999999999999999999999999999999998876543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.88  E-value=1e-20  Score=159.73  Aligned_cols=199  Identities=11%  Similarity=0.071  Sum_probs=140.7

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHH
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTAS   81 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~   81 (226)
                      .+.+.+++++|++.+.++.++.|+++++++++++|||++++++.+++++++|+.++..++.+.+    .++++++++||.
T Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~  163 (296)
T PRK15430         88 LLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAF  163 (296)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999998764332222    468889999999


Q ss_pred             HHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 027256           82 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS  161 (226)
Q Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  161 (226)
                      |.+..|+..++       ...+......+....+.+...+.   .++.......+   ....+..+...++.+....++.
T Consensus       164 ~~i~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~g~~t~i~~~~~  230 (296)
T PRK15430        164 YGLVRKKIAVE-------AQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQN---PMSLNLLLIAAGIVTTVPLLCF  230 (296)
T ss_pred             HHHHHHhcCCC-------CchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCC---cHHHHHHHHHHHHHHHHHHHHH
Confidence            99998886431       11122222233322232221111   11111101111   1112333444455444434444


Q ss_pred             HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256          162 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       162 ~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~  217 (226)
                      ..++|+.+|.+.+.+.+++|+++.++|++++||++++.+++|+++++.+..+...+
T Consensus       231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999998776665443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.87  E-value=4e-20  Score=155.93  Aligned_cols=196  Identities=13%  Similarity=0.043  Sum_probs=150.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc--c-cccchHHHHHHHHHHHHH
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT--D-LSFHAVGYAWQIINCFLT   79 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~--~-~~~~~~G~~~~l~s~~~~   79 (226)
                      +.+++++|+|.+.+.++..+.|+++++++    +|++++.  ..+.++++|+.++...  | .+.+..|+.+++++++++
T Consensus        87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~  160 (293)
T PRK10532         87 LFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACW  160 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHH
Confidence            45678999999999999999999999887    3665544  4566778999876432  2 234568999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256           80 ASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISF  159 (226)
Q Consensus        80 a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (226)
                      |.|.+..|+..++         .++... .+..+.+.....+.....+. .     .. .++..|..+++.++++..++|
T Consensus       161 a~~~v~~r~~~~~---------~~~~~~-~~~~~~~~~~l~~~~~~~~~-~-----~~-~~~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        161 AIYILSGQRAGAE---------HGPATV-AIGSLIAALIFVPIGALQAG-E-----AL-WHWSILPLGLAVAILSTALPY  223 (293)
T ss_pred             HHHHHHHHHHhcc---------CCchHH-HHHHHHHHHHHHHHHHHccC-c-----cc-CCHHHHHHHHHHHHHHHHHHH
Confidence            9999999997542         345544 34445555555555443221 0     01 133446566788899988888


Q ss_pred             HHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256          160 TSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE  221 (226)
Q Consensus       160 ~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~  221 (226)
                      ..+ ..+++.+|.++++..+++|++++++|++++||+++..+++|.++++.|++.+.+..+|+
T Consensus       224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~  286 (293)
T PRK10532        224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE  286 (293)
T ss_pred             HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            775 68999999999999999999999999999999999999999999999988887665554

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.85  E-value=3.9e-20  Score=151.14  Aligned_cols=211  Identities=12%  Similarity=0.082  Sum_probs=178.2

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc---c------cccchHHHHHH
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT---D------LSFHAVGYAWQ   72 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~---~------~~~~~~G~~~~   72 (226)
                      +|+.+||+|++.|+.++.|++.-+.+++++.+++|+|+++.+++...++..|+.+....   |      .+..++|+.+.
T Consensus        98 ~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll  177 (327)
T KOG1581|consen   98 WCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLL  177 (327)
T ss_pred             HHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHH
Confidence            47889999999999999999999999999999999999999999999999999876432   2      12457999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHH
Q 027256           73 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF  152 (226)
Q Consensus        73 l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  152 (226)
                      ..+-++.++.+...+++.++       .++++++++++.|+.+++......+..|.+.+..++-. .+|..+.-+.+-+.
T Consensus       178 ~~~L~fDgfTn~tQd~lf~~-------~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~-~hp~~~~Di~l~s~  249 (327)
T KOG1581|consen  178 FGYLLFDGFTNATQDSLFKK-------YKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIK-EHPDVAFDILLYST  249 (327)
T ss_pred             HHHHHHHhhHHhHHHHHhcc-------CCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-cChhHHHHHHHHHH
Confidence            99999999999999999875       46899999999999999998888665555433222211 24566777778889


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          153 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                      +|.+.+...+..+++.+|.+.+.+.+.|++++++++.+.||++++..||.|+.+.+.|..+=.+.|+|
T Consensus       250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999987655443444444

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.83  E-value=8.8e-20  Score=149.09  Aligned_cols=209  Identities=14%  Similarity=0.170  Sum_probs=178.0

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH
Q 027256            4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYS   83 (226)
Q Consensus         4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~   83 (226)
                      +|.|++|++++.+++.|+..++|+.+++.++.-||++|.....+.++..|+.+...++.++|..|+++++.++++.++..
T Consensus       101 SN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW  180 (349)
T KOG1443|consen  101 SNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRW  180 (349)
T ss_pred             ccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhH
Confidence            68899999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhh-----hcCCCCcch-hHHHHHHHHHHHHHHH
Q 027256           84 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-----SRTPLLRLP-SFWLVMTLSGFLGLAI  157 (226)
Q Consensus        84 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~l~~~~~~~~~~  157 (226)
                      ...+++.++.+    ..+-||.+.+++..-.....++|..+..|+....     +++.+..+. .....+...|..++..
T Consensus       181 ~~tQ~ll~~~~----~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l  256 (349)
T KOG1443|consen  181 AFTQMLLRNQP----SAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLL  256 (349)
T ss_pred             HHHHHHHhcCc----cccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            99999888743    2456899999888888888888888888765322     222222121 1222344566777777


Q ss_pred             HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          158 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       158 ~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      ..+.+..+++++..+.++++..|.+.+.+++..+.+|+++...|.|..+++.|...+..
T Consensus       257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            88888889999999999999999999999999999999999999999999999888833

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.83  E-value=2.1e-19  Score=152.52  Aligned_cols=206  Identities=11%  Similarity=0.111  Sum_probs=161.2

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------ccchHHHHHH
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------SFHAVGYAWQ   72 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~---------~~~~~G~~~~   72 (226)
                      |+.+.|++|++++.++++.++..+++++++++++|+|+++.+++++.+.++|++++...|.         +....|++++
T Consensus        94 ~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~  173 (334)
T PF06027_consen   94 YLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA  173 (334)
T ss_pred             HHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH
Confidence            3557899999999999999999999999999999999999999999999999998765442         2347999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHH
Q 027256           73 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF  152 (226)
Q Consensus        73 l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  152 (226)
                      +.++.+||.+++..|+..++         .+..+.+....+++.++..+...+. |.++..+.+ | ++..+.. .....
T Consensus       174 l~~a~lya~~nV~~E~~v~~---------~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~-w-~~~~~~~-~v~~~  240 (334)
T PF06027_consen  174 LLGAILYAVSNVLEEKLVKK---------APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH-W-TSQVIGL-LVGYA  240 (334)
T ss_pred             HHHHHHHHHHHHHHHHhccc---------CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC-C-ChhhHHH-HHHHH
Confidence            99999999999999998764         3556666666677777777776655 443332322 2 2222222 22222


Q ss_pred             HHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          153 LGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                      .+....|+.. ..++..+|+..++-...-.+.++++++++||+++++..++|.++++.|.++|...+++
T Consensus       241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~  309 (334)
T PF06027_consen  241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP  309 (334)
T ss_pred             HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence            2334455544 4689999998888778889999999999999999999999999999999999766443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.82  E-value=5.7e-19  Score=148.07  Aligned_cols=199  Identities=14%  Similarity=0.172  Sum_probs=143.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc-cccchHHHHHHHHHHHHHHH
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD-LSFHAVGYAWQIINCFLTAS   81 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~   81 (226)
                      +.+.++++.|++....+.++.|+++++++++++|||++++++.++.+++.|+.+...+| .+.+..|+.++++++++++.
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~  158 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAI  158 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999876533 23456788899999999999


Q ss_pred             HHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHH-HHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 027256           82 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLS-LPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFT  160 (226)
Q Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  160 (226)
                      |.+..|+..++.+     ...+......+..... .|.... ....++. ..  .+   .+..+..+++.+.+...+.|.
T Consensus       159 ~~i~~k~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~--~~---~~~~~~~~~~~~~~~s~l~~~  226 (281)
T TIGR03340       159 YSLSDKAAALGVP-----AFYSALGYLGIGFLAMGWPFLLL-YLKRHGR-SM--FP---YARQILPSATLGGLMIGGAYA  226 (281)
T ss_pred             hhhhccccccchh-----cccccHHHHHHHHHHHHHHHHHH-HHHHhcc-ch--hh---hHHHHHHHHHHHHHHHHHHHH
Confidence            9998877533211     0111222222222221 222221 1111111 00  01   111233445555566666666


Q ss_pred             HH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 027256          161 SM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVF  213 (226)
Q Consensus       161 ~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~  213 (226)
                      .+ .++|+.++.+.+.+.+++|++++++|++++||+++..+++|.++++.|+.+
T Consensus       227 l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       227 LVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            55 689999999999999999999999999999999999999999999988764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.82  E-value=5.1e-19  Score=135.08  Aligned_cols=147  Identities=18%  Similarity=0.386  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcC---C--CC-cch
Q 027256           68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRT---P--LL-RLP  141 (226)
Q Consensus        68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~-~~~  141 (226)
                      |+.+++.|+++.|++.+..|+..++.+  .++++.+++++++|++..++++.+|..+..|+++.....   .  .. .++
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~--~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~   78 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVS--SNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDP   78 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchH
Confidence            788999999999999999999988631  123578999999999999999999999988876522111   1  11 144


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          142 SFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       142 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      ..+..++.+|++++..|++.+.+++++||++.++++++|++..+++|+++|||++|..+++|+++++.|.+.|+|
T Consensus        79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            667788899999999999999999999999999999999999999999999999999999999999999999975

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.80  E-value=1.7e-17  Score=138.45  Aligned_cols=197  Identities=18%  Similarity=0.278  Sum_probs=151.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHH-HHhCcccChhHHHHHHHHHHhhhhhccccccc---chHHHHHHHHHHHH
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEM-YLFNKRHDNRVWAALFLMIISAISGGITDLSF---HAVGYAWQIINCFL   78 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~-~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~---~~~G~~~~l~s~~~   78 (226)
                      +.+.++++++++.++++.++.|+++.+++. +++|||++++++.++.+++.|+.++..++...   +..|..+++.++++
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~  165 (292)
T COG0697          86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALL  165 (292)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHH
Confidence            456779999999999999999999999997 77799999999999999999999998765443   25899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcccCCCCchhHHH-HHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHH
Q 027256           79 TASYSLTLRRVMDTAKQVTKSGNLNEFSMVL-LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI  157 (226)
Q Consensus        79 ~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  157 (226)
                      +|.+.+..|+.. +         .++..... +...  ............+..    .+  .+...|..+.+.++.+..+
T Consensus       166 ~a~~~~~~~~~~-~---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         166 WALYTALVKRLS-R---------LGPVTLALLLQLL--LALLLLLLFFLSGFG----AP--ILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHhc-C---------CChHHHHHHHHHH--HHHHHHHHHHhcccc----cc--CCHHHHHHHHHHHHHHHHH
Confidence            999999999875 2         23444443 2222  111111111111111    11  1233466677777877765


Q ss_pred             HHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256          158 SFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       158 ~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~  217 (226)
                      .+..+ ...++.++...+.....+|+.+.+++++++||+++..+++|..+++.|......+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            55554 6899999999999999999999999999999999999999999999888877665

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.1e-18  Score=140.86  Aligned_cols=206  Identities=18%  Similarity=0.254  Sum_probs=160.5

Q ss_pred             cccccccc-cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc---cccc--------------c
Q 027256            3 KFICSLKY-INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI---TDLS--------------F   64 (226)
Q Consensus         3 ~~~~al~~-i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~---~~~~--------------~   64 (226)
                      ++|+++++ +|+|.+.++|+.+++.+|++++++.|+|.+.+|+.++.++.+|++++..   +|.+              +
T Consensus        80 ~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~  159 (330)
T KOG1583|consen   80 TNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDF  159 (330)
T ss_pred             eccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccc
Confidence            57778775 8999999999999999999999999999999999999999999998743   2221              1


Q ss_pred             c--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchh----hhhcC---
Q 027256           65 H--AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVD----YLSRT---  135 (226)
Q Consensus        65 ~--~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---  135 (226)
                      .  ..|..+..++.+..|...++.+..+++++       =|+-|.+||+++.+.|.++...   +|..    ..+..   
T Consensus       160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG-------Kh~~EalFytH~LsLP~Flf~~---~div~~~~~~~~se~~  229 (330)
T KOG1583|consen  160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYG-------KHWKEALFYTHFLSLPLFLFMG---DDIVSHWRLAFKSESY  229 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CChHHHHHHHHHhccchHHHhc---chHHHHHHHHhcCcce
Confidence            1  26777777888999999999999988752       3788999999999999877432   2221    11111   


Q ss_pred             --CCC--cchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 027256          136 --PLL--RLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG  211 (226)
Q Consensus       136 --~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~  211 (226)
                        |..  .-|..|..++..++.-.+.-=..+.....+++++++++-++|+.+++++|++.|++++|++.|+|..+.+.|.
T Consensus       230 ~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt  309 (330)
T KOG1583|consen  230 LIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGT  309 (330)
T ss_pred             eccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHH
Confidence              221  2356677777765554432212223346899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 027256          212 VFFARAK  218 (226)
Q Consensus       212 ~~~~~~~  218 (226)
                      ++|+...
T Consensus       310 ~~fa~~~  316 (330)
T KOG1583|consen  310 LLFANVW  316 (330)
T ss_pred             HHHHHHH
Confidence            9997553

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.77  E-value=8.1e-18  Score=135.59  Aligned_cols=209  Identities=16%  Similarity=0.103  Sum_probs=172.2

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc----cccchHHHHHHHHHHHHH
Q 027256            4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD----LSFHAVGYAWQIINCFLT   79 (226)
Q Consensus         4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~----~~~~~~G~~~~l~s~~~~   79 (226)
                      ++.|+.|+|.|+..++|+|..+.+++.+.++.++|.++.++.+..+..+|.+.....|    .+||..|+.+.-.+-++.
T Consensus       123 sn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~D  202 (367)
T KOG1582|consen  123 SNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLAD  202 (367)
T ss_pred             CcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999887766    478899999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchh-HHHHHHHHHHHHHHHH
Q 027256           80 ASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-FWLVMTLSGFLGLAIS  158 (226)
Q Consensus        80 a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~  158 (226)
                      |.-.-+.++.++..       +.++.++++|...++++..+.....+||..+.+.+-. .+|. ......+-+..+++..
T Consensus       203 A~iGNvQEk~m~~~-------~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fca-ehp~~tyGy~~~~s~~gylG~  274 (367)
T KOG1582|consen  203 AVIGNVQEKAMKMN-------PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCA-EHPVRTYGYAFLFSLAGYLGI  274 (367)
T ss_pred             HHhhHHHHHHHhhC-------CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHH-hCcHhHHHHHHHHHHHhHhhH
Confidence            99988888888743       4577899999999999999999999999765543211 0111 2233333345555544


Q ss_pred             HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          159 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       159 ~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                      .+....+|..++.+++.+.+.|+..++++|+++|.+|+|.+..-|..++..|.++.-+.|+.
T Consensus       275 ~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n  336 (367)
T KOG1582|consen  275 VFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN  336 (367)
T ss_pred             HHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence            44445689999999999999999999999999999999999888888888898877666533

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.70  E-value=1.4e-15  Score=128.06  Aligned_cols=193  Identities=15%  Similarity=0.177  Sum_probs=147.3

Q ss_pred             ccccccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhH----HHHHHHHHHhhhhhcccccc-------cc-hHH
Q 027256            2 FKFICSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRV----WAALFLMIISAISGGITDLS-------FH-AVG   68 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~-~~pv~~~i~~~~~~~~~~~~~~----~~al~l~~~Gv~l~~~~~~~-------~~-~~G   68 (226)
                      ++.+.|.++++++.+..+.+ ++|++..+.+.+++|||.++++    +++++++++|+++....+.+       .+ ..|
T Consensus        74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~G  153 (290)
T TIGR00776        74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKG  153 (290)
T ss_pred             hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhH
Confidence            45678899999999999988 8899999999999999999999    99999999999987542211       33 689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHH----HHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 027256           69 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW  144 (226)
Q Consensus        69 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (226)
                      ..++++|+++|+.|.+..|+..           .++++..+.+..    .+..+..+.   . +     . +++.....|
T Consensus       154 i~~~l~sg~~y~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~---~-~-----~-~~~~~~~~~  212 (290)
T TIGR00776       154 ILLLLMSTIGYLVYVVVAKAFG-----------VDGLSVLLPQAIGMVIGGIIFNLGH---I-L-----A-KPLKKYAIL  212 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-----------CCcceehhHHHHHHHHHHHHHHHHH---h-c-----c-cchHHHHHH
Confidence            9999999999999999998751           466666444332    222222221   0 0     0 111122234


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHh-hcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhH----HHHHHHHHHHHHHHhh
Q 027256          145 LVMTLSGFLGLAISFTSM-WFLH-QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARA  217 (226)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~----iG~~lii~g~~~~~~~  217 (226)
                      ..+ ..|++ ..+.+..| ...+ +.++.+.++++.++|+.+++.++++++|+.++.|+    +|.++++.|+.+....
T Consensus       213 ~~~-~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       213 LNI-LPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHH-HHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            344 37777 45666555 6778 99999999999999999999999999999999999    9999999988876543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00688 rarD rarD protein

Probab=99.70  E-value=1.4e-15  Score=125.86  Aligned_cols=169  Identities=12%  Similarity=0.172  Sum_probs=120.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHH
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASY   82 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~   82 (226)
                      +.+.|++++|++.++++.++.|+++++++.+++|||+++++++++.++++|+.+...++.+.+    .+++.+++++|.|
T Consensus        86 ~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~  161 (256)
T TIGR00688        86 LFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAY  161 (256)
T ss_pred             HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999987754322222    3678899999999


Q ss_pred             HHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 027256           83 SLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM  162 (226)
Q Consensus        83 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (226)
                      .+..|+..++          +..+... .++...|...+.... +++... ..++  ....|..+.+.++++. +.|..+
T Consensus       162 ~i~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~~~~~~l~~~g~~t~-i~~~l~  225 (256)
T TIGR00688       162 GLIRKALKNT----------DLAGFCL-ETLSLMPVAIYYLLQ-TDFATV-QQTN--PFPIWLLLVLAGLITG-TPLLAF  225 (256)
T ss_pred             HHHHhhcCCC----------CcchHHH-HHHHHHHHHHHHHHH-hccCcc-cccC--chhHHHHHHHHHHHHH-HHHHHH
Confidence            9999886431          2222222 123333443332222 121110 1111  1124667777777744 455554


Q ss_pred             -HHHhhcchhHHHHHhhhhhHHHHHHHHHh
Q 027256          163 -WFLHQTGATTYSLVGSLNKIPLSVAGILL  191 (226)
Q Consensus       163 -~~~~~~~~~~~si~~~l~~v~~~i~~~l~  191 (226)
                       .++|+.+|.+.++..+++|+++++++++.
T Consensus       226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence             68999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.69  E-value=2.7e-15  Score=123.02  Aligned_cols=190  Identities=18%  Similarity=0.290  Sum_probs=151.4

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-----------------ccchH
Q 027256            5 ICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-----------------SFHAV   67 (226)
Q Consensus         5 ~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~-----------------~~~~~   67 (226)
                      +.++++++.+++|+++++..++|+++.++++|+|++++||.++.+.++|+.+...++.                 +....
T Consensus        35 ~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (244)
T PF04142_consen   35 FVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLL  114 (244)
T ss_pred             HHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchhHh
Confidence            5689999999999999999999999999999999999999999999999998743111                 11359


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcC--CCCcchhHHH
Q 027256           68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRT--PLLRLPSFWL  145 (226)
Q Consensus        68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  145 (226)
                      |....+.++++.++..++.||.+|+       ++.+.|.......+.+.++.++..... |..+..+.  -..+++..|.
T Consensus       115 G~~~vl~~~~~S~~agVy~E~~lK~-------~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~~~~g~f~G~~~~~~~  186 (244)
T PF04142_consen  115 GLLAVLAAAFLSGFAGVYFEKLLKR-------SNVSLWIQNMQLYLFGILFNLLALLLS-DGSAISESGFFHGYSWWVWI  186 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHHHHHhcc-cccccccCCchhhcchHHHH
Confidence            9999999999999999999999985       345667666666677888877765443 33222111  1123455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHH
Q 027256          146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFF  206 (226)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~l  206 (226)
                      .+...++.|...++    ++|+.+...-+....+..+.+.+.++++||.++|....+|..+
T Consensus       187 ~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  187 VIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            66666777777665    4899999999999999999999999999999999999988764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.67  E-value=9.9e-15  Score=122.43  Aligned_cols=206  Identities=15%  Similarity=0.227  Sum_probs=165.8

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-----c------cccchHHHHHHHH
Q 027256            6 CSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----D------LSFHAVGYAWQII   74 (226)
Q Consensus         6 ~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~-----~------~~~~~~G~~~~l~   74 (226)
                      .++.+++.+++++..++..+.|+++..+++|||.+++||.++.+.+.|+.+...+     |      .+-.+.|...++.
T Consensus       111 val~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~  190 (345)
T KOG2234|consen  111 VALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLV  190 (345)
T ss_pred             HHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHH
Confidence            5678899999999999999999999999999999999999999999999988521     1      1234799999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhc--CCCCcchhHHHHHHHHHH
Q 027256           75 NCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSR--TPLLRLPSFWLVMTLSGF  152 (226)
Q Consensus        75 s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~  152 (226)
                      ++..+++..++.+|++++       .+.+.|-...-..+++.++.+...+.. |.....+  +-..++...|..++..++
T Consensus       191 ~c~~SgfAgvYfEkiLK~-------s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~vVl~~a~  262 (345)
T KOG2234|consen  191 ACFLSGFAGVYFEKILKG-------SNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWLVVLLNAV  262 (345)
T ss_pred             HHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHHHHHHHhc
Confidence            999999999999999874       356777665555577888877776655 3332211  112235566777777888


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhc
Q 027256          153 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS  223 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~  223 (226)
                      .|...+..    .|+.+...-.....+-.+++.+.++.+||.++|..-.+|+.+++.+..+|+..++++++
T Consensus       263 gGLlvs~v----~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~~~  329 (345)
T KOG2234|consen  263 GGLLVSLV----MKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARDAQ  329 (345)
T ss_pred             cchhHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccccc
Confidence            88877753    78888888888888889999999999999999999999999999999999977766533

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.65  E-value=2.4e-15  Score=126.36  Aligned_cols=205  Identities=17%  Similarity=0.121  Sum_probs=156.7

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchHHHHHHH
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQI   73 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--------~~~~~G~~~~l   73 (226)
                      |+.+.||.+.+++..+++.+++-+||..++.++..||+++.|.+++.+.+.|++++..+|.        .-+..|..+++
T Consensus       174 l~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL  253 (416)
T KOG2765|consen  174 LTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLAL  253 (416)
T ss_pred             HHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999977643        12369999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHH----HHHHHHHHHhcchhhhhcCCCCcchhHHHHHHH
Q 027256           74 INCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSL----PLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL  149 (226)
Q Consensus        74 ~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (226)
                      ++|++||.|.+..||-.+++     +++++.-.+.-|.-++.+    |...++-.. ++.  -++.|+..  . ...+++
T Consensus       254 ~sA~~YavY~vllk~~~~~e-----g~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e--~F~lP~~~--q-~~~vv~  322 (416)
T KOG2765|consen  254 LSALLYAVYTVLLKRKIGDE-----GERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEE--RFELPSST--Q-FSLVVF  322 (416)
T ss_pred             HHHHHHHHHHHHHHhhcccc-----cccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccC--cccCCCCc--e-eEeeeH
Confidence            99999999999999977642     134544333333333333    333333333 221  12344321  1 224455


Q ss_pred             HHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256          150 SGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       150 ~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~  217 (226)
                      .++.+.+++-..| .+.-.++|+..++-..+..+.+.+..+++=++++|+.+++|...++.|.+..++.
T Consensus       323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence            6666766654444 6788999999999999999999999999999999999999999999987776654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.64  E-value=9.3e-17  Score=129.28  Aligned_cols=200  Identities=13%  Similarity=0.092  Sum_probs=158.2

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-----cc---------ccchHHH
Q 027256            4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----DL---------SFHAVGY   69 (226)
Q Consensus         4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~-----~~---------~~~~~G~   69 (226)
                      .++|++|+|++-+.++-+.+|++|.++++.++||+.++.+.++..+.+.||+++..+     |.         +-+..|-
T Consensus       114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt  193 (346)
T KOG4510|consen  114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGT  193 (346)
T ss_pred             HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCch
Confidence            468999999999999999999999999999999999999999999999999988532     21         1234788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHH
Q 027256           70 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL  149 (226)
Q Consensus        70 ~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (226)
                      +-++.++++.|.-.+..|++.++         .|....+-|...++....++.....+++    +.|+-  ..-|..++.
T Consensus       194 ~aai~s~lf~asvyIilR~iGk~---------~h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP~c--gkdr~l~~~  258 (346)
T KOG4510|consen  194 VAAISSVLFGASVYIILRYIGKN---------AHAIMSVSYFSLITLVVSLIGCASIGAV----QLPHC--GKDRWLFVN  258 (346)
T ss_pred             HHHHHhHhhhhhHHHHHHHhhcc---------ccEEEEehHHHHHHHHHHHHHHhhccce----ecCcc--ccceEEEEE
Confidence            88888888888888999998653         5666666677777777777777666654    33321  112445567


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256          150 SGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  218 (226)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~  218 (226)
                      .|++|+..+......+..-.+...++..+..-+++.++.+++|+|.+|.+.|.|+++++.+.+....+|
T Consensus       259 lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  259 LGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             ehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            788899888887766555555556788899999999999999999999999999999988777665544

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.62  E-value=2.3e-13  Score=111.47  Aligned_cols=196  Identities=14%  Similarity=0.223  Sum_probs=150.6

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q 027256            7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTL   86 (226)
Q Consensus         7 al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~   86 (226)
                      |.++--+=.+..-....|++..+++.+++|||+++.|++|+.++.+||..-...-.++++....+    ++.|+.|...-
T Consensus        92 Avn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Ygl~R  167 (293)
T COG2962          92 AVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYGLLR  167 (293)
T ss_pred             ecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHHHH
Confidence            33343444555777899999999999999999999999999999999998877666788666544    45788887666


Q ss_pred             HHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHH
Q 027256           87 RRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFL  165 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~  165 (226)
                      |++           +.+..+-...-.+.-.|+.+.+.+..++..+.....   ++..|..+..+|..+.+ ....| .+-
T Consensus       168 K~~-----------~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~---~~~~~~LLv~aG~vTav-pL~lf~~aa  232 (293)
T COG2962         168 KKL-----------KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQN---ANSLWLLLVLAGLVTAV-PLLLFAAAA  232 (293)
T ss_pred             Hhc-----------CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcC---CchHHHHHHHhhHHHHH-HHHHHHHHH
Confidence            554           356676666666778888888888776654311111   22346566666666654 33334 578


Q ss_pred             hhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256          166 HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE  221 (226)
Q Consensus       166 ~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~  221 (226)
                      |+.+-.+.+++++++|...-+++++++||+++..+.+..+.+-.+.++|+...-++
T Consensus       233 ~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~  288 (293)
T COG2962         233 KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYT  288 (293)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998776443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.60  E-value=6.2e-14  Score=112.28  Aligned_cols=197  Identities=16%  Similarity=0.074  Sum_probs=148.9

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc---cccccchHHHHHHHHHHHHHH
Q 027256            4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI---TDLSFHAVGYAWQIINCFLTA   80 (226)
Q Consensus         4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~---~~~~~~~~G~~~~l~s~~~~a   80 (226)
                      .+.|++++|++++..+.++.|+.++.+..    +|  .+..+-+.+.+.|..+..-   +..+.|..|..+++.+..+++
T Consensus        88 FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa  161 (292)
T COG5006          88 FYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWA  161 (292)
T ss_pred             HHHHHHhccchhhhhhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHH
Confidence            45689999999999999999999887762    22  3445555666777766532   234688999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 027256           81 SYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFT  160 (226)
Q Consensus        81 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  160 (226)
                      .|.+..||.-+         ..+.-+-+.+....+..+.+|+-....+       +...+|.....-+..++++..+-|+
T Consensus       162 ~YIv~G~r~g~---------~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYs  225 (292)
T COG5006         162 LYIVLGQRAGR---------AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYS  225 (292)
T ss_pred             HHHHHcchhcc---------cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchH
Confidence            99999998753         1244444455555666666666543222       1223444555556678899999998


Q ss_pred             H-HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhh
Q 027256          161 S-MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER  222 (226)
Q Consensus       161 ~-~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~  222 (226)
                      . +.++|+.++.+.+++..+||.++.+.|++++||++|..||+|++.++.+..-.++.-+|+.
T Consensus       226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~  288 (292)
T COG5006         226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA  288 (292)
T ss_pred             HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence            6 5689999999999999999999999999999999999999999999987765555544443

>TIGR00803 nst UDP-galactose transporter

Probab=99.53  E-value=1.6e-13  Score=111.28  Aligned_cols=189  Identities=17%  Similarity=0.193  Sum_probs=128.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------------------------
Q 027256           10 YINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------------------------   62 (226)
Q Consensus        10 ~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~---------------------------   62 (226)
                      .+++|.+...++..|+++++.+..+.+||+++.|+++..+...|+......|.                           
T Consensus         1 ~isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~   80 (222)
T TIGR00803         1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMF   80 (222)
T ss_pred             CccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccc
Confidence            36899999999999999999999999999999999999999999885322211                           


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcc----hhhhhcCC--
Q 027256           63 SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNE----VDYLSRTP--  136 (226)
Q Consensus        63 ~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--  136 (226)
                      ...+.|....+.++.+.+...++.++..++       ++.+     +|.+....++..+.....++    .......+  
T Consensus        81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~-------~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (222)
T TIGR00803        81 GNPVVGLSAVLSALLSSGFAGVYFEKILKD-------GDTM-----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF  148 (222)
T ss_pred             ccHHHHHHHHHHHHHHHhhhHHHHHHcccC-------CCCc-----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc
Confidence            123466666666777777777777776442       1222     44444444444433322221    11111111  


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256          137 LLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF  214 (226)
Q Consensus       137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~  214 (226)
                      ...+...|..++..    ...+.+...++|+.++.+.+++...|++++.++++++|||+++..+|.|..+++.|+.+|
T Consensus       149 ~~~~~~~~~~~~~~----a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       149 IGYPTAVWIVGLLN----VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             cCCchHHHHHHHHH----HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            11122223233222    223333445799999999999999999999999999999999999999999999887654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.38  E-value=8.9e-12  Score=101.39  Aligned_cols=203  Identities=16%  Similarity=0.179  Sum_probs=151.1

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc----------ccchHHHHHHHHH
Q 027256            6 CSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL----------SFHAVGYAWQIIN   75 (226)
Q Consensus         6 ~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~----------~~~~~G~~~~l~s   75 (226)
                      .++.+.+++.+|++|....+||.+++.-+++++++.++|+++.....|++++...|.          +-...|+.+.+++
T Consensus       105 vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiia  184 (372)
T KOG3912|consen  105 VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIA  184 (372)
T ss_pred             HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHH
Confidence            468889999999999999999999999999999999999999999999998865432          2236999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHH-----hcchhhhh---cCCCC--------c
Q 027256           76 CFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV-----FNEVDYLS---RTPLL--------R  139 (226)
Q Consensus        76 ~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~--------~  139 (226)
                      -+.-|.+++..+|..++.       +.+|.+.+.|.-+++..++..+...     .++..+--   .+.++        .
T Consensus       185 qiivaiQ~v~Eek~l~~~-------nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e  257 (372)
T KOG3912|consen  185 QIIVAIQMVCEEKQLKKS-------NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQE  257 (372)
T ss_pred             HHHHHHHHHHHHhhhhhc-------cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcC
Confidence            999999999999988763       5677777766665554333322221     12111000   00000        0


Q ss_pred             chhHHHHHHHHHHHH--HHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256          140 LPSFWLVMTLSGFLG--LAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       140 ~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~  217 (226)
                      .|..  .+...+...  ...|++.....|..|+++-.++-.+|..+..++++....|.+...|+.|.++.+.|.+.|+..
T Consensus       258 ~p~l--~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i  335 (372)
T KOG3912|consen  258 SPSL--AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI  335 (372)
T ss_pred             Cchh--HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  111222211  224566666779999999999999999999999999999999999999999999999998643

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.22  E-value=1.8e-10  Score=83.30  Aligned_cols=134  Identities=12%  Similarity=0.142  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHH
Q 027256           69 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT  148 (226)
Q Consensus        69 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  148 (226)
                      .+++++|+++++...+..|--.+         +.||-.-.+.-++....+........|+++..    ...++..|..+.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~---------~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~----~~~~~k~~lfli   71 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLE---------GVDPDFATTIRTIVILIFLLIVLLVTGNWQAG----GEIGPKSWLFLI   71 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---------ccCccHHHHHHHHHHHHHHHHHHHhcCceecc----cccCcceehhhh
Confidence            57999999999999888887654         35666555666677777777777777776432    223455688889


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      ++|+.+-.--++.|.+++.=.+..+..+.-..++++++++++++||++|..+|+|++++.+|.++.+
T Consensus        72 lSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          72 LSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9998887777777788888777777777888999999999999999999999999999999977643

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.18  E-value=2.8e-10  Score=83.05  Aligned_cols=123  Identities=17%  Similarity=0.308  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHH
Q 027256           78 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI  157 (226)
Q Consensus        78 ~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  157 (226)
                      ++|.+.+..|+..+         +.++....++....+.+ .++.....+..+  ...   .++..+....+.+.++...
T Consensus         2 ~~a~~~~~~k~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~   66 (126)
T PF00892_consen    2 SWAIYSVFSKKLLK---------KISPLSITFWRFLIAGI-LLILLLILGRKP--FKN---LSPRQWLWLLFLGLLGTAL   66 (126)
T ss_pred             eeeeHHHHHHHHhc---------cCCHHHHHHHHHHHHHH-HHHHHHhhcccc--ccC---CChhhhhhhhHhhccceeh
Confidence            56778888888765         37889999998888887 666665554332  111   1223355566666665444


Q ss_pred             HHH-HHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          158 SFT-SMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       158 ~~~-~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      ++. .+.+.++.++...+.+.+++|+++.++++++++|+++..+++|+++++.|.++..
T Consensus        67 ~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   67 AYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            444 4578999999999999999999999999999999999999999999999887653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.99  E-value=7.2e-11  Score=94.99  Aligned_cols=197  Identities=9%  Similarity=0.051  Sum_probs=148.0

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchHHHHHHHHH
Q 027256            4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQIIN   75 (226)
Q Consensus         4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~s   75 (226)
                      -..|.||.++...+.+-+-..+.+++++++++|.|.++.++.+++++..|+.++...|.        +.+..|++++++.
T Consensus        95 vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~G  174 (336)
T KOG2766|consen   95 VVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAG  174 (336)
T ss_pred             EeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEec
Confidence            35688999999999999999999999999999999999999999999999998765442        2346999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHH-HHHH
Q 027256           76 CFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLS-GFLG  154 (226)
Q Consensus        76 ~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  154 (226)
                      +-+||..++..+.+.+|         .+..+++....+++.++..+. ++.+.. +... -+| +   |-...+. ...+
T Consensus       175 ATlYaVSNv~EEflvkn---------~d~~elm~~lgLfGaIIsaIQ-~i~~~~-~~~t-l~w-~---~~i~~yl~f~L~  238 (336)
T KOG2766|consen  175 ATLYAVSNVSEEFLVKN---------ADRVELMGFLGLFGAIISAIQ-FIFERH-HVST-LHW-D---SAIFLYLRFALT  238 (336)
T ss_pred             ceeeeeccccHHHHHhc---------CcHHHHHHHHHHHHHHHHHHH-Hhhhcc-ceee-Eee-h---HHHHHHHHHHHH
Confidence            99999999999888764         566777777777788777776 333221 1111 111 2   1111222 2333


Q ss_pred             HHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256          155 LAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  218 (226)
Q Consensus       155 ~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~  218 (226)
                      .++-|+.. ..+|..|++..++-.....+.++++  -.||-+.++...+..+.+..|.++|+-++
T Consensus       239 MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re  301 (336)
T KOG2766|consen  239 MFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE  301 (336)
T ss_pred             HHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence            34455544 4578899998887777777887776  67899999999999999999999996543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.95  E-value=5.2e-08  Score=82.33  Aligned_cols=140  Identities=11%  Similarity=0.093  Sum_probs=103.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhH
Q 027256           64 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF  143 (226)
Q Consensus        64 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (226)
                      ....|..+.++++++++...+..|.. .         ++++.++.++....+.++..+.....++.++....  ..++..
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---------~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~   72 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---------YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQK   72 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c---------CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHH
Confidence            34589999999999999999999764 2         37899999999999888777766544432221110  011222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          144 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      +......++.......+.+.+++++++...++..+..|+++.++++++++|+++..+|+|+++.+.|+.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         73 IFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            323333333333345555678999999999999999999999999999999999999999999999987653

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.94  E-value=4.2e-08  Score=82.30  Aligned_cols=133  Identities=11%  Similarity=0.076  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHH
Q 027256           69 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT  148 (226)
Q Consensus        69 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  148 (226)
                      ..+.+++++++|.+.+..|+..++         .++.  .++......+...|........ ..+..+   ....|..+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~---------~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---~~~~~~~~~   67 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK---------EPDF--LWWALLAHSVLLTPYGLWYLAQ-VGWSRL---PATFWLLLA   67 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc---------hhHH--HHHHHHHHHHHHHHHHHHhccc-CCCCCc---chhhHHHHH
Confidence            568899999999999999987542         1232  3555555666666655432111 111111   122243445


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      ..+.......++.+.+.++.++...+.+.+..|+++.+++++++||+++..+|+|+++++.|+.+...
T Consensus        68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        68 ISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            55665666666667789999999999999999999999999999999999999999999999876643

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00688 rarD rarD protein

Probab=98.93  E-value=6.4e-08  Score=80.01  Aligned_cols=138  Identities=17%  Similarity=0.153  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhh-cCCCCcchhHHH
Q 027256           67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPLLRLPSFWL  145 (226)
Q Consensus        67 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  145 (226)
                      .|..+.++++++++...+..|.. .         +.++.++.++-.+.+.++..+.....++.++.. +.+.......+.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~---------~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-K---------PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLIL   71 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-c---------cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHH
Confidence            48899999999999999999873 2         378999999999988888776654444322110 111111111233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256          146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF  214 (226)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~  214 (226)
                      .+...+++......+.+.+++++++.+.++..+..|+++.+++.++++|+++..+++|+.+.+.|+.+.
T Consensus        72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            445556655555555567899999999999999999999999999999999999999999999997754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.89  E-value=1.2e-08  Score=79.39  Aligned_cols=197  Identities=15%  Similarity=0.140  Sum_probs=137.9

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--ccchHHHHHHHHHHHHHH
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--SFHAVGYAWQIINCFLTA   80 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--~~~~~G~~~~l~s~~~~a   80 (226)
                      -...+++.++.+.++.+..|.--|+.+++++.+|+|+..-|+++.++...|+.+.++.|.  ..++.|..++..|+...|
T Consensus        69 ~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~~aA  148 (290)
T KOG4314|consen   69 LYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAFMAA  148 (290)
T ss_pred             HHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999999999999999887654  456999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCch----hHH-HHH-HHHHHHHHHHHHHHhc-c-hhhhhcCCCCcchhHHHHHHHHHH
Q 027256           81 SYSLTLRRVMDTAKQVTKSGNLNEF----SMV-LLN-NSLSLPLGVLLVIVFN-E-VDYLSRTPLLRLPSFWLVMTLSGF  152 (226)
Q Consensus        81 ~~~i~~~~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~  152 (226)
                      .|-+..|+...+.       ++...    .-+ |++ .+.++|....  .+++ | +++. ...+      |.-++-.+.
T Consensus       149 lYKV~FK~~iGnA-------n~Gdaa~FmS~LGF~NL~~~~~~~lIL--~~T~VE~~qsF-A~~P------WG~l~G~A~  212 (290)
T KOG4314|consen  149 LYKVLFKMFIGNA-------NFGDAAHFMSCLGFFNLCFISFPALIL--AFTGVEHLQSF-AAAP------WGCLCGAAG  212 (290)
T ss_pred             HHHHHHHHHhccC-------cchhHHHHHHHHHHHHHHHHhhhHHHH--HHhchHHHHHH-hhCC------chhhhhHHH
Confidence            9999999987643       22211    111 111 1223333222  1222 2 2222 1111      433333333


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          153 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      .....|+..-..+....|...|+=..........+..++-+-..+....+|..+++.|.++.-
T Consensus       213 L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii  275 (290)
T KOG4314|consen  213 LSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII  275 (290)
T ss_pred             HHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence            344445444345667788877776666667777778877777888889999999888866553

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.71  E-value=1.3e-06  Score=75.81  Aligned_cols=139  Identities=17%  Similarity=0.130  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256           66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL  145 (226)
Q Consensus        66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      ..-+.-.++.-++|+.+.+..|..++        ..+++....+|-..++.++++++.+..+...   ..+. .+...|.
T Consensus        12 ~~~~~~~~~~q~~~~~~~~~~k~a~~--------~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~~-~~~~~~~   79 (358)
T PLN00411         12 AVFLTAMLATETSVVGISTLFKVATS--------KGLNIYPFLGYSYLLASLLLLPSLFFTNRSR---SLPP-LSVSILS   79 (358)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCc-chHHHHH
Confidence            35566777888999999999999885        3688999999988888888888776543211   1111 1122355


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHh------cCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILL------FKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~------f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      .+.+.|+++...+...+..++.+++...+++.+..|+++.++++++      ++|+++..+++|+++++.|+.+...
T Consensus        80 ~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         80 KIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            6666777775444455678999999999999999999999999999      7999999999999999999876543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.67  E-value=2.4e-06  Score=70.57  Aligned_cols=172  Identities=15%  Similarity=0.150  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHhCcccChhHH----HHHHHHHHhhhhhcccccc--------cchHHHHHHHHHHHHHHHHHHHHHH
Q 027256           21 NVTNVITAVGEMYLFNKRHDNRVW----AALFLMIISAISGGITDLS--------FHAVGYAWQIINCFLTASYSLTLRR   88 (226)
Q Consensus        21 ~~~pv~~~i~~~~~~~~~~~~~~~----~al~l~~~Gv~l~~~~~~~--------~~~~G~~~~l~s~~~~a~~~i~~~~   88 (226)
                      ..+-+.+.+.+.++++|..+..++    .|++++++|+.+.+..|.+        ....|....+++.+.|..|....|.
T Consensus        80 g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen   80 GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            456777899999999998776664    4889999999988764421        1247999999999999999888665


Q ss_pred             HhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027256           89 VMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQT  168 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (226)
                      .           +.++++..+=+++-.+.-...+....++  ..++      ...|-. ++.|+.=...|.+.+...+..
T Consensus       160 ~-----------~~~~~~~~lPqaiGm~i~a~i~~~~~~~--~~~~------k~~~~n-il~G~~w~ignl~~~is~~~~  219 (269)
T PF06800_consen  160 F-----------HVSGWSAFLPQAIGMLIGAFIFNLFSKK--PFFE------KKSWKN-ILTGLIWGIGNLFYLISAQKN  219 (269)
T ss_pred             c-----------CCChhHhHHHHHHHHHHHHHHHhhcccc--cccc------cchHHh-hHHHHHHHHHHHHHHHhHHhc
Confidence            3           3678888776665555544444443311  1111      112333 344555555677766778899


Q ss_pred             chhHHHHHhhhhhHHHHHHHHHhcCCCCCchhH----HHHHHHHHHHH
Q 027256          169 GATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGV  212 (226)
Q Consensus       169 ~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~----iG~~lii~g~~  212 (226)
                      +..+.-.++-+..+++++.|+++++|+=|..++    +|.++++.|.+
T Consensus       220 G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  220 GVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             cchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999998786644    57777777654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.58  E-value=5.8e-08  Score=70.38  Aligned_cols=61  Identities=28%  Similarity=0.477  Sum_probs=55.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccccc
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF   64 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~   64 (226)
                      ..+.|+++.| +...++.++.|+++++++.+++|||++++++.++.++++|++++..+|.+.
T Consensus        51 ~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~  111 (113)
T PF13536_consen   51 LFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTG  111 (113)
T ss_pred             HHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence            3467899999 688899999999999999999999999999999999999999998877653

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.49  E-value=3.6e-06  Score=60.93  Aligned_cols=103  Identities=22%  Similarity=0.355  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHh
Q 027256          113 SLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILL  191 (226)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~  191 (226)
                      ..+.+.........++..+.++... ..+  |.+.+..|+++...++..+ .+.+..++ ..+....+.|+++.++|.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    6 LFSVLFLLIILLIRGRLRDLFRALR-RKP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHH-hCc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            4556666666665555433322110 011  3345555666664455544 57888885 77789999999999999999


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHHhhhh
Q 027256          192 FKVPTSLENSASIFFGLLAGVFFARAKM  219 (226)
Q Consensus       192 f~e~~t~~~~iG~~lii~g~~~~~~~~~  219 (226)
                      |+|+++..+++|+++++.|+.+..+.+.
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999888776543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.40  E-value=2.4e-06  Score=63.34  Aligned_cols=122  Identities=19%  Similarity=0.182  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHH
Q 027256           67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV  146 (226)
Q Consensus        67 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (226)
                      .|+.+.+++.++.+...+..|+-.++.         .+.+.... .   .    .....         .   .+|.   .
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~---------g~~~~~~~-~---~----~~~~~---------~---~~p~---~   49 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRL---------PLLSHAWD-F---I----AALLA---------F---GLAL---R   49 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhC---------CCccchhH-H---H----HHHHH---------H---hccH---H
Confidence            478899999999998888888865532         11111000 0   0    00000         0   0121   1


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHH--hcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          147 MTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGIL--LFKVPTSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       147 l~~~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l--~f~e~~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                      .++.++.+..+++..| .++|+.++..+..+..+.++...+.++.  +|||++|+.+++|+++++.|++..+..++|
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            2455677777777766 5799999999988888888777777775  899999999999999999999988765444

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.30  E-value=4.2e-06  Score=70.86  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   58 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~   58 (226)
                      .++.|+.+.|.+..+-+.....++.++++..++|||++++.+.+..+++.|+.+..
T Consensus        66 ~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   66 LNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            34678899999999999999999999999999999999999999999999998653

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.29  E-value=3e-05  Score=64.14  Aligned_cols=140  Identities=16%  Similarity=0.198  Sum_probs=108.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 027256           65 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW  144 (226)
Q Consensus        65 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (226)
                      +..|+.+++.+-+.++.--.+.|-+.          ..++.|+..+-.+.++|+.+......+.+.+.++  ...+|..+
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~----------~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~   72 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLE----------PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTL   72 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHc----------cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHH
Confidence            45899999999999999888888764          3578899999989999999888888777665544  22345545


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256          145 LVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~  217 (226)
                      ..+.+++.. ...|...| ++...-....+|.=-+++|.+.+++|.++++|+++..||+..++..+|+..-.+.
T Consensus        73 ~~~~l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          73 LMLALTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            454443332 23466666 4777778889999899999999999999999999999999999999887765544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.26  E-value=1.7e-05  Score=65.31  Aligned_cols=104  Identities=15%  Similarity=0.073  Sum_probs=77.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHH-HHHHHHHhhcchhHHHHHhhh
Q 027256          101 NLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAIS-FTSMWFLHQTGATTYSLVGSL  179 (226)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~si~~~l  179 (226)
                      ..++++..++..+.+.+...+.....         ++   ...|......+.++.... ...+.+++++++...+++...
T Consensus        15 ~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~---~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~   82 (260)
T TIGR00950        15 QVPLYFAVFRRLIFALLLLLPLLRRR---------PP---LKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYL   82 (260)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhc---------cC---HhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhh
Confidence            45778888887777777766544321         11   112334445555554444 444578999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          180 NKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       180 ~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      .|+++.+++.++++|+++..+++|+.+++.|..+...
T Consensus        83 ~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        83 APLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             hHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            9999999999999999999999999999999877643

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.25  E-value=1.4e-06  Score=63.25  Aligned_cols=56  Identities=23%  Similarity=0.417  Sum_probs=52.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   58 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~   58 (226)
                      +.+.++++++++...++.++.|+++++++++++||+++++++.++.+++.|+.+..
T Consensus        70 ~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   70 LYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.21  E-value=1.7e-06  Score=62.46  Aligned_cols=57  Identities=14%  Similarity=0.276  Sum_probs=53.0

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   58 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~   58 (226)
                      ++...+++++|++.+..+-++.|+++++.+++++|||+++++++++.++++|+++.+
T Consensus        52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999999999999999999999999999998765

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.20  E-value=0.00014  Score=62.95  Aligned_cols=138  Identities=12%  Similarity=0.055  Sum_probs=98.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC-chhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhH
Q 027256           65 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLN-EFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF  143 (226)
Q Consensus        65 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (226)
                      ++.-..+.+..-.+...+.+..|..+++         .+ |+.+..++.+.+.....+.. ..+ .....+.+.  ....
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~---------~~~P~~l~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~--~~~~  113 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALNM---------LPLPWTISSLQLFVGWLFALLYW-ATG-FRKIPRIKS--LKLF  113 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CChhHHHHHHHHHHHHHHHHHHH-HhC-CCCCCCCCC--HHHH
Confidence            4444445555555556667788887753         56 89888888777766554432 222 111101111  1224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          144 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      |..++..|+++.........+++.+++...+++-..+|+++.+++.++++|+++..++.|+++++.|+.+..
T Consensus       114 ~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        114 LKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            556777788887666555678899999999999999999999999999999999999999999999887654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.19  E-value=9.7e-05  Score=62.27  Aligned_cols=129  Identities=16%  Similarity=0.081  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHH
Q 027256           70 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL  149 (226)
Q Consensus        70 ~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (226)
                      +..++-.+.++...+..|...+         +.+|.+..++-.+.+.++.++.....+..     .+.   ...|.....
T Consensus        11 ~~~~~~~~iWg~~~~~~K~~~~---------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~~---~~~~~~~~~   73 (292)
T PRK11272         11 GALFALYIIWGSTYLVIRIGVE---------SWPPLMMAGVRFLIAGILLLAFLLLRGHP-----LPT---LRQWLNAAL   73 (292)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCc---HHHHHHHHH
Confidence            3455677888888888887643         47899999999888888877765543211     111   122444455


Q ss_pred             HHHHHHHH-HHHHHHHH-hhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          150 SGFLGLAI-SFTSMWFL-HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       150 ~~~~~~~~-~~~~~~~~-~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      .|.+.... ....+... +..++...++..+..|+++.+++.+ ++|+++..+++|+.+.+.|+.+...
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            56555433 33334555 8888889999999999999999985 7999999999999999999876643

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.12  E-value=0.0002  Score=60.61  Aligned_cols=124  Identities=7%  Similarity=-0.028  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHH
Q 027256           77 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA  156 (226)
Q Consensus        77 ~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  156 (226)
                      .+...+.++.|...++.        ..|+.+.+.....+.....+. ...+..+    .+. .+...|..+...|++...
T Consensus        12 ~~~~~~~~~NK~~l~~~--------~~P~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~-~~~~~~~~~~~~g~~~~~   77 (302)
T TIGR00817        12 FLNVYFNIYNKKLLNVF--------PYPYFKTLISLAVGSLYCLLS-WSSGLPK----RLK-ISSALLKLLLPVAIVHTI   77 (302)
T ss_pred             HHHHHHHHHHHHHHhhC--------ChhHHHHHHHHHHHHHHHHHH-HHhCCCC----CCC-CCHHHHHHHHHHHHHHHH
Confidence            33444566777776531        246777777666665544433 1111111    111 112335566666777655


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256          157 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF  214 (226)
Q Consensus       157 ~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~  214 (226)
                      .......+++++++...+++....|+++.+++.++++|+++..+++|.++++.|+.+.
T Consensus        78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            4445557899999999999999999999999999999999999999999999988654

specificities overlap.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.10  E-value=0.00017  Score=60.90  Aligned_cols=129  Identities=15%  Similarity=0.028  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHH
Q 027256           67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV  146 (226)
Q Consensus        67 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (226)
                      .+++.+++++++++...+..|...+         +++|....++-...+.++..+..   ... ..   .. ..   +..
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~---------~~~P~~~~~~R~~~a~l~l~~~~---~~~-~~---~~-~~---~~~   63 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSE---------SLGPVGGAAMIYSVSGLLLLLTV---GFP-RL---RQ-FP---KRY   63 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHHHHHHHc---ccc-cc---cc-cc---HHH
Confidence            5677889999999999888887654         47899988887777776666432   111 10   00 01   112


Q ss_pred             HHHHHHHHHHHHHHHHHHH----hhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          147 MTLSGFLGLAISFTSMWFL----HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       147 l~~~~~~~~~~~~~~~~~~----~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      ++..++.........+...    +..++...+++.++.|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus        64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence            2222332222222222333    35677888899999999999999999999999999999999999977654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.02  E-value=6.4e-05  Score=54.24  Aligned_cols=63  Identities=17%  Similarity=0.150  Sum_probs=52.6

Q ss_pred             HHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          153 LGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      .+....+..+ .++++.+...+...-.+.++.+.++|+++|||++|..+++|+++++.|+....
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3444444444 57889999988888889999999999999999999999999999999987654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.97  E-value=0.00038  Score=58.85  Aligned_cols=124  Identities=12%  Similarity=0.041  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHH
Q 027256           70 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL  149 (226)
Q Consensus        70 ~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (226)
                      .+.++++++++...+..|...+         +++|....++-...+.++.++..  ..+     +.    .   +..+..
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~---------~~~p~~~~~~R~~~a~~~l~~~~--~~~-----~~----~---~~~~~~   63 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLH---------NMPPLMLAGLRFMLVAFPAIFFV--ARP-----KV----P---LNLLLG   63 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHh--cCC-----CC----c---hHHHHH
Confidence            5678889999999899987654         47899999887776655444322  110     00    1   111222


Q ss_pred             HHHHHHHHHHH-HHHHHhh-cchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          150 SGFLGLAISFT-SMWFLHQ-TGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       150 ~~~~~~~~~~~-~~~~~~~-~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      .|+......+. .+...++ .++...+++....|+++.++++++++|+++..+++|+++.+.|+.+...
T Consensus        64 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         64 YGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            23333333332 2345565 5778888899999999999999999999999999999999999776643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.79  E-value=0.00097  Score=56.54  Aligned_cols=128  Identities=16%  Similarity=0.194  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhhhhhhhcccCCC-CchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 027256           80 ASYSLTLRRVMDTAKQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAIS  158 (226)
Q Consensus        80 a~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (226)
                      ..+.+..|++.++.      ... .++-+.+.+.........+.....+..     .+. ..|  +......+++-...+
T Consensus        13 ~~~g~~qE~i~~~~------~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~~~-~~~--~~~~~~~~~~~~~~~   78 (303)
T PF08449_consen   13 CSYGILQEKIMTTP------YGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----KSR-KIP--LKKYAILSFLFFLAS   78 (303)
T ss_pred             HHHHHHHHHHHcCC------CCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----CCC-cCh--HHHHHHHHHHHHHHH
Confidence            34667788877642      122 366666766666666655554443300     011 111  222233345555555


Q ss_pred             HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256          159 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE  221 (226)
Q Consensus       159 ~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~  221 (226)
                      .....+++.++..+..+.-..+++.+.++++++++++.+..++.+..++..|+.+....+.++
T Consensus        79 ~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~  141 (303)
T PF08449_consen   79 VLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS  141 (303)
T ss_pred             HHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence            566678899999999999999999999999999999999999999999999999887665443

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.78  E-value=0.00063  Score=57.39  Aligned_cols=132  Identities=11%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 027256           68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM  147 (226)
Q Consensus        68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  147 (226)
                      |++++++++++++...+..|+.. +         .++.+...  ...+..+.........+.       ....+..+..-
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g---------~~~~~~~~--~~~g~l~~~~~~~~~~~~-------~~~~~~~~~~g   62 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-G---------GPYSQTLG--TTFGALILSIAIAIFVLP-------EFWALSIFLVG   62 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-C---------CHHHHHHH--HHHHHHHHHHHHHHHhCC-------cccccHHHHHH
Confidence            67899999999999999998863 1         22323321  223333333333222221       11123334333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHhh-hhhHHHHHHHHHhcCCCCCchh----HHHHHHHHHHHHHHHhhh
Q 027256          148 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLEN----SASIFFGLLAGVFFARAK  218 (226)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~-l~~v~~~i~~~l~f~e~~t~~~----~iG~~lii~g~~~~~~~~  218 (226)
                      .++|..=...|++.+.+.|.++........+ +.++..++.+.++|+|..+..+    .+|.++++.|.++....+
T Consensus        63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            3444443345666677899999888877777 8888999999999999999999    999999999988876654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.70  E-value=8.8e-06  Score=59.21  Aligned_cols=56  Identities=20%  Similarity=0.324  Sum_probs=51.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   58 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~   58 (226)
                      +.+.|++.-++|...-+-.++|+++.+++++++|||++.++++++.++++|+++.+
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            56778888888888889999999999999999999999999999999999998764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.68  E-value=5.7e-05  Score=55.95  Aligned_cols=59  Identities=10%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHH--HhCcccChhHHHHHHHHHHhhhhhccc
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMY--LFNKRHDNRVWAALFLMIISAISGGIT   60 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~--~~~~~~~~~~~~al~l~~~Gv~l~~~~   60 (226)
                      ++.+.+++++|++.+..+.+..+..+++.++.  ++||++++++++++.++++|+.++..+
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            46778999999999999999999999888885  899999999999999999999988653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.67  E-value=0.0034  Score=51.94  Aligned_cols=140  Identities=20%  Similarity=0.161  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256           66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL  145 (226)
Q Consensus        66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      ..+....+..++.++......|...++        +.+.....++....+.+...+...  .+...  ..+.. .+  +.
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-~~--~~   70 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVES--------LDPFLFAAALRFLIAALLLLPLLL--LEPRG--LRPAL-RP--WL   70 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCChHHHHHHHHHHHHHHHHHHHH--hhccc--ccccc-cc--hH
Confidence            456677777778888877777776432        234455555455545544222111  11100  11111 11  22


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHH-HhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          146 VMTLSGFLGL-AISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGI-LLFKVPTSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       146 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~-l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                      .....+.++. ...+..+.+++++++...+.+....|+++.+++. ++++|+++..++.|..+.+.|+++....+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            3334444444 4444455679999999999999999999999997 6679999999999999999998877655443

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.65  E-value=0.00039  Score=50.73  Aligned_cols=67  Identities=15%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHH-HHHhhcchhH-HHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256          152 FLGLAISFTSM-WFLHQTGATT-YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  218 (226)
Q Consensus       152 ~~~~~~~~~~~-~~~~~~~~~~-~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~  218 (226)
                      +..+..++..+ .++|+.+... +++..-+..+.++++|+++|||++|+.+++|+++++.|++..+...
T Consensus        37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            33444444444 4667666543 4455667889999999999999999999999999999988776544

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.61  E-value=0.00051  Score=49.39  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHH-HHHhhcchhH-HHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256          152 FLGLAISFTSM-WFLHQTGATT-YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  218 (226)
Q Consensus       152 ~~~~~~~~~~~-~~~~~~~~~~-~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~  218 (226)
                      +.++.+++..+ .++|+.+... +++..-+..+.+++.|+++|||++|+.+++|+++++.|++..+..+
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44455555544 4667666543 4555667889999999999999999999999999999988876544

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.57  E-value=0.00034  Score=57.59  Aligned_cols=77  Identities=13%  Similarity=0.096  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          144 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                      .....+.+++-.+-|...+.+++..+|.+..+....|.+++.++++++++++++..||+++.+...|+.+.+.....
T Consensus        17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            34556677777778888888999999999999999999999999999999999999999999999998887766443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.52  E-value=0.0025  Score=54.74  Aligned_cols=70  Identities=11%  Similarity=0.121  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256          148 TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~  217 (226)
                      ++.+++=...||....+.+.++.+..+++.....+++.+++++++++++++.+++|+.+++.|..+....
T Consensus        83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            3457888889999999999999999999999999999999999999999999999999999997765444

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.0003  Score=59.06  Aligned_cols=56  Identities=11%  Similarity=0.167  Sum_probs=52.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256            3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   58 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~   58 (226)
                      .++.|..+.|.+..+.+.+++.+..++++..++|||+++.-.+++.++++|..+..
T Consensus        80 ~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   80 ANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             hhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            36778899999999999999999999999999999999999999999999998664

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.33  E-value=0.00031  Score=51.26  Aligned_cols=58  Identities=12%  Similarity=0.086  Sum_probs=51.9

Q ss_pred             ccccccccccchhHHHHHH-HHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027256            2 FKFICSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI   59 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~-~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~   59 (226)
                      |+-..+++++|++.+-.+- ...-+.+.+.+.++++|++++.+++++.++++|++....
T Consensus        45 ~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         45 IFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            4456789999999998884 689999999999999999999999999999999988754

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.24  E-value=0.03  Score=41.93  Aligned_cols=130  Identities=15%  Similarity=0.229  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHH
Q 027256           69 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT  148 (226)
Q Consensus        69 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  148 (226)
                      ..+++++..+-+.+...+.++.++.        -|++.-.+.+...+........+..++. +..+.++  .|  |+. .
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~--------gs~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~--~p--~w~-~   68 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKAL--------GSPLVASFISFGVGFILLLIILLITGRP-SLASLSS--VP--WWA-Y   68 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhcc--CC--hHH-h
Confidence            4677788888888888877775532        1588888888888888888888777654 2211111  11  322 3


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhh-HHHHHHHHH-hc---CCCCCchhHHHHHHHHHHHH
Q 027256          149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNK-IPLSVAGIL-LF---KVPTSLENSASIFFGLLAGV  212 (226)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~-v~~~i~~~l-~f---~e~~t~~~~iG~~lii~g~~  212 (226)
                      ..|++|.....+.....++.++.........-. +.+.+++-. +|   ++++++.+.+|.++++.|..
T Consensus        69 lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   69 LGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            478888887777777889999988877665544 445555554 33   46899999999999988865

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.0035  Score=44.45  Aligned_cols=64  Identities=19%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             HHHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256          154 GLAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       154 ~~~~~~~~~-~~~~~~~~-~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~  217 (226)
                      +...+|... .++|.++- +.+++.+-...+.+.+.|+++|||++++.+++|+.+++.|++..+..
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            334444443 35676654 45678888899999999999999999999999999999998876543

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.20  E-value=0.00058  Score=49.12  Aligned_cols=57  Identities=16%  Similarity=0.209  Sum_probs=50.7

Q ss_pred             cccccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027256            3 KFICSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI   59 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~-~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~   59 (226)
                      +-..+++++|++.+-.+-. ..-+.+.+.+++++||++++.+++++.++++|++....
T Consensus        46 ~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3456889999999998854 78899999999999999999999999999999998754

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.04  E-value=0.01  Score=49.37  Aligned_cols=114  Identities=12%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh-hh
Q 027256          102 LNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLR-LPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVG-SL  179 (226)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~-~l  179 (226)
                      -+|.+..+-+.+-+.++.+...++.        .|.+. ++..|..-.++|++=.+.+...+.+.++.+-.+...++ -.
T Consensus        10 G~~~~Q~lG~t~Gali~alv~~~~~--------~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~   81 (269)
T PF06800_consen   10 GKPANQILGTTIGALIFALVVFLFR--------QPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGL   81 (269)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhH
Confidence            3567777666666666666554442        22222 23344455566665555555555556655555444444 25


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHH----HHHHHHHHHHHHHhhhhhhhc
Q 027256          180 NKIPLSVAGILLFKVPTSLENSA----SIFFGLLAGVFFARAKMWERS  223 (226)
Q Consensus       180 ~~v~~~i~~~l~f~e~~t~~~~i----G~~lii~g~~~~~~~~~~~~~  223 (226)
                      +.+.+.++|+++|||.-+..+++    ++++++.|..+-+++++++++
T Consensus        82 QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   82 QLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            77889999999999988876655    778888888888777666553

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.00  E-value=0.036  Score=39.72  Aligned_cols=63  Identities=16%  Similarity=0.228  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256          152 FLGLAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF  214 (226)
Q Consensus       152 ~~~~~~~~~~~-~~~~~~~~-~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~  214 (226)
                      +.+..+++..+ .++|+.+. ..+++..-+..+.+++.|+++|||++|+.+++|+++++.|++..
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            44445555544 46676664 44677778888999999999999999999999999999998764

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.00  E-value=0.0012  Score=47.06  Aligned_cols=56  Identities=14%  Similarity=0.142  Sum_probs=49.0

Q ss_pred             cccccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256            3 KFICSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   58 (226)
Q Consensus         3 ~~~~al~~i~~~~~~il~~-~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~   58 (226)
                      +-..+++++|++.+-.+=. ..-+.+.+.+.+++||++++.+++++.++++|++...
T Consensus        45 ~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         45 LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            3456789999998877665 8889999999999999999999999999999998764

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.94  E-value=0.026  Score=48.68  Aligned_cols=142  Identities=13%  Similarity=0.050  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256           66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL  145 (226)
Q Consensus        66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      ..|+++.++++++++...+-.|+ .++.+.      .+-|......+-+.+|..... +..++..+..+..   ++..+.
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w~w------E~~W~v~gi~~wl~~~~~~g~-~~~~~f~~~~~~~---~~~~~~   74 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VKKWSW------ETMWSVGGIFSWLILPWLIAA-LLLPDFWAYYSSF---SGSTLL   74 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cCCCch------hHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHhc---CHHHHH
Confidence            58999999999999999888887 332110      011332222222222221111 1122332222211   233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCCC---Cc----hhHHHHHHHHHHHHHHHhh
Q 027256          146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPT---SL----ENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~-~~l~~v~~~i~~~l~f~e~~---t~----~~~iG~~lii~g~~~~~~~  217 (226)
                      .-.++|.+=...|...+...|..+-.....+ .-+..+.+++++.+++||-.   +.    ...+|+++++.|..+.+++
T Consensus        75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            4444555444455555555665554433322 33677899999999998643   33    3567999999999988885


Q ss_pred             h
Q 027256          218 K  218 (226)
Q Consensus       218 ~  218 (226)
                      .
T Consensus       155 g  155 (345)
T PRK13499        155 G  155 (345)
T ss_pred             h
Confidence            3

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.91  E-value=0.0015  Score=46.80  Aligned_cols=54  Identities=19%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             ccccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027256            4 FICSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG   57 (226)
Q Consensus         4 ~~~al~~i~~~~~~il~~-~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~   57 (226)
                      -..+++++|++.+-.+=. ..-+.+.+.+.+++||++++.|+.++.+++.|++..
T Consensus        52 Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         52 LSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            346789999998776654 778889999999999999999999999999999865

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.90  E-value=0.013  Score=41.80  Aligned_cols=65  Identities=14%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          152 FLGLAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       152 ~~~~~~~~~~~-~~~~~~~~-~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      +.++..++..+ .++|..+. ..+++..-+..+.+.+.|+++|||++|+.+++|+++++.|++..+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            33444444443 45666554 4567788889999999999999999999999999999999887643

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.89  E-value=0.058  Score=45.46  Aligned_cols=105  Identities=7%  Similarity=-0.032  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256           66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL  145 (226)
Q Consensus        66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      ..|..+.+++.++++......|...+         +.++++..++-...+.++..+.......     ..+    ...|.
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~---------~~~~~~~~~~R~~~a~l~l~~~~~~~~~-----~~~----~~~~~   72 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFP---------LVGAPGVTALRLALGTLILIAIFKPWRL-----RFA----KEQRL   72 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHH---------HcCHHHHHHHHHHHHHHHHHHHHhHHhc-----cCC----HHHHH
Confidence            58899999999999999998888765         3688999999888888777654321110     111    11233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHH
Q 027256          146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAG  188 (226)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~  188 (226)
                      ..+..|.+....++..+.+++++++...++.....|+++.+++
T Consensus        73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~  115 (293)
T PRK10532         73 PLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS  115 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            3334444444455555678899999999999999998888776

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.85  E-value=0.056  Score=46.25  Aligned_cols=141  Identities=13%  Similarity=0.120  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcch--hh-hhcCC--CCcchhHHH
Q 027256           71 WQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEV--DY-LSRTP--LLRLPSFWL  145 (226)
Q Consensus        71 ~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~  145 (226)
                      ..+...+-.+......|...++.     +.++.+-+.++.+-+.-+++.....+..+..  +. ..+..  -+.++....
T Consensus        19 ~l~~~t~~~~~l~l~l~ys~~~~-----~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l   93 (345)
T KOG2234|consen   19 SLIVLTAQNTALTLLLRYSRTRE-----KPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETL   93 (345)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcCC-----CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH
Confidence            33334444455555555543321     2356777777777777777776665543211  11 10111  011222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256          146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      -+.+-++.-.+-|...+..++..+|.+.++...+|...+.+++++++++.++.+||...++...|+...+.
T Consensus        94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen   94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            44555566666676666789999999999999999999999999999999999999999999999888883

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.81  E-value=0.29  Score=42.33  Aligned_cols=209  Identities=11%  Similarity=0.105  Sum_probs=108.7

Q ss_pred             ccccccchhHHHHHH-HHHHHHHHHHHHHHhCccc---C----hhHHHHHHHHHHhhhhhcc----ccc--------ccc
Q 027256            6 CSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRH---D----NRVWAALFLMIISAISGGI----TDL--------SFH   65 (226)
Q Consensus         6 ~al~~i~~~~~~il~-~~~pv~~~i~~~~~~~~~~---~----~~~~~al~l~~~Gv~l~~~----~~~--------~~~   65 (226)
                      .+.+++.+|...-+. .++-+...++..++++|-.   +    ..-.++++++++|+++.+.    .|.        +++
T Consensus        92 ~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~  171 (345)
T PRK13499         92 LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFN  171 (345)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccc
Confidence            345555555554443 5666777788888888654   2    2357888999999998865    332        122


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHH----HHHHHHHHHHHH---hcc-hhhhhcCC
Q 027256           66 -AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LSLPLGVLLVIV---FNE-VDYLSRTP  136 (226)
Q Consensus        66 -~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~-~~~~~~~~  136 (226)
                       ..|..+++++.+.++.|......-..-.+ ...+.+.+++....-+..    -++...++++..   .++ .....+..
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~-~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHE-AAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhh-hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence             59999999999999999854433221100 000123444332222111    111111111111   111 10011111


Q ss_pred             CCcchhHHHHHHHHHHHHH---HHHHHHHHHHhhcchhHHHH---Hh-hhhhHHHHHHHHHhcCCCCC------chhHHH
Q 027256          137 LLRLPSFWLVMTLSGFLGL---AISFTSMWFLHQTGATTYSL---VG-SLNKIPLSVAGILLFKVPTS------LENSAS  203 (226)
Q Consensus       137 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~si---~~-~l~~v~~~i~~~l~f~e~~t------~~~~iG  203 (226)
                      .. .+..+-..++..+.|.   ..++.....-++.+.....+   ++ .+.-+++.+.|+ +++|.=+      ...++|
T Consensus       251 ~~-~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        251 LA-KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence            10 0111222222222232   22333334445554433333   34 566688889999 4888766      556889


Q ss_pred             HHHHHHHHHHHHhh
Q 027256          204 IFFGLLAGVFFARA  217 (226)
Q Consensus       204 ~~lii~g~~~~~~~  217 (226)
                      .++++.|..+....
T Consensus       329 ~vliI~g~~lig~~  342 (345)
T PRK13499        329 CVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999888776543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.63  E-value=0.0035  Score=44.46  Aligned_cols=56  Identities=20%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027256            5 ICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT   60 (226)
Q Consensus         5 ~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~   60 (226)
                      ..|++++|++.+-.+ .....+.+.+.+++++||+.++.+++++.++++|++.....
T Consensus        48 s~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          48 SLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            467899999987655 46778889999999999999999999999999999876543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.62  E-value=0.021  Score=48.50  Aligned_cols=117  Identities=17%  Similarity=0.193  Sum_probs=78.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 027256           65 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW  144 (226)
Q Consensus        65 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (226)
                      ...|..+++.++++.+......|+-..+.+.    .+...-+                     +..+.     ..++..|
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~----~~~~~~~---------------------~~~~~-----l~~~~W~   54 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR----GSLRAGS---------------------GGRSY-----LRRPLWW   54 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccccc---------------------hhhHH-----HhhHHHH
Confidence            4689999999999999998888886554321    0010000                     00000     1122223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          145 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      ..++. ...|...++   .++...++...+.++.+.-+++.+++-.+++|+++..++.|+++++.|....-
T Consensus        55 ~G~~~-~~~g~~~~~---~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   55 IGLLL-MVLGEILNF---VALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHHHH-HhcchHHHH---HHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            33332 233444444   35667788888888889999999999999999999999999999999976543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.61  E-value=0.0085  Score=41.69  Aligned_cols=54  Identities=19%  Similarity=0.250  Sum_probs=29.0

Q ss_pred             HHHHHHHHH-HHHhhcchhHH-HHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHH
Q 027256          154 GLAISFTSM-WFLHQTGATTY-SLVGSLNKIPLSVAGILLFKVPTSLENSASIFFG  207 (226)
Q Consensus       154 ~~~~~~~~~-~~~~~~~~~~~-si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~li  207 (226)
                      +...++..+ .++|+.+...+ .+..-+..+.+.+.|+.+|||++|..+++|+.++
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            444444444 46777766555 5666788899999999999999999999999874

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.50  E-value=0.0042  Score=46.78  Aligned_cols=57  Identities=12%  Similarity=0.164  Sum_probs=52.4

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256            2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   58 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~   58 (226)
                      ++++..+++.+.-+++++.....+.+.+++.++++|+++..++.++.+.+.|+.++.
T Consensus        96 ~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   96 LSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            355677889999999999999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.16  E-value=0.0093  Score=48.73  Aligned_cols=51  Identities=12%  Similarity=0.248  Sum_probs=47.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhh
Q 027256            5 ICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAI   55 (226)
Q Consensus         5 ~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~   55 (226)
                      +.++.++|-+.+.++.++.|.+.++.++++++|+++..||.++..++.++.
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999999888776

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.14  E-value=0.0025  Score=52.46  Aligned_cols=67  Identities=15%  Similarity=0.172  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      +=|+.|+......|++.++.+-..+++.....|++++++++++++|+.|....+|..+.+.|+++..
T Consensus       102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            3344454444444556788888888899999999999999999999999999999999999987664

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.12  E-value=0.0045  Score=43.10  Aligned_cols=49  Identities=12%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             ccccccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHH
Q 027256            2 FKFICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLM   50 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~   50 (226)
                      ++-..+++++|++.+-.+ .....+.+.+.+.+++||++++.|+.++.++
T Consensus        44 ~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   44 YFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            345678999999998665 5699999999999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.77  E-value=0.0014  Score=53.28  Aligned_cols=178  Identities=16%  Similarity=0.194  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHhCcccChhH----HHHHHHHHHhhhhhccccc--------ccchHHHHHHHHHHHHHHHHHHHHHH
Q 027256           21 NVTNVITAVGEMYLFNKRHDNRV----WAALFLMIISAISGGITDL--------SFHAVGYAWQIINCFLTASYSLTLRR   88 (226)
Q Consensus        21 ~~~pv~~~i~~~~~~~~~~~~~~----~~al~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~s~~~~a~~~i~~~~   88 (226)
                      ..+-+-+-+++.+.++|..+..+    .+|++++++|+.+.++.|.        +.--.|....+.|.+.|-.|.+..+.
T Consensus        94 G~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~  173 (288)
T COG4975          94 GMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQL  173 (288)
T ss_pred             hhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeecc
Confidence            34566778889999999877666    4688899999999887653        11137877777899999998776655


Q ss_pred             HhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027256           89 VMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQT  168 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (226)
                      .           +.+.++..+-++.-.....+.+....+|..        .+...|..+ +.|+.=...|...+.+.++.
T Consensus       174 f-----------~v~g~saiLPqAiGMv~~ali~~~~~~~~~--------~~K~t~~ni-i~G~~Wa~GNl~ml~a~~~~  233 (288)
T COG4975         174 F-----------DVDGLSAILPQAIGMVIGALILGFFKMEKR--------FNKYTWLNI-IPGLIWAIGNLFMLLAAQKV  233 (288)
T ss_pred             c-----------cccchhhhhHHHHHHHHHHHHHhhcccccc--------hHHHHHHHH-hhHHHHHhhHHHHHHhhhhh
Confidence            3           356677666565555555454444332211        112224333 44444445566666666666


Q ss_pred             chhHHHHHhhhhhHHHHHHHHHhcCCCCCchhH----HHHHHHHHHHHHHHhhh
Q 027256          169 GATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARAK  218 (226)
Q Consensus       169 ~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~----iG~~lii~g~~~~~~~~  218 (226)
                      +-.+.=.++-+--+.+++-|+++++|+=|..++    +|+++++.|..+....|
T Consensus       234 GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K  287 (288)
T COG4975         234 GVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK  287 (288)
T ss_pred             ceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence            655554555667788889999999999887765    47888888877665443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.75  E-value=0.019  Score=46.83  Aligned_cols=132  Identities=10%  Similarity=0.115  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 027256           68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM  147 (226)
Q Consensus        68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  147 (226)
                      ++..+++=++.++....+..|...           +|.+...-+++-++.+.++..++. +       | ..+...+..-
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG-----------~p~qQ~lGtT~GALifaiiv~~~~-~-------p-~~T~~~~iv~   62 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG-----------KPYQQTLGTTLGALIFAIIVFLFV-S-------P-ELTLTIFIVG   62 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC-----------ChhHhhhhccHHHHHHHHHHheee-c-------C-ccchhhHHHH
Confidence            466778888888887666655432           466666556666666655544332 1       1 1122223333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHhh-hhhHHHHHHHHHhcCCCCCchhHH----HHHHHHHHHHHHHhhhh
Q 027256          148 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLENSA----SIFFGLLAGVFFARAKM  219 (226)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~-l~~v~~~i~~~l~f~e~~t~~~~i----G~~lii~g~~~~~~~~~  219 (226)
                      .++|.+=.+.+.-.+.+.+.++...+..+++ .+.+-+.++|++.|+|-.++.+.+    ..++++.|.++-+++++
T Consensus        63 ~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          63 FISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             HHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            3444433333333344444333333332222 578899999999999998887654    46666777776666655

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.05  E-value=0.039  Score=39.72  Aligned_cols=53  Identities=15%  Similarity=0.229  Sum_probs=44.6

Q ss_pred             cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027256            5 ICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG   57 (226)
Q Consensus         5 ~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~   57 (226)
                      +..++..|+|.+.-+ .++.=++|++.++++.+|..+++.++++.+++.|+.++
T Consensus        59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            345677778777777 48899999999988888888999999999999999765

Many members are annotated as potential transmembrane proteins.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.03  E-value=2  Score=32.54  Aligned_cols=138  Identities=16%  Similarity=0.119  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256           66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL  145 (226)
Q Consensus        66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      +....+++++..+-..+.-.+.++.+..       + +|.--.+.+...+...+..+.+..++.... ..   ..+..|+
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~-------~-spl~As~isf~vGt~~L~~l~l~~~~~~~~-a~---~~~~pwW   71 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYL-------G-SPLLASLISFLVGTVLLLILLLIKQGHPGL-AA---VASAPWW   71 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHc-------C-ChHHHHHHHHHHHHHHHHHHHHHhcCCCch-hh---ccCCchH
Confidence            3556677788888888777777765432       1 454444455566666666666554332221 11   0111242


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-hhhhhHHHHHHHHHh-cC---CCCCchhHHHHHHHHHHHHHHHh
Q 027256          146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLV-GSLNKIPLSVAGILL-FK---VPTSLENSASIFFGLLAGVFFAR  216 (226)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~-~~l~~v~~~i~~~l~-f~---e~~t~~~~iG~~lii~g~~~~~~  216 (226)
                      . ..-|++|..+-.+.-...++.++++...+ -.-+-+.+.+++-+= |+   .+++...++|+++++.|.++.+.
T Consensus        72 ~-~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          72 A-WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             H-HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            2 34567776555555455666666655443 334445555555552 33   57999999999999988555443

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.20  E-value=0.12  Score=44.65  Aligned_cols=72  Identities=11%  Similarity=0.024  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                      +-|..=++.||....+++.++....++++.....++..+|.++-+|++|....++..+.+.|+++.+..+.+
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence            445556777888777899999999999999999999999999999999999999999999999888765443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=91.00  E-value=0.18  Score=39.97  Aligned_cols=61  Identities=13%  Similarity=0.040  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256          157 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  217 (226)
Q Consensus       157 ~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~  217 (226)
                      .||....++++++|+.++-....+..+.-++++++++|++.....+..++.+.|+.+.++.
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~  126 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA  126 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence            3565556899999999999999999999999999999999999999999999887776644

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=90.67  E-value=1.1  Score=32.36  Aligned_cols=48  Identities=17%  Similarity=0.028  Sum_probs=35.9

Q ss_pred             HhhcchhHHHHH-hhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 027256          165 LHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGV  212 (226)
Q Consensus       165 ~~~~~~~~~si~-~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~  212 (226)
                      +++.+-.....+ +.+.-+++.+.++++.+|..+...++|+++++.|+.
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~  110 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA  110 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence            444444333333 457788999999888888889999999999998864

Many members are annotated as potential transmembrane proteins.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=89.34  E-value=13  Score=32.14  Aligned_cols=141  Identities=11%  Similarity=0.147  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHH----HHHHHHHHHHHHHHHHHhcchhhhhcCCCCcch
Q 027256           66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV----LLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLP  141 (226)
Q Consensus        66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (226)
                      ..|.++..+.+++++.+.+=.||..+           =+||..    ...+-+-+|....... ..+..+.....+.  .
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk~-----------WsWEs~Wlv~gi~swli~P~~~a~l~-ip~~~~i~~~~~~--~   71 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVKG-----------WSWESYWLVQGIFSWLIVPWLWALLA-IPDFFSIYSATPA--S   71 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcCC-----------ccHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHhCCh--h
Confidence            48999999999999998887877632           234433    3333333444333222 2344333332211  1


Q ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHhhcch-hHHHHHhhhhhHHHHHHHHHhc-------CCCCCchhHHHHHHHHHHHH
Q 027256          142 SFWLVMTLSGFLGLA-ISFTSMWFLHQTGA-TTYSLVGSLNKIPLSVAGILLF-------KVPTSLENSASIFFGLLAGV  212 (226)
Q Consensus       142 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~si~~~l~~v~~~i~~~l~f-------~e~~t~~~~iG~~lii~g~~  212 (226)
                      ..+...++..+-|.. ++|.  ..+|+.+- +..++..-+-.++.+++-.++-       +.+-.....+|.++++.|+.
T Consensus        72 ~l~~~~l~G~lWGIGgltfG--l~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa  149 (344)
T PF06379_consen   72 TLFWTFLFGVLWGIGGLTFG--LAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA  149 (344)
T ss_pred             HHHHHHHHHHHHhcchhhHh--HHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence            112122221111110 1111  23444332 2222222233333333333332       22334567889999999999


Q ss_pred             HHHhhhhhhh
Q 027256          213 FFARAKMWER  222 (226)
Q Consensus       213 ~~~~~~~~~~  222 (226)
                      +..++..+|.
T Consensus       150 i~g~AG~~Ke  159 (344)
T PF06379_consen  150 ICGKAGSMKE  159 (344)
T ss_pred             HHhHHHHhhh
Confidence            9888864443

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=86.80  E-value=1.4  Score=36.45  Aligned_cols=132  Identities=18%  Similarity=0.216  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 027256           68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM  147 (226)
Q Consensus        68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  147 (226)
                      |+..+++|+++++...+=.||.-          ..|+.-.+.+++...+.......+..+.+       .. .|    +-
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~----------~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-------~f-~p----~a   58 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD----------TGDGFFFQWVMCSGIFLVGLVVNLILGFP-------PF-YP----WA   58 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc----------CCCcHHHHHHHHHHHHHHHHHHHHhcCCC-------cc-ee----HH
Confidence            56778888888888777776642          23566666666655555555444443221       11 11    11


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhH-HHHHhhhhhHHHHHHHHH-hcCCC-----CCchhHHHHHHHHHHHHHHHhhhhh
Q 027256          148 TLSGFLGLAISFTSMWFLHQTGATT-YSLVGSLNKIPLSVAGIL-LFKVP-----TSLENSASIFFGLLAGVFFARAKMW  220 (226)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~si~~~l~~v~~~i~~~l-~f~e~-----~t~~~~iG~~lii~g~~~~~~~~~~  220 (226)
                      .+.|.+=...|....-.+|.++-.. ..+.+..+-+.+-..|-+ +||++     -....++|+++++.|+.++...|.+
T Consensus        59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~  138 (254)
T PF07857_consen   59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE  138 (254)
T ss_pred             HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence            1222222222333222334433222 122233333444443322 45432     2366899999999999999876544


Q ss_pred             h
Q 027256          221 E  221 (226)
Q Consensus       221 ~  221 (226)
                      +
T Consensus       139 ~  139 (254)
T PF07857_consen  139 E  139 (254)
T ss_pred             C
Confidence            3

The region concerned is approximately 280 residues long.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=86.57  E-value=19  Score=30.62  Aligned_cols=133  Identities=14%  Similarity=0.067  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhhhhhhhcccCCC-CchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 027256           80 ASYSLTLRRVMDTAKQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAIS  158 (226)
Q Consensus        80 a~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (226)
                      -.+.++.+|+..+ +...+++++ ++.-+.+-+.+.+.........   .+...   .....  .|..-...++....-.
T Consensus        27 l~~gVlQEki~T~-~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~---~~k~~---~~~~a--pl~~y~~is~tn~~s~   97 (327)
T KOG1581|consen   27 LTWGVLQEKIMTR-PYGEDGERFEHSLFLVFCQRLVALLVSYAMLK---WWKKE---LSGVA--PLYKYSLISFTNTLSS   97 (327)
T ss_pred             HHHHHHhcceeec-ccCcccccccccHHHHHHHHHHHHHHHHHHHh---ccccc---CCCCC--chhHHhHHHHHhhcch
Confidence            3456667766543 111123344 4555666677777766643322   22211   11111  2334445556666666


Q ss_pred             HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256          159 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE  221 (226)
Q Consensus       159 ~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~  221 (226)
                      .+.+.++|+.+=-+..+.-..|-+...+.+.++.+.+.+....+=..++-.|+.++...+..+
T Consensus        98 ~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen   98 WCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             HHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            677778999998888888889999999999999999999998888777777877776654433

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=81.72  E-value=20  Score=30.29  Aligned_cols=53  Identities=15%  Similarity=0.137  Sum_probs=45.6

Q ss_pred             HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256          163 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  215 (226)
Q Consensus       163 ~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~  215 (226)
                      ..+-.++++...+.--...+++-+++..+++.+++..||.|+..+.+|.....
T Consensus       105 vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg  157 (372)
T KOG3912|consen  105 VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG  157 (372)
T ss_pred             HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence            35677888888888778889999999999999999999999999999876554

>PRK02237 hypothetical protein; Provisional

Probab=81.41  E-value=17  Score=25.91  Aligned_cols=48  Identities=10%  Similarity=-0.068  Sum_probs=38.4

Q ss_pred             hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256          171 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  218 (226)
Q Consensus       171 ~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~  218 (226)
                      -..+-.+-+--+.+++.++.+-+++++...++|.++++.|..+..+.+
T Consensus        60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            345556666677888899999999999999999999999987665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.57
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.36
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.31
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.16

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.57  E-value=1.3e-07  Score=69.77  Aligned_cols=68  Identities=9%  Similarity=0.009  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHH-HHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256          151 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  218 (226)
Q Consensus       151 ~~~~~~~~~~~~-~~~~~~~~~~~si~-~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~  218 (226)
                      +++++.+.+..+ .++|+.++..+..+ ..+.|++++++|+++|||++|+.+++|+++++.|++..+..+
T Consensus        36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            444555555544 57999999988887 899999999999999999999999999999999998887644

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.36  E-value=2.1e-06  Score=60.87  Aligned_cols=68  Identities=9%  Similarity=0.009  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHH-HHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256          151 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  218 (226)
Q Consensus       151 ~~~~~~~~~~~~-~~~~~~~~~~~si~-~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~  218 (226)
                      +..+....+..+ .++|+.+...+..+ ..+.++.++++|+++|||++|..+++|+++++.|++..+..+
T Consensus        36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            334444444444 57899999888777 899999999999999999999999999999999988876544

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.31  E-value=4.6e-07  Score=64.34  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=54.0

Q ss_pred             ccccccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027256            2 FKFICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT   60 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~   60 (226)
                      ++...+++++|++.+..+ +...|+++++++.+++||++++.+++++.+++.|+++....
T Consensus        45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            345678999999999998 89999999999999999999999999999999999987654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.16  E-value=6.5e-07  Score=65.95  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=43.3

Q ss_pred             ccccccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027256            2 FKFICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT   60 (226)
Q Consensus         2 ~~~~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~   60 (226)
                      ++.+.+++++|++.+..+ .++.|++++++++++++|++++.+++++.++++|+++....
T Consensus        45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            456788999999999888 99999999999999999999999999999999999988543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00