Citrus Sinensis ID: 027295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHccccccccccccccccEEEEEEEEEccccccEEEEccccccccccEEEEccccEEEEEEEEEEccEEEcccEEEEEEEEccEEEcccEEccccccccccccEEcccccccccccEEcEEEcEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEccccccEEEEcccccccHHcEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEccEEEEEEEEEEEEEccccccEEEEcccEEccccccccEEEEEEEc
Coil and Loop (DISEMBL)
mslavgvdsssknmglddkdksnksevsgetmpktppneenvdeqsggmsrqmsensisvtedeeddedrkielgpqytlkeqfekdkddESLRRWKEQLLGsvdfesvgeslEPEVKILSLAiktpsrpdivlsvpengrpkgswftlkegsrysLQFSFQVRNNIVSGLKYTNTVWktglkvdstkmmlgtfspqaepytqelpedttpsgffargsysakic
Flexible Loop (DISEMBL)
mslavgvdsssknmglddkdksnksevsgetmpktppneenvdeqsggmsrqmsensisvtedeeddedrkielgpqytlkeqfekdkddeslRRWKEQLlgsvdfesvgeslEPEVKILSlaiktpsrpdivlsvpengrpkgSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC
Low Complexity Region (SEG)
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTedeeddedRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC
Disordered region (IsUnstruct)
***************************************************************************************************LLGSVDF*********EVKILSLAIKT****DIVLSV******KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML**********************************
Disordered Region (DISOPRED)
********************************************************************************KEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC
Disordered Region (DISEMBL)
*********************************************************************RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC
Disordered Region (DISPRO)
*SL****D*************************************************************RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9SFC6	240	Rho GDP-dissociation inhi	yes	no	0.777	0.729	0.727	9e-73
Q4R4J0	204	Rho GDP-dissociation inhi	N/A	no	0.715	0.789	0.383	2e-21
P52565	204	Rho GDP-dissociation inhi	yes	no	0.715	0.789	0.383	2e-21
Q61599	200	Rho GDP-dissociation inhi	yes	no	0.711	0.8	0.379	2e-21
Q9TU03	200	Rho GDP-dissociation inhi	yes	no	0.751	0.845	0.380	6e-21
P19803	204	Rho GDP-dissociation inhi	no	no	0.724	0.799	0.381	6e-21
Q5XI73	204	Rho GDP-dissociation inhi	no	no	0.724	0.799	0.381	6e-21
Q99PT1	204	Rho GDP-dissociation inhi	no	no	0.724	0.799	0.381	6e-21
Q95UQ1	197	Putative rho GDP-dissocia	yes	no	0.662	0.756	0.350	5e-20
P52566	201	Rho GDP-dissociation inhi	no	no	0.648	0.726	0.393	2e-19

>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1

 Score =  273 bits (697), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/176 (72%), Positives = 151/176 (85%), Gaps = 1/176 (0%)

Query: 48  GMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFE 107
            +SRQMSE+S+  TE+EEDD D K++LGPQYT+KE  EKDKDDESLR+WKEQLLGSVD  
Sbjct: 39  ALSRQMSESSLCATEEEEDD-DSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVT 97

Query: 108 SVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNI 167
           ++GE+L+PEV+I SLAI +P RPDIVL VPENG PKG WFTLKEGS+Y+L+F+F V NNI
Sbjct: 98  NIGETLDPEVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNI 157

Query: 168 VSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           VSGL+YTNTVWKTG+KVD  K MLGTFSPQ EPY   +PE+TTPSG FARGSYSA+
Sbjct: 158 VSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSAR 213

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 6/167 (3%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +  +   P V +
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVV 72

Query: 120 LSLAIKTPSRP---DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNT 176
             L +   S P   ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY   
Sbjct: 73  TGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQH 131

Query: 177 VWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
            ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGSYS K
Sbjct: 132 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK 178

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 6/167 (3%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +  +   P V +
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVV 72

Query: 120 LSLAIKTPSRP---DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNT 176
             L +   S P   ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY   
Sbjct: 73  TGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQH 131

Query: 177 VWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
            ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGSYS K
Sbjct: 132 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK 178

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 6/166 (3%)

Query: 62  EDEEDDEDRKIELGP--QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
           E+ +DD D K+   P  Q +LKE  E DKDDESL ++K+ LLG  D   V +   P V +
Sbjct: 11  EEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DVPVVADPTVPNVTV 68

Query: 120 LSLAIKTPSRPD-IVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
             L++   S P  I + +  +    K   F LKEG  Y ++ +F+V  +IVSGLKY    
Sbjct: 69  TRLSLVCDSAPGPITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHT 128

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           ++TG++VD    M+G++ P+ E Y    P +  P G  ARG+Y  K
Sbjct: 129 YRTGMRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK 174

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3

 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 7/176 (3%)

Query: 53  MSENSISVTEDEEDDE-DRKIELGP--QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESV 109
           M+E +     +E+DDE D K+   P  Q +LKE  E DKDDESL ++K+ LLG  D   V
Sbjct: 1   MTEKAPEPHVEEDDDELDGKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVV 58

Query: 110 GESLEPEVKILSLAIKTPSRPD-IVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNI 167
            +   P V +  L +   S P  I + +  +    K   F LKEG  Y ++ +F+V  +I
Sbjct: 59  ADPTAPNVTVTRLTLVCESAPGPITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDI 118

Query: 168 VSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           VSGLKY    ++TG+KVD    M+G++ P+ E Y    P +  P G  ARG+Y  K
Sbjct: 119 VSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNK 174

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3

 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTR 74

Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           L+L   T   P ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           + G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ K
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIK 178

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1

 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTR 74

Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           L+L   T   P ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           + G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ K
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIK 178

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3

 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTR 74

Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           L+L   T   P ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           + G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ K
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIK 178

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE=1 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 8/157 (5%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVL 134
           G   ++ +  ++D +DE+L+R+KE LLG+       +  +  +K + + I+   RPD + 
Sbjct: 17  GKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQIE--GRPDTIY 74

Query: 135 SVPEN---GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML 191
            +         K   F LKE   Y +  +F ++++IVSGLK TNTV++ G+KV + K ML
Sbjct: 75  PLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIKVSTEKHML 134

Query: 192 GTFSPQAEPYTQELPE---DTTPSGFFARGSYSAKIC 225
           G+F+PQA  ++   P    +  PSG  ARGSY+AK+ 
Sbjct: 135 GSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVV 171

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them (By similarity). Regulates the Rac-dependent signaling pathways controlling cytokinesis, actin reorganization and the contractile vacuole. Required for efficient accumulation of cap at the cell cortex.

Dictyostelium discoideum (taxid: 44689)

>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 4/150 (2%)

Query: 76  PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
           PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct: 28  PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 85

Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
            +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct: 86  DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 145

Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           + P+ E Y    P +  P G  ARG+Y  K
Sbjct: 146 YGPRPEEYEFLTPVEEAPKGMLARGTYHNK 175

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224137328	257	predicted protein [Populus trichocarpa]	0.982	0.859	0.726	3e-86
224089617	243	predicted protein [Populus trichocarpa]	0.924	0.855	0.754	5e-85
356520100	249	PREDICTED: rho GDP-dissociation inhibito	0.982	0.887	0.694	8e-83
449443560	259	PREDICTED: rho GDP-dissociation inhibito	0.977	0.849	0.693	2e-81
388508888	242	unknown [Lotus japonicus]	0.964	0.896	0.690	3e-81
356564466	249	PREDICTED: rho GDP-dissociation inhibito	0.991	0.895	0.687	5e-81
255583030	246	Rho GDP-dissociation inhibitor, putative	0.96	0.878	0.703	2e-80
449453577	240	PREDICTED: rho GDP-dissociation inhibito	0.946	0.887	0.695	5e-80
255559076	243	Rho GDP-dissociation inhibitor, putative	0.906	0.839	0.727	8e-78
359495546	245	PREDICTED: rho GDP-dissociation inhibito	0.964	0.885	0.684	2e-77

>gi|224137328|ref|XP_002322530.1| predicted protein [Populus trichocarpa] gi|222867160|gb|EEF04291.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 167/230 (72%), Positives = 197/230 (85%), Gaps = 9/230 (3%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEE--NVDE-QSGGMSRQMSENS 57
           MSL  GV+S++K+MG D+K+K   SE +  T  KTPPNEE  NVDE +SGG+SR+MSE+S
Sbjct: 1   MSLEAGVNSNTKSMGFDEKNKEEVSETAATT--KTPPNEEENNVDEPKSGGISRKMSESS 58

Query: 58  ISVTEDEEDD----EDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESL 113
           +  T+ EE+D     +RKIELGPQ TLKEQ EKDKDDESLRRWKEQLLG+VD E+ GE+L
Sbjct: 59  LYGTDQEEEDDEETNERKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGAVDIEAAGETL 118

Query: 114 EPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKY 173
           EPEVKILSL IK+  RPDIVLSVPENG+PKGSWFTLKEGSRYSLQF+F+V+NNIVSGLKY
Sbjct: 119 EPEVKILSLEIKSSGRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKY 178

Query: 174 TNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           TNTVWKTG+KVDS+K M+GTFSPQ EPYT E+PE+TTPSG FARGSY+A+
Sbjct: 179 TNTVWKTGIKVDSSKEMIGTFSPQTEPYTHEMPEETTPSGMFARGSYAAR 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089617|ref|XP_002308781.1| predicted protein [Populus trichocarpa] gi|222854757|gb|EEE92304.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 163/216 (75%), Positives = 188/216 (87%), Gaps = 8/216 (3%)

Query: 14  MGLDDKDKSNKSEVSGETMPKTPPNEE-NVDE-QSGGMSRQMSENSISVTEDEED----D 67
           MG D+K+K   SE    T  KTPPNEE NVDE +SGG+SR+MSE+S+  T+ EE+     
Sbjct: 1   MGFDEKNKDEVSETKATT--KTPPNEEHNVDEPKSGGISRKMSESSLYATDQEEEDDDES 58

Query: 68  EDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTP 127
            +RKIELGPQYTLKEQ EKDKDDESLRRWKEQLLG+VD E+VGE+LEPEVKILSL IK+P
Sbjct: 59  HERKIELGPQYTLKEQLEKDKDDESLRRWKEQLLGAVDIEAVGETLEPEVKILSLEIKSP 118

Query: 128 SRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST 187
            RPDIVLSVPENG+PKGSWFTLKEGSRYSLQF+F+V+NNIVSGLKY+NTVWKTG+KVDS+
Sbjct: 119 GRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKYSNTVWKTGVKVDSS 178

Query: 188 KMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           K M+GTFSPQAEPYT E+PE+TTPSG FARGSY+AK
Sbjct: 179 KEMIGTFSPQAEPYTHEMPEETTPSGIFARGSYAAK 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520100|ref|XP_003528703.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 182/226 (80%), Gaps = 5/226 (2%)

Query: 1   MSLAVGVDSSSKNMGLDD---KDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENS 57
           MSL +GV S+ K+MG DD   KD       +G+T+     ++E+ DE+   +SR MSE S
Sbjct: 1   MSLDIGVVSNCKSMGFDDDKGKDVPETQHAAGKTV--HAHDDESGDERGTSLSRHMSEGS 58

Query: 58  ISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEV 117
           I+VTEDE++D +R+I+LGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGESLEPEV
Sbjct: 59  IAVTEDEDEDVERRIDLGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMTSVGESLEPEV 118

Query: 118 KILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
           KILSLAIK   R DIVL +PE+G P G WFTLKEGSRYSL F+FQV +NIVSGLKYTNTV
Sbjct: 119 KILSLAIKAAGREDIVLPIPESGNPSGLWFTLKEGSRYSLMFTFQVSHNIVSGLKYTNTV 178

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           WKTGLKVDSTK M+GTFSPQAEPYT E+PE+TTPSG FARG YSA+
Sbjct: 179 WKTGLKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGLFARGQYSAR 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443560|ref|XP_004139545.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449508966|ref|XP_004163456.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/232 (69%), Positives = 187/232 (80%), Gaps = 12/232 (5%)

Query: 1   MSLAVGVDSSSKN--MGLDDKDKSNKSEVSGETMPKTPPNEENVDEQ-------SGGMSR 51
           MS+AV + SSSK   MG D+KDK  K E   ++ PK    ++  DE+       S GM+R
Sbjct: 1   MSVAVEIGSSSKGIIMGFDEKDKDGKQE---DSSPKLLERKKGEDEEQEVDVVPSSGMTR 57

Query: 52  QMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGE 111
           +MSE+SI  TE+E+D++ RKIELGPQYTLKE  EKDKDDESLRRWKEQLLG VDFESVGE
Sbjct: 58  KMSESSICATEEEDDEDGRKIELGPQYTLKELNEKDKDDESLRRWKEQLLGDVDFESVGE 117

Query: 112 SLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGL 171
           +LEP+VKILSLAIK+  RPDIVL VPE+G PKG WFTLKEGSRYSL+F+FQV NNIVSGL
Sbjct: 118 TLEPDVKILSLAIKSSGRPDIVLPVPESGNPKGLWFTLKEGSRYSLKFTFQVSNNIVSGL 177

Query: 172 KYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           KYTNTVWKTG+KVDSTK M+GTFSPQ EPY  E+ E+TTPSG FARGSYSA+
Sbjct: 178 KYTNTVWKTGVKVDSTKEMIGTFSPQPEPYDHEMQEETTPSGIFARGSYSAR 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508888|gb|AFK42510.1| unknown [Lotus japonicus]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 181/223 (81%), Gaps = 6/223 (2%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISV 60
           MSLA+GV S+ K+MG DD DK N    +G+T       +E+       ++R +SE+SI++
Sbjct: 1   MSLAIGVVSNCKSMGFDD-DKHNVD--TGKTAIDYASGDEH---HERNLTRHVSESSIAI 54

Query: 61  TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL 120
           TED++DD +RKIELGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  +VGE+LEPEVKIL
Sbjct: 55  TEDDDDDLERKIELGPQVTLKEQLEKDKDDESLRRWKEQLLGSVDVNAVGETLEPEVKIL 114

Query: 121 SLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           SLAIK+P R DIVL VPE G P G WFTLKEGSRYSL F+FQV +NIVSGLKY NTVWKT
Sbjct: 115 SLAIKSPGRDDIVLPVPETGNPPGLWFTLKEGSRYSLMFTFQVGHNIVSGLKYINTVWKT 174

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           G+KVDSTK M+GTFSPQAEPYT E+PE+TTPSG FARG+YSA+
Sbjct: 175 GIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSAR 217

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564466|ref|XP_003550475.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 154/224 (68%), Positives = 175/224 (78%), Gaps = 1/224 (0%)

Query: 1   MSLAVGVDSSSK-NMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSIS 59
           MSLA+GV S+ K NMG DD       E+           +E+ DE+   +SR MSE SI+
Sbjct: 1   MSLAIGVVSNCKSNMGFDDNKGKEVPEMQHSGKTVHVHEDESGDERGTSLSRHMSEGSIA 60

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
            TEDE++D +R+I+LGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGESLEPEVKI
Sbjct: 61  ATEDEDEDVERRIDLGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMTSVGESLEPEVKI 120

Query: 120 LSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK 179
           LSLAIK   R DIVL +PE+G P G WFTLKEGSRYSL F+FQV +NIVSGLKYTNTVWK
Sbjct: 121 LSLAIKAAGREDIVLPIPESGNPSGLWFTLKEGSRYSLMFTFQVSHNIVSGLKYTNTVWK 180

Query: 180 TGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           TGLKVDSTK M+GTFSPQAEPYT E+PE+TTPSG  ARG YSA+
Sbjct: 181 TGLKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGLLARGQYSAR 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583030|ref|XP_002532283.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223528017|gb|EEF30098.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/226 (70%), Positives = 180/226 (79%), Gaps = 10/226 (4%)

Query: 1   MSLAVGVDSSSKNMGLDD-KDKSNKSEVSGETMPKTPPNEENVDEQSG-GMSRQMSENSI 58
           MSLAV   S + NMGLDD K++  KSE S E +       E  D  +G   +RQMSE  +
Sbjct: 1   MSLAVSSSSGTSNMGLDDNKNEEEKSETSHEHL-------EEGDSAAGEKYARQMSETDL 53

Query: 59  SVTEDEEDDE-DRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEV 117
           SV E++ED+E   KIELGPQ TLKE  EKDKDDESLR+WKEQLLGSVDFES+GE+LEPEV
Sbjct: 54  SVNEEDEDEEGSHKIELGPQCTLKEHLEKDKDDESLRKWKEQLLGSVDFESIGETLEPEV 113

Query: 118 KILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
           KILSL+I +P R DIVLSVPE+G+PKGSWFTLKEGS Y+L FSFQV NNIVSGLKYTNTV
Sbjct: 114 KILSLSIISPGRSDIVLSVPEDGKPKGSWFTLKEGSHYNLMFSFQVSNNIVSGLKYTNTV 173

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           WKTG+KVDS K MLGTFSPQ EPYT  +PE+TTPSG FARGSYSAK
Sbjct: 174 WKTGVKVDSAKEMLGTFSPQPEPYTHVMPEETTPSGMFARGSYSAK 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453577|ref|XP_004144533.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449515967|ref|XP_004165019.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 177/223 (79%), Gaps = 10/223 (4%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISV 60
           MSLAVG  S+SKNMG D+    N+ E  G  +     N  N +E +  +SRQMSE S+S 
Sbjct: 1   MSLAVGAASNSKNMGFDE----NREE--GGALD----NHGNENEATEKISRQMSETSLSA 50

Query: 61  TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL 120
           TEDE DDE   IELGPQ TLKE+ EKDKDDESLRRWKEQLLG+VD E+ GE+LEPEVKIL
Sbjct: 51  TEDETDDEGSNIELGPQRTLKEELEKDKDDESLRRWKEQLLGAVDLENAGETLEPEVKIL 110

Query: 121 SLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           SL+I +P RPD+VL +PE+G PKG WFTLKEGSRYSL+FSFQV NNIV+GLKYTNTVWKT
Sbjct: 111 SLSIVSPERPDLVLPIPEDGNPKGLWFTLKEGSRYSLKFSFQVTNNIVAGLKYTNTVWKT 170

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           G+KVDS K MLGTFSPQ E YT  +PEDTTPSG FARGSYSA+
Sbjct: 171 GVKVDSAKEMLGTFSPQLETYTHVMPEDTTPSGMFARGSYSAR 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559076|ref|XP_002520560.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223540220|gb|EEF41793.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 155/213 (72%), Positives = 178/213 (83%), Gaps = 9/213 (4%)

Query: 20  DKSNKSEVS-GETMPKTPPNEENVDEQS-------GGMSRQMSENSISVT-EDEEDDEDR 70
           D++N  EVS  +T     P+    +EQ        GG+SRQMSE+SI  T ++EEDDE+R
Sbjct: 4   DENNSEEVSETKTASAKSPSAVGAEEQHRVDESKIGGLSRQMSESSIYATDQEEEDDEER 63

Query: 71  KIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP 130
           KIELGPQYTLKEQ EKDKDDESLRRWKEQLLGSVD  +VGE+L+PEVKI+SLAIK+P R 
Sbjct: 64  KIELGPQYTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLDPEVKIISLAIKSPGRD 123

Query: 131 DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMM 190
           DIVLS+PE+G PKG+WFTLKEGSRYSLQF+FQV NNIVSGLKYTNTVWKTG+KVDS K M
Sbjct: 124 DIVLSIPEDGNPKGTWFTLKEGSRYSLQFTFQVGNNIVSGLKYTNTVWKTGVKVDSAKEM 183

Query: 191 LGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           LGTFSPQAEPYT E+PE+TTPSG FARGSYSA+
Sbjct: 184 LGTFSPQAEPYTHEMPEETTPSGIFARGSYSAR 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495546|ref|XP_002278188.2| PREDICTED: rho GDP-dissociation inhibitor 1-like [Vitis vinifera]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/225 (68%), Positives = 183/225 (81%), Gaps = 8/225 (3%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVS-GETMPKTPPNEENVDEQSGGMSRQMSENSIS 59
           MSLAVGV SSSK+MG D+ + +  +++S  ++  KTP +EE  DE  G       ENS+ 
Sbjct: 1   MSLAVGVVSSSKSMGFDNNEGAANTDLSETKSTAKTPADEERGDEHGG------CENSVD 54

Query: 60  VTEDEEDDED-RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVK 118
            TE+EE++++ RKIELGPQ+TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGE+LEP+VK
Sbjct: 55  ATEEEEEEDEERKIELGPQFTLKEQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPDVK 114

Query: 119 ILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           IL LAIK+P RPDIVL +PE+G PKG WFTLKEGSRYS+ F+F+V NNIVSGL+ TN VW
Sbjct: 115 ILELAIKSPGRPDIVLPIPESGNPKGLWFTLKEGSRYSMNFAFKVSNNIVSGLRCTNVVW 174

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           KTGLKVDSTK MLGTFSPQ E YT E+PE+TTPSG FARG+YSAK
Sbjct: 175 KTGLKVDSTKEMLGTFSPQQETYTHEMPEETTPSGIFARGTYSAK 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2077462	240	SCN1 "SUPERCENTIPEDE1" [Arabid	0.928	0.870	0.609	2.2e-66
TAIR|locus:2027154	223	AT1G62450 [Arabidopsis thalian	0.857	0.865	0.589	4.5e-59
TAIR|locus:2008965	223	AT1G12070 [Arabidopsis thalian	0.817	0.825	0.631	1.9e-58
ASPGD|ASPL0000061086	197	AN0163 [Emericella nidulans (t	0.666	0.761	0.367	1e-22
RGD|1305383	200	Arhgdib "Rho, GDP dissociation	0.648	0.73	0.386	4.3e-22
UNIPROTKB|H0YGX7	195	ARHGDIB "Rho GDP-dissociation	0.648	0.748	0.395	5.5e-22
MGI|MGI:101940	200	Arhgdib "Rho, GDP dissociation	0.648	0.73	0.386	5.5e-22
UNIPROTKB|Q9TU03	200	ARHGDIB "Rho GDP-dissociation	0.648	0.73	0.393	7e-22
UNIPROTKB|F1P3P3	204	ARHGDIA "Uncharacterized prote	0.648	0.715	0.398	9e-22
UNIPROTKB|P52565	204	ARHGDIA "Rho GDP-dissociation	0.64	0.705	0.4	9e-22

TAIR|locus:2077462 SCN1 "SUPERCENTIPEDE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 131/215 (60%), Positives = 164/215 (76%)

Query:     9 SSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTXXXXXXX 68
             S +++MG DD + +NK+   G+   +   +    D+ +  +SRQMSE+S+  T       
Sbjct:     5 SGARDMGFDDNN-NNKNNKDGDD--ENSSSRTRADDDA--LSRQMSESSLCATEEEEDDD 59

Query:    69 XRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS 128
               K++LGPQYT+KE  EKDKDDESLR+WKEQLLGSVD  ++GE+L+PEV+I SLAI +P 
Sbjct:    60 S-KLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAIISPG 118

Query:   129 RPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTK 188
             RPDIVL VPENG PKG WFTLKEGS+Y+L+F+F V NNIVSGL+YTNTVWKTG+KVD  K
Sbjct:   119 RPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAK 178

Query:   189 MMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
              MLGTFSPQ EPY   +PE+TTPSG FARGSYSA+
Sbjct:   179 EMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSAR 213

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2027154 AT1G62450 [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 122/207 (58%), Positives = 150/207 (72%)

Query:    19 KDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTXXXXXXXXRKIELGPQY 78
             +D+  K E SGET  K             G+SR+ S +S+S T        +K+ELGP  
Sbjct:     4 EDEMKKGEASGETSEKM------------GLSRKNSGSSLSPTEDDEEDEDKKLELGPMI 51

Query:    79 TLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPE 138
              LKEQ E+DKDDESLRRWKEQLLG VD E VGE+ +P VKIL L I++P R ++VL++PE
Sbjct:    52 ALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKILDLTIRSPDREEMVLTIPE 111

Query:   139 NG--RPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSP 196
             +G   PKG WFT+KEGS+Y+L F+F+V NNIVSGL+Y NTVWKTG+KVDSTK MLGTFSP
Sbjct:   112 DGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLGTFSP 171

Query:   197 QAEPYTQELPEDTTPSGFFARGSYSAK 223
             QAE Y   +PE+ TPSG FARGSYSA+
Sbjct:   172 QAESYQHVMPEEMTPSGMFARGSYSAR 198

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2008965 AT1G12070 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/187 (63%), Positives = 144/187 (77%)

Query:    40 ENVDEQSG-GMSRQMSENSISVTXXXXXXXXRKIELGPQYTLKEQFEKDKDDESLRRWKE 98
             E+ +E  G G+SR+ S +S+  T        +K+ELGP   LKEQ EKDKDDESLRRWKE
Sbjct:    12 ESSEEPKGQGLSRKNSHSSMCPTDDDEEEEDKKLELGPMIALKEQLEKDKDDESLRRWKE 71

Query:    99 QLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRP--KGSWFTLKEGSRYS 156
             QLLGSVD E VGE+ +P VKIL+L I++P R D+VL++PENG+P  KG WFTLKEGS+Y+
Sbjct:    72 QLLGSVDLEEVGETPDPLVKILTLTIRSPDREDMVLTIPENGKPASKGPWFTLKEGSKYT 131

Query:   157 LQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFA 216
             L F+F+V NNIVSGL+Y+NTVWKTG+KV S K MLGTFSPQAEPYT  + E+T PSG   
Sbjct:   132 LIFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLGTFSPQAEPYTHVMFEETAPSGLLV 191

Query:   217 RGSYSAK 223
             RGSYS K
Sbjct:   192 RGSYSVK 198

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

ASPGD|ASPL0000061086 AN0163 [Emericella nidulans (taxid:162425)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 58/158 (36%), Positives = 96/158 (60%)

Query:    73 ELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL-SLAIKTPSRPD 131
             ++G + T+ E  E DK+DESL RWK  L G    E  G+  +P   I+ +LA++   RPD
Sbjct:    17 KVGEKKTIAEYNELDKNDESLNRWKASL-GLNTGEPTGDPNDPRTCIIKTLALEVQGRPD 75

Query:   132 IVLSVPENG---RPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTK 188
             +V+ V   G   + K   FT+KEG+ + ++ +F+V ++++SGLKY   V + G++V   +
Sbjct:    76 VVIDVSAPGALEKLKDKPFTIKEGAHFRIKVTFEVHHDVLSGLKYLQVVKRKGIRVSKDQ 135

Query:   189 MMLGTFSP--QAEP-YTQELPEDTTPSGFFARGSYSAK 223
              MLG+++P    +P Y ++  E+  PSG  ARG Y+A+
Sbjct:   136 EMLGSYAPCTTGKPIYEKKFQEEEAPSGMMARGHYNAE 173

GO:0007015 "actin filament organization" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0032889 "regulation of vacuole fusion, non-autophagic" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

RGD|1305383 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 58/150 (38%), Positives = 84/150 (56%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG V    V +   P V +  L++   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNVTVTRLSLVCDSAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  + +  K   F LKEG  Y ++ +F+V  +IVSGLKY    ++ G+KVD    M+G+
Sbjct:    85 DLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQTYRNGMKVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
             + P+ E Y    P +  P G  ARG+Y  K
Sbjct:   145 YGPRPEEYEFLTPVEEAPKGMLARGTYHNK 174

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|H0YGX7 ARHGDIB "Rho GDP-dissociation inhibitor 2" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 59/149 (39%), Positives = 82/149 (55%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct:    23 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 80

Query:   135 SVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTF 194
              + +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G++
Sbjct:    81 DLTDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSY 140

Query:   195 SPQAEPYTQELPEDTTPSGFFARGSYSAK 223
              P+ E Y    P +  P G  ARG+Y  K
Sbjct:   141 GPRPEEYEFLTPVEEAPKGMLARGTYHNK 169

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:101940 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Mus musculus (taxid:10090)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 58/150 (38%), Positives = 84/150 (56%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG V    V +   P V +  L++   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNVTVTRLSLVCDSAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  +    K   F LKEG  Y ++ +F+V  +IVSGLKY    ++TG++VD    M+G+
Sbjct:    85 DLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHTYRTGMRVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
             + P+ E Y    P +  P G  ARG+Y  K
Sbjct:   145 YGPRPEEYEFLTPVEEAPKGMLARGTYHNK 174

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9TU03 ARHGDIB "Rho GDP-dissociation inhibitor 2" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 59/150 (39%), Positives = 83/150 (55%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTVTRLTLVCESAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  +    K   F LKEG  Y ++ +F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct:    85 DLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQHTYRTGVKVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
             + P+ E Y    P +  P G  ARG+Y  K
Sbjct:   145 YGPRPEEYEFLTPIEEAPKGMLARGTYHNK 174

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|F1P3P3 ARHGDIA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 59/148 (39%), Positives = 86/148 (58%)

Query:    77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
             Q +++E  E DKDDESLR++KE LLG+V   +   +    V  L+L   T   P ++ L+
Sbjct:    32 QKSIQEIQELDKDDESLRKYKEALLGAVTVTADPNAPNVVVTKLTLVCTTAPGPLELDLT 91

Query:   136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
                    K + F LKEG  Y ++ SF+V   IVSGLKY    ++ G+K+D T+ M+G++ 
Sbjct:    92 GDLESYKKQA-FVLKEGVEYRIKISFRVNREIVSGLKYIQHTFRKGVKIDKTEYMVGSYG 150

Query:   196 PQAEPYTQELPEDTTPSGFFARGSYSAK 223
             P+AE Y    P +  P G  ARGSY+ K
Sbjct:   151 PRAEEYEFLTPMEEAPKGMLARGSYNIK 178

GO:0005737 "cytoplasm" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

UNIPROTKB|P52565 ARHGDIA "Rho GDP-dissociation inhibitor 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 60/150 (40%), Positives = 85/150 (56%)

Query:    77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
             Q +++E  E DKDDESLR++KE LLG V   +  +   P V +  L +   S P   ++ 
Sbjct:    32 QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 89

Query:   134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
             L+       K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G+
Sbjct:    90 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148

Query:   194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
             + P+AE Y    P +  P G  ARGSYS K
Sbjct:   149 YGPRAEEYEFLTPVEEAPKGMLARGSYSIK 178

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0007162 "negative regulation of cell adhesion" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050770 "regulation of axonogenesis" evidence=TAS

GO:0050771 "negative regulation of axonogenesis" evidence=TAS

GO:0050772 "positive regulation of axonogenesis" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFC6	GDIR_ARATH	No assigned EC number	0.7272	0.7777	0.7291	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam02115	200	pfam02115, Rho_GDI, RHO protein GDP dissociation i	3e-61

>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor

 Score =  189 bits (483), Expect = 3e-61
 Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 3/163 (1%)

Query: 62  EDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILS 121
           EDEED++    +  PQ +LKE  E DK+DESLR++KE+LLG V    + +  EP V + S
Sbjct: 17  EDEEDEDSVNYKPPPQKSLKEIQELDKEDESLRKYKEKLLGPV--PVLVDPKEPNVVVTS 74

Query: 122 LAIKTPSRPDIVLSVP-ENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           L + +   P I L +  +  + K   F LKEGS Y L+ SF+V+  IVSGLKY    ++ 
Sbjct: 75  LTLLSEGAPPIELDLTGDLKQLKSQLFVLKEGSEYRLKISFKVQREIVSGLKYVQHTYRA 134

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           GL+VD TK M+G++ P+AE Y    PE+  PSG  ARGSYSAK
Sbjct: 135 GLRVDKTKYMVGSYGPRAEEYEYLTPEEEAPSGALARGSYSAK 177

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG3205	200	consensus Rho GDP-dissociation inhibitor [Signal t	100.0
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	100.0

>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-71  Score=475.01  Aligned_cols=175  Identities=54%  Similarity=0.868  Sum_probs=168.7

Q ss_pred             ccccccccCCCCCCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCC
Q 027295           49 MSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS  128 (225)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~eg  128 (225)
                      ++|+++.|+.+.++++|++.+.+|++||+|||+||+++|+|||||||||++|||.++  .+++|++|+|+|.+|+|+|+|
T Consensus         1 ms~~~~~s~~~~~~~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~   78 (200)
T KOG3205|consen    1 MSEKESVSSDHPTEEDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEG   78 (200)
T ss_pred             CCccccccccCCCcccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCC
Confidence            468889999999988888888899999999999999999999999999999999988  578999999999999999999


Q ss_pred             CCCeEEeCCCCCCC--CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCC
Q 027295          129 RPDIVLSVPENGRP--KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP  206 (225)
Q Consensus       129 r~di~ldL~~~~~~--k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p  206 (225)
                      ||||+|+|++++.+  ++++|+||||+.|+|+|.|+|||||||||||+|+|||.||+|||+.+|||||+|++++|+|.+|
T Consensus        79 r~pi~ldlt~~~~~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p  158 (200)
T KOG3205|consen   79 RPPIVLDLTGDLSPELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTP  158 (200)
T ss_pred             CCCeEEeCCCCccccccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCC
Confidence            99999999999887  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccceeeeeeeeeeC
Q 027295          207 EDTTPSGFFARGSYSAKIC  225 (225)
Q Consensus       207 ~EEAPSGmLARG~Y~akS~  225 (225)
                      +|||||||||||+|+|+|+
T Consensus       159 ~eeAPsGmlaRG~Ys~~sk  177 (200)
T KOG3205|consen  159 EEEAPSGMLARGSYSAKSK  177 (200)
T ss_pred             cccCCccceeecceeeeeE
Confidence            9999999999999999985

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=100.00  E-value=3.3e-68  Score=459.87  Aligned_cols=168  Identities=46%  Similarity=0.770  Sum_probs=130.5

Q ss_pred             cCCCCCCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCCCeEEe
Q 027295           56 NSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLS  135 (225)
Q Consensus        56 ~~~~~~~~~~~~~~~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~di~ld  135 (225)
                      .+.+.++|++++.+.+|++|++|||+||++||++|||||||||||||.++  .++++++|+|+|++|+|+|+|||||+|+
T Consensus        11 ~~~~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~ld   88 (200)
T PF02115_consen   11 EEQEEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVLD   88 (200)
T ss_dssp             CCCCTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEEE
T ss_pred             cccccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeeee
Confidence            34455667777777899999999999999999999999999999999887  5778899999999999999999999999


Q ss_pred             CCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCCCCCccc
Q 027295          136 VPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGF  214 (225)
Q Consensus       136 L~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~EEAPSGm  214 (225)
                      |+++.. +++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|||||+|++++|+|+||+|+|||||
T Consensus        89 l~~~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~  168 (200)
T PF02115_consen   89 LTGDLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGM  168 (200)
T ss_dssp             TTS-GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BST
T ss_pred             ccCccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCce
Confidence            998744 4899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeeC
Q 027295          215 FARGSYSAKIC  225 (225)
Q Consensus       215 LARG~Y~akS~  225 (225)
                      ||||+|+|+|+
T Consensus       169 laRG~Y~aks~  179 (200)
T PF02115_consen  169 LARGSYTAKSK  179 (200)
T ss_dssp             TT-EEEEEEEE
T ss_pred             eEeeeeeEEEE
Confidence            99999999985

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
1cc0_E	204	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-21
1fst_A	182	Crystal Structure Of Truncated Human Rhogdi Triple		3e-21
1doa_B	219	Structure Of The Rho Family Gtp-Binding Protein Cdc		6e-21
4f38_B	204	Crystal Structure Of Geranylgeranylated Rhoa In Com		7e-21
1ds6_B	180	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-20
2jhw_A	138	Crystal Structure Of Rhogdi E155a, E157a Mutant Len		2e-15
1ft3_A	139	Crystal Structure Of Truncated Rhogdi K141a Mutant		2e-15
2jhz_A	138	Crystal Structure Of Rhogdi E155s, E157s Mutant Len		2e-15
2jhx_A	138	Crystal Structure Of Rhogdi E155h, E157h Mutant Len		2e-15
2jht_A	138	Crystal Structure Of Rhogdi K135t,K138t,K141t Mutan		2e-15
1qvy_A	139	Crystal Structure Of Rhogdi K(199,200)r Double Muta		3e-15
1ft0_A	139	Crystal Structure Of Truncated Human Rhogdi K113a M		4e-15
1fso_A	139	Crystal Structure Of Truncated Human Rhogdi Quadrup		6e-15
1ajw_A	145	Structure Of Rhogdi: A C-Terminal Binding Domain Ta		6e-15
2jhs_A	138	Crystal Structure Of Rhogdi K135h,K138h,K141h Mutan		7e-15
1kmt_A	141	Crystal Structure Of Rhogdi Glu(154,155)ala Mutant		1e-14
2jhu_A	138	Crystal Structure Of Rhogdi E154a,E155a Mutant Leng		1e-14
2bxw_A	141	Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mut		2e-14
2ji0_A	138	Crystal Structure Of Rhogdi K138y, K141y Mutant Len		2e-14
1rho_A	145	Structure Of Rho Guanine Nucleotide Dissociation In		8e-14

>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 204

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
           Q +++E  E DKDDESLR++KE LLG V   +  +   P V +  L +   S P   ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
           L+       K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G+
Sbjct: 90  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           + P+AE Y    P +  P G  ARGSYS K
Sbjct: 149 YGPRAEEYEFLTPVEEAPKGMLARGSYSIK 178

>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant Length = 182

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
           Q +++E  E DKDDESLR++KE LLG V   +  +   P V +  L +   S P   ++ 
Sbjct: 10  QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
           L+       K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D+T  M+G+
Sbjct: 68  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGS 126
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           + P+AE Y    P +  P G  ARGSYS K
Sbjct: 127 YGPRAEEYEFLTPVEEAPKGMLARGSYSIK 156

>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 219

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
           Q +++E  E DKDDESLR++KE LLG V   +        V  L+L   T   P ++ L+
Sbjct: 47  QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 106
Query: 136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
                  K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ 
Sbjct: 107 GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 165
Query: 196 PQAEPYTQELPEDTTPSGFFARGSYSAK 223
           P+AE Y    P +  P G  ARGSY+ K
Sbjct: 166 PRAEEYEFLTPMEEAPKGMLARGSYNIK 193

>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 204

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
           Q +++E  E DKDDESLR++KE LLG V   +        V  L+L   T   P ++ L+
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 91
Query: 136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
                  K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ 
Sbjct: 92  GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 150
Query: 196 PQAEPYTQELPEDTTPSGFFARGSYSAK 223
           P+AE Y    P +  P G  ARGSY+ K
Sbjct: 151 PRAEEYEFLTPMEEAPKGMLARGSYNIK 178

>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex Length = 180

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 76  PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
           PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct: 7   PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 64
Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
            +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct: 65  DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 124
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           + P+ E Y    P +  P G  ARG+Y  K
Sbjct: 125 YGPRPEEYEFLTPVEEAPKGMLARGTYHNK 154

>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant Length = 138

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 98  VEEAPKGMLARGSYSIK 114

>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant Length = 139

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D+T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 97  VEEAPKGMLARGSYSIK 113

>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant Length = 138

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y+   P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 98  VEEAPKGMLARGSYSIK 114

>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant Length = 138

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 98  VEEAPKGMLARGSYSIK 114

>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant Length = 138

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++TG+ +D+T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 98  VEEAPKGMLARGSYSIK 114

>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant Length = 139

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 97  VEEAPKGMLARGSYSIK 113

>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant Length = 139

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y +  SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 97  VEEAPKGMLARGSYSIK 113

>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple Mutant Length = 139

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D+T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 97  VEEAPKGMLARGSYSIK 113

>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20 Structures Length = 145

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 43  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 102
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSY+ K
Sbjct: 103 MEEAPKGMLARGSYNIK 119

>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant Length = 138

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 98  VEEAPKGMLARGSYSIK 114

>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant Length = 141

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+A  Y    P
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 98
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 99  VEEAPKGMLARGSYSIK 115

>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant Length = 138

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+A  Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 98  VEEAPKGMLARGSYSIK 114

>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant Length = 141

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTP 98
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 99  VEEAPKGMLARGSYSIK 115

>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant Length = 138

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 98  VEEAPKGMLARGSYSIK 114

>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor Length = 145

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 46/77 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG KY    ++ G+K+D T   +G++ P+AE Y    P
Sbjct: 44  FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 207 EDTTPSGFFARGSYSAK 223
            +  P G  ARGSYS K
Sbjct: 104 VEEAPKGXLARGSYSIK 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	2e-54
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	3e-54
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	2e-41

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Length = 219

 Score =  172 bits (438), Expect = 2e-54
 Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 7/184 (3%)

Query: 47  GGMSRQMSENSISVT-------EDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQ 99
           GG+   M+E   +         E+EED+     +   Q +++E  E DKDDESLR++KE 
Sbjct: 10  GGILGLMAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEA 69

Query: 100 LLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQF 159
           LLG V   +        V  L+L   T   P  +    +    K   F LKEG  Y ++ 
Sbjct: 70  LLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKI 129

Query: 160 SFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGS 219
           SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGS
Sbjct: 130 SFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGS 189

Query: 220 YSAK 223
           Y+ K
Sbjct: 190 YNIK 193

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Length = 180

 Score =  170 bits (433), Expect = 3e-54
 Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 4/151 (2%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IV 133
            PQ +LKE  E DKDDESL ++K+ LLG      V +   P V +  L +   S P  I 
Sbjct: 6   PPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPIT 63

Query: 134 LSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG 192
           + +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G
Sbjct: 64  MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVG 123

Query: 193 TFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           ++ P+ E Y    P +  P G  ARG+Y  K
Sbjct: 124 SYGPRPEEYEFLTPVEEAPKGMLARGTYHNK 154

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Length = 141

 Score =  136 bits (345), Expect = 2e-41
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)

Query: 112 SLEPEVKILSLAIKTPSRPD-IVLSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVS 169
           ++ P V +  L +   S P  + L +  +    K   F LKEG  Y ++ SF+V   IVS
Sbjct: 2   AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVS 61

Query: 170 GLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           G+KY    ++ G+K+D T  M+G++ P+A  Y    P +  P G  ARGSYS K
Sbjct: 62  GMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIK 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	100.0
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	100.0
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	100.0

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=100.00  E-value=2.7e-68  Score=464.16  Aligned_cols=163  Identities=37%  Similarity=0.625  Sum_probs=152.2

Q ss_pred             CCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCC-CeEEeCCCC
Q 027295           61 TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLSVPEN  139 (225)
Q Consensus        61 ~~~~~~~~~~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~-di~ldL~~~  139 (225)
                      .|+++++.+.+|++|++|||+||++||+||||||||||||||.++  .+.++++|+|+|++|+|+|+||| +|+|+|+++
T Consensus        31 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~  108 (219)
T 1doa_B           31 AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGD  108 (219)
T ss_dssp             SSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSC
T ss_pred             ccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCC
Confidence            445556677899999999999999999999999999999999876  46788999999999999999995 499999877


Q ss_pred             CC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCCCCCccceeee
Q 027295          140 GR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARG  218 (225)
Q Consensus       140 ~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~EEAPSGmLARG  218 (225)
                      .. +|+.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||
T Consensus       109 ~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG  188 (219)
T 1doa_B          109 LESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARG  188 (219)
T ss_dssp             CGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCS
T ss_pred             hhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeee
Confidence            44 39999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeC
Q 027295          219 SYSAKIC  225 (225)
Q Consensus       219 ~Y~akS~  225 (225)
                      +|+|+|+
T Consensus       189 ~Y~akSk  195 (219)
T 1doa_B          189 SYNIKSR  195 (219)
T ss_dssp             EEEEEEE
T ss_pred             eeeeeEE
Confidence            9999984

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=100.00  E-value=1.3e-67  Score=448.73  Aligned_cols=154  Identities=37%  Similarity=0.599  Sum_probs=146.5

Q ss_pred             cCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCC-CCeEEeCCCCCC-CCCceE
Q 027295           70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSR-PDIVLSVPENGR-PKGSWF  147 (225)
Q Consensus        70 ~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr-~di~ldL~~~~~-~k~~~F  147 (225)
                      ++|++|++|||+||++||+||||||||||||||.++  ++++|++|+|+|++|+|+++|| +||+++|+++.. +++.+|
T Consensus         1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f   78 (180)
T 1ds6_B            1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (180)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence            369999999999999999999999999999999876  5778899999999999999999 889999988743 389999


Q ss_pred             EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCCCCCccceeeeeeeeeeC
Q 027295          148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC  225 (225)
Q Consensus       148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~EEAPSGmLARG~Y~akS~  225 (225)
                      +|||||.|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||+|+|+|+
T Consensus        79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~sk  156 (180)
T 1ds6_B           79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSF  156 (180)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999984

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=100.00  E-value=1.7e-49  Score=326.34  Aligned_cols=114  Identities=36%  Similarity=0.653  Sum_probs=108.1

Q ss_pred             CCCCcEEEEEEEEEcCCCC-CeEEeCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc
Q 027295          112 SLEPEVKILSLAIKTPSRP-DIVLSVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM  189 (225)
Q Consensus       112 ~~~P~V~I~~L~L~~egr~-di~ldL~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~  189 (225)
                      |++|+|+|++|+|+++||| ||+|||+++.. +|+.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++
T Consensus         2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~   81 (141)
T 1kmt_A            2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY   81 (141)
T ss_dssp             CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE
Confidence            4678999999999999976 69999997643 499999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCeeecCCCCCCCccceeeeeeeeeeC
Q 027295          190 MLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC  225 (225)
Q Consensus       190 MlGSY~P~~e~Y~~~~p~EEAPSGmLARG~Y~akS~  225 (225)
                      |||||+|++++|+|+||+|||||||||||+|+|+|+
T Consensus        82 mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~  117 (141)
T 1kmt_A           82 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSR  117 (141)
T ss_dssp             EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             eeeccCCCCCcceecCCCccCCceeEEeeeeeeeEE
Confidence            999999999999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1ds6b_	179	b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, Rh	7e-64
d1kmta_	138	b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, Rh	1e-46

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (494), Expect = 7e-64
 Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 4/151 (2%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IV 133
            PQ +LKE  E DKDDESL ++K+ LLG      V +   P V +  L +   S P  I 
Sbjct: 6   PPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPIT 63

Query: 134 LSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG 192
           + +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G
Sbjct: 64  MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVG 123

Query: 193 TFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           ++ P+ E Y    P +  P G  ARG+Y  K
Sbjct: 124 SYGPRPEEYEFLTPVEEAPKGMLARGTYHNK 154

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 1e-46
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)

Query: 112 SLEPEVKILSLAIKTPSRPD-IVLSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVS 169
           ++ P V +  L +   S P  + L +  +    K   F LKEG  Y ++ SF+V   IVS
Sbjct: 1   AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVS 60

Query: 170 GLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
           G+KY    ++ G+K+D T  M+G++ P+A  Y    P +  P G  ARGSYS K
Sbjct: 61  GMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIK 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-67  Score=442.25  Aligned_cols=154  Identities=38%  Similarity=0.626  Sum_probs=145.3

Q ss_pred             cCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCCC-eEEeCCCCCCC-CCceE
Q 027295           70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVLSVPENGRP-KGSWF  147 (225)
Q Consensus        70 ~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~d-i~ldL~~~~~~-k~~~F  147 (225)
                      .+|++||+|||+||++||||||||+||||+|||.++  .++++++|+|+|++|+|+|+++|+ |+|||+++... ++.+|
T Consensus         1 ~nyk~~~~ksl~E~~~~D~~DESL~kwKe~Llg~~~--~~~~~~~p~V~i~~l~l~~~~~p~~i~~dl~~~~~~lk~~~f   78 (179)
T d1ds6b_           1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (179)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCCCCccCHHHHHhcCcChhHHHHHHHHhcCCCc--ccCCCCCCcEEEEEeEEEcCCCCCCeEecCCCccccccCCCE
Confidence            379999999999999999999999999999999765  577889999999999999999874 99999876443 88999


Q ss_pred             EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCCCCCccceeeeeeeeeeC
Q 027295          148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC  225 (225)
Q Consensus       148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~EEAPSGmLARG~Y~akS~  225 (225)
                      +|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|||||+|++|+|+|+||+|||||||||||+|+|+|+
T Consensus        79 ~IKEGs~Y~i~i~F~V~~eivsGLkY~q~vkr~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~  156 (179)
T d1ds6b_          79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSF  156 (179)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             EecCCCEEEEEEEEEEecccccCcEEEEEEEECCEEEcceeEeeeccCCCCCceeEeCCCccCCceeEEeecceEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999984

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-48  Score=315.67  Aligned_cols=113  Identities=36%  Similarity=0.656  Sum_probs=107.7

Q ss_pred             CCCcEEEEEEEEEcCCCC-CeEEeCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEecccccc
Q 027295          113 LEPEVKILSLAIKTPSRP-DIVLSVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMM  190 (225)
Q Consensus       113 ~~P~V~I~~L~L~~egr~-di~ldL~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~M  190 (225)
                      ..|+|+|++|+|+|+++| +|+|||+++.. +++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|
T Consensus         2 ~~P~V~v~~l~l~~~~~P~~i~ldl~~~l~~lk~~~f~IKEGs~Y~i~i~F~V~~eivsGLky~q~v~r~Gi~Vdk~~~m   81 (138)
T d1kmta_           2 MVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYM   81 (138)
T ss_dssp             BCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCceEEEEEEEEcCCCCCCEEEcCCCchhHhcCCCEEecCCCEEEEEEEEEEccccccCcEEEEEEEECCEEEcceeEe
Confidence            358999999999999997 59999998744 4999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCeeecCCCCCCCccceeeeeeeeeeC
Q 027295          191 LGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC  225 (225)
Q Consensus       191 lGSY~P~~e~Y~~~~p~EEAPSGmLARG~Y~akS~  225 (225)
                      ||||+|++++|+|+||+|||||||||||+|+|+|+
T Consensus        82 vGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~  116 (138)
T d1kmta_          82 VGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSR  116 (138)
T ss_dssp             EEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             eeccCCCCCcEEEeCCCccCCceEEEeeeeeEEEE
Confidence            99999999999999999999999999999999984