Citrus Sinensis ID: 027302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRYPC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFnlqeddsfgtaAVSEAdhnfskkgvPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYEtgslqdltrypc
Flexible Loop (DISEMBL)
megsdpkkhLLTLIrdfaseksqgerrvvglKKRIEKLRleleaenfereeakqLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEAdhnfskkgvPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEMIAyetgslqdltrypc
Low Complexity Region (SEG)
MEGSDPKKHLLTLIRDFASEKSQGERRVVGlkkrieklrleleaenfereeaKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAReeelyqeeeKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRYPC
Disordered region (IsUnstruct)
*************************************************************ELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGT*****************VALKTL***I**********************QVQLELIDLERKVSLMEMIAYETG**********
Disordered Region (DISOPRED)
**********LTLI************************************************************************************************************************************************************************************************************D*TRYPC
Disordered Region (DISEMBL)
MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRYPC
Disordered Region (DISPRO)
*******KHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQE*******************GVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRYPC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGSDPKKHLLTLIRDFASExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSLMEMIAYETGSLQDLTRYPC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
255552764	216	conserved hypothetical protein [Ricinus	0.96	1.0	0.544	1e-54
42565264	292	uncharacterized protein [Arabidopsis tha	0.977	0.753	0.524	9e-53
297815134	269	hypothetical protein ARALYDRAFT_484614 [	0.977	0.817	0.528	2e-51
363806888	220	uncharacterized protein LOC100815720 [Gl	0.937	0.959	0.509	5e-46
356519023	222	PREDICTED: uncharacterized protein LOC10	0.92	0.932	0.495	2e-45
9294572	244	unnamed protein product [Arabidopsis tha	0.973	0.897	0.468	5e-44
224060018	117	predicted protein [Populus trichocarpa]	0.453	0.871	0.656	4e-29
9294570	217	unnamed protein product [Arabidopsis tha	0.804	0.834	0.428	3e-27
224140891	101	predicted protein [Populus trichocarpa]	0.44	0.980	0.588	5e-24
296087754	115	unnamed protein product [Vitis vinifera]	0.497	0.973	0.547	7e-24

>gi|255552764|ref|XP_002517425.1| conserved hypothetical protein [Ricinus communis] gi|223543436|gb|EEF44967.1| conserved hypothetical protein [Ricinus communis]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 158/224 (70%), Gaps = 8/224 (3%)

Query: 1   MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60
           M G D KK LLTLIRD ASEKSQGERRV+GLKKR+ ++R E+E EN E E +K+LKETIE
Sbjct: 1   MAGIDQKKQLLTLIRDCASEKSQGERRVIGLKKRLVEIRTEVETENAELEASKRLKETIE 60

Query: 61  QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELN 120
           Q+LKG+EVELALN    Q+LE+R+  I +EIS++G+EV+ LK E+ + RD FI QM +L 
Sbjct: 61  QQLKGFEVELALNVAFIQSLEARVFQIQDEISSIGSEVDGLKNEERTSRDEFIEQMVKLG 120

Query: 121 DKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREE 180
            +IR F + IA   Q+++S GT A +E           E   + L D + ++VSQT +EE
Sbjct: 121 TRIRRFQEKIASEFQKENSIGTTAETENK--------VESDSRILADMVDQIVSQTTKEE 172

Query: 181 ELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRYP 224
           + Y  E+ IQKQVQ E +DL+ KVSLM MI  ET +LQDLTRYP
Sbjct: 173 QEYLVEQIIQKQVQQEYVDLQEKVSLMGMIMKETKALQDLTRYP 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565264|ref|NP_189478.2| uncharacterized protein [Arabidopsis thaliana] gi|332643917|gb|AEE77438.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 161/225 (71%), Gaps = 5/225 (2%)

Query: 1   MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60
           M G D +K LL+LIRDF SE+S+GE+RVVGLKKRIE L+ E+EA N E E+AK++KE  E
Sbjct: 1   MAGIDTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEILQSEVEAANSEVEKAKRIKEVAE 60

Query: 61  QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELN 120
           +EL GYEVEL+LN+   Q+LE+RISL+ +E++T+G+EV+ALK ++  LRD FI QM ELN
Sbjct: 61  EELNGYEVELSLNDATIQSLEARISLLQDEVTTIGSEVDALKNKEGLLRDQFISQMEELN 120

Query: 121 DKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREE 180
            +IR F K++  +L  DD  G  A  +A  + S        L+ ++  ++EV SQ A+EE
Sbjct: 121 KEIREFQKTVDSSLSSDDGIGITANVKASEDGSG-----ADLEAIKGMLSEVNSQLAKEE 175

Query: 181 ELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRYPC 225
           E Y  E+KIQ+Q+Q EL D E+K+SLME I  +T S+Q LTRYP 
Sbjct: 176 EGYLAEQKIQEQLQKELDDYEKKMSLMEAITDKTNSVQVLTRYPL 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815134|ref|XP_002875450.1| hypothetical protein ARALYDRAFT_484614 [Arabidopsis lyrata subsp. lyrata] gi|297321288|gb|EFH51709.1| hypothetical protein ARALYDRAFT_484614 [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/225 (52%), Positives = 158/225 (70%), Gaps = 5/225 (2%)

Query: 1   MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60
           M G D +K LL+LIRDF SE+S+GE+RVVGLKKRIE L+ E+EA N E E AK++KE  E
Sbjct: 1   MAGIDTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEILQSEIEAANSEVENAKRIKEVAE 60

Query: 61  QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELN 120
           +EL GYEVEL+LN+   Q+LE+RISL+ +E+STVG+EV+ALK ++  LRD FI QM ELN
Sbjct: 61  EELNGYEVELSLNDATIQSLEARISLLQDEVSTVGSEVDALKNKEGFLRDQFISQMEELN 120

Query: 121 DKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREE 180
            +IR F K++      DDS G     +A  + S  G    A+K +   +++V SQ A+EE
Sbjct: 121 KEIREFQKTVDSTFGNDDSTGITPNVKAFEDSS--GADSEAIKGM---LSDVSSQLAKEE 175

Query: 181 ELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRYPC 225
           E Y  E+KIQ+Q+Q EL D E+K+SLME I  +T S+Q L RYP 
Sbjct: 176 EGYLAEKKIQEQLQKELDDYEKKMSLMEAITDKTNSVQVLARYPL 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806888|ref|NP_001242299.1| uncharacterized protein LOC100815720 [Glycine max] gi|255633752|gb|ACU17236.1| unknown [Glycine max]

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 145/216 (67%), Gaps = 5/216 (2%)

Query: 3   GSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQE 62
           GSD +K L +LIR+FA+EKSQGERRVV L+K+IEKL+ EL   N E E AK+ KE +EQ+
Sbjct: 9   GSDSQKQLWSLIRNFAAEKSQGERRVVNLRKQIEKLKSELSEANAELENAKRCKELVEQD 68

Query: 63  LKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDK 122
           LKG+EV+L L  ++ Q LE+R+SLI N IS VG+++E LK E+  LR+ F   M  +N K
Sbjct: 69  LKGFEVQLMLTESSAQTLEARVSLIQNHISAVGSDLETLKSEEADLREQFFHNMLHMNGK 128

Query: 123 IRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEEL 182
           IR F +SI       D   TA++ +A     K+   EVA+  LE  + EVVSQ A+E+E 
Sbjct: 129 IRKFQESIITC----DIDSTASI-DASQVTMKENDAEVAIMALESTLLEVVSQIAKEDEE 183

Query: 183 YQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQ 218
           YQ E+K  + VQ +LID E+KVSLM MI  ET  LQ
Sbjct: 184 YQAEQKNYENVQQQLIDCEKKVSLMSMIVMETKELQ 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519023|ref|XP_003528174.1| PREDICTED: uncharacterized protein LOC100797493 [Glycine max]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 141/212 (66%), Gaps = 5/212 (2%)

Query: 3   GSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQE 62
           GSD +K LL+LIRDFA+EKSQGERRVV L+K+IEKL  EL   N E E AK+ KE +EQ+
Sbjct: 7   GSDSQKQLLSLIRDFAAEKSQGERRVVNLRKQIEKLTSELSEANAELENAKRYKELVEQD 66

Query: 63  LKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDK 122
           L+G+EV+L L  ++ Q L +R+SLI   IS V ++ E L+ E+ +LR+ F   +  +N K
Sbjct: 67  LRGFEVQLMLTESSVQTLAARVSLIQGHISAVESDFETLRSEEAALREQFFHNILHMNGK 126

Query: 123 IRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEEL 182
           IR F +SI          G+ A  +A     K+   EVAL+ LE  + EV+SQTA+E++ 
Sbjct: 127 IRKFQESIITC-----DIGSTASIDASQVIMKENDAEVALRALESTLLEVISQTAKEDQE 181

Query: 183 YQEEEKIQKQVQLELIDLERKVSLMEMIAYET 214
           YQ E+KI + VQ +LID ERKVSLM MI  ET
Sbjct: 182 YQAEQKIYENVQQQLIDCERKVSLMSMIVMET 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294572|dbj|BAB02853.1| unnamed protein product [Arabidopsis thaliana]

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/241 (46%), Positives = 158/241 (65%), Gaps = 22/241 (9%)

Query: 1   MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60
           M G D +K LL+LIRDF SE+S+GE+RVVGLKKRIE L+ E+EA N E E+AK++KE  E
Sbjct: 1   MAGIDTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEILQSEVEAANSEVEKAKRIKEVAE 60

Query: 61  QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKK---------EQE----- 106
           +EL GYEVEL+LN+   Q+LE+RISL+ +E++T+G+EV+ALK+         EQ      
Sbjct: 61  EELNGYEVELSLNDATIQSLEARISLLQDEVTTIGSEVDALKRSVYKPNGRTEQGDKVIF 120

Query: 107 -SLRDGFIVQMFELNDKI--RTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALK 163
            SLR   +  +  L+  +  R F K++  +L  DD  G  A  +A  + S        L+
Sbjct: 121 YSLRYHLVPGVTHLSCLVGNREFQKTVDSSLSSDDGIGITANVKASEDGSG-----ADLE 175

Query: 164 TLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRY 223
            ++  ++EV SQ A+EEE Y  E+KIQ+Q+Q EL D E+K+SLME I  +T S+Q LTRY
Sbjct: 176 AIKGMLSEVNSQLAKEEEGYLAEQKIQEQLQKELDDYEKKMSLMEAITDKTNSVQVLTRY 235

Query: 224 P 224
           P
Sbjct: 236 P 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060018|ref|XP_002300029.1| predicted protein [Populus trichocarpa] gi|222847287|gb|EEE84834.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 81/102 (79%)

Query: 1   MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60
           M  +DP++ LLTLIRDFASEKSQGERRVVGLK RI +L  +L+A N E EE K+ KET E
Sbjct: 1   MAATDPQRQLLTLIRDFASEKSQGERRVVGLKNRIVELGCQLDAANAEMEEVKRFKETTE 60

Query: 61  QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALK 102
            ELKGYE +LA N+ + Q LE+RISLI +EIS+VG+EVE LK
Sbjct: 61  LELKGYEFQLAFNDVSIQTLEARISLIQDEISSVGSEVEGLK 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294570|dbj|BAB02851.1| unnamed protein product [Arabidopsis thaliana]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/210 (42%), Positives = 132/210 (62%), Gaps = 29/210 (13%)

Query: 1   MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60
           M G D +K LL+LIRDF SE+S+GE+RVVGLKKRIE L+ E+EA N E E AK++KE  E
Sbjct: 1   MAGIDTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEILQSEVEAANSEVEHAKRIKEVAE 60

Query: 61  QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKK---------EQE----- 106
           +EL GYEVEL+LN++  Q+LE       +E++T+G EV+ALK+         EQ      
Sbjct: 61  EELNGYEVELSLNDSTIQSLE-------DEVTTIGNEVDALKRSVYKPNGRTEQGDKVIF 113

Query: 107 -SLRDGFIVQMFELNDKI--RTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALK 163
            SLR   ++ +  L+  +  R F K++  +L ++DS G  A  +A  + S   +   A+K
Sbjct: 114 YSLRFHLMMLLHILSCLVGKREFQKTVDSSLADEDSTGITANIKAFEDCSGDDLE--AIK 171

Query: 164 TLEDKIAEVVSQTAREEELYQEEEKIQKQV 193
            L   +++V SQ A+EEE Y  E+K+Q+Q+
Sbjct: 172 NL---LSDVHSQLAKEEEGYLAEQKMQEQI 198

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140891|ref|XP_002323811.1| predicted protein [Populus trichocarpa] gi|222866813|gb|EEF03944.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 81/102 (79%), Gaps = 3/102 (2%)

Query: 1   MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60
           M  +DP++ LLTLIR+FA+EKSQGERRV+GL+KRI+++  E++  N E EE K +KET E
Sbjct: 1   MAFTDPQRQLLTLIREFATEKSQGERRVIGLEKRIQEVGCEVDVANGEMEEVKCIKETTE 60

Query: 61  QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALK 102
           QELKGYE++L LN  + Q LE+RIS   +EIS+VG++VE LK
Sbjct: 61  QELKGYELQLFLNEASIQTLEARIS---HEISSVGSQVEGLK 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087754|emb|CBI35010.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 5/117 (4%)

Query: 1   MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60
           M G+D +K LLTLIRDFA+EKSQGERRV  LKKRI++L+ E++  N E EE+K+ KE  E
Sbjct: 1   MAGTDSRKQLLTLIRDFAAEKSQGERRVESLKKRIQELQSEMDIANAELEESKRSKEAAE 60

Query: 61  QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMF 117
           QELKGYEVELA+N  + Q LE+R + I  E+S VG+++  LK     +  GFI  +F
Sbjct: 61  QELKGYEVELAMNEASIQTLEARNAAIQYEVSMVGSDLGILK-----VFIGFISGVF 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2088922	292	AT3G28370 "AT3G28370" [Arabido	0.973	0.75	0.450	1.4e-41
TAIR|locus:2033964	160	AT1G51430 "AT1G51430" [Arabido	0.462	0.65	0.347	2.3e-10

TAIR|locus:2088922 AT3G28370 "AT3G28370" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 101/224 (45%), Positives = 139/224 (62%)

Query:     1 MEGSDPKKHLLTLIRDFASEKSQGERRVVGXXXXXXXXXXXXXXXXXXXXXXKQLKETIE 60
             M G D +K LL+LIRDF SE+S+GE+RVVG                      K++KE  E
Sbjct:     1 MAGIDTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEILQSEVEAANSEVEKAKRIKEVAE 60

Query:    61 QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELN 120
             +EL GYEVEL+LN+   Q+LE+RISL+ +E++T+G+EV+ALK ++  LRD FI QM ELN
Sbjct:    61 EELNGYEVELSLNDATIQSLEARISLLQDEVTTIGSEVDALKNKEGLLRDQFISQMEELN 120

Query:   121 DKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTARXX 180
              +IR F K++  +L  DD  G  A  +A  + S  G    A+K +   ++EV SQ A+  
Sbjct:   121 KEIREFQKTVDSSLSSDDGIGITANVKASEDGS--GADLEAIKGM---LSEVNSQLAKEE 175

Query:   181 XXXXXXXKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTRYP 224
                    KIQ+Q+Q EL D E+K+SLME I  +T S+Q LTRYP
Sbjct:   176 EGYLAEQKIQEQLQKELDDYEKKMSLMEAITDKTNSVQVLTRYP 219

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033964 AT1G51430 "AT1G51430" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 40/115 (34%), Positives = 63/115 (54%)

Query:    57 ETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQM 116
             E     + G   EL+LN+   Q+LE+RISL+ +E+ST G E +ALK+    L +G I Q 
Sbjct:    47 ERFYYSIPGDTGELSLNDFTIQSLEARISLLQDEVSTNGIEDDALKRSVYKL-NGRIDQ- 104

Query:   117 FELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALK-TLEDKIA 170
                 +K   FHK+I  ++  D++ G  A ++A  + S  G    A+K  L D ++
Sbjct:   105 ---GEK---FHKTIDLSVGSDETTGITANNKAFVDGS--GADSEAIKGMLSDSLS 151

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 38/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 14  IRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALN 73
           +       +Q  + +  L+  IE+L   LE    E  EA+   E +E +++  + EL   
Sbjct: 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801

Query: 74  NTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133
             A   L + ++L++ E + +   +E+L++   +       ++ +L ++I    + I   
Sbjct: 802 REALDELRAELTLLNEEAANLRERLESLERRIAATER----RLEDLEEQIEELSEDIESL 857

Query: 134 LQEDDSFGTA---AVSEADHNFSKKGVPEVALKTLED-------KIAEVVSQTAREEELY 183
             E +          SE +   +++   E AL  L         ++ E+ S+ +      
Sbjct: 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917

Query: 184 QEEEKIQKQVQLELIDLE 201
           +E  +   Q++L L  LE
Sbjct: 918 EELREKLAQLELRLEGLE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 36/197 (18%), Positives = 85/197 (43%), Gaps = 10/197 (5%)

Query: 19  SEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQ 78
           +   +  + +    ++I ++  E+E    E E+ K+  E +E++L   E E+    +  +
Sbjct: 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761

Query: 79  ALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDD 138
            LE+RI  +  ++  +   +  L+     L    I ++     K+      I   L+E +
Sbjct: 762 ELEARIEELEEDLHKLEEALNDLEA---RLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818

Query: 139 SFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQ----TAREEELYQEEEKIQKQV- 193
                   E ++   +    +     L+++I  +  +      ++EEL +E E+++  + 
Sbjct: 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878

Query: 194 QLE--LIDLERKVSLME 208
            LE  L DL+++   +E
Sbjct: 879 DLESRLGDLKKERDELE 895

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 22/97 (22%), Positives = 47/97 (48%)

Query: 14  IRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALN 73
           + +  +E ++    +  LK+ IE L   LE  +   E+ K+  + +E EL+  + EL   
Sbjct: 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEEL 444

Query: 74  NTAFQALESRISLIHNEISTVGAEVEALKKEQESLRD 110
           N   + LE ++  + + +  +  E+  L++E + L  
Sbjct: 445 NEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.63
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.51
PRK02224	880	chromosome segregation protein; Provisional	93.81
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.59
PRK11637	428	AmiB activator; Provisional	93.52
PRK10884	206	SH3 domain-containing protein; Provisional	92.01
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	91.63
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.46
PRK11637	428	AmiB activator; Provisional	90.91
PRK04863	1486	mukB cell division protein MukB; Provisional	90.21
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.21
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	90.16
PHA02562	562	46 endonuclease subunit; Provisional	89.82
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.78
PHA02562	562	46 endonuclease subunit; Provisional	89.6
PRK02224	880	chromosome segregation protein; Provisional	89.28
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	88.51
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	88.27
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	87.98
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.47
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	87.36
KOG0018	1141	consensus Structural maintenance of chromosome pro	86.92
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	85.75
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	85.69
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	85.38
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	83.36
PF10186	302	Atg14: UV radiation resistance protein and autopha	82.18
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	81.85
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	81.24

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.63  E-value=4.4  Score=40.09  Aligned_cols=52  Identities=13%  Similarity=0.102  Sum_probs=34.3

Q ss_pred             hhhHHHHHHHHHHhhhhhh-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027302          161 ALKTLEDKIAEVVSQTARE-------EELYQEEEKIQKQVQLELIDLERKVSLMEMIAY  212 (225)
Q Consensus       161 d~e~i~~~l~dvvSq~~~E-------eeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~  212 (225)
                      +.+.+...+......+.+-       -++|..-...++.+..++.|+...+.-+..+..
T Consensus       952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~ 1010 (1164)
T TIGR02169       952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010 (1164)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666555544433       378888888888888888888876655444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.51  E-value=1.9  Score=38.82  Aligned_cols=97  Identities=26%  Similarity=0.378  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhh---------hhhhhHHH
Q 027302           30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEIS---------TVGAEVEA  100 (225)
Q Consensus        30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS---------~vGs~lda  100 (225)
                      .|..|+...+-+++++.+|++.+++..++.++++.+++-|++-+..-|+.+.+|+...++=++         .-+.+++.
T Consensus        21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~  100 (239)
T COG1579          21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI  100 (239)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            466777889999999999999999999999999999999999999999999999999887653         33444444


Q ss_pred             HHHhhhhhhhHHHHHHHHhhHHHHHHHHHh
Q 027302          101 LKKEQESLRDGFIVQMFELNDKIRTFHKSI  130 (225)
Q Consensus       101 LK~~~~~~r~~Fis~m~~LN~kIR~FQq~i  130 (225)
                      +|......+    +.+.+++.++.+-++-+
T Consensus       101 ak~r~~~le----~el~~l~~~~~~l~~~i  126 (239)
T COG1579         101 AKERINSLE----DELAELMEEIEKLEKEI  126 (239)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            444433333    33455555554444443

>PRK02224 chromosome segregation protein; Provisional

Probab=93.81  E-value=5.8  Score=39.23  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=44.6

Q ss_pred             hcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 027302           21 KSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEA  100 (225)
Q Consensus        21 kS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~lda  100 (225)
                      ...-++++..|+.++..+..+++.++..++....-.+..+.+|.-...+|.-....+..++.++..++.++..+-+++..
T Consensus       351 ~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~  430 (880)
T PRK02224        351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE  430 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555555555555555555544445555554333333222344556666666666666666666655


Q ss_pred             HHHh
Q 027302          101 LKKE  104 (225)
Q Consensus       101 LK~~  104 (225)
                      ++..
T Consensus       431 ~~~~  434 (880)
T PRK02224        431 LEAT  434 (880)
T ss_pred             HHHH
Confidence            5554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.59  E-value=5.1  Score=41.88  Aligned_cols=193  Identities=20%  Similarity=0.271  Sum_probs=89.0

Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302           17 FASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA   96 (225)
Q Consensus        17 Fa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs   96 (225)
                      .-.+.+.-++|+..|..++.......+....+++....-...++..+....-.+.-....+..+...+..++.++..+..
T Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  877 (1163)
T COG1196         798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED  877 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333455555555555555555555566666555555555566555555554455555555556666666666666


Q ss_pred             hHHHHHHhhhhhh---hHHHHHHHHhhHHHHHHHHHhhh---hcccCCCcCcccccccccccccCCChhhhhhHHHHHHH
Q 027302           97 EVEALKKEQESLR---DGFIVQMFELNDKIRTFHKSIAF---NLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIA  170 (225)
Q Consensus        97 ~ldaLK~~~~~~r---~~Fis~m~~LN~kIR~FQq~i~~---el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~  170 (225)
                      ++..++.......   ...-+...+++..|..+...+..   ....-.. .....   .+........+++. .+...+.
T Consensus       878 ~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~-~~~~~i~  952 (1163)
T COG1196         878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEV-ELPEL---EEELEEEYEDTLET-ELEREIE  952 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhhhccccccchhH-HHHHHHH
Confidence            5555554433222   22222333333333222222211   0000000 00000   00000000000010 3344444


Q ss_pred             HHHhhhhhh-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027302          171 EVVSQTARE-------EELYQEEEKIQKQVQLELIDLERKVSLMEMIAYET  214 (225)
Q Consensus       171 dvvSq~~~E-------eeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~et  214 (225)
                      ..-..+..-       -++|......++.+..++.|+.+.+.-..-++.++
T Consensus       953 ~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~ 1003 (1163)
T COG1196         953 RLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEEL 1003 (1163)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333332222       67899999999999999999876554443333333

>PRK11637 AmiB activator; Provisional

Probab=93.52  E-value=0.41  Score=44.08  Aligned_cols=83  Identities=11%  Similarity=0.265  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh
Q 027302           30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLR  109 (225)
Q Consensus        30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r  109 (225)
                      .++++|+.++.++.....++...+.-...++.+|...+-++.-....|..+++.|+.++.+|...-.++..++..-...+
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777777777777777777777777777777777777777888888888888887777777777655554


Q ss_pred             hHH
Q 027302          110 DGF  112 (225)
Q Consensus       110 ~~F  112 (225)
                      ..|
T Consensus       124 ~~l  126 (428)
T PRK11637        124 RLL  126 (428)
T ss_pred             HHH
Confidence            444

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.01  E-value=0.7  Score=40.17  Aligned_cols=46  Identities=15%  Similarity=0.280  Sum_probs=38.8

Q ss_pred             chhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHH
Q 027302           73 NNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFE  118 (225)
Q Consensus        73 n~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~  118 (225)
                      .+..|..|+.+++.|+.|+...-++++.|+...+...+....++|-
T Consensus       130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~  175 (206)
T PRK10884        130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFM  175 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566778999999999999999999999999988877766666654

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.63  E-value=8  Score=33.34  Aligned_cols=103  Identities=29%  Similarity=0.402  Sum_probs=61.4

Q ss_pred             cchhHHHHHHHHHH-------HHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302           24 GERRVVGLKKRIEK-------LRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA   96 (225)
Q Consensus        24 GErrv~~Lkkri~~-------l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs   96 (225)
                      .+|+...|..|...       |...+..|..-.+.+-+--+.+..-|..-+..|.-...-...+|++|..|.+++..||+
T Consensus        76 ~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~  155 (237)
T PF00261_consen   76 SERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGN  155 (237)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence            35555555444333       33333333333333333333333444444555555677788899999999999999999


Q ss_pred             hHHHHHHhhh--hhh-hHHHHHHHHhhHHHHHH
Q 027302           97 EVEALKKEQE--SLR-DGFIVQMFELNDKIRTF  126 (225)
Q Consensus        97 ~ldaLK~~~~--~~r-~~Fis~m~~LN~kIR~F  126 (225)
                      .+..|-....  ..| +.|-..+-.|+.++...
T Consensus       156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea  188 (237)
T PF00261_consen  156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEA  188 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999877753  333 55555555555555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.46  E-value=4.2  Score=32.32  Aligned_cols=105  Identities=22%  Similarity=0.280  Sum_probs=59.1

Q ss_pred             hhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHH---HHHHHHhhhhhhhhhh
Q 027302           20 EKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQAL---ESRISLIHNEISTVGA   96 (225)
Q Consensus        20 EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~L---EAris~iQ~EiS~vGs   96 (225)
                      +++--+.-+..++.++......+..+..+++.-...-..|++.   |+-+|......++.|   .+..+.++.+|+..-+
T Consensus         4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~---YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~   80 (132)
T PF07926_consen    4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK---YERELVKHAEDIKELQQLREELQELQQEINELKA   80 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555666666666666666666665533333333332   888888888766554   4566666666666666


Q ss_pred             hHHHHHHhhhhhhhHHHHHHHHhhHHHHHHH
Q 027302           97 EVEALKKEQESLRDGFIVQMFELNDKIRTFH  127 (225)
Q Consensus        97 ~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQ  127 (225)
                      .++..+..-...+..+-.+=..|...|....
T Consensus        81 ~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~  111 (132)
T PF07926_consen   81 EAESAKAELEESEASWEEQKEQLEKELSELE  111 (132)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            6666555555444444444444444444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK11637 AmiB activator; Provisional

Probab=90.91  E-value=13  Score=34.35  Aligned_cols=88  Identities=11%  Similarity=0.195  Sum_probs=56.6

Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302           17 FASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA   96 (225)
Q Consensus        17 Fa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs   96 (225)
                      |++..+.-+.+...+++.|..++.++.....++..+..-.+.++.+|...+-++.-...-|..++..|..++.+|...-.
T Consensus        38 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~  117 (428)
T PRK11637         38 FSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ  117 (428)
T ss_pred             hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666777777777777777666666666666666666666666666666666666666666666666666666


Q ss_pred             hHHHHHHh
Q 027302           97 EVEALKKE  104 (225)
Q Consensus        97 ~ldaLK~~  104 (225)
                      +++.++..
T Consensus       118 ~l~~~~~~  125 (428)
T PRK11637        118 QQAAQERL  125 (428)
T ss_pred             HHHHHHHH
Confidence            66555443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.21  E-value=23  Score=39.15  Aligned_cols=115  Identities=14%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChh
Q 027302           80 LESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPE  159 (225)
Q Consensus        80 LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~  159 (225)
                      ++..+..++.++.....+++.|+..    .......+..+..++.+.++.+.---.-...||..+               
T Consensus       374 leeeleeleeEleelEeeLeeLqeq----Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~---------------  434 (1486)
T PRK04863        374 ADEQQEENEARAEAAEEEVDELKSQ----LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPD---------------  434 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------------
Confidence            3334444444444444555544433    244566777777777777777754433333455422               


Q ss_pred             hhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027302          160 VALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYE  213 (225)
Q Consensus       160 vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~e  213 (225)
                      ++.+.|.+++..--+++..-...+..-.........++..++.+..+.-.+.|+
T Consensus       435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk  488 (1486)
T PRK04863        435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE  488 (1486)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            244556666666555554445555555555555666666666666666666554

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.21  E-value=8.9  Score=37.68  Aligned_cols=31  Identities=13%  Similarity=-0.009  Sum_probs=24.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 027302           25 ERRVVGLKKRIEKLRLELEAENFEREEAKQL   55 (225)
Q Consensus        25 Errv~~Lkkri~~l~~e~daanaElE~aKr~   55 (225)
                      .+...-|..||.+++.+++.|..++++=|+-
T Consensus       193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~  223 (754)
T TIGR01005       193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQ  223 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445678889999999999888888877763

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=90.16  E-value=20  Score=35.98  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=90.4

Q ss_pred             hhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHH----HHHHhhhhhhhHHHHHHHHhhH
Q 027302           46 NFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVE----ALKKEQESLRDGFIVQMFELND  121 (225)
Q Consensus        46 naElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ld----aLK~~~~~~r~~Fis~m~~LN~  121 (225)
                      +.++|...++++.+-.=|+.-+..++==..-+++-++++-+|+.+--.+...|.    .||........+.-..+.+   
T Consensus       372 ~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~---  448 (594)
T PF05667_consen  372 NEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQE---  448 (594)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHH---
Confidence            333444444444443334444444433345566667788888888888877554    4554444333334333322   


Q ss_pred             HHHHHHH---HhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHH
Q 027302          122 KIRTFHK---SIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELI  198 (225)
Q Consensus       122 kIR~FQq---~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELa  198 (225)
                       |+.+++   -+..++..+...-. ..........    +.++--+--.-|-++|+||.|-.++-.+-+.|-..||.|+-
T Consensus       449 -ik~~r~~~k~~~~e~~~Kee~~~-qL~~e~e~~~----k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN  522 (594)
T PF05667_consen  449 -IKELREEIKEIEEEIRQKEELYK-QLVKELEKLP----KDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEIN  522 (594)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCC----CCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222222   22222222221000 0000011111    12345566778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027302          199 DLERKVSLMEMIAYET  214 (225)
Q Consensus       199 D~qaK~sLMe~i~~et  214 (225)
                      .+..|..-=-+|+.|+
T Consensus       523 ~l~gkL~RtF~v~dEl  538 (594)
T PF05667_consen  523 SLTGKLDRTFTVTDEL  538 (594)
T ss_pred             HHHHHHHhHHHHHHHH
Confidence            9999877666666654

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.82  E-value=17  Score=33.82  Aligned_cols=105  Identities=10%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecc----------------hhhHHHHHHHHHHhhhhh
Q 027302           28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALN----------------NTAFQALESRISLIHNEI   91 (225)
Q Consensus        28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln----------------~~siq~LEAris~iQ~Ei   91 (225)
                      +..|+..|.+++...+.....|..++.....++.++..++..+.+.                +.-+..|+..|..|+.++
T Consensus       236 l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l  315 (562)
T PHA02562        236 IEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSL  315 (562)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHH
Confidence            3344444444444433333334445555555555554444433332                223344444444444444


Q ss_pred             hhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302           92 STVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN  133 (225)
Q Consensus        92 S~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e  133 (225)
                      ..+-..+..++.... .+...-..+.+++..|++....+...
T Consensus       316 ~~l~~~i~~~~~~~~-~~~~~~~~i~el~~~i~~~~~~i~~~  356 (562)
T PHA02562        316 EKLDTAIDELEEIMD-EFNEQSKKLLELKNKISTNKQSLITL  356 (562)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444433332 24556666777777777777776553

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.78  E-value=7.2  Score=34.23  Aligned_cols=26  Identities=8%  Similarity=0.277  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027302           77 FQALESRISLIHNEISTVGAEVEALK  102 (225)
Q Consensus        77 iq~LEAris~iQ~EiS~vGs~ldaLK  102 (225)
                      +..+++.+..++.++....++++.++
T Consensus       205 ~~~~~~~l~~~~~~l~~~~~~l~~~~  230 (423)
T TIGR01843       205 RAEAQGELGRLEAELEVLKRQIDELQ  230 (423)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445555555555444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.60  E-value=17  Score=33.70  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q 027302           27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQE  106 (225)
Q Consensus        27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~  106 (225)
                      ++..++..++.+..++.....+++.....-+..+..+.          ..++.++..+.-+..+....-++++.|+..-.
T Consensus       175 ~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~----------~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~  244 (562)
T PHA02562        175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG----------ENIARKQNKYDELVEEAKTIKAEIEELTDELL  244 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666665555544444333333322          23455555555544444444444444444433


Q ss_pred             hhhhH----------HHHHHHHhhHHHHHHHHHhhhh
Q 027302          107 SLRDG----------FIVQMFELNDKIRTFHKSIAFN  133 (225)
Q Consensus       107 ~~r~~----------Fis~m~~LN~kIR~FQq~i~~e  133 (225)
                      ..+..          --..+-.+...+..+++.+.+-
T Consensus       245 ~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~  281 (562)
T PHA02562        245 NLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY  281 (562)
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33211          1122333444556666665544

>PRK02224 chromosome segregation protein; Provisional

Probab=89.28  E-value=25  Score=34.96  Aligned_cols=174  Identities=16%  Similarity=0.179  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhH-------HHHHHHHHHhhhhhhhhhhhHH
Q 027302           27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAF-------QALESRISLIHNEISTVGAEVE   99 (225)
Q Consensus        27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~si-------q~LEAris~iQ~EiS~vGs~ld   99 (225)
                      .+..+..+|..++..++....++...+......+.++..+.-++.......       ..|+.++.-|+.+++..+.++.
T Consensus       259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~  338 (880)
T PRK02224        259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ  338 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555555555555555555554444333       3344555555555555555555


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhh-
Q 027302          100 ALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAR-  178 (225)
Q Consensus       100 aLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~-  178 (225)
                      .+...    -..|......|...+...+..++.--.+-           ...........-++..+...+.++-+++.. 
T Consensus       339 ~~~~~----~e~~~~~~~~le~~~~~l~~~~~~l~~~~-----------~~~~~~l~~~~~~l~~l~~el~el~~~l~~~  403 (880)
T PRK02224        339 AHNEE----AESLREDADDLEERAEELREEAAELESEL-----------EEAREAVEDRREEIEELEEEIEELRERFGDA  403 (880)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44432    14455555555555555544433110000           000000011122445555555555444321 


Q ss_pred             ------hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027302          179 ------EEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETG  215 (225)
Q Consensus       179 ------EeeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~etk  215 (225)
                            -+..+..-+...+.++.++..++..+......+.+++
T Consensus       404 ~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  446 (880)
T PRK02224        404 PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE  446 (880)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1333344445566677777777777776666655554

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=88.51  E-value=27  Score=34.45  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHH
Q 027302           31 LKKRIEKLRLELEAENFEREEA   52 (225)
Q Consensus        31 Lkkri~~l~~e~daanaElE~a   52 (225)
                      |...++.++.+++.++.++..+
T Consensus       675 l~~e~~~l~~~~~~l~~~l~~~  696 (1179)
T TIGR02168       675 RRREIEELEEKIEELEEKIAEL  696 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.27  E-value=5.3  Score=32.76  Aligned_cols=88  Identities=17%  Similarity=0.270  Sum_probs=59.8

Q ss_pred             HHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHH
Q 027302           35 IEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIV  114 (225)
Q Consensus        35 i~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis  114 (225)
                      +.-|+.+.|.|..-.+++.----.++++...       .+.-|.+|..+++.|.++|.++-..|..+|..-...- .-.+
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~-------~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~-~~~~   73 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQ-------KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE-KRKS   73 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHH
Confidence            3456666777766666665555555555544       3345677999999999999999999999888765443 3336


Q ss_pred             HHHHhhHHHHHHHHHh
Q 027302          115 QMFELNDKIRTFHKSI  130 (225)
Q Consensus       115 ~m~~LN~kIR~FQq~i  130 (225)
                      ++..||.||....+-+
T Consensus        74 ~~E~l~rriq~LEeel   89 (143)
T PF12718_consen   74 NAEQLNRRIQLLEEEL   89 (143)
T ss_pred             hHHHHHhhHHHHHHHH
Confidence            6778888886554433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR00606 rad50 rad50

Probab=87.98  E-value=23  Score=37.63  Aligned_cols=30  Identities=17%  Similarity=0.194  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhhcccc
Q 027302          189 IQKQVQLELIDLERKVSLME----MIAYETGSLQ  218 (225)
Q Consensus       189 ~~eqv~qELaD~qaK~sLMe----~i~~etk~LQ  218 (225)
                      +...+++|+..+..+++.+.    .++|+++.|+
T Consensus      1048 ~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606      1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666667766666665554    3456666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.47  E-value=10  Score=32.74  Aligned_cols=104  Identities=29%  Similarity=0.374  Sum_probs=73.4

Q ss_pred             CchhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHH
Q 027302            4 SDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESR   83 (225)
Q Consensus         4 ~d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAr   83 (225)
                      .||.-.+-++++-|+.=..||= -|.-|+.||.+|-+--+--..=++..|+..+.+++.    +.+..=.+.-|.-||..
T Consensus        65 dd~~~~f~~~~~tl~~LE~~GF-nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~Le~k  139 (190)
T PF05266_consen   65 DDSRSSFESLMKTLSELEEHGF-NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKELEMK  139 (190)
T ss_pred             CCcHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHH
Confidence            3666777788888877666774 477889999998888777777788888887666665    33444556778888888


Q ss_pred             HHHhhhh--------------hhhhhhhHHHHHHhhhhhhhHH
Q 027302           84 ISLIHNE--------------ISTVGAEVEALKKEQESLRDGF  112 (225)
Q Consensus        84 is~iQ~E--------------iS~vGs~ldaLK~~~~~~r~~F  112 (225)
                      |..+|++              |+.-.|++++++....+.+..|
T Consensus       140 i~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F  182 (190)
T PF05266_consen  140 ILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF  182 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888884              5666666666666554444444

>TIGR00606 rad50 rad50

Probab=87.36  E-value=32  Score=36.62  Aligned_cols=107  Identities=17%  Similarity=0.236  Sum_probs=58.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHH----------HhccceeeeecchhhHHHHHHHHHHhhhhhhhh
Q 027302           25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQ----------ELKGYEVELALNNTAFQALESRISLIHNEISTV   94 (225)
Q Consensus        25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eq----------eL~G~evqlaln~~siq~LEAris~iQ~EiS~v   94 (225)
                      .+.+..|...|..+..+++....+++.....++....          +++|-.++++=.....+.|+.++..+..++...
T Consensus       821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l  900 (1311)
T TIGR00606       821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL  900 (1311)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666666666665544444444433333          344444444444455566777777766666666


Q ss_pred             hhhHHHHHHhhh--------------hhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302           95 GAEVEALKKEQE--------------SLRDGFIVQMFELNDKIRTFHKSIA  131 (225)
Q Consensus        95 Gs~ldaLK~~~~--------------~~r~~Fis~m~~LN~kIR~FQq~i~  131 (225)
                      +.++..++..-.              ..+...=..+-++..+++.|+..++
T Consensus       901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  951 (1311)
T TIGR00606       901 IREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK  951 (1311)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665555444332              2333344445555566666666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=86.92  E-value=30  Score=37.70  Aligned_cols=176  Identities=19%  Similarity=0.196  Sum_probs=88.8

Q ss_pred             hHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhh
Q 027302            9 HLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIH   88 (225)
Q Consensus         9 qLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ   88 (225)
                      +|+--|++.-. ++.   +|....-.|..|.+.+.-+.-+++..||.-+.-++||.+              .++-|-.++
T Consensus       663 rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~--------------~~~~i~~~~  724 (1141)
T KOG0018|consen  663 RLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQR--------------TESEIDEFG  724 (1141)
T ss_pred             HHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhC
Confidence            44445555544 222   333334444444444555555666677666666666555              444444444


Q ss_pred             hhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHH
Q 027302           89 NEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDK  168 (225)
Q Consensus        89 ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~  168 (225)
                      -+||.+--+++-           +-.-|.+|-.++++-+..|--.|-...++-+    .-.++..-...-+--..-+.+.
T Consensus       725 p~i~~i~r~l~~-----------~e~~~~~L~~~~n~ved~if~~f~~~igv~i----r~Yee~~~~~~~a~k~~ef~~q  789 (1141)
T KOG0018|consen  725 PEISEIKRKLQN-----------REGEMKELEERMNKVEDRIFKGFCRRIGVRI----REYEERELQQEFAKKRLEFENQ  789 (1141)
T ss_pred             chHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhcCeee----ehHHHHHHHHHHHHHHHHHHHH
Confidence            444433333332           3334566666666666555555544443221    1112222101101111223445


Q ss_pred             HHHHHhhhhhh-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027302          169 IAEVVSQTARE-----EELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSL  217 (225)
Q Consensus       169 l~dvvSq~~~E-----eeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~etk~L  217 (225)
                      ++.+-++|+=|     ...|-.....-++++.|+..++..+.-|.++.+++..|
T Consensus       790 ~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~  843 (1141)
T KOG0018|consen  790 KAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEEL  843 (1141)
T ss_pred             HHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHH
Confidence            55555555555     44555666666677777777777777777777776444

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=85.75  E-value=5.4  Score=32.99  Aligned_cols=69  Identities=33%  Similarity=0.378  Sum_probs=51.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302           25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE  104 (225)
Q Consensus        25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~  104 (225)
                      =+|+..+-+++..++..++++....+.+....+..             ....-..++..|..+..|+++.-.|+++||..
T Consensus       117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-------------~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ  183 (192)
T PF05529_consen  117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL-------------LKEENKKLSEEIEKLKKELEKKEKEIEALKKQ  183 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888888888888888877766555444432             22333447888999999999999999999986


Q ss_pred             hh
Q 027302          105 QE  106 (225)
Q Consensus       105 ~~  106 (225)
                      -.
T Consensus       184 ~~  185 (192)
T PF05529_consen  184 SE  185 (192)
T ss_pred             HH
Confidence            43

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=85.69  E-value=20  Score=30.01  Aligned_cols=83  Identities=18%  Similarity=0.294  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhh
Q 027302           29 VGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESL  108 (225)
Q Consensus        29 ~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~  108 (225)
                      ..|+.+|.-|.++++....+.+.+.+-.|++-.              .|.+|++.|+-+-.+....-.+|+.|...    
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL~~l~sE----   81 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELELDTLRSE----   81 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            345555555555555555555444444333322              24557776666666666666677776655    


Q ss_pred             hhHHHHHHHHhhHHHHHHHHH
Q 027302          109 RDGFIVQMFELNDKIRTFHKS  129 (225)
Q Consensus       109 r~~Fis~m~~LN~kIR~FQq~  129 (225)
                      ++..-....+++.+|..+-..
T Consensus        82 k~~L~k~lq~~q~kv~eLE~~  102 (140)
T PF10473_consen   82 KENLDKELQKKQEKVSELESL  102 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444455666666655433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=85.38  E-value=21  Score=29.91  Aligned_cols=99  Identities=22%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             CchhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecc-hhhHHHHHH
Q 027302            4 SDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALN-NTAFQALES   82 (225)
Q Consensus         4 ~d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln-~~siq~LEA   82 (225)
                      -||.+-|=-.|||.-..-..-.+.|....-.-..+...++.+..+.+   ....-|+.=|.-+.=.||-. -.-++.++.
T Consensus        22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~---~~~~~A~~Al~~g~edLAr~al~~k~~~e~   98 (221)
T PF04012_consen   22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAE---KWEKQAELALAAGREDLAREALQRKADLEE   98 (221)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            47887777889988776666555554444443344444444443322   11222233333222233322 244566777


Q ss_pred             HHHHhhhhhhhhhhhHHHHHHhh
Q 027302           83 RISLIHNEISTVGAEVEALKKEQ  105 (225)
Q Consensus        83 ris~iQ~EiS~vGs~ldaLK~~~  105 (225)
                      .+..++..+......++.|+..-
T Consensus        99 ~~~~l~~~~~~~~~~~~~l~~~l  121 (221)
T PF04012_consen   99 QAERLEQQLDQAEAQVEKLKEQL  121 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888887777663

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=83.36  E-value=14  Score=26.30  Aligned_cols=87  Identities=17%  Similarity=0.258  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhH
Q 027302           32 KKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDG  111 (225)
Q Consensus        32 kkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~  111 (225)
                      +..+...+.....+...|+....-+......+.+.. . .+++..+.....-++.|...|......++.++......|..
T Consensus         4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~   81 (123)
T PF02050_consen    4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREE   81 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666677777777777777777777777777 5 66777777777777777777777777888888777777776


Q ss_pred             HHHHHHHhh
Q 027302          112 FIVQMFELN  120 (225)
Q Consensus       112 Fis~m~~LN  120 (225)
                      +...+-+..
T Consensus        82 l~~a~~~~k   90 (123)
T PF02050_consen   82 LQEARRERK   90 (123)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655443

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=82.18  E-value=28  Score=29.27  Aligned_cols=88  Identities=19%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             HhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhh
Q 027302           16 DFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVG   95 (225)
Q Consensus        16 DFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vG   95 (225)
                      .-..+..+=+.|+..|+.+|+.++.+++..+..+++.+..-+.....|.       -.....+.....+..+++++...-
T Consensus        60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~  132 (302)
T PF10186_consen   60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-------ASQDLVESRQEQLEELQNELEERK  132 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455556777777777777777777777777776666555555554       223444555566666667777666


Q ss_pred             hhHHHHHHhhhhhhh
Q 027302           96 AEVEALKKEQESLRD  110 (225)
Q Consensus        96 s~ldaLK~~~~~~r~  110 (225)
                      ..+..+...-..-|.
T Consensus       133 ~~l~~l~~~l~~~r~  147 (302)
T PF10186_consen  133 QRLSQLQSQLARRRR  147 (302)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666665555433333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=81.85  E-value=14  Score=41.86  Aligned_cols=145  Identities=19%  Similarity=0.267  Sum_probs=95.1

Q ss_pred             hcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 027302           21 KSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEA  100 (225)
Q Consensus        21 kS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~lda  100 (225)
                      -+|-.++.+++-|.|..++..+--.+.+++.+.|+++.+...+.-              .|.|+..++.|+-..-.++++
T Consensus      1620 ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~--------------aerr~~~l~~E~eeL~~~l~~ 1685 (1930)
T KOG0161|consen 1620 LDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAE--------------AERRLAALQAELEELREKLEA 1685 (1930)
T ss_pred             HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence            345567777777777777777777777888888877766554433              788999999999999999998


Q ss_pred             HHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhhhH
Q 027302          101 LKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREE  180 (225)
Q Consensus       101 LK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~Ee  180 (225)
                      +-+..-    .-=+...+++..|+.|.-        .++.++       ....+...   ++-.+...|.++.++...=+
T Consensus      1686 ~~Rarr----~aE~e~~E~~e~i~~~~~--------~~s~l~-------~~KrklE~---~i~~l~~elee~~~~~~~~~ 1743 (1930)
T KOG0161|consen 1686 LERARR----QAELELEELAERVNELNA--------QNSSLT-------AEKRKLEA---EIAQLQSELEEEQSELRAAE 1743 (1930)
T ss_pred             HHHHHH----hhHHHHHHHHHHHHHHhh--------cccchh-------hHHHHHHH---HHHHHHHHHHHHHHHHHhhH
Confidence            866532    111222344444443321        111111       22222233   77788888888888888888


Q ss_pred             HhhHHHHHHHHHHHHHHHHHH
Q 027302          181 ELYQEEEKIQKQVQLELIDLE  201 (225)
Q Consensus       181 eeY~~e~~~~eqv~qELaD~q  201 (225)
                      +.+++-+.+-.++.-||..=|
T Consensus      1744 Er~kka~~~a~~~~~el~~Eq 1764 (1930)
T KOG0161|consen 1744 ERAKKAQADAAKLAEELRKEQ 1764 (1930)
T ss_pred             HHHHHHHHHHHHhHHHHHHHH
Confidence            888888877777776666544

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=81.24  E-value=57  Score=37.40  Aligned_cols=155  Identities=19%  Similarity=0.269  Sum_probs=109.1

Q ss_pred             hhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHh
Q 027302            8 KHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLI   87 (225)
Q Consensus         8 KqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~i   87 (225)
                      |.|-..+|++.+.----|..+.+|++-...+-+.++.-...|+.-++.+-..|...+-++-+|...-.+|..+..-+.++
T Consensus       988 k~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el 1067 (1930)
T KOG0161|consen  988 KELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEEL 1067 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44556777777665556778889999999999999988888888888888888777777777877778888888888888


Q ss_pred             hhhhhhhhhhHHHHHHhhhh---hhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhH
Q 027302           88 HNEISTVGAEVEALKKEQES---LRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKT  164 (225)
Q Consensus        88 Q~EiS~vGs~ldaLK~~~~~---~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~  164 (225)
                      +++..+.-+++-.|....+.   .--.|--++-+|=++|..-++....+        -++..++....++-..   .++.
T Consensus      1068 ~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~e--------r~~r~K~ek~r~dL~~---ele~ 1136 (1930)
T KOG0161|consen 1068 DNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAE--------RASRAKAERQRRDLSE---ELEE 1136 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHH
Confidence            88888888888887776542   22445555555555555555544433        3344555555554444   6777


Q ss_pred             HHHHHHHHH
Q 027302          165 LEDKIAEVV  173 (225)
Q Consensus       165 i~~~l~dvv  173 (225)
                      +...|.+..
T Consensus      1137 l~~~Lee~~ 1145 (1930)
T KOG0161|consen 1137 LKEELEEQG 1145 (1930)
T ss_pred             HHHHHHHHh
Confidence            777777763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 27/189 (14%), Positives = 76/189 (40%), Gaps = 8/189 (4%)

Query: 20   EKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQA 79
            EK + +++++ L++++E+     +    E+  A    + +E ++   E +        + 
Sbjct: 949  EKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008

Query: 80   LESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDS 139
            LE R+S +   ++    + + L K +          + EL  +++   KS     QE + 
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHES----MISELEVRLKKEEKS----RQELEK 1060

Query: 140  FGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELID 199
                   E+     +    +  +  L+ ++A+   +        ++E   +     ++ +
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

Query: 200  LERKVSLME 208
            LE  +S ++
Sbjct: 1121 LESHISDLQ 1129

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 34/182 (18%), Positives = 76/182 (41%), Gaps = 8/182 (4%)

Query: 7    KKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGY 66
            +K L   + D  +  ++ E +   L K   K    +       ++ ++ ++ +E+  +  
Sbjct: 1006 RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL 1065

Query: 67   EVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTF 126
            E E +  +     L+++I+ +  +++    E++A     E        Q      KIR  
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS----QKNNALKKIREL 1121

Query: 127  HKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEE 186
               I+ +LQED     AA ++A+            L+ L+ ++ + +  TA ++EL   +
Sbjct: 1122 ESHIS-DLQEDLESEKAARNKAEKQKRDL---SEELEALKTELEDTLDTTATQQELRGSD 1177

Query: 187  EK 188
             K
Sbjct: 1178 YK 1179

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 21/165 (12%), Positives = 60/165 (36%), Gaps = 6/165 (3%)

Query: 20   EKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQA 79
                 E +++ L+++I++   E ++   +    +    T  ++L+     L ++    + 
Sbjct: 922  LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981

Query: 80   LESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDS 139
              +R+  +  EI+ +  E+   + E++++ +       E    +    +       E + 
Sbjct: 982  ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041

Query: 140  FGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQ 184
                   +       K + E   K L ++  ++      E   YQ
Sbjct: 1042 LNRRIHDQ------AKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 32/190 (16%), Positives = 76/190 (40%), Gaps = 27/190 (14%)

Query: 25   ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRI 84
            +     +  + E  +L++EA     E  K+L   +E ++   + ++   N  +++L  ++
Sbjct: 894  QCCYRRMMAKRELKKLKIEAR--SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951

Query: 85   SLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAA 144
            + +    ST   E E L+ + E LR           ++ +     +  +LQE+       
Sbjct: 952  NNLEITYST---ETEKLRSDVERLR--------MSEEEAKNATNRVL-SLQEE------- 992

Query: 145  VSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKV 204
            +++      +    +   KT+E+   +        E+L  E ++    ++ E  +L R++
Sbjct: 993  IAKLRKELHQT---QTEKKTIEEWADKY---KHETEQLVSELKEQNTLLKTEKEELNRRI 1046

Query: 205  SLMEMIAYET 214
                    ET
Sbjct: 1047 HDQAKEITET 1056

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 42/212 (19%)

Query: 8   KHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYE 67
           K LLT  R     K   +         I    L+  +     +E K L            
Sbjct: 267 KILLT-TRF----KQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSL------------ 306

Query: 68  VELALN-NTAFQALESRISLIH-NEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRT 125
             L    +   Q L   +   +   +S +   +    ++  +  D +  +    +     
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNW--KHVNCDKLTTI 358

Query: 126 FHKSIAFNLQEDD---SFGTAAVSEADHNFSKKGVPEVALKTL-EDKIAEVVSQTAREEE 181
              S+   L+  +    F   +V     +     +P + L  +  D I   V     +  
Sbjct: 359 IESSLN-VLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 182 LYQEEEKIQKQVQLEL--IDLERKVSLMEMIA 211
            Y   EK  K+  + +  I LE KV L    A
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 38/269 (14%), Positives = 70/269 (26%), Gaps = 90/269 (33%)

Query: 7   KKHLLTLIRDFASEKSQGERR-----------VVGLKKRIEKLRLELEAENFEREEAKQL 55
              + +L+  +   + Q   R           ++    R      +    N++     +L
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NWKHVNCDKL 355

Query: 56  KETIEQ--------ELKGYEVELALNNTAFQA----LESRISLIHNEISTVGAEVEALKK 103
              IE         E +     L++    F          +SLI  ++      V   K 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 104 EQESL----RDGFIVQMFEL-------NDKIRTFHKSI--AFNLQEDDSFGTAAVSEAD- 149
            + SL         + +  +        +     H+SI   +N+ +            D 
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 150 --------HNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELID-- 199
                   H           LK +E              E       +        +D  
Sbjct: 472 YFYSHIGHH-----------LKNIE------------HPERMTLFRMV-------FLDFR 501

Query: 200 -LERKVSLMEMIAYETGS----LQDLTRY 223
            LE+K+         +GS    LQ L  Y
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFY 530

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 8/32 (25%)

Query: 48 EREEAKQLKETIEQELKGYEVE----LALNNT 75
          E++  K+L    +  LK Y  +    LA+  T
Sbjct: 18 EKQALKKL----QASLKLYADDSAPALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	92.34
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.21
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.51
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.63
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	82.25
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	81.59
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	80.15

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=92.34  E-value=2.6  Score=35.66  Aligned_cols=92  Identities=21%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302           28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES  107 (225)
Q Consensus        28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~  107 (225)
                      +.-.|.+...+...++.+..|+.+=.-.-.-.|.+|-          ..+..+|.+++.|+..+...+.+++.+|.+-..
T Consensus        12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE----------~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~   81 (189)
T 2v71_A           12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE----------AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH   81 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666677777777777777655444444455552          356669999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhHHHHHHHHH
Q 027302          108 LRDGFIVQMFELNDKIRTFHKS  129 (225)
Q Consensus       108 ~r~~Fis~m~~LN~kIR~FQq~  129 (225)
                      ...++.+++-.|...|..++.+
T Consensus        82 ~~~e~~~~~~~Lq~el~~l~~~  103 (189)
T 2v71_A           82 QYAQSYKQVSVLEDDLSQTRAI  103 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888877555544

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.21  E-value=2.7  Score=31.47  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302           28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES  107 (225)
Q Consensus        28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~  107 (225)
                      +-.+|+.++-++.+.|.|....+.+..-...+++...       =.+.-|.+|.-+|+.+.+|+-.+=..|...+..-..
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~-------~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee   76 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSK-------QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999998888887776666544444444332       234455667777777777777776666555443222


Q ss_pred             hhhHHHH----HHHHhhHHHHH
Q 027302          108 LRDGFIV----QMFELNDKIRT  125 (225)
Q Consensus       108 ~r~~Fis----~m~~LN~kIR~  125 (225)
                      . ..-.+    .+..||.||.-
T Consensus        77 ~-ek~~~~aE~ev~~L~Rriql   97 (101)
T 3u1c_A           77 A-EENAAKAESEVASLNRRIQL   97 (101)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHH
Confidence            2 22233    88999999864

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.51  E-value=3.3  Score=30.75  Aligned_cols=91  Identities=20%  Similarity=0.246  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302           28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES  107 (225)
Q Consensus        28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~  107 (225)
                      +-.+|+.+.-++.+.|.|....+.+..-...+++...       =.+..|.+|.-+|..+++++-.+-..+...+..-..
T Consensus         4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~-------~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~   76 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCK-------QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889988888888887776665544444444332       244566778888888888888887777766654332


Q ss_pred             ---hhhHHHHHHHHhhHHHHH
Q 027302          108 ---LRDGFIVQMFELNDKIRT  125 (225)
Q Consensus       108 ---~r~~Fis~m~~LN~kIR~  125 (225)
                         .+..-=+.+..||.||+-
T Consensus        77 ~ek~~~~AE~evasLnRriql   97 (101)
T 3u59_A           77 AEKKATDAEAEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence               223444589999999864

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.63  E-value=16  Score=30.39  Aligned_cols=21  Identities=10%  Similarity=-0.160  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhh
Q 027302           28 VVGLKKRIEKLRLELEAENFE   48 (225)
Q Consensus        28 v~~Lkkri~~l~~e~daanaE   48 (225)
                      |..|...+..++..+.+++.+
T Consensus        34 l~~le~~~~~l~~~~~~~~~~   54 (256)
T 3na7_A           34 LDKALNDKEAKNKAILNLEEE   54 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=82.25  E-value=7.3  Score=27.86  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHH
Q 027302           30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVE   99 (225)
Q Consensus        30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ld   99 (225)
                      .+|+++.-++.+.|.|...++.+..--+.++....       =.+..|.+|.-+|..+++++-.+-..|.
T Consensus         3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~-------~~E~ev~~L~kKiq~lE~eld~~ee~l~   65 (81)
T 1ic2_A            3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSK-------QLEDELVALQKKLKGTEDELDKYSESLK   65 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888888888888888777776655555554432       2234455677777777777665554443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=81.59  E-value=2.4  Score=42.55  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=24.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHH
Q 027302           23 QGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQE   62 (225)
Q Consensus        23 ~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eqe   62 (225)
                      .+++.+..|+++|.+++..+.....++.+...-.+..+++
T Consensus       854 ~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e  893 (1184)
T 1i84_S          854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE  893 (1184)
T ss_dssp             THHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777777666665555444443333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=80.15  E-value=9.4  Score=28.53  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhh
Q 027302           15 RDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNE   90 (225)
Q Consensus        15 RDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~E   90 (225)
                      ++.-....+.|.-|..|.+||.-+..++|.+...|..|+..-+.++.-.       .-+++-+.+|--||.+|.+|
T Consensus        33 k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~-------~~aE~ev~~L~RriqllEEe  101 (101)
T 3u1c_A           33 KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA-------AKAESEVASLNRRIQLVEEE  101 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHccC
Confidence            3334445667888999999999999999988888888777666555443       22334556677777777653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00