Citrus Sinensis ID: 027303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MLMIFVIDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccEEEEEEccccccccccccccccEEEEEEEEEcccccEEEEEEccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccEEEEEEEEEEEEcccccccHHHHcccEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHEEEEEcccccccccccHccccccccccccccEEcEEEEEEcccccEEEEEEccccccccccEEEcEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHccEEEEEEEEccccccccccEEEEEEEEEccccccccccHHccEEEccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHccccccEEEcc
Coil and Loop (DISEMBL)
MLMIFVIDTfdrcilvdendrvvghenkynCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQrsgtkvtfplvwtntccshplyreselieeNALGVRNAAQRKLLDElgicaedvpvdeftplgrilykapsdgkwgehELDYLLFIVRDvsvnpnpdevaEYKYVNREQLKELLRKAdageeglklspwFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Flexible Loop (DISEMBL)
MLMIFVIdtfdrcilvdendrvVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYkapsdgkwGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAgeeglklspwfRLVVDNFLFKWWDHLEkgtlnevidmktihklt
Low Complexity Region (SEG)
MLMIFVIDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Disordered region (IsUnstruct)
*LMIFVIDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKT*****
Disordered Region (DISOPRED)
*********FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL*
Disordered Region (DISEMBL)
MLMIFVIDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Disordered Region (DISPRO)
MLMIFVIDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLMIFVIDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
O48964	235	Isopentenyl-diphosphate D	N/A	no	0.951	0.910	0.897	1e-112
Q42553	284	Isopentenyl-diphosphate D	yes	no	0.951	0.753	0.892	1e-112
Q39471	286	Isopentenyl-diphosphate D	N/A	no	0.951	0.748	0.887	1e-111
O48965	309	Isopentenyl-diphosphate D	N/A	no	0.955	0.695	0.869	1e-111
Q38929	291	Isopentenyl-diphosphate D	no	no	0.951	0.735	0.869	1e-110
Q39472	287	Isopentenyl-diphosphate D	N/A	no	0.951	0.745	0.869	1e-109
Q39664	290	Isopentenyl-diphosphate D	N/A	no	0.951	0.737	0.873	1e-109
Q1LZ95	227	Isopentenyl-diphosphate D	yes	no	0.92	0.911	0.575	2e-65
O35586	227	Isopentenyl-diphosphate D	N/A	no	0.92	0.911	0.556	3e-64
P58044	227	Isopentenyl-diphosphate D	no	no	0.92	0.911	0.547	2e-63

>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/214 (89%), Positives = 203/214 (94%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 21  DKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTF 80

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYK
Sbjct: 81  PLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYK 140

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSP
Sbjct: 141 APSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSP 200

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           WFRLVVDNFLFKWWDH+EKGT++E  DMK+IHKL
Sbjct: 201 WFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
Camptotheca acuminata (taxid: 16922)
EC: 5EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/214 (89%), Positives = 202/214 (94%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 71  DECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTF 130

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYK
Sbjct: 131 PLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYK 190

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSP
Sbjct: 191 APSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSP 250

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           WFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct: 251 WFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/214 (88%), Positives = 203/214 (94%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDE DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTF
Sbjct: 73  DECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTF 132

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYK
Sbjct: 133 PLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYK 192

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV+V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSP
Sbjct: 193 APSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSP 252

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           WFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct: 253 WFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia breweri (taxid: 36903)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/215 (86%), Positives = 202/215 (93%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 95  DECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTF 154

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYK
Sbjct: 155 PLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYK 214

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFI+RDV+V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSP
Sbjct: 215 APSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSP 274

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRLVV+NFLFKWWDH+EKGTL +  DMKTIHKLT
Sbjct: 275 WFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Camptotheca acuminata (taxid: 16922)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/214 (86%), Positives = 199/214 (92%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 78  DECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTF 137

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYK
Sbjct: 138 PLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYK 197

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHE+DYLLFIVRDV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSP
Sbjct: 198 APSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSP 257

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           WFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct: 258 WFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 291

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/214 (86%), Positives = 201/214 (93%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDEND+VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 74  DECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTF 133

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYK
Sbjct: 134 PLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYK 193

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFI+RDV+++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSP
Sbjct: 194 APSDGKWGEHELDYLLFIIRDVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSP 253

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           WFRLVVDNFLFKWWDH+EKG+L +  DMKTIHKL
Sbjct: 254 WFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia breweri (taxid: 36903)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/214 (87%), Positives = 200/214 (93%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTF
Sbjct: 77  DECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTF 136

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYK
Sbjct: 137 PLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYK 196

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV ++PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSP
Sbjct: 197 APSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSP 256

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           WFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct: 257 WFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia xantiana (taxid: 3938)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2

 Score =  248 bits (633), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 159/212 (75%), Gaps = 5/212 (2%)

Query: 13  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
           CILVDENDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP 
Sbjct: 21  CILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 79

Query: 73  VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
            +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA 
Sbjct: 80  CFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQ 139

Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
           SD  WGEHE+DY+L + ++V++NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++PWF
Sbjct: 140 SDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWF 197

Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           +++ D FLFKWWD+L +  LN  +D + IH++
Sbjct: 198 QIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/212 (55%), Positives = 162/212 (76%), Gaps = 5/212 (2%)

Query: 13  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
           CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP 
Sbjct: 21  CILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 79

Query: 73  VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
            +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YKA 
Sbjct: 80  CFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQ 139

Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
           SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKEL++KA +GE  +KL+PWF
Sbjct: 140 SDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWF 197

Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           +++VD FLFKWWD+L    L++ +D + IH++
Sbjct: 198 KIIVDTFLFKWWDNL--NHLSQFVDHEKIHRM 227

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Mesocricetus auratus (taxid: 10036)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P58044|IDI1_MOUSE Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/212 (54%), Positives = 161/212 (75%), Gaps = 5/212 (2%)

Query: 13  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
           CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP 
Sbjct: 21  CILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 79

Query: 73  VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
            +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA 
Sbjct: 80  CFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQ 139

Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
           SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+PWF
Sbjct: 140 SDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWF 197

Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           +++ D FLFKWWD+L    L+  +D + IH+L
Sbjct: 198 KIIADTFLFKWWDNL--NHLSPFVDHEKIHRL 227

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
35186998	301	isopentenyl pyrophosphate isomerase [Pue	0.955	0.714	0.930	1e-116
356531894	295	PREDICTED: isopentenyl-diphosphate Delta	0.955	0.728	0.920	1e-115
363807460	301	uncharacterized protein LOC100789313 [Gl	0.955	0.714	0.920	1e-115
125558706	722	hypothetical protein OsI_26387 [Oryza sa	0.951	0.296	0.892	1e-115
357507779	287	Isopentenyl-diphosphate Delta-isomerase	0.955	0.749	0.916	1e-114
255635611	238	unknown [Glycine max]	0.955	0.903	0.920	1e-114
258547335	319	isopentenyl diphosphate isomerase [Buple	0.955	0.673	0.906	1e-113
13603408	235	isopentenyl diphosphate isomerase 2 [Nic	0.955	0.914	0.911	1e-113
388502516	287	unknown [Medicago truncatula]	0.955	0.749	0.911	1e-113
19568937	235	isopentenyl pyrophosphate isomerase IDI2	0.955	0.914	0.920	1e-113

>gi|35186998|gb|AAQ84167.1| isopentenyl pyrophosphate isomerase [Pueraria montana var. lobata]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/215 (93%), Positives = 208/215 (96%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDENDRVVGH++KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 87  DECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTF 146

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGRILYK
Sbjct: 147 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIVAEDVPVDQFTPLGRILYK 206

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYVNR+QLKELLRKADAGEEGLKLSP
Sbjct: 207 APSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVNRDQLKELLRKADAGEEGLKLSP 266

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRLVVDNFLFKWWDHLE+GTL EV DMKTIHKLT
Sbjct: 267 WFRLVVDNFLFKWWDHLEQGTLGEVTDMKTIHKLT 301

Source: Pueraria montana var. lobata

Species: Pueraria montana

Genus: Pueraria

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531894|ref|XP_003534511.1| PREDICTED: isopentenyl-diphosphate Delta-isomerase II-like [Glycine max]

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/215 (92%), Positives = 207/215 (96%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDENDRVVGH++KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 81  DECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTF 140

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI+ENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGRILYK
Sbjct: 141 PLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIVAEDVPVDKFTPLGRILYK 200

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYVNR+QLKELLRKADAGEEGLKLSP
Sbjct: 201 APSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVNRDQLKELLRKADAGEEGLKLSP 260

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRLVVDNFLFKWWDHLE+GTL E  DMKTIHKLT
Sbjct: 261 WFRLVVDNFLFKWWDHLEQGTLGEATDMKTIHKLT 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807460|ref|NP_001242135.1| uncharacterized protein LOC100789313 [Glycine max] gi|255647098|gb|ACU24017.1| unknown [Glycine max]

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/215 (92%), Positives = 207/215 (96%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDENDRVVGH++KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 87  DECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTF 146

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI+ENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGRILYK
Sbjct: 147 PLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIVAEDVPVDQFTPLGRILYK 206

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYVNR+QLKELLRKADAGEEGLKLSP
Sbjct: 207 APSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVNRDQLKELLRKADAGEEGLKLSP 266

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRLVVDNFLFKWWDHLE+G L EV DMKTIHKLT
Sbjct: 267 WFRLVVDNFLFKWWDHLERGALGEVTDMKTIHKLT 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125558706|gb|EAZ04242.1| hypothetical protein OsI_26387 [Oryza sativa Indica Group]

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 191/214 (89%), Positives = 201/214 (93%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDE D VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 24  DECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTF 83

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVD+FTPLGR+LYK
Sbjct: 84  PLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTPLGRMLYK 143

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV V PNPDEVA+ KYV+REQLKEL+RKADAGEEGLKLSP
Sbjct: 144 APSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRKADAGEEGLKLSP 203

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           WFRLVVDNFL  WWDH+EKGTLNE +DM+TIHKL
Sbjct: 204 WFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHKL 237

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507779|ref|XP_003624178.1| Isopentenyl-diphosphate Delta-isomerase [Medicago truncatula] gi|355499193|gb|AES80396.1| Isopentenyl-diphosphate Delta-isomerase [Medicago truncatula]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/215 (91%), Positives = 207/215 (96%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDENDR VGHE+KYNCHL EKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 73  DECILVDENDRAVGHESKYNCHLWEKIESENLLHRAFSVFLFNSKYELLLQQRSSTKVTF 132

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI A+DVPVD+FTPLGRILYK
Sbjct: 133 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGILAQDVPVDQFTPLGRILYK 192

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHE+DYLLFIVRDV+VNPNPDEVA+ KYVNR+QLKELLRK+DAGEEGLKLSP
Sbjct: 193 APSDGKWGEHEVDYLLFIVRDVNVNPNPDEVADIKYVNRDQLKELLRKSDAGEEGLKLSP 252

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRL+VDNFLFKWWDHLE+GTL EVIDMKTIHKLT
Sbjct: 253 WFRLIVDNFLFKWWDHLEQGTLKEVIDMKTIHKLT 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635611|gb|ACU18155.1| unknown [Glycine max]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/215 (92%), Positives = 207/215 (96%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDENDRVVGH++KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 24  DECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTF 83

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI+ENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGRILYK
Sbjct: 84  PLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIVAEDVPVDKFTPLGRILYK 143

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYVNR+QLKELLRKADAGEEGLKLSP
Sbjct: 144 APSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVNRDQLKELLRKADAGEEGLKLSP 203

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRLVVDNFLFKWWDHLE+GTL E  DMKTIHKLT
Sbjct: 204 WFRLVVDNFLFKWWDHLEQGTLGEATDMKTIHKLT 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|258547335|gb|ACV74320.1| isopentenyl diphosphate isomerase [Bupleurum chinense]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/215 (90%), Positives = 204/215 (94%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDEND VVGHENKYNCHLMEKIES NLLHRAF+VFLFNSKYELLLQQRS TKVTF
Sbjct: 105 DECILVDENDHVVGHENKYNCHLMEKIESENLLHRAFTVFLFNSKYELLLQQRSATKVTF 164

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELIEENALG RNAAQRKLLDELGI AEDVPVD+F P+GR+LYK
Sbjct: 165 PLVWTNTCCSHPLYRESELIEENALGARNAAQRKLLDELGIPAEDVPVDQFLPVGRMLYK 224

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV VNPNPDEVA+ KYVN++QLKELLRKADAGEEGLKLSP
Sbjct: 225 APSDGKWGEHELDYLLFIVRDVKVNPNPDEVADIKYVNKDQLKELLRKADAGEEGLKLSP 284

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRLVVDNFL+KWWDH+EKGTL EV DMKTIHKLT
Sbjct: 285 WFRLVVDNFLYKWWDHVEKGTLGEVADMKTIHKLT 319

Source: Bupleurum chinense

Species: Bupleurum chinense

Genus: Bupleurum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13603408|dbj|BAB40974.1| isopentenyl diphosphate isomerase 2 [Nicotiana tabacum]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/215 (91%), Positives = 207/215 (96%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDEND+VVGH+ KYNCHLME+IESLNLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 21  DECILVDENDQVVGHDTKYNCHLMERIESLNLLHRAFSVFLFNSKYELLLQQRSATKVTF 80

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGR+LYK
Sbjct: 81  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIPAEDVPVDQFTPLGRMLYK 140

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYVN+EQLKELLRKADAGE+GLKLSP
Sbjct: 141 APSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVNQEQLKELLRKADAGEDGLKLSP 200

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRLVVDNFLFKWWDH+EKGT+ E  DMKTIHKLT
Sbjct: 201 WFRLVVDNFLFKWWDHVEKGTIQEAADMKTIHKLT 235

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502516|gb|AFK39324.1| unknown [Medicago truncatula]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/215 (91%), Positives = 205/215 (95%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDENDR VGHE+KYNCHL EKIES NLLHRAFSVFLFNSKYE LLQQRS TKVTF
Sbjct: 73  DECILVDENDRAVGHESKYNCHLWEKIESENLLHRAFSVFLFNSKYESLLQQRSSTKVTF 132

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI A+DVPVD+FTPLGRILYK
Sbjct: 133 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGILAQDVPVDQFTPLGRILYK 192

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHE+DYLLFIVRDV+VNPNPDEVA+ KYVNR+QLKELLRK DAGEEGLKLSP
Sbjct: 193 APSDGKWGEHEVDYLLFIVRDVNVNPNPDEVADIKYVNRDQLKELLRKFDAGEEGLKLSP 252

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRL+VDNFLFKWWDHLE+GTL EVIDMKTIHKLT
Sbjct: 253 WFRLIVDNFLFKWWDHLEQGTLKEVIDMKTIHKLT 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19568937|gb|AAL91979.1|AF483190_1 isopentenyl pyrophosphate isomerase IDI2 [Melaleuca alternifolia]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/215 (92%), Positives = 202/215 (93%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVD+ND VVGHE+KYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 21  DECILVDQNDNVVGHESKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSATKVTF 80

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           PLVWTNTCCSHPLYRESELI ENALG RNAAQRKLLDELGI AEDVPVDEF PLGRILYK
Sbjct: 81  PLVWTNTCCSHPLYRESELIAENALGARNAAQRKLLDELGISAEDVPVDEFIPLGRILYK 140

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           APSDGKWGEHELDYLLFIVRDV VNPNPDEVA+ KYVNREQLKELLRKADAGE GLKLSP
Sbjct: 141 APSDGKWGEHELDYLLFIVRDVKVNPNPDEVADIKYVNREQLKELLRKADAGEGGLKLSP 200

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           WFRLVVDNFLFKWWDH+EKGTL E  DMKTIHKLT
Sbjct: 201 WFRLVVDNFLFKWWDHVEKGTLKEAADMKTIHKLT 235

Source: Melaleuca alternifolia

Species: Melaleuca alternifolia

Genus: Melaleuca

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2075412	284	IPP2 "isopentenyl pyrophosphat	0.951	0.753	0.892	4.1e-104
TAIR|locus:2171382	291	IPP1 "isopentenyl diphosphate	0.951	0.735	0.869	2.6e-102
UNIPROTKB|Q13907	227	IDI1 "Isopentenyl-diphosphate	0.928	0.920	0.565	6.9e-63
UNIPROTKB|Q1LZ95	227	IDI1 "Isopentenyl-diphosphate	0.928	0.920	0.570	1.4e-62
UNIPROTKB|O35586	227	IDI1 "Isopentenyl-diphosphate	0.928	0.920	0.551	4.8e-62
UNIPROTKB|I3LDY2	287	LOC100739304 "Uncharacterized	0.928	0.728	0.556	1.6e-61
MGI|MGI:2442264	227	Idi1 "isopentenyl-diphosphate	0.928	0.920	0.542	2.1e-61
RGD|621835	227	Idi1 "isopentenyl-diphosphate	0.928	0.920	0.537	9e-61
UNIPROTKB|F1NZX3	233	IDI1 "Uncharacterized protein"	0.928	0.896	0.546	1.9e-60
ZFIN|ZDB-GENE-050913-44	278	idi1 "isopentenyl-diphosphate	0.928	0.751	0.542	1.7e-59

TAIR|locus:2075412 IPP2 "isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 191/214 (89%), Positives = 202/214 (94%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             D CILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct:    71 DECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTF 130

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             PLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYK
Sbjct:   131 PLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYK 190

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             APSDGKWGEHELDYLLFIVRDV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSP
Sbjct:   191 APSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSP 250

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct:   251 WFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0006096 "glycolysis" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=TAS

TAIR|locus:2171382 IPP1 "isopentenyl diphosphate isomerase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 186/214 (86%), Positives = 199/214 (92%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             D CILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct:    78 DECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTF 137

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             PLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYK
Sbjct:   138 PLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYK 197

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             APSDGKWGEHE+DYLLFIVRDV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSP
Sbjct:   198 APSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSP 257

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct:   258 WFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 291

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA;IMP

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009240 "isopentenyl diphosphate biosynthetic process" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=TAS

UNIPROTKB|Q13907 IDI1 "Isopentenyl-diphosphate Delta-isomerase 1" [Homo sapiens (taxid:9606)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 121/214 (56%), Positives = 162/214 (75%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             + CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct:    19 EMCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITF 77

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             P  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YK
Sbjct:    78 PGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYK 137

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             A SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++P
Sbjct:   138 AQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITP 195

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct:   196 WFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006695 "cholesterol biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q1LZ95 IDI1 "Isopentenyl-diphosphate Delta-isomerase 1" [Bos taurus (taxid:9913)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 122/214 (57%), Positives = 160/214 (74%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             + CILVDENDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct:    19 EMCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITF 77

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             P  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YK
Sbjct:    78 PGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYK 137

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             A SD  WGEHE+DY+L + ++V++NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++P
Sbjct:   138 AQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITP 195

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct:   196 WFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|O35586 IDI1 "Isopentenyl-diphosphate Delta-isomerase 1" [Mesocricetus auratus (taxid:10036)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 118/214 (55%), Positives = 163/214 (76%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             + CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct:    19 EMCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITF 77

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             P  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YK
Sbjct:    78 PGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYK 137

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             A SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKEL++KA +GE  +KL+P
Sbjct:   138 AQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTP 195

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WF+++VD FLFKWWD+L    L++ +D + IH++
Sbjct:   196 WFKIIVDTFLFKWWDNLNH--LSQFVDHEKIHRM 227

GO:0005777 "peroxisome" evidence=IDA

UNIPROTKB|I3LDY2 LOC100739304 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 119/214 (55%), Positives = 159/214 (74%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             + CIL+DENDR +G E K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct:    79 EMCILIDENDRRIGAETKKNCHLNENIKK-GLLHRAFSVFLFNTENKLLLQQRSDAKITF 137

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             P  ++N CCSHPL    EL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YK
Sbjct:   138 PGCFSNACCSHPLSTPGELEENDAIGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIYYK 197

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             A SDG WGEHE+DY+L + +DV++NP+P+E+  + YV++E+LKELLRKA  GE  +K++P
Sbjct:   198 AQSDGIWGEHEIDYILLMKKDVTLNPDPNEIKSHCYVSQEELKELLRKAARGE--VKVTP 255

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WF+++ D FLF WWD+L     N+ +D + IH++
Sbjct:   256 WFQMIADRFLFHWWDNLNHW--NQFVDHEKIHRM 287

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

MGI|MGI:2442264 Idi1 "isopentenyl-diphosphate delta isomerase" [Mus musculus (taxid:10090)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 116/214 (54%), Positives = 162/214 (75%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             + CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct:    19 EMCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITF 77

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             P  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YK
Sbjct:    78 PGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYK 137

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             A SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+P
Sbjct:   138 AQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTP 195

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct:   196 WFKIIADTFLFKWWDNLNH--LSPFVDHEKIHRL 227

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=ISO

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|621835 Idi1 "isopentenyl-diphosphate delta isomerase 1" [Rattus norvegicus (taxid:10116)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 115/214 (53%), Positives = 160/214 (74%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             + CIL+DEND  +G + K NCHL E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct:    19 EMCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITF 77

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             P  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YK
Sbjct:    78 PGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYK 137

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             A SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKE+L+K   GE  +KL+P
Sbjct:   138 AQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTP 195

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WF+++ D FLFKWWD+L    L+  +D + IH++
Sbjct:   196 WFKIIADAFLFKWWDNLNH--LSPFVDHEKIHRM 227

GO:0000287 "magnesium ion binding" evidence=IEA;ISO

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0006695 "cholesterol biosynthetic process" evidence=TAS

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA;ISO

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

UNIPROTKB|F1NZX3 IDI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 117/214 (54%), Positives = 158/214 (73%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             + CIL++ENDR +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct:    25 EMCILIEENDRRIGADTKKNCHLNENIDR-GLLHRAFSVFLFNTENKLLLQQRSNAKITF 83

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             P  +TNTCCSHPL    EL E +A+GVR AAQR++  ELGI  E V  +E   L RI YK
Sbjct:    84 PDCFTNTCCSHPLSHPLELEENDAIGVRRAAQRRMKAELGIPMEQVTPEEIFYLTRIHYK 143

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             A SDG WGEHE+DY+LF+ +DV++NP+P+E+  Y YV +++LK+LL KA   E  +K++P
Sbjct:   144 AKSDGIWGEHEIDYILFVQKDVTLNPDPNEIQSYCYVTQKELKQLLDKASRNE--VKITP 201

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WF+L+ + FLFKWWD+L    LN+ +D + IH++
Sbjct:   202 WFKLIAETFLFKWWDNLPH--LNKFVDHEKIHRM 233

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-050913-44 idi1 "isopentenyl-diphosphate delta isomerase 1" [Danio rerio (taxid:7955)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 116/214 (54%), Positives = 157/214 (73%)

Query:    11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
             + CIL+DEND+ +G ++K NCHL   I+   LLHRAFSVFLFNS+ +LLLQQRS  K+TF
Sbjct:    70 EMCILIDENDKKIGADSKKNCHLNSNIDK-GLLHRAFSVFLFNSEEKLLLQQRSDAKITF 128

Query:    71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
             P  +TNTCCSHPL+  SEL E++A+GVR AAQR+L  ELGI  + V  +E T L RI YK
Sbjct:   129 PGCFTNTCCSHPLHTTSELEEQDAIGVRRAAQRRLQAELGIPMDQVLPEEMTYLTRIHYK 188

Query:   131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
             A SDG WGEHE+DY++F+ +DV +NP+P+E+  + YV++E+LKE+L KA   E  L ++P
Sbjct:   189 AQSDGVWGEHEIDYIIFMQKDVDLNPDPNEIQSHCYVSKEELKEILEKAKRKE--LLITP 246

Query:   191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
             WF L+ + FLFKWW++L    L   I+   IH++
Sbjct:   247 WFSLIAETFLFKWWENLRN--LKPFIEHDRIHRM 278

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35586	IDI1_MESAU	5, ., 3, ., 3, ., 2	0.5566	0.92	0.9118	N/A	no
Q39471	IDI2_CLABR	5, ., 3, ., 3, ., 2	0.8878	0.9511	0.7482	N/A	no
Q39472	IDI1_CLABR	5, ., 3, ., 3, ., 2	0.8691	0.9511	0.7456	N/A	no
Q5R8R6	IDI1_PONAB	5, ., 3, ., 3, ., 2	0.5660	0.92	0.9118	yes	no
Q42553	IDI2_ARATH	5, ., 3, ., 3, ., 2	0.8925	0.9511	0.7535	yes	no
Q4R4W5	IDI1_MACFA	5, ., 3, ., 3, ., 2	0.5754	0.92	0.9118	N/A	no
Q39664	IDI2_CLAXA	5, ., 3, ., 3, ., 2	0.8738	0.9511	0.7379	N/A	no
Q10132	IDI1_SCHPO	5, ., 3, ., 3, ., 2	0.5172	0.8488	0.8340	yes	no
Q1LZ95	IDI1_BOVIN	5, ., 3, ., 3, ., 2	0.5754	0.92	0.9118	yes	no
O48964	IDI1_CAMAC	5, ., 3, ., 3, ., 2	0.8971	0.9511	0.9106	N/A	no
O48965	IDI2_CAMAC	5, ., 3, ., 3, ., 2	0.8697	0.9555	0.6957	N/A	no
Q9NH02	IDI_DICDI	5, ., 3, ., 3, ., 2	0.4875	0.8622	0.8117	yes	no
O35760	IDI1_RAT	5, ., 3, ., 3, ., 2	0.5424	0.92	0.9118	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.3.2	0.994
3rd Layer	5.3.3	0.998

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
PLN02552	247	PLN02552, PLN02552, isopentenyl-diphosphate delta-	1e-143
cd02885	165	cd02885, IPP_Isomerase, Isopentenyl diphosphate (I	2e-81
TIGR02150	158	TIGR02150, IPP_isom_1, isopentenyl-diphosphate del	2e-74
COG1443	185	COG1443, Idi, Isopentenyldiphosphate isomerase [Li	3e-59
PRK03759	184	PRK03759, PRK03759, isopentenyl-diphosphate delta-	1e-38
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-15
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	2e-11
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	3e-11
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	1e-10
PLN02791	770	PLN02791, PLN02791, Nudix hydrolase homolog	8e-08
PRK15393	180	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisio	8e-04

>gnl|CDD|215303 PLN02552, PLN02552, isopentenyl-diphosphate delta-isomerase

 Score =  399 bits (1026), Expect = e-143
 Identities = 173/231 (74%), Positives = 186/231 (80%), Gaps = 22/231 (9%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           D CILVDEND VVGH++KYNCHL EKIE   LLHRAFSVFLFNSKYELLLQQR+ TKVTF
Sbjct: 23  DECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTF 82

Query: 71  PLVWTNTCCSHPLY--------RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122
           PLVWTNTCCSHPLY        RESELI+ N LGV+NAAQRKLL ELGI AEDVPVD+FT
Sbjct: 83  PLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFT 142

Query: 123 PLGRILYKAPSD------GKWGEHELDYLLFI--VRDVSVNPNPDEVAEYKYVNREQLKE 174
            L R+ YKA  D      GKWGEHELDYLLFI  VRDV VNPNPDEVA+ KYVNRE+LKE
Sbjct: 143 FLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELKE 202

Query: 175 LLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
           ++RK    E GLKLSPWFRL+VDNFL KWWD LEKGT  E +DMKTIHKL 
Sbjct: 203 MMRK----ESGLKLSPWFRLIVDNFLMKWWDDLEKGT--EAVDMKTIHKLM 247

Length = 247

>gnl|CDD|239218 cd02885, IPP_Isomerase, Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

 Score =  239 bits (613), Expect = 2e-81
 Identities = 89/187 (47%), Positives = 115/187 (61%), Gaps = 23/187 (12%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           +  ILVDE+D  +G   K   HL        LLHRAFSVFLFNSK  LLLQ+R+ +K TF
Sbjct: 2   ELVILVDEDDNPIGTAEKLEAHLKG-----TLLHRAFSVFLFNSKGRLLLQRRALSKYTF 56

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           P +WTNTCCSHPL  E         GV++AAQR+L +ELGI            L R  Y+
Sbjct: 57  PGLWTNTCCSHPLPGE---------GVKDAAQRRLREELGI----TGDLLELVLPRFRYR 103

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           AP DG   EHE+D++ F   DV++ PNPDEV+EY++V+ E LKEL+  A         +P
Sbjct: 104 APDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA-----PEAFTP 158

Query: 191 WFRLVVD 197
           WFRL+++
Sbjct: 159 WFRLILE 165

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mammals and plants. Despite sequence variations (mainly at the N-terminus), the core structure is highly conserved. Length = 165

>gnl|CDD|233749 TIGR02150, IPP_isom_1, isopentenyl-diphosphate delta-isomerase, type 1

 Score =  221 bits (566), Expect = 2e-74
 Identities = 90/184 (48%), Positives = 114/184 (61%), Gaps = 26/184 (14%)

Query: 13  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
            ILVDEND  +G  +K   HL E       LHRAFSVFLFN + +LLLQ+R+ +K+T+P 
Sbjct: 1   VILVDENDNPIGTASKAEVHLQE-----TPLHRAFSVFLFNEEGQLLLQRRALSKITWPG 55

Query: 73  VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
           VWTN+CCSHPL  E E           AA R+L +ELGI A+DVP    T L R  Y+A 
Sbjct: 56  VWTNSCCSHPLPGELE-----------AAIRRLREELGIPADDVP---LTVLPRFSYRAR 101

Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
               WGEHEL  + F    V +NPNP+EVAEY++V+ E+LKE+L+   AG      SPWF
Sbjct: 102 D--AWGEHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAPWAG-----FSPWF 154

Query: 193 RLVV 196
           R+  
Sbjct: 155 RIQA 158

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 158

>gnl|CDD|224360 COG1443, Idi, Isopentenyldiphosphate isomerase [Lipid metabolism]

 Score =  184 bits (469), Expect = 3e-59
 Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 21/198 (10%)

Query: 12  RCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 71
             IL++++D   G   K   H  +       LHRAFS FLFN + +LLL +R+ +K T+P
Sbjct: 5   DVILLNDDDVPTGTAEKLAAHTGDTPR----LHRAFSSFLFNERGQLLLTRRALSKKTWP 60

Query: 72  LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 131
            VWTN+ CSHPL  ES           +AA+R+L  ELGI  +     E  P  R  Y+A
Sbjct: 61  GVWTNSVCSHPLPGES---------NEDAARRRLAYELGIEPDQYDKLEILP--RFRYRA 109

Query: 132 PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW 191
                  E+E+  +L    D +++PNPDEV +Y++V+ E LKE++            SPW
Sbjct: 110 ADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVD-----ATPWAFSPW 164

Query: 192 FRLVVDNFLFKWWDHLEK 209
           F +  +N   +  D L  
Sbjct: 165 FVIQAENDEAR-KDLLSF 181

Length = 185

>gnl|CDD|235156 PRK03759, PRK03759, isopentenyl-diphosphate delta-isomerase; Provisional

 Score =  132 bits (333), Expect = 1e-38
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 23/189 (12%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           +  +L+DE     G   K   H      +   LH AFS +LF++   LL+ +R+ +K T+
Sbjct: 6   ELVVLLDEQGVPTGTAEKAAAH-----TADTPLHLAFSCYLFDADGRLLVTRRALSKKTW 60

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           P VWTN+CC HP   ES         + +A  R+  +ELG+       D    L    Y+
Sbjct: 61  PGVWTNSCCGHPQPGES---------LEDAVIRRCREELGV----EITDLELVLPDFRYR 107

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           A       E+E+  +       ++ PNPDEV +Y++V+     +LLR  DA       SP
Sbjct: 108 ATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVD---PADLLRAVDAT--PWAFSP 162

Query: 191 WFRLVVDNF 199
           W  L   N 
Sbjct: 163 WMVLQAANL 171

Length = 184

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 69.8 bits (171), Expect = 2e-15
 Identities = 46/142 (32%), Positives = 61/142 (42%), Gaps = 18/142 (12%)

Query: 43  LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 102
             RA  V L N   E+LL +RS   V FP +W             E  EE       AA 
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSRPPV-FPGLWELPGGKVE---PGESPEE-------AAV 49

Query: 103 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEV 161
           R+L +E G+      V     LG + Y AP     GEH   +L  ++       PN DEV
Sbjct: 50  RELEEETGL-----RVLLLLLLGVLEYPAPGRD-GGEHVHVFLAELLGGEPEPQPNEDEV 103

Query: 162 AEYKYVNREQLKELLRKADAGE 183
           +E ++V  E+L ELL   +  E
Sbjct: 104 SEVRWVPLEELLELLLAGEIRE 125

Length = 133

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 18/143 (12%)

Query: 44  HRAFSVFLFNSKYE---LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNA 100
           HR F  ++         +LLQ+RS  K T+P +W  +   H L  E+ L +         
Sbjct: 2   HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLED--------- 52

Query: 101 AQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN---PN 157
             R+L +ELG+   DV  D+  PLG    +    GK  + E  ++      V +      
Sbjct: 53  GIRELEEELGL---DVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQ 109

Query: 158 PDEVAEYKYVNREQLKELLRKAD 180
            +EVA    +  ++  ELL + D
Sbjct: 110 KEEVAGVVLIPLDEFAELLEEED 132

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 24/133 (18%)

Query: 49  VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE 108
           V +FNSK ELLLQ+RS  K  +P +W  +   H    E+            AA+R++ +E
Sbjct: 5   VCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS----------TAAEREVKEE 54

Query: 109 LGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN---PNPDEVAEYK 165
           LG    ++   E  PL R  ++A           DY LF   DV +       +EV E K
Sbjct: 55  LG---LELDFSELRPLFRYFFEAEG-------FDDYYLF-YADVEIGKLILQKEEVDEVK 103

Query: 166 YVNREQLKELLRK 178
           +V+++++  L+  
Sbjct: 104 FVSKDEIDGLIGH 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 19/143 (13%)

Query: 45  RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRK 104
           RA  +F+FNS+ +L + +R+ TK   P  W           ES L           AQR+
Sbjct: 1   RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQ---------NAQRE 51

Query: 105 LLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEY 164
           L +ELGI  + V     TPLG   Y    +  WG+     +   V D  +    +EV E 
Sbjct: 52  LEEELGI--DGVQ---LTPLGLFYYDTDGNRVWGK-----VFSCVYDGPLKLQEEEVEEI 101

Query: 165 KYVNREQLKELLRKADAGEEGLK 187
            +++  ++ +     +   + L 
Sbjct: 102 TWLSINEILQFKEGENITPDSLS 124

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|215425 PLN02791, PLN02791, Nudix hydrolase homolog

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 19/144 (13%)

Query: 44  HRAFSVFLF-NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 102
           HRA  V+++  S  ELLLQ+R+  K ++P  W  +   H    ++ L+         +AQ
Sbjct: 32  HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLL---------SAQ 82

Query: 103 RKLLDELGICAEDVPVDEFTPLGRILYK-APSDGKWGEHELD--YLLFIVRDVSVNP--- 156
           R+L +ELGI    +P D F  L   L +   +DGK+  +E +  YL+  +  + +     
Sbjct: 83  RELEEELGI---ILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTL 139

Query: 157 NPDEVAEYKYVNREQLKELLRKAD 180
              EV+  KY++ E+ K  L K D
Sbjct: 140 QESEVSAVKYMSIEEYKSALAKED 163

Length = 770

>gnl|CDD|185291 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 20/124 (16%)

Query: 15  LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 74
           +V+EN+ V+   ++      E++ +  L HRA  + + +   ++L+Q+R+ TK   P   
Sbjct: 14  IVNENNEVIAQASR------EQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLP-GM 66

Query: 75  TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 134
            +      +    +L+E        +A+R+  +ELGI    VP   F   G+  ++  + 
Sbjct: 67  LDATAGGVVQAGEQLLE--------SARREAEEELGI--AGVP---FAEHGQFYFEDENC 113

Query: 135 GKWG 138
             WG
Sbjct: 114 RVWG 117

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PLN02552	247	isopentenyl-diphosphate delta-isomerase	100.0
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	100.0
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	100.0
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	100.0
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	100.0
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.97
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.97
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.96
PLN02791	770	Nudix hydrolase homolog	99.96
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.92
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.89
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.88
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.84
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.81
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.8
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.8
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.79
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.79
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.78
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.78
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.78
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.78
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.78
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.77
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.77
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.77
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.76
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.76
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.76
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.76
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.76
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.76
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.76
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.75
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.75
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.75
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.74
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.74
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.73
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.73
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.73
PLN02839	372	nudix hydrolase	99.72
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.71
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.71
PLN02325	144	nudix hydrolase	99.7
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.69
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.69
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.69
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.69
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.69
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.68
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.68
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.68
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.67
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.67
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.66
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.66
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.65
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.65
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.64
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.64
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.64
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.63
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.63
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.62
PRK10707	190	putative NUDIX hydrolase; Provisional	99.62
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.59
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.57
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.57
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.56
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.56
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.54
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.52
PLN02709	222	nudix hydrolase	99.52
PRK08999	312	hypothetical protein; Provisional	99.48
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.43
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.43
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.36
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.35
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.35
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.25
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.25
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.17
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	99.16
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.16
PLN03143	291	nudix hydrolase; Provisional	99.11
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.11
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	99.1
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.04
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.84
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.51
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.48
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.32
COG4112	203	Predicted phosphoesterase (MutT family) [General f	98.03
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	97.79
PRK10880	350	adenine DNA glycosylase; Provisional	96.46
KOG4195	275	consensus Transient receptor potential-related cha	94.91
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	94.2
PF14443	126	DBC1: DBC1	92.98
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	92.83
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	91.23
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	86.09
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	85.51
PRK13910	289	DNA glycosylase MutY; Provisional	82.66

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=100.00  E-value=1e-40  Score=288.69  Aligned_cols=210  Identities=79%  Similarity=1.296  Sum_probs=182.2

Q ss_pred             cceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCC--
Q 027303           10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES--   87 (225)
Q Consensus        10 ~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs--   87 (225)
                      +|.|.+||++++++|..+|+++|....+..++++|++++++|+|++|++|||||+..|..|||+|+.++|||+..||+  
T Consensus        22 ~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~  101 (247)
T PLN02552         22 EDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPN  101 (247)
T ss_pred             cCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccc
Confidence            589999999999999999999997555666899999999999999999999999999999999999999999999854  


Q ss_pred             ------hhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCC------CCCcceEEEEEEEEec--Ccc
Q 027303           88 ------ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD------GKWGEHELDYLLFIVR--DVS  153 (225)
Q Consensus        88 ------~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~------~~~~e~~~~~v~~~~~--~~~  153 (225)
                            .++.++..++.+||+||++|||||.+..++++++.+++++.|..+..      ++|.+++++++|+...  ...
T Consensus       102 e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~  181 (247)
T PLN02552        102 EVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVK  181 (247)
T ss_pred             cccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCc
Confidence                  23344455578999999999999998766666788888888887654      6677788888776532  347


Q ss_pred             ccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHhhhcccccccccCcCceeecC
Q 027303          154 VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT  225 (225)
Q Consensus       154 ~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (225)
                      +.++++|+.+++|++++++.+++.+.    .|..|+||++.++++|+..||++|++.  .|++||+.||||.
T Consensus       182 l~lq~eEV~~~~wvs~~el~~~~~~~----~~~~~tpw~~~~~~~~l~~w~~~~~~~--~~~~~~~~i~~~~  247 (247)
T PLN02552        182 VNPNPDEVADVKYVNREELKEMMRKE----SGLKLSPWFRLIVDNFLMKWWDDLEKG--TEAVDMKTIHKLM  247 (247)
T ss_pred             ccCCHHHhheEEEEeHHHHHHHHhhc----CCcccCHHHHHHHHHHHHHHHhhhcch--hhccChhhheecC
Confidence            78899999999999999999998753    368899999999999999999999998  9999999999983

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.3e-39  Score=265.91  Aligned_cols=210  Identities=65%  Similarity=1.107  Sum_probs=193.1

Q ss_pred             cCccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCC
Q 027303            7 IDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE   86 (225)
Q Consensus         7 ~~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE   86 (225)
                      ..+.|.|.+||+|++++|..++++||.|.++. ++++||++++|++|+++++||||||..|..||+.|..++++|.-...
T Consensus        16 ~~l~e~ci~VDenD~~IG~~tk~~cHl~eni~-kglLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~   94 (225)
T KOG0142|consen   16 KLLAENCILVDENDNVIGAGTKKNCHLMENIE-KGLLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNP   94 (225)
T ss_pred             HHHhhheEeeccccccccchhhhhhhcchhHH-hhhhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCCh
Confidence            44788999999999999999999999999997 56999999999999999999999999999999999999999987443


Q ss_pred             ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEE
Q 027303           87 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY  166 (225)
Q Consensus        87 s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~W  166 (225)
                      ..+.+.++.+...||+|.|+-|+||....++++++.++++++|..++++.|++|+++|+++...+..++++++|+.+++|
T Consensus        95 ~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ry  174 (225)
T KOG0142|consen   95 GELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRY  174 (225)
T ss_pred             hhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhhe
Confidence            33456678899999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             eCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHhhhcccccccccCcCceeec
Q 027303          167 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL  224 (225)
Q Consensus       167 v~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (225)
                      |+.+||..++++.+     ..|+|||+.+.++|++.||+++.+  +++..++..||++
T Consensus       175 vs~eelkel~~~~~-----~~~TPWfkli~~~~l~~WW~~l~~--~~~~~~~~~i~r~  225 (225)
T KOG0142|consen  175 VSREELKELVAKAS-----AGFTPWFKLISENFLFKWWDDLDK--LTEFEEDTNIHRL  225 (225)
T ss_pred             ecHHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHhhhcc--cccCccccccccC
Confidence            99999999999864     469999999999999999999986  6788899999985

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=100.00  E-value=1.9e-32  Score=223.65  Aligned_cols=163  Identities=53%  Similarity=0.877  Sum_probs=136.0

Q ss_pred             cceEEEEcCCCCEeeeeecccccchhhcccCCcc-eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCCh
Q 027303           10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLL-HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE   88 (225)
Q Consensus        10 ~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~-h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~   88 (225)
                      +|+|++||++++++|+.+|+.+|.      ++.+ |++++++++|++|++||+||+..+..+||.|++|+||++++||+ 
T Consensus         1 ~e~~~~~d~~~~~~g~~~r~~~~~------~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt-   73 (165)
T cd02885           1 EELVILVDEDDNPIGTAEKLEAHL------KGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG-   73 (165)
T ss_pred             CcEEEEECCCCCCccccCHHHHhh------cCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC-
Confidence            599999999999999999998875      6777 99999999999999999999988889999999988999999999 


Q ss_pred             hhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeC
Q 027303           89 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN  168 (225)
Q Consensus        89 ~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~  168 (225)
                              +++||+||++||||+.+.....   . ++.+.|..+....+..+.+.++|.+.......++++|+.+++|++
T Consensus        74 --------~~eaa~REl~EEtGl~~~~~~~---~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~  141 (165)
T cd02885          74 --------VKDAAQRRLREELGITGDLLEL---V-LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVS  141 (165)
T ss_pred             --------HHHHHHHHHHHHhCCCccchhh---c-cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCCCccceeEEEEEC
Confidence                    8999999999999999874322   1 355556544333334455667777765555556778999999999


Q ss_pred             HHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303          169 REQLKELLRKADAGEEGLKLSPWFRLVV  196 (225)
Q Consensus       169 ~eel~~~~~~~~~~~~~~~~~p~~~~~~  196 (225)
                      ++++.+++.++     +..++||+..++
T Consensus       142 ~~el~~~~~~~-----~~~~~~~~~~~~  164 (165)
T cd02885         142 LEDLKELVAAA-----PEAFTPWFRLIL  164 (165)
T ss_pred             HHHHHHHHHhC-----chhcCHHHHHHh
Confidence            99999999886     579999999876

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=100.00  E-value=5.2e-32  Score=225.11  Aligned_cols=170  Identities=32%  Similarity=0.526  Sum_probs=139.5

Q ss_pred             cCccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCC
Q 027303            7 IDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE   86 (225)
Q Consensus         7 ~~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE   86 (225)
                      |+++|+|++||+||+++|..+|+++|.     .++.+|++++++++|++|++||+||+..+..+||.|++|+||++++||
T Consensus         2 ~~~~E~~~~vd~~~~~~g~~~r~~~~~-----~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE   76 (184)
T PRK03759          2 MMETELVVLLDEQGVPTGTAEKAAAHT-----ADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGE   76 (184)
T ss_pred             CCCceeEEEECCCCCCcccccHHHHHh-----cCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCC
Confidence            678999999999999999999998884     478899999999999999999999998888899999999999999999


Q ss_pred             ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEE
Q 027303           87 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY  166 (225)
Q Consensus        87 s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~W  166 (225)
                      +         +++||+||+.||||+++..+.    ..++.+.|......+...++++++|.+.....+.++++|+.+++|
T Consensus        77 t---------~~~aa~REl~EEtGl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W  143 (184)
T PRK03759         77 S---------LEDAVIRRCREELGVEITDLE----LVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQW  143 (184)
T ss_pred             C---------HHHHHHHHHHHHhCCCccccc----cccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEE
Confidence            9         899999999999999986332    123344443322222233556677777655556677889999999


Q ss_pred             eCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          167 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       167 v~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      ++++++.+++..+     +..++||++..+-++
T Consensus       144 ~~~~el~~~i~~~-----~~~~~~~l~~~~~~~  171 (184)
T PRK03759        144 VDPADLLRAVDAT-----PWAFSPWMVLQAANL  171 (184)
T ss_pred             ECHHHHHHHHHhC-----CcccChHHHHHHHHh
Confidence            9999999999986     468999999877654

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=100.00  E-value=1.5e-32  Score=222.60  Aligned_cols=171  Identities=40%  Similarity=0.639  Sum_probs=158.4

Q ss_pred             ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCCh
Q 027303            9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE   88 (225)
Q Consensus         9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~   88 (225)
                      +.|.|.++|.+|+++|..+|..||.+.+++    +|++++++|+|.+|++||+||+..|..|||.|+.+++||.-+||+ 
T Consensus         2 ~~e~vill~~~d~~~G~~~k~~~Ht~d~~~----LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es-   76 (185)
T COG1443           2 MTEDVILLNDDDVPTGTAEKLAAHTGDTPR----LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES-   76 (185)
T ss_pred             CceeEEEECCCCCccccchhhhhhccccHH----HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc-
Confidence            579999999999999999999999965543    899999999999999999999999999999999999999999999 


Q ss_pred             hhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeC
Q 027303           89 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN  168 (225)
Q Consensus        89 ~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~  168 (225)
                              .++||+|.+.+|+||.+..  .+.+.++.+|+|..++.++|.|+++|+++.+..+..+.++++||++++|++
T Consensus        77 --------~~~A~~rRl~~ELGie~~~--~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~  146 (185)
T COG1443          77 --------NEDAARRRLAYELGIEPDQ--YDKLEILPRFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVS  146 (185)
T ss_pred             --------hHHHHHHHHHHHhCCCCcc--cCccccccceEEeccCCCCcceeeeeeEEEEeecCCCCCChHHhhheeccC
Confidence                    7999999999999999885  345778899999999999999999999999988778889999999999999


Q ss_pred             HHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          169 REQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       169 ~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      ++++.++....     +..|+||+....+++
T Consensus       147 ~e~l~~~~~~~-----~~~fsPW~~~~~~~~  172 (185)
T COG1443         147 PEDLKEMVDAT-----PWAFSPWFVIQAEND  172 (185)
T ss_pred             HHHHHHhhcCC-----ceeeChHHHHHhcch
Confidence            99999998875     567999999999988

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.97  E-value=2.7e-30  Score=213.67  Aligned_cols=170  Identities=16%  Similarity=0.231  Sum_probs=139.0

Q ss_pred             ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEE--EEeCC--CeEEEeeecCCCCCCCCCeeeccccCCCC
Q 027303            9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF--LFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLY   84 (225)
Q Consensus         9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~--i~d~~--g~vLL~rRs~~k~~~pg~W~~p~gG~ve~   84 (225)
                      .+|++++||++|+++|..+|.++|+      +|++|++|+++  +.|++  +++|++||+..|..+||+|+..+|||+++
T Consensus         3 ~~E~~~v~d~~~~~~~~~~r~~~~~------~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~   76 (180)
T cd03676           3 RNELYAVYGPFGEPLFEIERAASRL------FGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGH   76 (180)
T ss_pred             cCcceeeECCCCCEeEEEEeccccc------CCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCC
Confidence            5899999999999999999998874      89999999965  55765  89999999999999999998777999999


Q ss_pred             CCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccc
Q 027303           85 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVA  162 (225)
Q Consensus        85 gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~  162 (225)
                      ||+         +.+||+||++||||+.+..+.  .+.+++.+.|.....+....++++|+|.+..+  ..+.++++|+.
T Consensus        77 gE~---------~~~aA~REl~EE~Gl~~~~~~--~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~  145 (180)
T cd03676          77 GEG---------PEETLVKECDEEAGLPEDLVR--QLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVE  145 (180)
T ss_pred             CCC---------HHHHHHHHHHHHhCCCHHHHh--hceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEe
Confidence            999         799999999999999976432  24556655555431122233677787876543  23566788999


Q ss_pred             cEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          163 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       163 ~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      ++.|++++|+.+++.++       .|+|+...+.-+||..
T Consensus       146 ~~~~~~~~el~~~l~~g-------~~~~~~~lv~~~~~~~  178 (180)
T cd03676         146 SFRLLTIDEVLRALKEG-------EFKPNCALVTLDFLIR  178 (180)
T ss_pred             EEEEECHHHHHHHHHcC-------CCCcccHhHHHHHHhh
Confidence            99999999999999885       6999999999999764

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.97  E-value=2.9e-30  Score=209.78  Aligned_cols=157  Identities=54%  Similarity=0.848  Sum_probs=129.2

Q ss_pred             EEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhh
Q 027303           13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEE   92 (225)
Q Consensus        13 ~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~   92 (225)
                      +++||++|+++|..+|+++|.     +.+++|++++++|+|++|++||+||+.++..+||+|++|+||+++.||+     
T Consensus         1 ~~~~d~~~~~~g~~~r~~~~~-----~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~-----   70 (158)
T TIGR02150         1 VILVDENDNPIGTASKAEVHL-----QETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL-----   70 (158)
T ss_pred             CEEECCCCCEeeeeeHHHhhh-----cCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH-----
Confidence            479999999999999998874     4799999999999999999999999999999999999999999999996     


Q ss_pred             hhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHH
Q 027303           93 NALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL  172 (225)
Q Consensus        93 ~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel  172 (225)
                            +||+||++|||||.+....   +..++.+.|......+  .+.++++|.+..+..+.++++|+.+++|++++++
T Consensus        71 ------eaa~REl~EE~Gl~~~~~~---l~~~~~~~~~~~~~~g--~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el  139 (158)
T TIGR02150        71 ------EAAIRRLREELGIPADDVP---LTVLPRFSYRARDAWG--EHELCPVFFARAPVPLNPNPEEVAEYRWVSLEEL  139 (158)
T ss_pred             ------HHHHHHHHHHHCCCccccc---eEEcceEEEEEecCCC--cEEEEEEEEEecCCcccCChhHeeeEEEeCHHHH
Confidence                  8999999999999987432   3344444444332211  2566677777665556677789999999999999


Q ss_pred             HHHHHhccCCCCCcccChhHHHH
Q 027303          173 KELLRKADAGEEGLKLSPWFRLV  195 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~p~~~~~  195 (225)
                      .+++..+     +..++||+..+
T Consensus       140 ~~~~~~~-----~~~~~p~~~~~  157 (158)
T TIGR02150       140 KEILKAP-----WAGFSPWFRIQ  157 (158)
T ss_pred             HHHHhcC-----ccccCHhhHHh
Confidence            9999875     57899998754

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.96  E-value=8.7e-28  Score=199.30  Aligned_cols=161  Identities=20%  Similarity=0.257  Sum_probs=128.4

Q ss_pred             CccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCC
Q 027303            8 DTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES   87 (225)
Q Consensus         8 ~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs   87 (225)
                      .+.|++++||+||+++|..+|..+|.      .++.|+++.++++|++|++||++|+..+..+||+|+.++||++++||+
T Consensus         7 ~~~e~~~~~d~~~~~~g~~~~~~~~~------~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs   80 (180)
T PRK15393          7 ASTEWVDIVNENNEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ   80 (180)
T ss_pred             CCceEEEEECCCCCEeeEEEHHHHhh------CCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC
Confidence            56899999999999999999998874      788999999999999999999999887878899998666999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEe
Q 027303           88 ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV  167 (225)
Q Consensus        88 ~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv  167 (225)
                               +++||+||++||||+.+..     +.+++.+.|....    . ....++|.+..+....++++|+.+++|+
T Consensus        81 ---------~~eAA~REL~EEtGl~~~~-----~~~~~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~  141 (180)
T PRK15393         81 ---------LLESARREAEEELGIAGVP-----FAEHGQFYFEDEN----C-RVWGALFSCVSHGPFALQEEEVSEVCWM  141 (180)
T ss_pred             ---------HHHHHHHHHHHHHCCCCcc-----ceeceeEEecCCC----c-eEEEEEEEEEeCCCCCCChHHeeEEEEC
Confidence                     7999999999999998653     3345555444221    1 2233455554455566778899999999


Q ss_pred             CHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          168 NREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       168 ~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      +++++.+++.         .|+|.....+..|+..
T Consensus       142 ~~~el~~~~~---------~~~~~~~~~l~~~l~~  167 (180)
T PRK15393        142 TPEEITARCD---------EFTPDSLKALALWLTR  167 (180)
T ss_pred             CHHHHhhhhh---------hcCccHHHHHHHHHHh
Confidence            9999999853         3777777777777443

>PLN02791 Nudix hydrolase homolog

Probab=99.96  E-value=3.6e-28  Score=236.87  Aligned_cols=160  Identities=26%  Similarity=0.347  Sum_probs=134.0

Q ss_pred             ccceEEEEcCCCCEeee-eecccccchhhcccCCcceeEEEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCC
Q 027303            9 TFDRCILVDENDRVVGH-ENKYNCHLMEKIESLNLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE   86 (225)
Q Consensus         9 ~~E~~~~~d~~~~~~g~-~~r~~~~~~~~~~~~~~~h~~v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE   86 (225)
                      ++|+|++||++|+++|. .+|.+||.      .|++|++++++|+|. +|++|||||+..|..|||.|++++|||++.||
T Consensus         2 ~eE~~DI~De~g~~~G~~~~R~evH~------~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGE   75 (770)
T PLN02791          2 MEEHLDVLTAAGEKTGVSKPRGEVHR------DGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGD   75 (770)
T ss_pred             CceEEEEECCCCCCCCccccHHhhcc------CCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCC
Confidence            57999999999999999 58888885      799999999999996 68999999999999999999999999999999


Q ss_pred             ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcC-CCCCCcceEEEEEEEEecC-----ccccCCccc
Q 027303           87 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP-SDGKWGEHELDYLLFIVRD-----VSVNPNPDE  160 (225)
Q Consensus        87 s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~-~~~~~~e~~~~~v~~~~~~-----~~~~~~~~E  160 (225)
                      +         +.+||+||++||+||.+.   .+.+.+++.+.+... ..+.+.+++++++|++...     ..+.++++|
T Consensus        76 s---------~~eAA~REL~EELGI~l~---~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eE  143 (770)
T PLN02791         76 T---------SLLSAQRELEEELGIILP---KDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESE  143 (770)
T ss_pred             C---------HHHHHHHHHHHHhCCCCC---hhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhh
Confidence            9         799999999999999864   334666776554432 3345667889988886532     145678999


Q ss_pred             cccEEEeCHHHHHHHHHhccCCCCCcccChh
Q 027303          161 VAEYKYVNREQLKELLRKADAGEEGLKLSPW  191 (225)
Q Consensus       161 v~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~  191 (225)
                      |++++|++++|+.+++...     +..|+||
T Consensus       144 V~~v~wvsl~El~~~l~~~-----~~~fvP~  169 (770)
T PLN02791        144 VSAVKYMSIEEYKSALAKE-----DPAYVPY  169 (770)
T ss_pred             hheeEEEcHHHHHHHHhcC-----CCceeec
Confidence            9999999999999999874     3566665

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.92  E-value=1.1e-24  Score=173.66  Aligned_cols=135  Identities=25%  Similarity=0.364  Sum_probs=106.1

Q ss_pred             ceeEEEEEEEeCC---CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           43 LHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        43 ~h~~v~v~i~d~~---g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      +|++|+++|+|++   +++|+++|+..+..+||.|++|+||++++||+         +++||+||++||||+.+.   ..
T Consensus         1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt---------~~~aa~REl~EEtGl~~~---~~   68 (144)
T cd04692           1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET---------PLEDGIRELEEELGLDVS---AD   68 (144)
T ss_pred             CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC---------HHHHHHHHHHHHhCCCCC---hH
Confidence            6999999999987   89999999988888999999977999999999         899999999999999875   23


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEecC---ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHH
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL  194 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~---~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~  194 (225)
                      ++.+++.+.+.....+....+.+.++|++...   ..+.++++|+.+++|++++++.+++...     |..|+||+..
T Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-----~~~~~~~~~~  141 (144)
T cd04692          69 DLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEE-----DHKYQYYDGE  141 (144)
T ss_pred             HeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcC-----CCCCCccccc
Confidence            45667766554431112222445566666542   3445677899999999999999999886     5689988754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.89  E-value=3.5e-22  Score=155.79  Aligned_cols=116  Identities=28%  Similarity=0.352  Sum_probs=93.4

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      +++.++++|++|++||++|+..+..+||+|++|+||++++||+         +.+||+||++||||+.+.     .+..+
T Consensus         1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~---------~~~aa~REl~EEtGl~~~-----~l~~~   66 (126)
T cd04697           1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES---------YLQNAQRELEEELGIDGV-----QLTPL   66 (126)
T ss_pred             CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC---------HHHHHHHHHHHHHCCCcc-----ccEEe
Confidence            4788999999999999999988878899999977999999999         799999999999999976     34556


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +.+.+....     .....++|.+.....+.++++|+.+++|++++++.+++..+
T Consensus        67 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  116 (126)
T cd04697          67 GLFYYDTDG-----NRVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGE  116 (126)
T ss_pred             eEEEecCCC-----ceEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhhcC
Confidence            666554221     12334556555555556777899999999999999998886

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=4.2e-22  Score=154.99  Aligned_cols=123  Identities=31%  Similarity=0.485  Sum_probs=94.0

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      ++|.+++++++|++||+||+..+..+||.|++|+||++++||+         + +||+||++||||+.+..   .++.++
T Consensus         1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~---------~-~aa~REl~EEtGl~~~~---~~~~~~   67 (127)
T cd04693           1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET---------S-TAAEREVKEELGLELDF---SELRPL   67 (127)
T ss_pred             CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC---------H-HHHHHHHHHHhCCCcCh---hhcEEE
Confidence            3678888998899999999988878999999998999999999         9 99999999999999762   234555


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR  193 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~  193 (225)
                      +++.+..+   +   +...++|.+.. .....++++|+.+++|++++++.+++.++       .++|++.
T Consensus        68 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-------~~~~~~~  124 (127)
T cd04693          68 FRYFFEAE---G---FDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG-------EFTPYFE  124 (127)
T ss_pred             EEEEeecC---C---eEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC-------Ccccccc
Confidence            55544322   1   22233343332 34555677899999999999999999886       4666554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.84  E-value=5e-20  Score=145.99  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=78.7

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      ++++++++++++|++||+||+..+..+||.|++| ||++++|||         +.+||+||++||||+++.......+.+
T Consensus         3 ~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~~   72 (141)
T PRK15472          3 QRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLLLTEITPWTF   72 (141)
T ss_pred             ceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCC---------HHHHHHHHHHHHHCCceeeeeeccccc
Confidence            4677777777789999999988777899999999 899999999         899999999999999864211111111


Q ss_pred             eeEEEE-EcCCCCCCcceEEEEE---EEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303          124 LGRILY-KAPSDGKWGEHELDYL---LFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       124 l~~~~y-~~~~~~~~~e~~~~~v---~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ...+.+ ..+.  +.. ..+.++   |.+.. ...+.+ .+|+.+++|++++++.++
T Consensus        73 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l  125 (141)
T PRK15472         73 RDDIRTKTYAD--GRK-EEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHY  125 (141)
T ss_pred             cccceeEEecC--CCc-eeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccc
Confidence            111111 1111  111 122222   22322 223333 478999999999999886

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.81  E-value=6.5e-19  Score=140.67  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=89.4

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      .+.+|.+++++.+|++||+||..    .||.|++| ||+++.|||         +.+||+||++||||+++...   .+.
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~---~~~   68 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSV-TGSLEEGET---------PAQTAIREVKEETGIDVLAE---QLT   68 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecC----CCCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcCcccc---cee
Confidence            45678888999889999998863    36899998 999999999         89999999999999998311   111


Q ss_pred             eee---EEEEEc------CCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303          123 PLG---RILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR  193 (225)
Q Consensus       123 ~l~---~~~y~~------~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~  193 (225)
                      .++   ...|..      ....+.. +..+++|.+.......+..+|+.+++|++++++.++           .+.|..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~-----------~~~~~~~  136 (148)
T PRK09438         69 LIDCQRSIEYEIFPHWRHRYAPGVT-RNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAAL-----------TKSWSNA  136 (148)
T ss_pred             ecccccccccccchhhhhccccccC-CceeEEEEEecCCCCccccCcccceeeCCHHHHHHH-----------hcChhHH
Confidence            111   011110      0011111 455667776643333344569999999999999997           3556777


Q ss_pred             HHHHHHHH
Q 027303          194 LVVDNFLF  201 (225)
Q Consensus       194 ~~~~~~l~  201 (225)
                      .+++.++.
T Consensus       137 ~~l~~~~~  144 (148)
T PRK09438        137 EAIEQLVI  144 (148)
T ss_pred             HHHHHHHH
Confidence            77777643

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.80  E-value=7.1e-19  Score=135.90  Aligned_cols=120  Identities=30%  Similarity=0.444  Sum_probs=90.9

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      +|++|++++++.+|++||.||+......++.|.+| ||+++.||+         +.+||+||+.||||+.+.     ...
T Consensus         1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~---------~~~aa~REl~EE~g~~~~-----~~~   65 (134)
T PF00293_consen    1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGES---------PEEAARRELKEETGLDVS-----PLE   65 (134)
T ss_dssp             EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSH---------HHHHHHHHHHHHHSEEEE-----EEE
T ss_pred             CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCc---------hhhhHHhhhhhcccceec-----ccc
Confidence            58999999999989999999997766689999998 999999999         899999999999999974     233


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEe--cC-ccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIV--RD-VSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~--~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      ..+.+.+........  ....++|.+.  .. .....+..|+.+++|++++++.++...+
T Consensus        66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  123 (134)
T PF00293_consen   66 LLGLFSYPSPSGDPE--GEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG  123 (134)
T ss_dssp             EEEEEEEEETTTESS--EEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred             cceeeeecccCCCcc--cEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence            455555555443221  2333334333  22 2344555599999999999999997764

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=5.5e-19  Score=136.64  Aligned_cols=112  Identities=18%  Similarity=0.206  Sum_probs=81.9

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCC-CCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~-k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      |.++++++.++ |++||++|+.. +..+||.|++| ||+++.||+         +++||+||++||||+++...   .+.
T Consensus         1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~---~~~   66 (122)
T cd04682           1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGET---------PLECVLRELLEEIGLTLPES---RIP   66 (122)
T ss_pred             CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCC---------HHHHHHHHHHHHhCCccccc---ccc
Confidence            45677777776 99999999876 67899999999 999999999         89999999999999997622   122


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEecC-c-cccCCccccccEEEeCHHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVRD-V-SVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~-~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      +...  |....     .....++|.+... . ....+.+|+.+++|++++++.+..
T Consensus        67 ~~~~--~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  115 (122)
T cd04682          67 WFRV--YPSAS-----PPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHE  115 (122)
T ss_pred             eeEe--cccCC-----CCceEEEEEEEEecCCCccccCchhheeecccHHHHhhcc
Confidence            2222  22211     1334455655542 2 245677899999999999997763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.9e-18  Score=134.44  Aligned_cols=128  Identities=23%  Similarity=0.222  Sum_probs=88.7

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .+|.+++++++|++||++|....  ++|.|++| ||+++.||+         +.+||.||++||||+.+..     +.++
T Consensus         2 ~av~~~i~~~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~~   64 (130)
T cd04681           2 AAVGVLILNEDGELLVVRRAREP--GKGTLDLP-GGFVDPGES---------AEEALIREIREETGLKVTE-----LSYL   64 (130)
T ss_pred             ceEEEEEEcCCCcEEEEEecCCC--CCCcEeCC-ceeecCCCC---------HHHHHHHHHHHHhCCcccc-----eeEE
Confidence            36788889988999999997543  58999998 999999999         8999999999999999763     3344


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCc-cccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      +.+....+.. +...+.+.++|.+.... ....+.+|+.+++|++++++...          ....|..+..+++||
T Consensus        65 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~----------~~~~~~~~~~~~~~~  130 (130)
T cd04681          65 FSLPNTYPYG-GMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELE----------NFAFPSIRQAVERWL  130 (130)
T ss_pred             EeecceeeeC-CceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCcc----------cCCcHHHHHHHHhhC
Confidence            4432222211 11223333455555432 34456689999999999998521          123355667777764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=3.1e-18  Score=132.77  Aligned_cols=111  Identities=16%  Similarity=0.246  Sum_probs=77.2

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++++++++.+|++||+||..    ++|.|.+| ||++++|||         +.+||+||++||||+++..+.     ++
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~-----~~   63 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTK----WRGLWGVP-GGKVEWGET---------LEEALKREFREETGLKLRDIK-----FA   63 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccC----CCCcEeCC-ceeccCCCC---------HHHHHHHHHHHHhCCcccccc-----eE
Confidence            467888899889999998752    57999998 999999999         799999999999999986432     22


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCc-cccCCccccccEEEeCHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +...+.......-..+.+.+.|.+.... .+.. .+|+.+++|+|++++.++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~  114 (125)
T cd04696          64 MVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTP-NEEIVEWEWVTPEEALDY  114 (125)
T ss_pred             EEEEEeccCCCCCccEEEEEEEEEEecCCcccC-CcccceeEEECHHHHhcC
Confidence            2222221111000124344445555432 3333 468999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.78  E-value=3.3e-18  Score=139.49  Aligned_cols=118  Identities=16%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      .+.+|.++|.+.+|++||+||+..  ..+|.|++| ||++++|||         +++||+||++||||+.+... .  ..
T Consensus        16 ~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt---------~~~Aa~REl~EEtGl~v~~~-~--~~   80 (159)
T PRK15434         16 PLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPIT-A--GQ   80 (159)
T ss_pred             ceEEEEEEEECCCCEEEEEEccCC--CCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccccc-c--ce
Confidence            456888899988899999999742  368999999 999999999         89999999999999986421 1  12


Q ss_pred             eeeEEE--EEcC-CCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303          123 PLGRIL--YKAP-SDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       123 ~l~~~~--y~~~-~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +++.+.  |... ....+..+.++.+|.+.. .+.+.++++|+.+++|++++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~  137 (159)
T PRK15434         81 FYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLAS  137 (159)
T ss_pred             EEEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhc
Confidence            232221  2211 111222244555665554 3455566779999999999999875

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.78  E-value=6.8e-18  Score=132.57  Aligned_cols=115  Identities=19%  Similarity=0.127  Sum_probs=87.0

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      |++|.++++++++++||.+|.... ..++.|++| ||+++.||+         +.+||+||++||||+.+..     +..
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~-----~~~   65 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGED---------PEEAARRELEEETGYEAGD-----LEK   65 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCC---------HHHHHHHHHHHHHCCCccc-----eEE
Confidence            578999999999999998765433 357899998 999999999         8999999999999999862     345


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecCcc---ccCCccccccEEEeCHHHHHHHHHhc
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRDVS---VNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~---~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      ++.+.+.  .  +.. +...++|.+.....   ...+++|+.+++|++++++.+++..+
T Consensus        66 ~~~~~~~--~--~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  119 (137)
T cd03424          66 LGSFYPS--P--GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG  119 (137)
T ss_pred             EeeEecC--C--ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence            5554332  1  111 33445565554322   45667889999999999999999886

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=4.4e-18  Score=131.79  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +.+++++|++.+|++||++|+..  ..+|.|++| ||++++||+         +.+||+||++||||+.+...     .+
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~eaa~RE~~EEtGl~~~~~-----~~   64 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEA---------VEDAVVREIEEETGLSIHST-----RL   64 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCC-eeeccCCCC---------HHHHHHHHHHHHHCCCcccc-----eE
Confidence            46788999998899999999743  247999999 999999999         89999999999999998642     33


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec-Cccc-cCCccccccEEEeCHHHHHHHHHh
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      ++.+.+.....   ..+.+.++|.+.. +... ..+++|+.+++|++++++.+.+..
T Consensus        65 ~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~  118 (125)
T cd04679          65 LCVVDHIIEEP---PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLTR  118 (125)
T ss_pred             EEEEeecccCC---CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhHH
Confidence            44433222211   1244555666554 2222 245578999999999999875543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=9e-18  Score=129.97  Aligned_cols=123  Identities=26%  Similarity=0.276  Sum_probs=87.2

Q ss_pred             eEEEEEEEeCC---CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           45 RAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        45 ~~v~v~i~d~~---g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      .++++++++.+   +++||++|...     +.|.+| ||++++||+         +.+||.||++||||+.+..+     
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs---------~~~aa~REl~EEtGl~~~~~-----   61 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGET---------PPEAAVREVEEETGIRAEVG-----   61 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCC---------HHHHHHHHHhhhhCCceEec-----
Confidence            35677777765   79999998643     799999 999999999         89999999999999997632     


Q ss_pred             eeeeEEEEEcCCCCCCcceEEEEEEEEec-CccccC-CccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          122 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~-~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      ..++.+.|..+..+... +..+++|.+.. ...... +++|+.+++|+|++++.+++           ..|..+.+++.+
T Consensus        62 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~-----------~~~~~~~~l~~~  129 (131)
T cd03673          62 DPLGTIRYWFSSSGKRV-HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRL-----------SYPNDRELLRAA  129 (131)
T ss_pred             ceEEEEEEeccCCCCCc-ceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHc-----------CCHhHHHHHHHh
Confidence            34666666554322222 44455565543 233333 56789999999999998863           245556666655

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1e-17  Score=134.30  Aligned_cols=125  Identities=24%  Similarity=0.401  Sum_probs=88.7

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .+++++++|.++++||+||+..+..+||.|++| |||+++||+         +++||+||++||+|+.+..... .+..+
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~---------~~~aa~RE~~EE~gi~~~~~~~-~~~~l   70 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGEN---------LLEAGLRELNEETGLTLDPIDK-SWQVL   70 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCC---------HHHHHHHHHHHHHCCCcccccc-ceeEE
Confidence            367888899999999999997776799999999 999999999         7999999999999998763211 12344


Q ss_pred             eEEEEEcCC--CCCC--cceEEEEEEEEecCc------cccCCccccccEEEeCHHHHHHHHHhcc
Q 027303          125 GRILYKAPS--DGKW--GEHELDYLLFIVRDV------SVNPNPDEVAEYKYVNREQLKELLRKAD  180 (225)
Q Consensus       125 ~~~~y~~~~--~~~~--~e~~~~~v~~~~~~~------~~~~~~~Ev~~~~Wv~~eel~~~~~~~~  180 (225)
                      +.+.+..+.  ..+.  ..+...|++......      .+.++++|+.+++|++++++.+++...+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~~  136 (143)
T cd04694          71 GLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAED  136 (143)
T ss_pred             eeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhhc
Confidence            443222221  1111  223333444333211      2446678999999999999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.77  E-value=2.9e-18  Score=138.91  Aligned_cols=112  Identities=21%  Similarity=0.149  Sum_probs=82.7

Q ss_pred             eeEEEEEEEeCC--CeEEEeeecCCCCCCCCCeeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303           44 HRAFSVFLFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  120 (225)
Q Consensus        44 h~~v~v~i~d~~--g~vLL~rRs~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~  120 (225)
                      |.+|.+++++.+  +++||+||+..+..+||.|++| ||++++| |+         +.+||+||++||||+.+..     
T Consensus         2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs---------~~eaa~REl~EEtGl~~~~-----   66 (157)
T cd03426           2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDED---------PVATALREAEEEIGLPPDS-----   66 (157)
T ss_pred             ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCC---------HHHHHHHHHHHHhCCCccc-----
Confidence            467888888765  6899999998777789999999 9999999 99         8999999999999999763     


Q ss_pred             eeeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccccEEEeCHHHHHHH
Q 027303          121 FTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +..++.+.......     ....++|++...  ..+.++++|+.+++|++++++.+.
T Consensus        67 ~~~l~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          67 VEVLGRLPPYYTRS-----GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             eEEEEECCCccccC-----CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence            33344332111111     112334444432  256677889999999999999886

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.77  E-value=9.2e-18  Score=129.41  Aligned_cols=112  Identities=18%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++.++++++ +++||.+|+...  ++|.|.+| ||+++.||+         +.+||+||++||||+.+..     +.+++
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~~   63 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLP-GGGIEPGES---------PEEALHREVLEETGLTVEI-----GRRLG   63 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCC--CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHhCcEeec-----ceeee
Confidence            456677776 999999988553  78999999 999999999         8999999999999999763     23344


Q ss_pred             EEEEEcCCCCC-CcceEEEEEEEEecCccc---cCCccccccEEEeCHHHHHHH
Q 027303          126 RILYKAPSDGK-WGEHELDYLLFIVRDVSV---NPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       126 ~~~y~~~~~~~-~~e~~~~~v~~~~~~~~~---~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .+.+....... ...+.+.++|.+......   ..+.+|..+++|++++++.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (128)
T cd04684          64 SASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIER  117 (128)
T ss_pred             EEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhcc
Confidence            43332221111 112556677766653322   345678899999999999865

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.77  E-value=1.3e-17  Score=132.97  Aligned_cols=119  Identities=21%  Similarity=0.264  Sum_probs=87.0

Q ss_pred             CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      ....-+++++++++.++++||++|...  ..+|.|++| ||++++||+         +++||+||++||||+++..    
T Consensus         9 ~~~~~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~----   72 (142)
T cd04700           9 VEVEARAAGAVILNERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEF---------PQDAAVREACEETGLRVRP----   72 (142)
T ss_pred             cceeeeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHhhCceeec----
Confidence            445668899999998889999887543  257999999 999999999         8999999999999999763    


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-cccc-CCccccccEEEeCHHHHHHHHHhc
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN-PNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~-~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                       +.+++.+.+..+.  +  .....++|.+... .... ...+|+.+++|++++++.+++..+
T Consensus        73 -~~~~~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g  129 (142)
T cd04700          73 -VKFLGTYLGRFDD--G--VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG  129 (142)
T ss_pred             -cEEEEEEEEEcCC--C--cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence             2345554433322  1  1234456666542 2222 224789999999999999998774

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=2.3e-17  Score=130.62  Aligned_cols=131  Identities=24%  Similarity=0.221  Sum_probs=86.3

Q ss_pred             eeEEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           44 HRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        44 h~~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      |.+++++++|.+ +++||+||+.     .|.|.+| ||++++||+         +++||+||++||||+.+..+....+.
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~~~   66 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDES---------LLEAALRELREETGIELLGLRPLSVL   66 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCCcccceecccc
Confidence            789999999987 8999998864     3789998 999999999         89999999999999987643211000


Q ss_pred             eeeEEEEEcCCCCC--CcceEEEEEEEEec-Ccccc-CCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303          123 PLGRILYKAPSDGK--WGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN  198 (225)
Q Consensus       123 ~l~~~~y~~~~~~~--~~e~~~~~v~~~~~-~~~~~-~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~  198 (225)
                      .-..+.........  ...+.+..+|.+.. .+... ++++|+.+++|++++++..+           .+.+..+.++++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~i~~  135 (138)
T cd03674          67 VDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASL-----------ELPEDVRRLVEK  135 (138)
T ss_pred             ccceeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhc-----------cCCHHHHHHHHH
Confidence            00011111111100  01122334555543 23333 36689999999999999764           356677777776


Q ss_pred             HH
Q 027303          199 FL  200 (225)
Q Consensus       199 ~l  200 (225)
                      .|
T Consensus       136 ~~  137 (138)
T cd03674         136 AL  137 (138)
T ss_pred             Hh
Confidence            54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=1.1e-17  Score=133.82  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=83.0

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      ..+++++|+|.+|++||+||...  .++|.|.+| ||+++.|||         +++||+||++||||+.+...   .+.+
T Consensus        12 ~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs---------~~~aa~RE~~EE~Gl~v~~~---~~~~   76 (144)
T cd03430          12 LVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNET---------LTEAFERIAKDELGLEFLIS---DAEL   76 (144)
T ss_pred             eEEEEEEEEeCCCeEEEEEccCC--CCCCcEECC-CceecCCCC---------HHHHHHHHHHHHHCCCcccc---cceE
Confidence            35788899998899999999753  368999999 999999999         89999999999999987632   1233


Q ss_pred             eeEEEEEcCC---CCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303          124 LGRILYKAPS---DGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       124 l~~~~y~~~~---~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ++.+.+....   ......+.+..+|.+.. .+.+..+++|+.+++|++++++.++
T Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          77 LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence            4443322111   11112234444555543 2334556789999999999999864

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.1e-17  Score=130.32  Aligned_cols=114  Identities=22%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             eEEEEEEEeC--CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           45 RAFSVFLFNS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        45 ~~v~v~i~d~--~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      +++++++++.  ++++||+||+..   ++|.|++| ||+++.||+         +.+||+||++||||+.+..+     .
T Consensus         2 ~~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es---------~~~aa~RE~~EE~Gl~~~~~-----~   63 (129)
T cd04664           2 RSVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGES---------PAEAARREVAEETGLDPERL-----T   63 (129)
T ss_pred             cEEEEEEEEeCCCCEEEEEEeCCC---CCCccccc-CcccCCCCC---------HHHHHHHHHHHHHCCChhhe-----E
Confidence            5788899987  899999999854   78999998 999999999         79999999999999997532     2


Q ss_pred             eeeEEE---EEcCCCCCCcceEEEEEEEEecCcc-ccCCccccccEEEeCHHHHHHHHHh
Q 027303          123 PLGRIL---YKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       123 ~l~~~~---y~~~~~~~~~e~~~~~v~~~~~~~~-~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      .+....   +......+  .+...++|.+..... ....++|+.+++|++++++.+++..
T Consensus        64 ~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  121 (129)
T cd04664          64 LLDRGASIAFVEFTDNG--RVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLW  121 (129)
T ss_pred             EEeecccccccccCCCc--eEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcC
Confidence            222221   11111111  134456666664322 2345578999999999999988543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1e-17  Score=128.54  Aligned_cols=114  Identities=22%  Similarity=0.284  Sum_probs=80.7

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      +|.+++.+ +|++||+||...+ .++|.|++| ||++++||+         +.+||+||++||||+.+.   ...+.+++
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~v~---~~~~~~~~   66 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTG-YMDGQWALP-AGHLEKGED---------AVTAAVREAREEIGVTLD---PEDLRLAH   66 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCccC---hhheEEEE
Confidence            46667766 4899999987544 458999999 999999999         799999999999999875   22345566


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEec-Cccc-cCCccccccEEEeCHHHHHHHHHh
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      .+.+....    ..+.+.++|.+.. .+.+ ..+++|+.+++|++++++.+.+..
T Consensus        67 ~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~  117 (120)
T cd04683          67 TMHRRTED----IESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTVD  117 (120)
T ss_pred             EEEecCCC----CceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhcc
Confidence            55443221    1244444555543 2322 234578899999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.76  E-value=2.5e-17  Score=128.92  Aligned_cols=126  Identities=20%  Similarity=0.222  Sum_probs=88.1

Q ss_pred             EEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeE
Q 027303           47 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR  126 (225)
Q Consensus        47 v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~  126 (225)
                      +++++. .++++||.+|...   .++.|.+| ||++++||+         +.+||.||++||||+++...     ..++.
T Consensus         3 v~~ii~-~~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~~~~   63 (134)
T cd03675           3 VAAVVE-RDGRFLLVEEETD---GGLVFNQP-AGHLEPGES---------LIEAAVRETLEETGWHVEPT-----ALLGI   63 (134)
T ss_pred             EEEEEE-ECCEEEEEEEccC---CCceEECC-CccCCCCCC---------HHHHHHHHHHHHHCcccccc-----eEEEE
Confidence            444444 4589999988643   46899999 999999999         89999999999999998632     23444


Q ss_pred             EEEEcCCCCCCcceEEEEEEEEecCc-cc-cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          127 ILYKAPSDGKWGEHELDYLLFIVRDV-SV-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       127 ~~y~~~~~~~~~e~~~~~v~~~~~~~-~~-~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      +.+..+..+.   ....++|.+.... .. ....+|+.++.|++++++.++...        ..+|....++++||.+
T Consensus        64 ~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~--------~~~~~~~~~i~~~l~~  130 (134)
T cd03675          64 YQWTAPDSDT---TYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAAR--------LRSPLVLRCIEDYLAG  130 (134)
T ss_pred             EEeecCCCCe---eEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhh--------hcCchHHHHHHHHHhc
Confidence            4444332111   2233445554322 22 234468899999999999998653        4688888999988754

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=1.2e-17  Score=130.99  Aligned_cols=124  Identities=17%  Similarity=0.160  Sum_probs=87.3

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      +++.+++.++ |++||++|+...  ++|.|.+| ||+++.||+         +.+||+||++||||+.+...     ..+
T Consensus         2 ~~~~~~i~~~-~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~~   63 (137)
T cd03427           2 LTTLCFIKDP-DKVLLLNRKKGP--GWGGWNGP-GGKVEPGET---------PEECAIRELKEETGLTIDNL-----KLV   63 (137)
T ss_pred             eEEEEEEEEC-CEEEEEEecCCC--CCCeEeCC-ceeCCCCCC---------HHHHHHHHHHHhhCeEeecc-----eEE
Confidence            4566777775 899999998654  78999999 999999999         89999999999999997632     345


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      +.+.+..+..   ..+...++|.+........+++|..+++|++++++.++           .+.+..+.+++.|+
T Consensus        64 ~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  125 (137)
T cd03427          64 GIIKFPFPGE---EERYGVFVFLATEFEGEPLKESEEGILDWFDIDDLPLL-----------PMWPGDREWLPLML  125 (137)
T ss_pred             EEEEEEcCCC---CcEEEEEEEEECCcccccCCCCccccceEEcHhhcccc-----------cCCCCcHHHHHHHh
Confidence            6665554321   12455566766543222223456678999999999765           23444555566664

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=2.4e-17  Score=131.85  Aligned_cols=117  Identities=21%  Similarity=0.321  Sum_probs=81.0

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      +|.++++++++.++++||+||+..+    |.|++| ||++++||+         +.+||.||++||||+++...     .
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~---------~~~aA~REv~EEtGl~~~~~-----~   62 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFP-QGGIDEGED---------PEQAALRELEEETGLDPDSV-----E   62 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCC----CCEECC-cCCCCCCcC---------HHHHHHHHHHHHHCCCcCce-----E
Confidence            4578899999988999999998543    899999 999999999         89999999999999997632     2


Q ss_pred             eeeE----EEEEcCCC---CCC---cceEEEEEEEEecC---ccccCC---ccccccEEEeCHHHHHHHHHh
Q 027303          123 PLGR----ILYKAPSD---GKW---GEHELDYLLFIVRD---VSVNPN---PDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       123 ~l~~----~~y~~~~~---~~~---~e~~~~~v~~~~~~---~~~~~~---~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      .++.    +.|..+..   ..+   ......++|.+...   ..+.++   ++|+.+++|++++++.+++..
T Consensus        63 ~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~  134 (147)
T cd03671          63 IIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVP  134 (147)
T ss_pred             EEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchh
Confidence            2322    33443321   011   01223344443321   233332   579999999999999997543

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.3e-17  Score=127.05  Aligned_cols=107  Identities=22%  Similarity=0.202  Sum_probs=76.8

Q ss_pred             EEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEE
Q 027303           48 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI  127 (225)
Q Consensus        48 ~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~  127 (225)
                      .+++++. +++||+||+..+..+||.|++| ||++++||+         +++||+||++||||+++..     +.++..+
T Consensus         4 ~~vi~~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~l~~~   67 (117)
T cd04691           4 VGVLFSD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGES---------QEEALLREVQEELGVDPLS-----YTYLCSL   67 (117)
T ss_pred             EEEEEEC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCC---------HHHHHHHHHHHHHCCCccc-----ceEEEEE
Confidence            3344554 8999999987665689999998 999999999         8999999999999999642     3445444


Q ss_pred             EEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303          128 LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       128 ~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      .+.  .  .  .....++|.+.. ++.+  +.+|+.+++|++++++..+...
T Consensus        68 ~~~--~--~--~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~~~  111 (117)
T cd04691          68 YHP--T--S--ELQLLHYYVVTFWQGEI--PAQEAAEVHWMTANDIVLASEA  111 (117)
T ss_pred             ecc--C--C--CeEEEEEEEEEEecCCC--CcccccccEEcCHHHcchhhhh
Confidence            322  1  1  133445555543 3333  3478999999999999876443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.9e-17  Score=127.69  Aligned_cols=112  Identities=22%  Similarity=0.339  Sum_probs=80.6

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +.++.++|+|.+|++||++|...  .++|.|.+| ||++++||+         +.+||.||++||||+++..     +..
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt---------~~~Aa~REl~EE~Gl~~~~-----~~~   64 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALP-GGHLEFGES---------FEECAAREVLEETGLHIEN-----VQF   64 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCcccc-----eEE
Confidence            35788999998899999999854  467999998 999999999         8999999999999999763     233


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecC-cccc---CCccccccEEEeCHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN---PNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~---~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ++.+...... .  ..+....+|.+... ....   .+++|+.+++|++++++.++
T Consensus        65 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          65 LTVTNDVFEE-E--GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EEEEeEEeCC-C--CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence            4433222111 1  11344445555532 2222   25678899999999999886

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=3.1e-17  Score=125.61  Aligned_cols=112  Identities=20%  Similarity=0.160  Sum_probs=79.6

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++.++++++ +++||+||+..  .++|.|.+| ||++++||+         +++||.||++||||+++...     .+++
T Consensus         2 ~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~   63 (122)
T cd04673           2 AVGAVVFRG-GRVLLVRRANP--PDAGLWSFP-GGKVELGET---------LEQAALRELLEETGLEAEVG-----RLLT   63 (122)
T ss_pred             cEEEEEEEC-CEEEEEEEcCC--CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHhhCcEeeec-----eeEE
Confidence            456777775 89999998743  368999998 999999999         89999999999999997632     3344


Q ss_pred             EEEEEcCCCCC-CcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHH
Q 027303          126 RILYKAPSDGK-WGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       126 ~~~y~~~~~~~-~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      .+.+......+ ...+.++++|.+... ... .+++|+.+++|++++++.++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~  115 (122)
T cd04673          64 VVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALS  115 (122)
T ss_pred             EEEEeeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCc
Confidence            44443322111 122445555665543 233 345788999999999998863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.2e-17  Score=126.29  Aligned_cols=105  Identities=21%  Similarity=0.210  Sum_probs=78.0

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC-CCCCCceeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE-DVPVDEFTPL  124 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~-~i~~~~l~~l  124 (225)
                      +++++++|.+|++||+||+..     +.|.+| ||++++||+         +++||+||++||||+.+. ..     ..+
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~~-----~~~   61 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTYG-----PGWYLP-GGGLERGET---------FAEAARRELLEELGIRLAVVA-----ELL   61 (120)
T ss_pred             ceEEEEECCCCeEEEEEECCC-----CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHHCCcccccc-----ceE
Confidence            577888998899999988632     389999 999999999         899999999999999986 32     345


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCc-cccCCccccccEEEeCHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +.+.+....     .....++|.+.... ....+++|+.+++|++++++.+.
T Consensus        62 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~  108 (120)
T cd04680          62 GVYYHSASG-----SWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEP  108 (120)
T ss_pred             EEEecCCCC-----CceEEEEEEecccCCCccCCcccEEEEEEECHHHCccc
Confidence            554443211     13344566665432 22456688999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3e-17  Score=127.66  Aligned_cols=114  Identities=30%  Similarity=0.407  Sum_probs=80.1

Q ss_pred             cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      ..+.++++++++.++++||++|+..     |.|++| ||++++||+         +.+||+||++||||+.+...     
T Consensus         5 ~~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt---------~~~aa~REl~EE~Gi~~~~~-----   64 (132)
T cd04677           5 LILVGAGVILLNEQGEVLLQKRSDT-----GDWGLP-GGAMELGES---------LEETARRELKEETGLEVEEL-----   64 (132)
T ss_pred             ccccceEEEEEeCCCCEEEEEecCC-----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCeeeee-----
Confidence            4667888889998899999998743     789998 999999999         89999999999999998643     


Q ss_pred             eeeeEE----EEEcCCCCCCcceEEEEE-EEEec-CccccCCccccccEEEeCHHHHHHHHH
Q 027303          122 TPLGRI----LYKAPSDGKWGEHELDYL-LFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR  177 (225)
Q Consensus       122 ~~l~~~----~y~~~~~~~~~e~~~~~v-~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~  177 (225)
                      ..++.+    .|..+..+.  .+..+.+ +++.. ...+..+.+|+.+++|++++++.+++.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~  124 (132)
T cd04677          65 ELLGVYSGKEFYVKPNGDD--EQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN  124 (132)
T ss_pred             EEEEEecCCceeecCCCCc--EEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence            223222    122122211  1233333 33332 233345678899999999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=1.1e-16  Score=124.20  Aligned_cols=109  Identities=23%  Similarity=0.283  Sum_probs=75.2

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +.+++++++|.++++||.||...   ++|.|.+| ||+++.||+         +.+||+||++||||+.+...     ..
T Consensus         2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt---------~~~aa~RE~~EE~Gl~~~~~-----~~   63 (127)
T cd04670           2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLP-GGLVDPGED---------IFDGAVREVLEETGIDTEFV-----SV   63 (127)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCC---CCCcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCCccee-----EE
Confidence            35678888998899999887543   68999999 999999999         89999999999999987521     22


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec---CccccCCccccccEEEeCHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ++.. +..+..  +.  ....+|.+..   ...+.++++|+.+++|++++++.+.
T Consensus        64 ~~~~-~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  113 (127)
T cd04670          64 VGFR-HAHPGA--FG--KSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQ  113 (127)
T ss_pred             EEEE-ecCCCC--cC--ceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcc
Confidence            2222 111111  11  1112222222   2334556788999999999999654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.73  E-value=4.5e-17  Score=128.04  Aligned_cols=105  Identities=18%  Similarity=0.282  Sum_probs=79.1

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      +|.+++++.++++||+||+..   .+|.|++| ||+++.||+         +++||+||++||||+.+..     +.+++
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt---------~~~aA~REl~EEtGl~~~~-----~~~l~   63 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRF---PPGMYSLL-AGFVEPGES---------LEEAVRREVKEEVGIRVKN-----IRYVG   63 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCC---CCCcCcCC-cccccCCCC---------HHHHHhhhhhhccCceeee-----eEEEe
Confidence            567778887789999988642   37899998 999999999         8999999999999999763     33444


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .+.+..+       +.+.++|.+... .....+++|+.+++|++++++.++
T Consensus        64 ~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          64 SQPWPFP-------SSLMLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             ecCCCCC-------ceEEEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence            4322211       233445555543 445567789999999999999998

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=7.5e-17  Score=124.45  Aligned_cols=115  Identities=18%  Similarity=0.187  Sum_probs=79.3

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++.+++++++|++||+||+..+..++|.|++| ||+++.||+         +.+||+||++||||+.+...     ..++
T Consensus         3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~~-----~~~~   67 (129)
T cd04699           3 AVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGET---------FEEALKREVYEETGLTVTPF-----LRYP   67 (129)
T ss_pred             eEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCC---------HHHHHHHHHHHhhCcEEEee-----eeee
Confidence            56777778779999999987765679999998 999999999         79999999999999987632     1122


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHh
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      ...+....  . ..+...++|.+........+++|..+++|++++++..+...
T Consensus        68 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~  117 (129)
T cd04699          68 STVTHEDS--G-VYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEELAILKAD  117 (129)
T ss_pred             EEEEEcCC--C-EEEEEEEEEEeeecCCcccCChhheEEEEecHHHhhhhhcc
Confidence            22222111  1 11223344444332222334568899999999999766544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02839 nudix hydrolase

Probab=99.72  E-value=1.7e-16  Score=143.35  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=133.7

Q ss_pred             ccceEEEEcCC-CCEeeeeecccccchhhcccCCcceeEEEEEEE---eCCCeEEEeeecCCCCCCCCCeeeccccCCCC
Q 027303            9 TFDRCILVDEN-DRVVGHENKYNCHLMEKIESLNLLHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY   84 (225)
Q Consensus         9 ~~E~~~~~d~~-~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~---d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~   84 (225)
                      ++|+.++++.. +.+.....|..+-.      .|....+|++--+   +.+++++++||+.+|..+||+||..+||++..
T Consensus       173 RnE~y~V~~~~~~~~l~~iERaA~~l------fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~a  246 (372)
T PLN02839        173 RNELYPVKPSFNAPVFFSLERAAAPY------FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPH  246 (372)
T ss_pred             ccCccccccCCCCcceEEEeeccccc------cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccC
Confidence            78999999864 57889999986543      5666677766544   23357999999999999999999999999999


Q ss_pred             CCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccc
Q 027303           85 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVA  162 (225)
Q Consensus        85 gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~  162 (225)
                      ||+         +.++++||..||.||.....  ..+...|++.|......+.. .+..|+|-...  +..+.++++|++
T Consensus       247 Ges---------p~etliREa~EEAgLp~~l~--~~~~~~G~VsY~~~~~~g~~-~evly~YDLeLP~df~P~~qDGEVe  314 (372)
T PLN02839        247 GIS---------CGENLVKECEEEAGISKAIA--DRAIAVGAVSYMDIDQYCFK-RDVLFCYDLELPQDFVPKNQDGEVE  314 (372)
T ss_pred             CCC---------HHHHHHHHHHHHcCCCHHHH--hcceEeEEEEEEEEcCCccc-cCEEEEeeeecCCccccCCCcccee
Confidence            999         89999999999999986532  25677888888754333322 34445554443  344577899999


Q ss_pred             cEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHH
Q 027303          163 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW  203 (225)
Q Consensus       163 ~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~  203 (225)
                      ++.+++++|+.+.+..+      ..|+|....++-+||.+.
T Consensus       315 ~F~Lm~v~EV~~~l~~~------~~fKpn~aLViiDFLiRh  349 (372)
T PLN02839        315 SFKLIPVAQVANVIRKT------SFFKANCSLVIIDFLFRH  349 (372)
T ss_pred             EEEEecHHHHHHHHHcC------CCCCcccHHHHHHHHHHc
Confidence            99999999999999874      359999999999998654

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.71  E-value=3.4e-16  Score=126.91  Aligned_cols=116  Identities=19%  Similarity=0.280  Sum_probs=81.3

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      +|.++++++++.+|++||+||+.    .|+.|++| ||++++||+         +.+||.||++||||+.+..+     .
T Consensus         7 ~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P-~G~~~~gE~---------~~~aa~REl~EEtG~~~~~~-----~   67 (156)
T PRK00714          7 YRPNVGIILLNRQGQVFWGRRIG----QGHSWQFP-QGGIDPGET---------PEQAMYRELYEEVGLRPEDV-----E   67 (156)
T ss_pred             CCCeEEEEEEecCCEEEEEEEcC----CCCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCccce-----E
Confidence            67799999999999999999973    26899999 999999999         89999999999999997532     2


Q ss_pred             eeeE----EEEEcCC------CCCCcceEEEEEEEEec---CccccC---CccccccEEEeCHHHHHHHHHh
Q 027303          123 PLGR----ILYKAPS------DGKWGEHELDYLLFIVR---DVSVNP---NPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       123 ~l~~----~~y~~~~------~~~~~e~~~~~v~~~~~---~~~~~~---~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      .++.    +.|..+.      ...+. ....++|.+..   ...+.+   +++|+.+++|++++++.+++..
T Consensus        68 ~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~  138 (156)
T PRK00714         68 ILAETRDWLRYDLPKRLVRRSKGVYR-GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVP  138 (156)
T ss_pred             EEEEcCCeEEecCcHHHhhccCCccc-CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchh
Confidence            2332    3333321      11111 11234454443   122332   3468999999999999987543

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.4e-16  Score=122.37  Aligned_cols=109  Identities=19%  Similarity=0.217  Sum_probs=75.2

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++++++++.+|++||+||+..     |.|++| ||+++.||+         +.+||+||++||||+++...     ..+
T Consensus         3 ~~v~~ii~~~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~---------~~~aa~REl~EE~Gl~~~~~-----~~~   62 (129)
T cd04676           3 PGVTAVVRDDEGRVLLIRRSDN-----GLWALP-GGAVEPGES---------PADTAVREVREETGLDVEVT-----GLV   62 (129)
T ss_pred             ceEEEEEECCCCeEEEEEecCC-----CcEECC-eeccCCCCC---------HHHHHHHHHHHHhCceeEee-----EEE
Confidence            4677788888899999999743     899998 999999999         79999999999999987522     121


Q ss_pred             eEE-----EEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303          125 GRI-----LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~-----~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +.+     .+..+. +. ..+.+.++|.+.. ......+.+|..+++|++++++.++
T Consensus        63 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~  117 (129)
T cd04676          63 GIYTGPVHVVTYPN-GD-VRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPL  117 (129)
T ss_pred             EEeecccceeecCC-CC-cEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccc
Confidence            111     111111 11 1134444555443 2333345678899999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.70  E-value=2.8e-16  Score=125.82  Aligned_cols=115  Identities=21%  Similarity=0.240  Sum_probs=78.1

Q ss_pred             cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      ..+.++.+++++. |++||+||+...  ..|.|.+| ||+++.||+         +.+||+||++||||+++...     
T Consensus         7 ~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs---------~~~aa~REv~EEtGl~v~~~-----   68 (144)
T PLN02325          7 IPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALP-GGHLEFGES---------FEECAAREVKEETGLEIEKI-----   68 (144)
T ss_pred             CCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcce-----
Confidence            3456777777774 799999997532  34899999 999999999         89999999999999998632     


Q ss_pred             eeeeEEEEEcCCCCCCcceEEEEEEEEec-Cc---cccCCccccccEEEeCHHHHHHH
Q 027303          122 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DV---SVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~---~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ..++.+.+........ .|.+..+|.+.. +.   ....+++|+.+++|+++++|.+.
T Consensus        69 ~~l~~~~~~~~~~~~~-~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~  125 (144)
T PLN02325         69 ELLTVTNNVFLEEPKP-SHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP  125 (144)
T ss_pred             EEEEEecceeecCCCC-cEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence            2343332221111111 244445555543 22   22345567789999999999864

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=3.2e-16  Score=121.46  Aligned_cols=109  Identities=23%  Similarity=0.328  Sum_probs=76.1

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      |++.++++.+  +++||+||+.     .+.|.+| ||+++.||+         +.+||.||++||||+++...     .+
T Consensus         2 ~~v~~vi~~~--~~vLl~~~~~-----~~~w~lP-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~   59 (126)
T cd04688           2 VRAAAIIIHN--GKLLVQKNPD-----ETFYRPP-GGGIEFGES---------SEEALIREFKEELGLKIEIT-----RL   59 (126)
T ss_pred             eEEEEEEEEC--CEEEEEEeCC-----CCeEECC-CccccCCCC---------HHHHHHHHHHHHhCCceecc-----ee
Confidence            5666666644  5999998864     4789999 999999999         89999999999999987632     23


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecCc-ccc-------CCccccccEEEeCHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRDV-SVN-------PNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~-------~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ++.+.+.....+. ..+..+++|.+.... ...       .+++|+.+++|++++++..+
T Consensus        60 ~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          60 LGVVENIFTYNGK-PGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             eEEEEEeeccCCc-ccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence            4433222222221 225566777666532 222       14578999999999999854

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=5.1e-16  Score=120.18  Aligned_cols=108  Identities=20%  Similarity=0.242  Sum_probs=76.0

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      |..|++++++ +|++||++|..     .+.|.+| ||++++||+         +.+||+||++||||+++..     ..+
T Consensus         1 ~~~~~~vi~~-~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~   59 (125)
T cd04689           1 HLRARAIVRA-GNKVLLARVIG-----QPHYFLP-GGHVEPGET---------AENALRRELQEELGVAVSD-----GRF   59 (125)
T ss_pred             CeEEEEEEEe-CCEEEEEEecC-----CCCEECC-CCcCCCCCC---------HHHHHHHHHHHHhCceeec-----cEE
Confidence            4566777775 58999998853     2689999 999999999         7999999999999999763     344


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecCc----cccCCccccccEEEeCHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRDV----SVNPNPDEVAEYKYVNREQLK  173 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~----~~~~~~~Ev~~~~Wv~~eel~  173 (225)
                      ++.+.+.....+.+ .+.+.++|.+....    .....++|+.+++|++++++.
T Consensus        60 l~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          60 LGAIENQWHEKGVR-THEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             EEEEeeeeccCCce-EEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence            55544333322222 25566667665421    122345678999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=3.7e-16  Score=119.38  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=78.1

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      .+++++++.+|++||.||..     .+.|.+| ||++++||+         +++||+||++||||+.+..   ..+.+++
T Consensus         2 ~~~~~v~~~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es---------~~~aa~REl~EEtGl~~~~---~~~~~~~   63 (118)
T cd04690           2 IAAALILVRDGRVLLVRKRG-----TDVFYLP-GGKIEAGET---------PLQALIRELSEELGLDLDP---DSLEYLG   63 (118)
T ss_pred             eEEEEEEecCCeEEEEEECC-----CCcEECC-CCccCCCCC---------HHHHHHHHHHHHHCCccCh---hheEEEE
Confidence            35666777789999988763     3789999 999999999         8999999999999998762   1255666


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .+.+.......  .+...++|.+.....+. ..+|+.+++|++++++.+.
T Consensus        64 ~~~~~~~~~~~--~~~~~~~f~~~~~~~~~-~~~e~~~~~W~~~~e~~~~  110 (118)
T cd04690          64 TFRAPAANEPG--VDVRATVYVAELTGEPV-PAAEIEEIRWVDYDDPADD  110 (118)
T ss_pred             EEecccccCCC--cEEEEEEEEEcccCCcC-CCchhhccEEecHHHcccc
Confidence            66443222111  24455667666544333 3478999999999998543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.69  E-value=5.6e-16  Score=119.37  Aligned_cols=120  Identities=17%  Similarity=0.250  Sum_probs=81.5

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      .+.+++.+++|++||+||+.. ..++|.|++| ||++++||+         +.+||.||++||||+.+..     ...++
T Consensus         6 ~~~~ii~~~~~~vll~rR~~~-~~~~g~w~~P-gG~~~~gE~---------~~~a~~Re~~EE~gl~~~~-----~~~~~   69 (129)
T PRK10776          6 IAVGIIRNPNNEIFITRRAAD-AHMAGKWEFP-GGKIEAGET---------PEQALIRELQEEVGITVQH-----ATLFE   69 (129)
T ss_pred             EEEEEEECCCCEEEEEEecCC-CCCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCceec-----ceEEE
Confidence            445556777789999999865 3589999999 999999999         7999999999999998652     22344


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      .+.+..+.     .+...++|.+.. +..  +.+.|..+++|++++++.+.           .|++..+.+++.+
T Consensus        70 ~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~~l~~~-----------~~p~~~~~~~~~~  126 (129)
T PRK10776         70 KLEYEFPD-----RHITLWFWLVESWEGE--PWGKEGQPGRWVSQVALNAD-----------EFPPANEPIIAKL  126 (129)
T ss_pred             EEEeeCCC-----cEEEEEEEEEEEECCc--cCCccCCccEEecHHHCccC-----------CCCcccHHHHHHH
Confidence            44443321     011223344432 222  23457788999999999764           3666666666654

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.69  E-value=6.6e-16  Score=117.48  Aligned_cols=108  Identities=21%  Similarity=0.250  Sum_probs=77.9

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++.++++++++++||++|+..+ .++|+|++| ||+++.+|+         +.+||.||++||||+.+..     ...++
T Consensus         3 ~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~---------~~~~a~Re~~EE~g~~~~~-----~~~~~   66 (124)
T cd03425           3 VVAAIIIDDDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGET---------PEQALVRELREELGIEVEV-----GELLA   66 (124)
T ss_pred             EEEEEEECCCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCC---------HHHHHHHHHHHhhCcEEec-----cceEE
Confidence            4556667777999999998665 689999998 999999999         7999999999999998753     23455


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .+.+..+.     .+...++|.+..... ...+.|..++.|++++++.++
T Consensus        67 ~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~  110 (124)
T cd03425          67 TVEHDYPD-----KRVTLHVFLVELWSG-EPQLLEHQELRWVPPEELDDL  110 (124)
T ss_pred             EEEeeCCC-----CeEEEEEEEEeeeCC-CcccccCceEEEeeHHHcccC
Confidence            55544331     133345555543211 122457789999999999764

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.68  E-value=1.4e-15  Score=119.01  Aligned_cols=121  Identities=17%  Similarity=0.123  Sum_probs=80.8

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++++++ +.+|++||+||+... .++|.|++| ||+++.||+         +.+||+||++||||+.+...     .+++
T Consensus         6 ~~~~ii-~~~~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~---------~~~a~~RE~~EE~Gl~~~~~-----~~~~   68 (135)
T PRK10546          6 VVAAII-ERDGKILLAQRPAHS-DQAGLWEFA-GGKVEPGES---------QPQALIRELREELGIEATVG-----EYVA   68 (135)
T ss_pred             EEEEEE-ecCCEEEEEEccCCC-CCCCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCccccc-----eeEE
Confidence            334444 456899999997544 579999999 999999999         78999999999999997632     2344


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      .+.+....     .....++|.+.. .+.  +...|..+++|++++++.++           .+++..+.+++.|+.
T Consensus        69 ~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~  127 (135)
T PRK10546         69 SHQREVSG-----RRIHLHAWHVPDFHGE--LQAHEHQALVWCTPEEALRY-----------PLAPADIPLLEAFMA  127 (135)
T ss_pred             EEEEecCC-----cEEEEEEEEEEEecCc--ccccccceeEEcCHHHcccC-----------CCCcCcHHHHHHHHH
Confidence            44333211     011233443332 222  22346788999999999875           456666667776643

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=9.5e-16  Score=119.26  Aligned_cols=114  Identities=11%  Similarity=0.120  Sum_probs=74.6

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++++++++ ++++|++||...   .++.|.+| ||+++.||+         +++||+||+.||||+.+...   ++..+
T Consensus         2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~v~~~---~~~~~   64 (128)
T cd04687           2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILP-GGGQEPGET---------LEDAAHRECKEEIGIDVEIG---PLLFV   64 (128)
T ss_pred             cEEEEEEEE-CCEEEEEEEEcC---CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCccccC---cEEEE
Confidence            356666666 589999988643   24789998 999999999         89999999999999998732   23333


Q ss_pred             eEEEEEcCC-CCCCcceEEEEEEEEecCc-c---cc-CCccccccEEEeCHHHHHHH
Q 027303          125 GRILYKAPS-DGKWGEHELDYLLFIVRDV-S---VN-PNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~~y~~~~-~~~~~e~~~~~v~~~~~~~-~---~~-~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ..+.+.... ......|.++++|.+.... .   .. ..+.+..+++|++++++.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~  121 (128)
T cd04687          65 REYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI  121 (128)
T ss_pred             EEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence            222211100 0111225566777666432 1   11 12234568999999999776

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=1.4e-15  Score=119.19  Aligned_cols=107  Identities=20%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             EeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEc
Q 027303           52 FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA  131 (225)
Q Consensus        52 ~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~  131 (225)
                      .++++++||.+|+..   ++|.|.+| ||+++.|||         +.+||+||++||||+++..+..  ..++..+ |..
T Consensus        10 ~~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~~--~~~~~~~-~~~   73 (131)
T cd04695          10 LDKETKVLLLKRVKT---LGGFWCHV-AGGVEAGET---------AWQAALRELKEETGISLPELYN--ADYLEQF-YEA   73 (131)
T ss_pred             cCCCCEEEEEEecCC---CCCcEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcccccc--ccceeeE-eec
Confidence            356679999999854   68999998 999999999         7999999999999999864321  1112222 322


Q ss_pred             CCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303          132 PSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       132 ~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      +  ..  .....++|.+.. .......++|+.+++|++++++.++...
T Consensus        74 ~--~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  117 (131)
T cd04695          74 N--DN--RILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPF  117 (131)
T ss_pred             C--Cc--eEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCC
Confidence            1  11  122334454443 2222223478999999999999988543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.67  E-value=1.3e-15  Score=118.36  Aligned_cols=111  Identities=23%  Similarity=0.201  Sum_probs=75.1

Q ss_pred             eEEEEEEEeCCC---eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           45 RAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        45 ~~v~v~i~d~~g---~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      +++++++++.++   ++||.||+.      +.|++| ||++++|||         +.+||+||++||||+.+....    
T Consensus         3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~----   62 (130)
T cd03428           3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGED---------DLEAALRETEEETGITAEQLF----   62 (130)
T ss_pred             eEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCC---------HHHHHHHHHHHHHCCChhhhh----
Confidence            456667666443   689988874      889999 999999999         899999999999999987432    


Q ss_pred             eeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccccEEEeCHHHHHHHHHh
Q 027303          122 TPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                       .++.+.+....... ..+..+++|.+...  ..+.++ +|+.++.|++++++.+++..
T Consensus        63 -~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~~  118 (130)
T cd03428          63 -IVLGFKETLNYQVR-GKLKTVTYFLAELRPDVEVKLS-EEHQDYRWLPYEEALKLLTY  118 (130)
T ss_pred             -hhccceeEEEcccc-CcceEEEEEEEEeCCCCccccc-cceeeEEeecHHHHHHHcCc
Confidence             22112111111100 11344455655542  334444 78999999999999987543

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.67  E-value=1.8e-15  Score=121.36  Aligned_cols=108  Identities=14%  Similarity=0.161  Sum_probs=73.4

Q ss_pred             EEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           46 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        46 ~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      ++++++++.+ +++||+||..     ++.|++| ||+++.|||         +.+||+||++||||+.+...     ...
T Consensus         3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs---------~~~AA~REl~EETGl~v~~~-----~~~   62 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDED---------DHDCAIREVYEETGFDISKY-----IDK   62 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcC---------HHHHHHHHHHHhhCccceec-----ccc
Confidence            5677788765 6999988752     3589999 999999999         79999999999999997632     111


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec-Cc--cccC-CccccccEEEeCHHHHHHHHHhc
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR-DV--SVNP-NPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~--~~~~-~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      .  .|.....   ... .+++|++.. ..  ...+ +++|+.+++|++++++.++....
T Consensus        63 ~--~~~~~~~---~~~-~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~  115 (145)
T cd03672          63 D--DYIELII---RGQ-NVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK  115 (145)
T ss_pred             c--eeeeccc---CCc-EEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence            1  1221111   112 223344332 22  2222 35789999999999999998763

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.3e-15  Score=118.63  Aligned_cols=105  Identities=15%  Similarity=0.171  Sum_probs=75.1

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++++++++.+|++||++|...  .+++.|.+| ||+++.||+         +.+||+||++||||+++...     ..++
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~-----~~~~   64 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGET---------IEEAVKREVKEETGLDCEPT-----TLLS   64 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCC--CCCCeEECc-eeecCCCCC---------HHHHHHHHHHHHHCCeeecc-----eEEE
Confidence            567888888899999998743  358999999 999999999         89999999999999998632     2232


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEec-Ccccc---CCccccccEEEeCHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVR-DVSVN---PNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~---~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ..  ..  .    .+.+.++|.+.. .+.+.   .++.|+.+++|++++++...
T Consensus        65 ~~--~~--~----~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~  110 (123)
T cd04671          65 VE--EQ--G----GSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLP  110 (123)
T ss_pred             EE--cc--C----CeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCc
Confidence            21  11  1    134455565553 22222   23457789999999999443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=3.5e-15  Score=116.29  Aligned_cols=113  Identities=19%  Similarity=0.172  Sum_probs=76.6

Q ss_pred             EEEEEEEeCC---CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           46 AFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        46 ~v~v~i~d~~---g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      ++++++++.+   +++||.+|...     +.|.+| ||+++.||+         +.+||+||++||||++....    +.
T Consensus         2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~---------~~~aa~RE~~EEtG~~~~~~----~~   62 (122)
T cd04666           2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDES---------PAEAAAREAWEEAGVRGKIG----KR   62 (122)
T ss_pred             EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCC---------HHHHHHHHHHHHhCCccccc----ce
Confidence            3455555533   57998887632     889999 999999999         89999999999999986522    24


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEecCcc-ccCCccccccEEEeCHHHHHHHHHh
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~-~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      +++.+.+..+..+. ..+..+++|.+..... ...+..+..+++|++++++.+++..
T Consensus        63 ~l~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~  118 (122)
T cd04666          63 PLGRFEYRKRSKNR-PPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEE  118 (122)
T ss_pred             EEEEEEeeecCCCC-CceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCC
Confidence            67777665543211 1133344554443222 2223456789999999999988654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2.2e-15  Score=114.70  Aligned_cols=93  Identities=19%  Similarity=0.243  Sum_probs=68.4

Q ss_pred             CCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCC
Q 027303           54 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS  133 (225)
Q Consensus        54 ~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~  133 (225)
                      .++++||++|..      |.|.+| ||++++||+         +.+||.||++||||+.+..     +.+++.+  ..  
T Consensus         9 ~~~~vLlv~r~~------~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~~~~~--~~--   63 (112)
T cd04667           9 RGGRVLLVRKSG------SRWALP-GGKIEPGET---------PLQAARRELQEETGLQGLD-----LLYLFHV--DG--   63 (112)
T ss_pred             cCCEEEEEEcCC------CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHhCCcccc-----eEEEEEE--eC--
Confidence            458999999862      889999 999999999         8999999999999998652     3444433  21  


Q ss_pred             CCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHH
Q 027303          134 DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       134 ~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      .     +...++|.+... .....+++|+.+++|++++++.++.
T Consensus        64 ~-----~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~  102 (112)
T cd04667          64 G-----STRHHVFVASVPPSAQPKPSNEIADCRWLSLDALGDLN  102 (112)
T ss_pred             C-----CEEEEEEEEEcCCcCCCCCchheeEEEEecHHHhhhcc
Confidence            1     234455655543 2223346789999999999998864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2e-15  Score=116.82  Aligned_cols=111  Identities=12%  Similarity=0.078  Sum_probs=74.8

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      ..|.++|+++ +++||.+|..     .|.|.+| ||++++||+         +.+||+||++||||+.+..   .+  .+
T Consensus         3 ~~v~~~i~~~-~~vLL~~~~~-----~~~w~~P-GG~ve~gEs---------~~~aa~REl~EEtG~~~~~---~~--~~   61 (123)
T cd04672           3 VDVRAAIFKD-GKILLVREKS-----DGLWSLP-GGWADVGLS---------PAENVVKEVKEETGLDVKV---RK--LA   61 (123)
T ss_pred             ceEEEEEEEC-CEEEEEEEcC-----CCcEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCeeeE---eE--EE
Confidence            3567777876 8999988863     4899999 999999999         8999999999999998742   11  22


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR  177 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~  177 (225)
                      +.+.+..........+.+..+|.+.. ...+... +|..+++|++++++.++..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~el~~l~~  114 (123)
T cd04672          62 AVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPN-IETSEVGFFALDDLPPLSE  114 (123)
T ss_pred             EEeccccccCCCCceEEEEEEEEEEecCCcccCC-CceeeeEEECHHHCccccc
Confidence            22211111111111233444555554 3334444 7889999999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=3.5e-15  Score=112.35  Aligned_cols=109  Identities=22%  Similarity=0.339  Sum_probs=79.8

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++++++++.++++||++|+..   ++|.|.+| ||+++.+|+         +.+||+||++||+|+.+..     ....+
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~---------~~~~a~RE~~EE~Gl~~~~-----~~~~~   63 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS---PGGLWELP-GGGVEPGET---------LEEAAIREVREETGLDVDV-----LRLLG   63 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC---CCCeEeCC-cccccCCCC---------HHHHHHHHHHHhhCcccee-----eeEEE
Confidence            567788887789999999865   78999998 999999999         7999999999999998751     23344


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEecCcc-c-cCCccccccEEEeCHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVRDVS-V-NPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~-~-~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .+.+..+..   ......++|.+..... . ..++.|+.+.+|++++++.++
T Consensus        64 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~  112 (123)
T cd02883          64 VYEVESPDE---GEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPAL  112 (123)
T ss_pred             EEEeeccCC---CceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccc
Confidence            444444321   1244455665554322 1 245678889999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.64  E-value=2.7e-14  Score=118.79  Aligned_cols=114  Identities=20%  Similarity=0.103  Sum_probs=83.5

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .+|.++.++.++++||+|+... ...++.|++| ||++++||+         +++||+||++||||+.+.     .+.++
T Consensus        48 ~~v~v~~~~~~~~vlLvrq~r~-~~~~~~~elP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~-----~l~~l  111 (185)
T PRK11762         48 GAVMIVPILDDDTLLLIREYAA-GTERYELGFP-KGLIDPGET---------PLEAANRELKEEVGFGAR-----QLTFL  111 (185)
T ss_pred             CEEEEEEEeCCCEEEEEEeecC-CCCCcEEEcc-ceeCCCCCC---------HHHHHHHHHHHHHCCCCc-----ceEEE
Confidence            4567776777788999877533 2457889999 999999999         899999999999999976     35667


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +.+.. .+   +.. ...+++|++...  .....++.|..++.|+|++++.+++.++
T Consensus       112 ~~~~~-~~---~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g  163 (185)
T PRK11762        112 KELSL-AP---SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARP  163 (185)
T ss_pred             EEEec-CC---Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence            66532 22   222 334566666542  2233456777899999999999999986

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=1.9e-15  Score=117.06  Aligned_cols=102  Identities=18%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             EEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeE
Q 027303           47 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR  126 (225)
Q Consensus        47 v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~  126 (225)
                      +++++++.+|++||+||...   ..+.|.+| ||+++.||+         +.+||+||++||||+++...     ..++.
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lP-GG~ve~gEs---------~~~a~~REl~EEtGl~~~~~-----~~~~~   64 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKP---GKTYYVFP-GGGIEEGET---------PEEAAKREALEELGLDVRVE-----EIFLI   64 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecC---CCCcEECC-ceeccCCCC---------HHHHHHHHHHHhhCeeEeee-----eEEEE
Confidence            35566676689999998643   25889999 999999999         89999999999999998521     12333


Q ss_pred             EEEEcCCCCCCcceEEEEEEEEec-CccccC---------CccccccEEEeCHHHHHHH
Q 027303          127 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNP---------NPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       127 ~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~---------~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +.+  +       +...++|.+.. .+.+..         ++++..+++|++++++.++
T Consensus        65 ~~~--~-------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          65 VNQ--N-------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI  114 (121)
T ss_pred             Eee--C-------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence            322  1       11234455443 222111         1334567999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=7e-15  Score=116.33  Aligned_cols=116  Identities=17%  Similarity=0.171  Sum_probs=77.1

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      +++.++++|.+|++|+++|...+..+++.|.+| ||+++.||+         +.+||.||++||||+.+..+  ..+...
T Consensus         1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~a~~Re~~EE~G~~~~~~--~~~~~~   68 (133)
T cd04685           1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGES---------PEQAARRELREETGITVADL--GPPVWR   68 (133)
T ss_pred             CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCC---------HHHHHHHHHHHHHCCccccc--cceEEE
Confidence            478899999999999998876543467899998 999999999         89999999999999998322  122222


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCc-c---cc---CCccccccEEEeCHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDV-S---VN---PNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~---~~---~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ....|..... .+  +...++|.+.... .   ..   .+..++..++|+++++|.+.
T Consensus        69 ~~~~f~~~~~-~~--~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          69 RDAAFTFLGV-DG--RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             EEEEEEecCc-cc--eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            1211222211 11  2334555554321 1   11   11234568999999999875

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.63  E-value=3.4e-15  Score=130.39  Aligned_cols=106  Identities=19%  Similarity=0.235  Sum_probs=77.7

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      ..+|.+++.+ ++++||.||...   .+|.|.+| ||++++|||         +++||+||++||||+++..     +.+
T Consensus       132 ~paViv~V~~-~~~iLL~rr~~~---~~g~wslP-gG~vE~GEs---------~eeAa~REv~EEtGl~v~~-----~~~  192 (256)
T PRK00241        132 APCIIVAVRR-GDEILLARHPRH---RNGVYTVL-AGFVEVGET---------LEQCVAREVMEESGIKVKN-----LRY  192 (256)
T ss_pred             CCEEEEEEEe-CCEEEEEEccCC---CCCcEeCc-ccCCCCCCC---------HHHHhhhhhhhccCceeee-----eEE
Confidence            3455555554 589999988643   27899998 999999999         8999999999999999763     445


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ++...+..+       +...+.|.+.. .+.+.++++|+.+++|++++++..+
T Consensus       193 ~~s~~~~~p-------~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del~~l  238 (256)
T PRK00241        193 VGSQPWPFP-------HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDELPLL  238 (256)
T ss_pred             EEeEeecCC-------CeEEEEEEEEecCCcccCCcccEEEEEEECHHHCccc
Confidence            655544332       23445565554 3456677789999999999998654

>TIGR00586 mutt mutator mutT protein

Probab=99.62  E-value=1.5e-14  Score=111.77  Aligned_cols=109  Identities=17%  Similarity=0.071  Sum_probs=73.6

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++.+++++++|++||+||... ..++|.|++| ||+++.||+         +.+|++||+.||||+.+...     ..+
T Consensus         5 ~~~~~ii~~~~~~vLl~~R~~~-~~~~g~w~~P-gg~ve~ge~---------~~~~~~RE~~EE~g~~~~~~-----~~~   68 (128)
T TIGR00586         5 QIAVGIIRNENGEIIITRRADG-HMFAKLLEFP-GGKEEGGET---------PEQAVVRELEEEIGIPQHFS-----EFE   68 (128)
T ss_pred             EEEEEEEECCCCEEEEEEEeCC-CCCCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcceee-----eEE
Confidence            3445555677789999999754 4688999999 999999999         79999999999999986521     223


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +.+.+....     .+...++|.+...+.. +...+..+++|++++++.++
T Consensus        69 ~~~~h~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        69 KLEYEFYPR-----HITLWFWLLERWEGGP-PGKEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             EEEEEECCC-----cEEEEEEEEEEEcCCC-cCcccccccEEeCHHHCCcc
Confidence            333332211     1223345544432221 12335678899999999875

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.62  E-value=9.2e-15  Score=122.47  Aligned_cols=113  Identities=19%  Similarity=0.064  Sum_probs=78.2

Q ss_pred             EEEEEEE--eCCCeEEEeeecCCCCCCCCCeeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           46 AFSVFLF--NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        46 ~v~v~i~--d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      ++.++.+  +.++.+|++||+..-..++|.|++| ||++|++ |+         +++||+||++||||+.+.     .+.
T Consensus        32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~---------~~~tA~REl~EEtGl~~~-----~~~   96 (190)
T PRK10707         32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDAS---------LIATALREAQEEVAIPPS-----AVE   96 (190)
T ss_pred             eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcC-CcccCCCccc---------HHHHHHHHHHHHHCCCcc-----ceE
Confidence            4444434  3345899999987666789999999 9999986 56         799999999999999976     345


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      .++.+...... .++  ....+++.........++++|+.++.|+|++++.++.
T Consensus        97 ~lg~l~~~~~~-~~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707         97 VIGVLPPVDSS-TGY--QVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             EEEEeeeeecc-CCc--EEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence            67766422221 121  1111222222233455678899999999999998874

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=2.2e-14  Score=112.13  Aligned_cols=103  Identities=16%  Similarity=0.075  Sum_probs=72.6

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++++++++. +++||.+|...  ..+|.|++| ||+++.||+         +++||+||++||||+++...     ..+
T Consensus        14 ~~v~~ii~~~-~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~---------~~~a~~REl~EEtGl~~~~~-----~~~   75 (130)
T cd04511          14 IIVGCVPEWE-GKVLLCRRAIE--PRHGFWTLP-AGFMENGET---------TEQGALRETWEEAGARVEID-----GLY   75 (130)
T ss_pred             EEEEEEEecC-CEEEEEEecCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCEEEee-----eEE
Confidence            4556666664 89999998753  257899999 999999999         89999999999999997521     122


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLK  173 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~  173 (225)
                      +.  |..+.     .+.+.++|.+... ..+. ...|..+++|+++++|.
T Consensus        76 ~~--~~~~~-----~~~~~~~f~~~~~~~~~~-~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          76 AV--YSVPH-----ISQVYMFYRARLLDLDFA-PGPESLEVRLFTEEEIP  117 (130)
T ss_pred             EE--EecCC-----ceEEEEEEEEEEcCCccc-CCcchhceEEECHHHCC
Confidence            22  22221     1334555666543 2333 34678899999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.57  E-value=2.1e-14  Score=113.08  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=71.9

Q ss_pred             CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCC
Q 027303           55 KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD  134 (225)
Q Consensus        55 ~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~  134 (225)
                      ++++||.||+..   ..|.|.|| ||++++|||         +.+||+||++||||+.+... .-....++.+.|..+..
T Consensus        12 ~~~~Llvk~~~~---~~g~W~fP-gG~ve~gEt---------~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~   77 (132)
T cd04661          12 DTLVLLVQQKVG---SQNHWILP-QGKREEGET---------LRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKA   77 (132)
T ss_pred             CcEEEEEEeecC---CCCeeECC-cccccCCCC---------HHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcc
Confidence            468899888643   25899999 999999999         89999999999999986521 00001233344443321


Q ss_pred             CCC--cceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303          135 GKW--GEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       135 ~~~--~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      ...  ..+...++|.+.. .+.+.+ .+|+.+++|++++++.+++..
T Consensus        78 ~~~~~~~~~~~~~f~~~~~~g~~~~-~~e~~~~~W~~~~el~~~l~~  123 (132)
T cd04661          78 VRNEGIVGAKVFFFKARYMSGQFEL-SQNQVDFKWLAKEELQKYLNP  123 (132)
T ss_pred             cccccCcccEEEEEEEEEecCcccc-CCCcceeEecCHHHHHhhcCH
Confidence            100  1123455666654 333433 378899999999999987543

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.57  E-value=4.3e-14  Score=113.52  Aligned_cols=112  Identities=21%  Similarity=0.326  Sum_probs=78.5

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      ...++.+++... |++||.||...  .++|.|.+| ||+++.||+         +++||.||++|||||++..+     .
T Consensus         9 p~~~v~~~i~~~-~~iLLvrR~~~--p~~g~WalP-GG~ve~GEt---------~eeaa~REl~EETgL~~~~~-----~   70 (145)
T COG1051           9 PLVAVGALIVRN-GRILLVRRANE--PGAGYWALP-GGFVEIGET---------LEEAARRELKEETGLRVRVL-----E   70 (145)
T ss_pred             cceeeeEEEEeC-CEEEEEEecCC--CCCCcEeCC-CccCCCCCC---------HHHHHHHHHHHHhCCcccce-----e
Confidence            345667776654 69999999854  367999999 999999999         89999999999999996532     2


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEec-Ccccc-CCccccccEEEeCHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~-~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .+..+  ..+..+.+. |.++++|++.. .+.+. .+.++.....|++.+++..+
T Consensus        71 ~~~v~--~~~~rd~r~-~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          71 LLAVF--DDPGRDPRG-HHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             EEEEe--cCCCCCCce-eEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccc
Confidence            34333  333322222 44555555443 34333 33347889999999999875

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=1.1e-13  Score=108.61  Aligned_cols=113  Identities=16%  Similarity=0.074  Sum_probs=72.4

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++.++|+++ |++||.+|..     .+.|.+| ||++++||+         +.+||+||++||||+.+...    ...++
T Consensus         2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~----~~~l~   61 (131)
T cd04686           2 AVRAIILQG-DKILLLYTKR-----YGDYKFP-GGGVEKGED---------HIEGLIRELQEETGATNIRV----IEKFG   61 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEcC-----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCccccc----ceEEE
Confidence            466777774 8999988753     2579998 999999999         89999999999999986321    12334


Q ss_pred             EEEEEcCC--CCCCcceEEEEEEEEecC---ccccCCcccc---ccEEEeCHHHHHHHHHh
Q 027303          126 RILYKAPS--DGKWGEHELDYLLFIVRD---VSVNPNPDEV---AEYKYVNREQLKELLRK  178 (225)
Q Consensus       126 ~~~y~~~~--~~~~~e~~~~~v~~~~~~---~~~~~~~~Ev---~~~~Wv~~eel~~~~~~  178 (225)
                      .+....+.  ......+...++|.+...   .....++.|.   ..++|+|++++.+....
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~~~  122 (131)
T cd04686          62 TYTERRPWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHNEK  122 (131)
T ss_pred             EEEeeccccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhhHH
Confidence            33211111  111111344566666542   2233333333   36899999999886543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.56  E-value=1.3e-13  Score=124.99  Aligned_cols=134  Identities=12%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +.++.+++++ +|++||++|+..  ..+|.|.+| ||++++||+         +++||+||++||||+++....+.. ..
T Consensus       203 ~vtv~avv~~-~g~VLLvrR~~~--p~~g~W~lP-GG~ve~gEt---------~~~Aa~REl~EETGl~v~~~~l~~-~~  268 (340)
T PRK05379        203 FVTVDAVVVQ-SGHVLLVRRRAE--PGKGLWALP-GGFLEQDET---------LLDACLRELREETGLKLPEPVLRG-SI  268 (340)
T ss_pred             ceEEEEEEEE-CCEEEEEEecCC--CCCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCcccccccce-ee
Confidence            3566666665 589999999753  247999999 999999999         899999999999999875322110 00


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecC-cc-c-cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRD-VS-V-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~-~-~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      .....|..+.... ..+.+.++|.+... +. . ....+|+.+++|++++++.++-.         .+......+++.|+
T Consensus       269 ~~~~~f~~p~r~~-~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~---------~~~~dh~~ii~~~~  338 (340)
T PRK05379        269 RDQQVFDHPGRSL-RGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRD---------RMFEDHFQIITHFL  338 (340)
T ss_pred             eeeEEEcCCCCCC-CCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhh---------hhhhHHHHHHHHHh
Confidence            1111223332111 12445555555432 21 1 12346889999999999987511         23345556666665


Q ss_pred             H
Q 027303          201 F  201 (225)
Q Consensus       201 ~  201 (225)
                      +
T Consensus       339 ~  339 (340)
T PRK05379        339 G  339 (340)
T ss_pred             c
Confidence            3

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.54  E-value=5.9e-13  Score=112.54  Aligned_cols=115  Identities=18%  Similarity=0.191  Sum_probs=81.3

Q ss_pred             eEEEEEEEeCC-CeEEEeeecCCCC----CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           45 RAFSVFLFNSK-YELLLQQRSGTKV----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        45 ~~v~v~i~d~~-g~vLL~rRs~~k~----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      .+|.++.++++ ++++|.+.-....    ..+-.|++| +|.+++||+         +++||+|||.||||+.+.     
T Consensus        50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~---------p~~aA~REL~EETGy~a~-----  114 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVG-----  114 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCC---------HHHHHHHHHHHHhCceee-----
Confidence            46777778764 6888875432211    124579999 899999999         799999999999999976     


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc----c--ccCCccccccEEEeCHHHHHHHHHhc
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~----~--~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      .+.+++.+ |..+   +++ .+.+|+|++..+.    .  ...+++|..++.|+|++++.+++.++
T Consensus       115 ~~~~l~~~-~~sp---g~~-~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G  175 (202)
T PRK10729        115 RTKPVLSY-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  175 (202)
T ss_pred             EEEEEEEE-EcCC---CcC-ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence            34556554 3332   333 4556777766311    1  23456777889999999999999886

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.52  E-value=2.3e-13  Score=113.50  Aligned_cols=115  Identities=19%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             eEEEEEEEeCC-CeEEEeeecCCCC----CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           45 RAFSVFLFNSK-YELLLQQRSGTKV----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        45 ~~v~v~i~d~~-g~vLL~rRs~~k~----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      .+|++++++.+ +++||.++.+...    ..++.|++| ||+++.||+         +++||+||++||||+.+..    
T Consensus        45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~----  110 (185)
T TIGR00052        45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGES---------PEDVARREAIEEAGYQVKN----  110 (185)
T ss_pred             CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCC---------HHHHHHHHccccccceecc----
Confidence            36677777654 7888876543211    147899999 999999999         8999999999999999863    


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc-----cccCCccccccEEEeCHHHHHHHHHhc
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-----SVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-----~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                       +..++.+ |..+   +.. .+.+++|++..+.     .....++|..++.|++++++.+++.++
T Consensus       111 -~~~~~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G  169 (185)
T TIGR00052       111 -LRKLLSF-YSSP---GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG  169 (185)
T ss_pred             -eEEEEEE-EcCC---CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence             4556554 3322   222 5566777776421     112244666789999999999999986

>PLN02709 nudix hydrolase

Probab=99.52  E-value=1.5e-13  Score=117.37  Aligned_cols=116  Identities=20%  Similarity=0.154  Sum_probs=79.3

Q ss_pred             cceeEEEEEEEeC------CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCC
Q 027303           42 LLHRAFSVFLFNS------KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  115 (225)
Q Consensus        42 ~~h~~v~v~i~d~------~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~  115 (225)
                      ..+.+|.+.++..      +..+||.+|+.....+||+|.|| ||+++++|.+        +.+||+||++||+||....
T Consensus        31 ~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~--------~~~tAlRE~~EEiGl~~~~  101 (222)
T PLN02709         31 AKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKD--------DIATALREAREEIGLDPSL  101 (222)
T ss_pred             CCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCC--------HHHHHHHHHHHHHCCCchh
Confidence            3456666666642      23799999998766789999999 9999998653        7999999999999998764


Q ss_pred             CCCCceeeeeEEEEEcCCCCCCcceEEE-EEEEEec--CccccCCccccccEEEeCHHHHHHH
Q 027303          116 VPVDEFTPLGRILYKAPSDGKWGEHELD-YLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       116 i~~~~l~~l~~~~y~~~~~~~~~e~~~~-~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +     ..++.+.......    ...++ ++.+...  .....++++||+++.|+|++.+.+.
T Consensus       102 v-----~vlg~L~~~~t~s----g~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        102 V-----TIISVLEPFVNKK----GMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             e-----EEeeecCCeECCC----CCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence            3     2344432211111    12232 2222322  2344578899999999999999764

>PRK08999 hypothetical protein; Provisional

Probab=99.48  E-value=6.6e-13  Score=118.29  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=74.6

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      ..+.+++.+.+|++||+||.... .++|+|++| ||+++.||+         +.+||.||++||||+.+...     ..+
T Consensus         6 ~~~~~vi~~~~~~vLL~kR~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~l   69 (312)
T PRK08999          6 HVAAGVIRDADGRILLARRPEGK-HQGGLWEFP-GGKVEPGET---------VEQALARELQEELGIEVTAA-----RPL   69 (312)
T ss_pred             EEEEEEEECCCCeEEEEEecCCC-CCCCeEECC-ccCCCCCCC---------HHHHHHHHHHHHhCCceecc-----eeE
Confidence            34555667777899999997544 689999999 999999999         79999999999999987532     223


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +...+..+. .    ....++|.+.. ...  ++..|..+++|++++++.++
T Consensus        70 ~~~~h~~~~-~----~~~i~~y~~~~~~~~--~~~~e~~~~~Wv~~~el~~~  114 (312)
T PRK08999         70 ITVRHDYPD-K----RVRLDVRRVTAWQGE--PHGREGQPLAWVAPDELAVY  114 (312)
T ss_pred             EEEEEEcCC-C----eEEEEEEEEEEecCc--ccCccCCccEEecHHHcccC
Confidence            443333221 1    22234454432 222  33456788999999998764

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.43  E-value=5.9e-12  Score=105.58  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=80.2

Q ss_pred             eEEEEEEEeC-CCeEEEeeecCCCC-----CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           45 RAFSVFLFNS-KYELLLQQRSGTKV-----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        45 ~~v~v~i~d~-~g~vLL~rRs~~k~-----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      .+|++++++. +++++|.++-+...     ..+-.|++| +|.++.+ +         +++||+|||+||||+.+.    
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~---------p~~aA~REL~EETGy~a~----  110 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-E---------PEVCIRKEAIEETGYEVG----  110 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-C---------HHHHHHHHHHHhhCCccc----
Confidence            4677777775 56888876543221     023569999 8999865 6         699999999999999976    


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-----ccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-----VSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-----~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                       ++.+++.+ |..|   +.+ .+.+|+|.+...     .....+++|..++.|+|++++.+++.++
T Consensus       111 -~~~~l~~~-~~sp---G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G  170 (191)
T PRK15009        111 -EVRKLFEL-YMSP---GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG  170 (191)
T ss_pred             -eEEEeeEE-EcCC---ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence             35566654 4433   333 456677777642     1122356788899999999999999986

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.43  E-value=8.1e-12  Score=101.60  Aligned_cols=129  Identities=15%  Similarity=0.139  Sum_probs=84.8

Q ss_pred             EEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhh
Q 027303           15 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA   94 (225)
Q Consensus        15 ~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~   94 (225)
                      .-|.+|+.+--.-...  +      ......+|.++... ++++||.++..      ..|++| ||++++||+       
T Consensus         3 f~d~~~~~v~l~~~~~--~------~~~~~~~V~ii~~~-~~~~LL~~~~~------~~~elP-gG~vE~gEt-------   59 (156)
T TIGR02705         3 FIDYYGNKVTLAFEKE--P------FSPNPNHVLVIPRY-KDQWLLTEHKR------RGLEFP-GGKVEPGET-------   59 (156)
T ss_pred             eEcCCCCEEEEEEeCC--c------ccCCCCEEEEEEEE-CCEEEEEEEcC------CcEECC-ceecCCCCC-------
Confidence            3477888776653331  0      01112344444454 45888876642      359998 999999999       


Q ss_pred             hcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEE-EeCHHHHH
Q 027303           95 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYK-YVNREQLK  173 (225)
Q Consensus        95 ~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~-Wv~~eel~  173 (225)
                        +++||+||++||||+.+.     .+.+++.+....  +.  . ....++|++... ..... +|..+.. +++++++.
T Consensus        60 --~~eaA~REl~EETG~~~~-----~~~~lg~~~~~~--~~--~-~~~~~vf~A~~~-~~~~~-~e~~E~~~~~~~~~~~  125 (156)
T TIGR02705        60 --SKEAAIREVMEETGAIVK-----ELHYIGQYEVEG--ES--T-DFVKDVYFAEVS-ALESK-DDYLETKGPVLLQEIP  125 (156)
T ss_pred             --HHHHHHHHHHHHhCcEee-----eeEEEEEEEecC--CC--c-EEEEEEEEEEEe-ccccC-CCceeeEeEEEHHHHH
Confidence              799999999999999876     456777653321  11  1 445567776654 22222 5556666 79999999


Q ss_pred             HHHHhcc
Q 027303          174 ELLRKAD  180 (225)
Q Consensus       174 ~~~~~~~  180 (225)
                      +++..++
T Consensus       126 ~~~~~g~  132 (156)
T TIGR02705       126 DIIKADP  132 (156)
T ss_pred             HHHhcCC
Confidence            9998863

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.36  E-value=1.2e-11  Score=97.24  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=45.5

Q ss_pred             EEEEEEEe--C-CCeEEEeeecCC--CCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC
Q 027303           46 AFSVFLFN--S-KYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  114 (225)
Q Consensus        46 ~v~v~i~d--~-~g~vLL~rRs~~--k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~  114 (225)
                      ++++++++  . ..++||++|...  +...++.|++| ||+++.||+         +.+||+||++||||+++.
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~---------~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGED---------PLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcC---------HHHHHHHHHHHHhCCcce
Confidence            45566654  2 236888876432  22456899999 999999999         799999999999999975

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.35  E-value=2.2e-12  Score=112.96  Aligned_cols=112  Identities=17%  Similarity=0.296  Sum_probs=81.9

Q ss_pred             CcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303           41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  120 (225)
Q Consensus        41 ~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~  120 (225)
                      +..-+++.+.+.+. +++||.++...   +||++..- +|.|++|||         +++|+.||++||+|+++.+     
T Consensus       141 PR~dP~vIv~v~~~-~~ilLa~~~~h---~~g~yS~L-AGFVE~GET---------lE~AV~REv~EE~Gi~V~~-----  201 (279)
T COG2816         141 PRIDPCVIVAVIRG-DEILLARHPRH---FPGMYSLL-AGFVEPGET---------LEQAVAREVFEEVGIKVKN-----  201 (279)
T ss_pred             CCCCCeEEEEEecC-CceeecCCCCC---CCcceeee-eecccCCcc---------HHHHHHHHHHHhhCeEEee-----
Confidence            33456776666665 45787776643   48999986 899999999         9999999999999999874     


Q ss_pred             eeeeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303          121 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      +.+.++..+..|.+       +.--|.+.. .++++++..|+.+.+|++.+|+..++..
T Consensus       202 vrY~~SQPWPfP~S-------LMigf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~  253 (279)
T COG2816         202 VRYVGSQPWPFPHS-------LMLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALPP  253 (279)
T ss_pred             eeEEeccCCCCchh-------hhhhheeeeccccccCCcchhhhccccCHhHHhhhcCC
Confidence            34555554544432       222234443 4568889899999999999997776654

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.35  E-value=1.4e-11  Score=95.79  Aligned_cols=100  Identities=18%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      +|.++++++ +++||.++.      .+.|++| ||++++||+         +++||+||+.||+|+.+.     .+.+++
T Consensus         2 ~v~vi~~~~-~~vLl~~~~------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EE~G~~~~-----~~~~l~   59 (118)
T cd04665           2 SVLVICFYD-DGLLLVRHK------DRGWEFP-GGHVEPGET---------IEEAARREVWEETGAELG-----SLTLVG   59 (118)
T ss_pred             EEEEEEEEC-CEEEEEEeC------CCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccC-----ceEEEE
Confidence            355566664 788888765      2579999 999999999         799999999999999985     345676


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQL  172 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel  172 (225)
                      .+.+...  ..   ....++|.+.. .........|+....|++.+..
T Consensus        60 ~~~~~~~--~~---~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          60 YYQVDLF--ES---GFETLVYPAVSAQLEEKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEecCC--CC---cEEEEEEEEEEEecccccccccccCcEEeccCCc
Confidence            6544321  11   23345555543 2222224588999999986654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.25  E-value=1.4e-10  Score=90.24  Aligned_cols=56  Identities=20%  Similarity=0.141  Sum_probs=43.0

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  114 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~  114 (225)
                      ++.+++..+++ +||.+|+..  ..+|.|.+| ||+++.||+         +.+||+||+.||||+.+.
T Consensus         6 ~av~vl~~~~~-~lL~~r~~~--~~~~~w~lP-gG~ve~~E~---------~~~aa~REl~EE~g~~~~   61 (118)
T cd04674           6 VVVALLPVDDG-LLVIRRGIE--PGRGKLALP-GGFIELGET---------WQDAVARELLEETGVAVD   61 (118)
T ss_pred             EEEEEEEECCC-EEEEEeecC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccc
Confidence            34444444444 555566532  357999999 999999999         899999999999999976

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.25  E-value=4.1e-12  Score=112.13  Aligned_cols=142  Identities=19%  Similarity=0.264  Sum_probs=92.4

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      .-.+|...|++.+|+.+|..|.  +..-||+|..+ +|.+|+|||         .++||+||++||+|+++..+.     
T Consensus       186 ~dPvVIm~li~~d~~~~LL~R~--~r~~~gl~t~l-AGFlEpGES---------~eeav~REtwEEtGi~V~~I~-----  248 (345)
T KOG3084|consen  186 TDPVVIMLLIDHDGKHALLGRQ--KRYPPGLWTCL-AGFLEPGES---------IEEAVRRETWEETGIEVEVIS-----  248 (345)
T ss_pred             CCCeEEEEEEcCCCCEeeeecc--cCCCCchhhhh-hccCCcccc---------HHHHHHHHHHHHhCceeeeEe-----
Confidence            3467788888988865555563  44568999998 899999999         899999999999999987432     


Q ss_pred             eeeEEEEE-cCCCCCCcceEEEEEEEEecCccccCCcc-ccccEEEeCHHHHHHHHHhccCCC----CCcccChhHHHHH
Q 027303          123 PLGRILYK-APSDGKWGEHELDYLLFIVRDVSVNPNPD-EVAEYKYVNREQLKELLRKADAGE----EGLKLSPWFRLVV  196 (225)
Q Consensus       123 ~l~~~~y~-~~~~~~~~e~~~~~v~~~~~~~~~~~~~~-Ev~~~~Wv~~eel~~~~~~~~~~~----~~~~~~p~~~~~~  196 (225)
                      +.....+. .|..     ..+-++-++..+..++.+.+ |..+.+|++.+|+.+.+...+..-    .-..+.|.-..+.
T Consensus       249 ~~asQPWP~~p~S-----LMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~kg~~Rv~~~~a~i~~P~~~aIA  323 (345)
T KOG3084|consen  249 YVASQPWPLMPQS-----LMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKSALTTKGLVRVQIEKALILIPPPFAIA  323 (345)
T ss_pred             eeecCCCCCCchH-----HHHHHHHHHhhCCccccCcchhhhhcccccHHHHHHHHHhcCCccccccCcceecCChhHHH
Confidence            11111111 1100     00001112223456677777 999999999999999988532100    0135666666666


Q ss_pred             HHHHHHHHhh
Q 027303          197 DNFLFKWWDH  206 (225)
Q Consensus       197 ~~~l~~~~~~  206 (225)
                      .+.+..|-+.
T Consensus       324 ~qLI~~~~~~  333 (345)
T KOG3084|consen  324 HQLILHWVGF  333 (345)
T ss_pred             HHHHHHHHcc
Confidence            6666666543

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.17  E-value=3e-10  Score=89.37  Aligned_cols=51  Identities=22%  Similarity=0.143  Sum_probs=38.7

Q ss_pred             EEEEEEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCC
Q 027303           47 FSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA  113 (225)
Q Consensus        47 v~v~i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~  113 (225)
                      +.+++.+.++  ++++.|.. .     +.|++| ||++++||+         +.+||+||++||||+..
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~-~-----~~~~lP-gG~ve~~E~---------~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHP-L-----AGFQIV-KGTVEPGET---------PEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcC-C-----CcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCee
Confidence            3445554444  55555443 2     459998 999999999         89999999999999996

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=99.16  E-value=1.4e-10  Score=99.45  Aligned_cols=167  Identities=17%  Similarity=0.181  Sum_probs=124.4

Q ss_pred             ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEE--EEEeCC-C--eEEEeeecCCCCCCCCCeeeccccCCC
Q 027303            9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV--FLFNSK-Y--ELLLQQRSGTKVTFPLVWTNTCCSHPL   83 (225)
Q Consensus         9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v--~i~d~~-g--~vLL~rRs~~k~~~pg~W~~p~gG~ve   83 (225)
                      .+|...+| .+.+++=..+|.....      .|....++++  .+.+++ +  +++++|||.+|.+|||+|+..+||++.
T Consensus       103 rne~Y~v~-~~kkp~l~vERa~~~l------fGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~  175 (306)
T KOG4313|consen  103 RNELYTVY-KSKKPVLAVERAATPL------FGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLS  175 (306)
T ss_pred             cceeeEEE-ecCcceeEeeecccce------eeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccc
Confidence            56777888 8888888888875443      3444444444  344554 3  689999999999999999999999999


Q ss_pred             CCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec--CccccCCcccc
Q 027303           84 YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEV  161 (225)
Q Consensus        84 ~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev  161 (225)
                      .|-.         +.++|+.|..||.+|....  .+.+...|++.|....+..+-..+..|+|-...  +.-++++++|+
T Consensus       176 ~g~g---------I~eT~iKE~~EEAnl~~~~--~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV  244 (306)
T KOG4313|consen  176 VGFG---------IKETAIKEAAEEANLPSDL--VKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEV  244 (306)
T ss_pred             cCch---------HHHHHHHHHHHhcCCchhh--HhcceecceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCce
Confidence            9999         8999999999999999732  345777888777632222222245557775443  45567889999


Q ss_pred             ccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          162 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       162 ~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      +.+..+++.+..+.+...       .|.|..+.++=+||
T Consensus       245 ~~F~Lltl~~~v~~l~~k-------~FKpncAlV~iDfl  276 (306)
T KOG4313|consen  245 QAFELLTLKDCVERLFTK-------DFKPNCALVVIDFL  276 (306)
T ss_pred             eeEeeecHHHHHHHHHhh-------ccCCCcceEEEEEe
Confidence            999999999998888774       58888877776664

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.16  E-value=2e-10  Score=95.91  Aligned_cols=103  Identities=13%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc---------eeeeeEE
Q 027303           57 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE---------FTPLGRI  127 (225)
Q Consensus        57 ~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~---------l~~l~~~  127 (225)
                      ++|+.+|..     +|.|.+| ||+++++|+         +.+||.||+.||||+.+..+..+.         +..-...
T Consensus        50 ~vLl~~r~~-----~g~walP-GG~v~~~E~---------~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~  114 (186)
T cd03670          50 QFVAIKRPD-----SGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVE  114 (186)
T ss_pred             EEEEEEeCC-----CCcCcCC-eeeccCCCC---------HHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccE
Confidence            677788853     4899999 999999999         899999999999987654332211         0000112


Q ss_pred             EEEcCCC------CCCcceEEEEEEEEecC---ccccC-CccccccEEEeCHHHHHHH
Q 027303          128 LYKAPSD------GKWGEHELDYLLFIVRD---VSVNP-NPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       128 ~y~~~~~------~~~~e~~~~~v~~~~~~---~~~~~-~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .|..+..      ..|. +.+.+.|.....   ....+ ..++..+++|++++++..+
T Consensus       115 vy~~~~~dpr~td~~w~-~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L  171 (186)
T cd03670         115 VYKGYVDDPRNTDNAWM-ETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPL  171 (186)
T ss_pred             EEeccccCCCCCCcceE-EEEEEEEEecCcccccccccCCCCchheeEEEEccccccc
Confidence            2332221      1233 233344433211   11222 2467899999999998754

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN03143 nudix hydrolase; Provisional

Probab=99.11  E-value=9.6e-10  Score=97.65  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             eEEEEEEE-eCCCe--EEEeeecCCCCCCCCCeeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303           45 RAFSVFLF-NSKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  120 (225)
Q Consensus        45 ~~v~v~i~-d~~g~--vLL~rRs~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~  120 (225)
                      .+|++++. +.+++  ++|+++.+.. ...-.|++| ||.+|++ |+         +++||+||++||||+.+..   .+
T Consensus       129 ~aVaVL~~l~~~ge~~VlLVrQ~R~p-vg~~~lE~P-AG~lD~~~ed---------p~~aA~REL~EETG~~~~a---~~  194 (291)
T PLN03143        129 PAVAVLILLESEGETYAVLTEQVRVP-VGKFVLELP-AGMLDDDKGD---------FVGTAVREVEEETGIKLKL---ED  194 (291)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEeEecC-CCcEEEEec-ccccCCCCCC---------HHHHHHHHHHHHHCCcccc---ce
Confidence            35565554 54555  7777665322 223489999 8999975 78         7999999999999998642   12


Q ss_pred             eeeeeE--------EEEEcCCCCCCcceEEEEEEEEecCcc------------ccCCccccccEEEeCHHHHHHHHHh
Q 027303          121 FTPLGR--------ILYKAPSDGKWGEHELDYLLFIVRDVS------------VNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       121 l~~l~~--------~~y~~~~~~~~~e~~~~~v~~~~~~~~------------~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      +..+..        -.|..+   +.+ .+.+++|.+.....            ...+++|...+.|++++++.+++..
T Consensus       195 lv~L~~~~~~~~g~~v~psp---G~~-dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD  268 (291)
T PLN03143        195 MVDLTAFLDPSTGCRMFPSP---GGC-DEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD  268 (291)
T ss_pred             EEEeeeccccCcCceEEecC---Ccc-CCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh
Confidence            333321        123322   223 33445665443210            1235578889999999999998754

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.11  E-value=7.3e-10  Score=84.73  Aligned_cols=116  Identities=22%  Similarity=0.274  Sum_probs=67.2

Q ss_pred             EEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHH-HHHHHHHhHhCCCCCCCCCCceee
Q 027303           46 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN-AAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        46 ~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~e-aa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      ++.+.+.... +++|+++|....    +.|.+| ||+++.||+         +.+ ||+||++||||+.+...   .+..
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~---------~~~~aa~RE~~EEtGl~~~~~---~~~~   75 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEE---------LPEEAAARELEEETGLRVKDE---RLEL   75 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCc---------hHHHHHHHHHHHHhCCeeeee---ccee
Confidence            3344444333 789998887543    799999 999999999         466 99999999999998731   1223


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec----CccccCC---ccccccEEEeCHHHHHHHHHh
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR----DVSVNPN---PDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~----~~~~~~~---~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      ++.+..................+....    .......   ..|...+.|++++++......
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  137 (161)
T COG0494          76 LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLA  137 (161)
T ss_pred             eeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccccc
Confidence            333322211111000011111111211    1111111   357899999999998876443

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=99.10  E-value=3.9e-10  Score=96.09  Aligned_cols=112  Identities=21%  Similarity=0.121  Sum_probs=77.1

Q ss_pred             eEEEEEEEeC-CC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           45 RAFSVFLFNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        45 ~~v~v~i~d~-~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      .+|.+.+++. +|  ++||+||+.+-..++|.-.|| ||..++.+.+        ...+|.||.+||+|+....+.    
T Consensus        44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s--------~~~tAlREt~EEIGl~~~~~~----  110 (246)
T KOG3069|consen   44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKS--------DIQTALRETEEEIGLDPELVD----  110 (246)
T ss_pred             ccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccc--------hHHHHHHHHHHHhCCCHHHhh----
Confidence            4556666664 33  799999999999999999999 9999998775        689999999999999986432    


Q ss_pred             eeeeEEEE-EcCCCCCCcceEEEE-EEEEecC---ccccCCccccccEEEeCHHHHHHH
Q 027303          122 TPLGRILY-KAPSDGKWGEHELDY-LLFIVRD---VSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       122 ~~l~~~~y-~~~~~~~~~e~~~~~-v~~~~~~---~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                       .++.+.- ...  .+|.   +.- +.+....   ....++++|+.++.|||++++..-
T Consensus       111 -~~g~l~~~~~r--~~~~---v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~  163 (246)
T KOG3069|consen  111 -VLGALPPFVLR--SGWS---VFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP  163 (246)
T ss_pred             -hhhhccceeec--cCcc---cceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence             2332210 000  1121   111 1111112   345688999999999999998654

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.04  E-value=8.6e-09  Score=77.86  Aligned_cols=112  Identities=18%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             EEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEE
Q 027303           48 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI  127 (225)
Q Consensus        48 ~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~  127 (225)
                      .++++.++|++||+||.. +..|+|+|+|| ||.++.+++         .+++..|++.++.++...        .++.+
T Consensus         6 ~~~ii~~~~~~ll~kR~~-~gl~~glwefP-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--------~~~~~   66 (118)
T cd03431           6 AVVVIRNDGRVLLEKRPE-KGLLAGLWEFP-SVEWEEEAD---------GEEALLSALKKALRLSLE--------PLGTV   66 (118)
T ss_pred             EEEEEecCCeEEEEECCC-CCCCCcceeCC-CccccCCcC---------HHHHHHHHHHHHhCcccc--------cceeE
Confidence            333344468999999975 45799999999 888888888         688888999888775111        12333


Q ss_pred             EEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303          128 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN  198 (225)
Q Consensus       128 ~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~  198 (225)
                      .+....     .+...++|.+......    .+..++.|++++++.++           .+++..+.+++.
T Consensus        67 ~H~fth-----~~~~~~~~~~~~~~~~----~~~~~~~W~~~eel~~~-----------~~p~~~~kil~~  117 (118)
T cd03431          67 KHTFTH-----FRLTLHVYLARLEGDL----LAPDEGRWVPLEELDEY-----------ALPTVMRKILEL  117 (118)
T ss_pred             EEecCC-----eEEEEEEEEEEEeCCC----cCccccEEccHHHHhhC-----------CCCHHHHHHHHh
Confidence            222210     0112244444432111    24567899999998875           356655555543

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.84  E-value=3.8e-08  Score=78.27  Aligned_cols=127  Identities=20%  Similarity=0.254  Sum_probs=76.4

Q ss_pred             ceeEEEEEEEeCCC---eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           43 LHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        43 ~h~~v~v~i~d~~g---~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      +..+++|+.+..++   ++||..-++    .|-.|-+| +|+++++|+         ..+||.||..||.|+.-....  
T Consensus         8 ~r~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~P-KGGwE~dE~---------~~eAA~REt~EEAGv~G~l~~--   71 (145)
T KOG2839|consen    8 FRLVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVP-KGGWEPDES---------VEEAALRETWEEAGVKGKLGR--   71 (145)
T ss_pred             cEEEEEeeeeeecCcceEEEEEecCC----CCCCccCC-CCCCCCCCC---------HHHHHHHHHHHHhCceeeeec--
Confidence            44556666665443   688876553    24678888 899999999         799999999999999976321  


Q ss_pred             ceeeeeEE-EEEcCCCCCCcceEEEEEEEEecCccc--cC-CccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHH
Q 027303          120 EFTPLGRI-LYKAPSDGKWGEHELDYLLFIVRDVSV--NP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV  195 (225)
Q Consensus       120 ~l~~l~~~-~y~~~~~~~~~e~~~~~v~~~~~~~~~--~~-~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~  195 (225)
                         .++.+ .+.....  +.. .-.+.|.......+  -+ ...|..+.+|++++|....+..           .|.+..
T Consensus        72 ---~~~g~~~~~~~~~--~~~-~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~-----------~~m~~a  134 (145)
T KOG2839|consen   72 ---LLGGFEDFLSKKH--RTK-PKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQH-----------KWMKAA  134 (145)
T ss_pred             ---cccchhhccChhh--ccc-ccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhh-----------HHHHHH
Confidence               12222 1222211  111 11123322221111  11 1245889999999999888652           455566


Q ss_pred             HHHHHHH
Q 027303          196 VDNFLFK  202 (225)
Q Consensus       196 ~~~~l~~  202 (225)
                      ++.++..
T Consensus       135 l~e~~~~  141 (145)
T KOG2839|consen  135 LEEFLQF  141 (145)
T ss_pred             HHHHHHH
Confidence            6666544

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.51  E-value=6.2e-06  Score=68.98  Aligned_cols=109  Identities=17%  Similarity=0.066  Sum_probs=69.9

Q ss_pred             EEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEE
Q 027303           51 LFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL  128 (225)
Q Consensus        51 i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~  128 (225)
                      ++..+|  .++|++.-+ .+...-+.++| +|-++.||+         ++.||+|||+||||++-...      ......
T Consensus        81 il~~dG~~~ivL~kQfR-pP~Gk~ciElP-AGLiD~ge~---------~~~aAiREl~EEtGy~gkv~------~~s~~~  143 (225)
T KOG3041|consen   81 ILESDGKPYIVLVKQFR-PPTGKICIELP-AGLIDDGED---------FEGAAIRELEEETGYKGKVD------MVSPTV  143 (225)
T ss_pred             EEecCCcEEEEEEEeec-CCCCcEEEEcc-cccccCCCc---------hHHHHHHHHHHHhCccceee------eccccE
Confidence            444556  466665432 22334578998 899999999         89999999999999994421      112233


Q ss_pred             EEcCCCCCCcceEEEEEE-EEecC--cc----ccCCccccccEEEeCHHHHHHHHHhc
Q 027303          129 YKAPSDGKWGEHELDYLL-FIVRD--VS----VNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       129 y~~~~~~~~~e~~~~~v~-~~~~~--~~----~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      |..|   +..+...+.+. .+..+  .+    ..+++.|..+++-+++.+|.+.+...
T Consensus       144 f~DP---Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l  198 (225)
T KOG3041|consen  144 FLDP---GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADL  198 (225)
T ss_pred             EcCC---CCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhh
Confidence            4544   33333333222 22222  11    23567899999999999998887764

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.48  E-value=1.1e-07  Score=83.98  Aligned_cols=118  Identities=17%  Similarity=0.195  Sum_probs=78.7

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      ..+++++++|.+++||+++-.......+|.|-+| +|.++++|+         +-++|+||++||||++-.-.      .
T Consensus       115 ~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~---------i~~gavrEvkeetgid~ef~------e  178 (295)
T KOG0648|consen  115 RVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGED---------IWHGAVREVKEETGIDTEFV------E  178 (295)
T ss_pred             heeeeeeEecCCceeEEEEecccceeeccccccc-ceEeccccc---------chhhhhhhhHHHhCcchhhh------h
Confidence            3568888999888999976544555678999999 789999999         89999999999999965421      1


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec---CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +-.+  .......+....-..+++|.-   ...++.+..|+.+++|+++++.......+
T Consensus       179 Vla~--r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~  235 (295)
T KOG0648|consen  179 VLAF--RRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVH  235 (295)
T ss_pred             HHHH--HhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccc
Confidence            1111  111111111001112233322   23456677888899999999888876654

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.32  E-value=1.8e-06  Score=65.82  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             EEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEE
Q 027303           49 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL  128 (225)
Q Consensus        49 v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~  128 (225)
                      +++++.+|++||+||.. +..|.|+|+|| .--.+...+          .+++.+.+.+..|+.+...     ..++.+.
T Consensus         2 ~~i~~~~~~~Ll~kRp~-~gll~GLwefP-~~e~~~~~~----------~~~l~~~~~~~~~~~~~~~-----~~~~~v~   64 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPE-KGLLAGLWEFP-LIESDEEDD----------EEELEEWLEEQLGLSIRSV-----EPLGTVK   64 (114)
T ss_dssp             EEEEETTSEEEEEE--S-SSTTTT-EE---EEE-SSS-C----------HHHHHHHTCCSSS-EEEE------S-SEEEE
T ss_pred             EEEEEeCCEEEEEECCC-CChhhcCcccC-EeCccCCCC----------HHHHHHHHHHHcCCChhhh-----eecCcEE
Confidence            46678889999999984 56799999999 433332223          4555555667777765421     2344443


Q ss_pred             EEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303          129 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       129 y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +....     -+...++|.+........   ...+.+|++++++.++
T Consensus        65 H~fSH-----~~~~~~~~~~~~~~~~~~---~~~~~~W~~~~~l~~~  103 (114)
T PF14815_consen   65 HVFSH-----RRWTIHVYEVEVSADPPA---EPEEGQWVSLEELDQY  103 (114)
T ss_dssp             EE-SS-----EEEEEEEEEEEEE-SS-------TTEEEEEGGGGGGS
T ss_pred             EEccc-----eEEEEEEEEEEecCCCCC---CCCCcEEEEHHHHhhC
Confidence            33210     011224444443322111   4578999999999764

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=98.03  E-value=6.8e-05  Score=61.03  Aligned_cols=132  Identities=16%  Similarity=0.276  Sum_probs=79.8

Q ss_pred             EEEEEeCCCeEEEeeecC--CCCCCCCCeeeccccCCCCCCChhhhhhhhc-HHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           48 SVFLFNSKYELLLQQRSG--TKVTFPLVWTNTCCSHPLYRESELIEENALG-VRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        48 ~v~i~d~~g~vLL~rRs~--~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~-~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .|+|.| .+++|+..|..  ......+.+++.+|||+..++-+.   +... +.-.+.||+.||+++.-.+.  ..+.++
T Consensus        65 Yvvi~~-edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~---s~~evLk~n~~REleEEv~vseqd~--q~~e~l  138 (203)
T COG4112          65 YVVIMD-EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGAT---SREEVLKGNLERELEEEVDVSEQDL--QELEFL  138 (203)
T ss_pred             EEEEec-CCEEEEEEeccCcchhhhccccccccccccccCCCcc---cHHHHHccchHHHHHHHhCcCHHHh--hhheee
Confidence            444555 46999998853  223346888999999999876631   1111 23347899999999996642  345666


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  197 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~  197 (225)
                      |-+   +...+..+.-++-.+|..+.. ......+.+.-+++|+.+++|.+.         +..+..|.+.+++
T Consensus       139 GlI---Ndd~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~---------y~~~EtWS~~~~~  200 (203)
T COG4112         139 GLI---NDDTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKF---------YGVMETWSKISAA  200 (203)
T ss_pred             eee---cCCCcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHH---------hhhhHHHHHHHHH
Confidence            654   222222222222234444432 223344566789999999999984         2356666665554

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=97.79  E-value=0.00021  Score=56.01  Aligned_cols=91  Identities=22%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             CCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCc-----ceEEE--
Q 027303           71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG-----EHELD--  143 (225)
Q Consensus        71 pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~-----e~~~~--  143 (225)
                      -|.|.+| -|....||+         +.-||+||.-||+||.+..    .+..++.+..  + +++..     +-++.  
T Consensus        35 ~GAWSIP-KGey~~gEd---------p~~AArREf~EE~Gi~vdG----P~~~lG~~kQ--~-GGKvVta~~veae~Dva   97 (161)
T COG4119          35 DGAWSIP-KGEYTGGED---------PWLAARREFSEEIGICVDG----PRIDLGSLKQ--S-GGKVVTAFGVEAELDVA   97 (161)
T ss_pred             CCccccc-ccccCCCcC---------HHHHHHHHhhhhhceeecC----chhhhhhhcc--C-CCcEEEEEeeeeeeehh
Confidence            3789999 789999999         7999999999999999862    2334444321  1 11100     00000  


Q ss_pred             ----EEEEEec---CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          144 ----YLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       144 ----~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                          ..|...-   .+..+ .-.|++...|+++.+...-+..+
T Consensus        98 ~~rSntFe~eWPprSG~M~-~FPEVDRagWF~l~eAr~Kil~g  139 (161)
T COG4119          98 DARSNTFELEWPPRSGKMR-KFPEVDRAGWFPLAEARTKILKG  139 (161)
T ss_pred             hhhcceeeeecCCCCCccc-cCcccccccceecHHHHhHHhhc
Confidence                0111110   11111 12478999999999999888774

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.46  E-value=0.039  Score=50.60  Aligned_cols=33  Identities=18%  Similarity=0.167  Sum_probs=23.9

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeec
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT   77 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p   77 (225)
                      .+...++++..++++||.||... ..|.|+|+||
T Consensus       230 ~~~~~~~~~~~~~~~~l~~r~~~-gl~~gl~~fP  262 (350)
T PRK10880        230 ERTGYFLLLQHGDEVWLEQRPPS-GLWGGLFCFP  262 (350)
T ss_pred             eEEEEEEEEEECCEEEEEECCcc-ChhhccccCC
Confidence            34444444545689999999854 5789999999

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=94.91  E-value=0.031  Score=47.88  Aligned_cols=116  Identities=18%  Similarity=0.216  Sum_probs=64.6

Q ss_pred             EEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC---CCc-eeeeeEEEEEcCC
Q 027303           58 LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP---VDE-FTPLGRILYKAPS  133 (225)
Q Consensus        58 vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~---~~~-l~~l~~~~y~~~~  133 (225)
                      ++.+||+..     |.|.+| ||.+++||-         +-.+.+||..||.==......   +.+ |.-.+.-.|..-.
T Consensus       141 ~vavkr~d~-----~~WAiP-GGmvdpGE~---------vs~tLkRef~eEa~ns~~k~~e~~l~~~~~~~g~evYkGYv  205 (275)
T KOG4195|consen  141 FVAVKRPDN-----GEWAIP-GGMVDPGEK---------VSATLKREFGEEAMNSLQKSNEEMLHKLLSQCGMEVYKGYV  205 (275)
T ss_pred             EEEEecCCC-----CcccCC-CCcCCchhh---------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCeEEeeeec
Confidence            445577643     789999 999999999         899999999999644333221   110 1123333344322


Q ss_pred             ------CCCCcceEEEEEEEEecCc----cccCC-ccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          134 ------DGKWGEHELDYLLFIVRDV----SVNPN-PDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       134 ------~~~~~e~~~~~v~~~~~~~----~~~~~-~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                            ++.|++....  -+-..++    .+.+. .+....++|+..+.=..+-++         .+.+++++.+++
T Consensus       206 DDpRNTDNaWmET~av--n~hde~g~~~~nl~L~AgDda~~vrW~dVn~~l~LyAs---------hs~fi~lvae~r  271 (275)
T KOG4195|consen  206 DDPRNTDNAWMETVAV--NFHDEDGNNMDNLNLEAGDDAKKVRWVDVNSNLPLYAS---------HSQFIQLVAEKR  271 (275)
T ss_pred             CCCCcccccceeEEEE--eeeccccchhccccccccCcccceeEEEecCCccchhh---------HHHHHHHHHHHh
Confidence                  2345432211  1112222    12222 355778999998866555443         445555555544

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=94.20  E-value=0.33  Score=43.52  Aligned_cols=84  Identities=15%  Similarity=0.157  Sum_probs=49.3

Q ss_pred             hhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEE-EEecC----ccccCCccccccEE
Q 027303           91 EENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLL-FIVRD----VSVNPNPDEVAEYK  165 (225)
Q Consensus        91 ~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~-~~~~~----~~~~~~~~Ev~~~~  165 (225)
                      .+|.|. .+-|.||..||.|.++.   .+++.....+  ....+. .+..+-.|+. +...+    +....+++|..++-
T Consensus       294 d~p~s~-~e~a~~e~veecGYdlp---~~~~k~va~y--~sGVG~-SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv  366 (405)
T KOG4432|consen  294 DDPFSD-PEKAARESVEECGYDLP---EDSFKLVAKY--ISGVGQ-SGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVV  366 (405)
T ss_pred             CCCccc-HHHHHHHHHHHhCCCCC---HHHHhhhhee--ecccCC-cCCeeEEEEEEeehhhccCCCCCcccccceeeEE
Confidence            334333 45677899999999976   4445444433  322111 1112222212 22221    22334567888999


Q ss_pred             EeCHHHHHHHHHhccC
Q 027303          166 YVNREQLKELLRKADA  181 (225)
Q Consensus       166 Wv~~eel~~~~~~~~~  181 (225)
                      -+|+++++++..+++.
T Consensus       367 ~lsle~a~~~~~q~~I  382 (405)
T KOG4432|consen  367 RLSLEDAPSLYRQHNI  382 (405)
T ss_pred             EechhhhhHHHhccCC
Confidence            9999999999999865

>PF14443 DBC1: DBC1

Probab=92.98  E-value=0.84  Score=35.87  Aligned_cols=66  Identities=17%  Similarity=0.240  Sum_probs=38.2

Q ss_pred             EEEeeecCCCCCCCCCeeecc-ccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCC
Q 027303           58 LLLQQRSGTKVTFPLVWTNTC-CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS  133 (225)
Q Consensus        58 vLL~rRs~~k~~~pg~W~~p~-gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~  133 (225)
                      +|+.+|.+.-..-.|.|+... ||....+-+.        +..+|+|=.++-|||+.+.-.  +...+..++|..+.
T Consensus        10 Flv~~k~ke~~aiGG~WspsLDG~DP~~dp~~--------LI~TAiR~~K~~tgiDLS~Ct--~W~rf~Ei~Y~R~~   76 (126)
T PF14443_consen   10 FLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSV--------LIRTAIRTCKALTGIDLSNCT--QWYRFAEIHYYRPG   76 (126)
T ss_pred             eEEeecCceEEecCCcCCcccCCCCCCCCcHH--------HHHHHHHHHHHHhccchhhcC--ccceeeEEEEecCC
Confidence            444444432223357788653 3333333333        789999999999999987422  22223345666554

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=92.83  E-value=0.29  Score=41.07  Aligned_cols=60  Identities=18%  Similarity=0.113  Sum_probs=40.7

Q ss_pred             cCCcceeEEEEEEEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC
Q 027303           39 SLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  114 (225)
Q Consensus        39 ~~~~~h~~v~v~i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~  114 (225)
                      +.|+.+-+-+++++...+  .|||.|...+      .|-+| ||.+.+||+         ..++..|.|.+-+|..-.
T Consensus        39 ~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~------~fkLP-Gg~l~~gE~---------e~~gLkrkL~~~l~~~~~  100 (188)
T PF13869_consen   39 KEGMRRSVEGVLLVHEHGHPHVLLLQIGNT------FFKLP-GGRLRPGED---------EIEGLKRKLTEKLSPEDG  100 (188)
T ss_dssp             HHSSEEEEEEEEEEEETTEEEEEEEEETTT------EEE-S-EEE--TT-----------HHHHHHHHHHHHHB-SSS
T ss_pred             HhCCceEEEEEEEEecCCCcEEEEEeccCc------cccCC-ccEeCCCCC---------hhHHHHHHHHHHcCCCcC
Confidence            467666666777777665  5777775432      47788 999999999         699999999999998753

...

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=91.23  E-value=0.66  Score=41.14  Aligned_cols=33  Identities=24%  Similarity=0.215  Sum_probs=23.8

Q ss_pred             eeEEEEE-EEeCCCeEEEeeecCCCCCCCCCeeec
Q 027303           44 HRAFSVF-LFNSKYELLLQQRSGTKVTFPLVWTNT   77 (225)
Q Consensus        44 h~~v~v~-i~d~~g~vLL~rRs~~k~~~pg~W~~p   77 (225)
                      +....++ +.+.+|++|++||... ..+.|+|+||
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~r~~~-~~~~gl~~~p  259 (275)
T TIGR01084       226 ERTTYFLVLQNYDGEVLLEQRPEK-GLWGGLYCFP  259 (275)
T ss_pred             eEEEEEEEEEeCCCeEEEEeCCCC-chhhccccCC
Confidence            3443444 4556789999999754 5789999999

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=86.09  E-value=1.6  Score=39.21  Aligned_cols=85  Identities=16%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             cccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCC
Q 027303           78 CCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPN  157 (225)
Q Consensus        78 ~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~  157 (225)
                      +||.++..-|         +.+-|..|+.||.|.++.   +++|.++.+|  ......  + ..-.++|.+..+......
T Consensus        84 c~g~idke~s---------~~eia~eev~eecgy~v~---~d~l~hv~~~--~~g~~~--s-~sa~~l~y~ei~es~kis  146 (405)
T KOG4432|consen   84 CAGLIDKELS---------PREIASEEVAEECGYRVD---PDDLIHVITF--VVGAHQ--S-GSAQHLYYAEIDESMKIS  146 (405)
T ss_pred             eccccccccC---------HHHHhHHHHHHHhCCcCC---hhHceEEEEE--Eecccc--C-ccchheeeeecchhhccc
Confidence            3788888877         899999999999999987   6677776554  332211  1 112245555544333322


Q ss_pred             c-----cccccEEEeCHHHHHHHHHhc
Q 027303          158 P-----DEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       158 ~-----~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +     .++--.-=+++++.+.++..+
T Consensus       147 ~gggv~~~~~~~~~~a~e~ar~~i~t~  173 (405)
T KOG4432|consen  147 EGGGVITKVYYPVNVAREIARPAIGTH  173 (405)
T ss_pred             cCCceeeEEEEeehhhHHHHHHhhccC
Confidence            1     223333345666777776654

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=85.51  E-value=4.4  Score=35.52  Aligned_cols=106  Identities=23%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             EEEeeecCCCCCCCCCeeeccccCC-CCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCC
Q 027303           58 LLLQQRSGTKVTFPLVWTNTCCSHP-LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK  136 (225)
Q Consensus        58 vLL~rRs~~k~~~pg~W~~p~gG~v-e~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~  136 (225)
                      +||++|.-++   -+.|-|| -+.. +.+++         ...+|.|.|+.-.|=.....-. +-.++++..++.|....
T Consensus       141 yLLV~~k~g~---~s~w~fP-~~~~s~~~~~---------lr~~ae~~Lk~~~ge~~~t~fv-gnaP~g~~~~q~pr~~~  206 (263)
T KOG4548|consen  141 YLLVKRKFGK---SSVWIFP-NRQFSSSEKT---------LRGHAERDLKVLSGENKSTWFV-GNAPFGHTPLQSPREMT  206 (263)
T ss_pred             EEEEeeccCc---cceeeCC-CcccCCccch---------HHHHHHHHHHHHhcchhhhhee-ccCccccccccCccccc
Confidence            5666654333   3689999 5666 77888         7999999999888866543211 11234444444432111


Q ss_pred             CcceEEEEEEEEec---CccccCCccccccEEEeCHHHHHHHHHh
Q 027303          137 WGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       137 ~~e~~~~~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      .-...-.++|+...   .+. .....-..++.|++.++|.+.+..
T Consensus       207 ~e~~~~sk~ff~k~~lv~~~-~~kn~n~edfvWvTkdel~e~l~~  250 (263)
T KOG4548|consen  207 TEEPVSSKVFFFKASLVANS-NQKNQNKEDFVWVTKDELGEKLPK  250 (263)
T ss_pred             ccccccceeEEeeeeecccc-chhcccccceEEechHHHhhhcch
Confidence            10000012232221   111 112233456999999999887544

>PRK13910 DNA glycosylase MutY; Provisional

Probab=82.66  E-value=2  Score=38.40  Aligned_cols=29  Identities=3%  Similarity=0.058  Sum_probs=21.3

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeec
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT   77 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p   77 (225)
                      ...+++.+ +|++||+||.  +..|.|+|+||
T Consensus       188 ~~~~~~~~-~~~~ll~kr~--~~l~~gl~~fP  216 (289)
T PRK13910        188 RYLGVVIQ-NNQIALEKIE--QKLYLGMHHFP  216 (289)
T ss_pred             EEEEEEEE-CCEEEEEECC--CchhcccccCC
Confidence            33334444 5799999985  45899999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
2icj_A	233	The Crystal Structure Of Human Isopentenyl Diphopha		2e-61
2dho_A	235	Crystal Structure Of Human Ipp Isomerase I In Space		3e-61
2i6k_A	235	Crystal Structure Of Human Type I Ipp Isomerase Com		8e-61
2pny_A	246	Structure Of Human Isopentenyl-Diphosphate Delta-Is		2e-49
1x84_A	189	Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of		2e-11
1nfs_A	183	Structure And Mechanism Of Action Of Isopentenylpyr		2e-11
1hzt_A	190	Crystal Structure Of Metal-Free Isopentenyl Diphosp		2e-11
1x83_A	189	Y104f Ipp Isomerase Reacted With (S)-Bromohydrine O		3e-11
2g73_A	183	Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp		3e-11
1r67_A	190	Y104a Mutant Of E.coli Ipp Isomerase Length = 190		4e-11
1i9a_A	182	Structural Studies Of Cholesterol Biosynthesis: Mev		4e-11
3hyq_A	184	Crystal Structure Of Isopentenyl-Diphosphate Delta-		5e-11
1hx3_A	190	Crystal Structure Of E.Coli Isopentenyl Diphosphate		2e-10
1q54_A	183	Structure And Mechanism Of Action Of Isopentenylpyr		2e-10

>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate Isomerase Length = 233

Iteration: 1
 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 161/212 (75%), Gaps = 5/212 (2%)
Query: 13  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
           CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP 
Sbjct: 27  CILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 85
Query: 73  VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
            +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA 
Sbjct: 86  CFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQ 145
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
           SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF
Sbjct: 146 SDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWF 203
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           +++   FLFKWWD+L    LN+ +D + I+++
Sbjct: 204 KIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 233

>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group P212121 Length = 235

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 160/212 (75%), Gaps = 5/212 (2%)
Query: 13  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
           CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP 
Sbjct: 29  CILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 87
Query: 73  VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
            +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA 
Sbjct: 88  CFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQ 147
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
           SDG WGEHE+DY+L +  +V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF
Sbjct: 148 SDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWF 205
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           +++   FLFKWWD+L    LN+ +D + I+++
Sbjct: 206 KIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 235

>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed With A Substrate Analog Length = 235

Iteration: 1
 Score =  229 bits (584), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 160/213 (75%), Gaps = 5/213 (2%)
Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           + CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct: 27  EXCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITF 85
Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           P  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YK
Sbjct: 86  PGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYK 145
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           A SDG WGEHE+DY+L +  +V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++P
Sbjct: 146 AQSDGIWGEHEIDYILLVRXNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITP 203
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHK 223
           WF+++   FLFKWWD+L    LN+ +D + I++
Sbjct: 204 WFKIIAATFLFKWWDNLNH--LNQFVDHEKIYR 234

>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase 2 Length = 246

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/211 (47%), Positives = 146/211 (69%), Gaps = 5/211 (2%)
Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
           I+VDEND+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  
Sbjct: 41  IVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGY 99
Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
           +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA S
Sbjct: 100 FTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKS 159
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
           D  WGEHE+ YLL + ++V++NP+P E     Y+++E+L ELL +   GE  +K++PW R
Sbjct: 160 DRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLR 217
Query: 194 LVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            + + FL++WW HL+  T    +++  IH++
Sbjct: 218 TIAERFLYRWWPHLDDVT--PFVELHKIHRV 246

>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp Length = 189

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
           IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +P V
Sbjct: 7   ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
           WTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R  Y+A  
Sbjct: 62  WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YRATD 108
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
                E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SPW  
Sbjct: 109 PSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
           +   N
Sbjct: 164 MQATN 168

>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of Isopentenylpyrophosphate-dimethylallylpyrophosphate Isomerase: Complex With Nipp Length = 183

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
           IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +P V
Sbjct: 7   ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
           WTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R  Y+A  
Sbjct: 62  WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YRATD 108
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
                E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SPW  
Sbjct: 109 PSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
           +   N
Sbjct: 164 MQATN 168

>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl Diphosphate:dimethylallyl Diphosphate Isomerase Length = 190

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
           IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +P V
Sbjct: 7   ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
           WTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R  Y+A  
Sbjct: 62  WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YRATD 108
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
                E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SPW  
Sbjct: 109 PSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
           +   N
Sbjct: 164 MQATN 168

>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
           IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +P V
Sbjct: 7   ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
           WTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R     PS
Sbjct: 62  WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRFRATDPS 110
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
                E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SPW  
Sbjct: 111 GIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
           +   N
Sbjct: 164 MQATN 168

>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp Length = 183

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
           IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +P V
Sbjct: 7   ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
           WTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R     PS
Sbjct: 62  WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRFRATDPS 110
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
                E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SPW  
Sbjct: 111 GIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
           +   N
Sbjct: 164 MQATN 168

>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase Length = 190

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
           IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +P V
Sbjct: 7   ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
           WTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R     PS
Sbjct: 62  WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRARATDPS 110
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
                E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SPW  
Sbjct: 111 GIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
           +   N
Sbjct: 164 MQATN 168

>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase And Isopentenyl Diphosphate Isomerase Length = 182

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 23/178 (12%)
Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
           IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +P V
Sbjct: 7   ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
           WTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R  Y+A  
Sbjct: 62  WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YRATD 108
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW 191
                E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SPW
Sbjct: 109 PSGIVENEVCPVFAARTTSALQINDDEVXDYQWCD---LADVLHGIDATP--WAFSPW 161

>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate Delta-Isomerase From Salmonella Entericase Length = 184

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 29/186 (15%)
Query: 9   TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKV 68
           T +  +L+DE D+  G   KY  H +        LH AFS +LFN   +LL+ +RS +K 
Sbjct: 5   TEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSKK 59
Query: 69  TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL-GRI 127
            +P VWTN+ C HP  ++ E  EE       A  R+   ELG     V + + TP+    
Sbjct: 60  AWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELG-----VEITDLTPVYPHF 105
Query: 128 LYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEYKYVNREQL-KELLRKADAGEEG 185
            Y+A       E+E+   +F  R  SV   N +EV +Y++   + + K LL    A    
Sbjct: 106 SYRATDPNGIVENEV-CPVFAARATSVLQVNSEEVXDYQWSEFKSVWKSLLATPWA---- 160
Query: 186 LKLSPW 191
              SPW
Sbjct: 161 --FSPW 164

>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl Diphosphate:dimethylallyl Diphosphate Isomerase Length = 190

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +
Sbjct: 4   EHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAW 58
Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           P VWTN+   HP   ES           +A  R+   ELG+  E  P +   P  R  Y+
Sbjct: 59  PGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YR 105
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           A       E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SP
Sbjct: 106 ATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSP 160
Query: 191 WFRLVVDN 198
           W  +   N
Sbjct: 161 WMVMQATN 168

>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of Isopentenylpyrophosphate-Dimethylallylpyrophosphate Isomerase: Complex With The Bromohydrine Of Ipp Length = 183

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +
Sbjct: 4   EHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAW 58
Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           P VWTN+   HP   ES           +A  R+   ELG+  E  P +   P  R  Y+
Sbjct: 59  PGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YR 105
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           A       E+E+  +       ++  N DEV +Y++ +   L ++L   DA       SP
Sbjct: 106 ATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSP 160
Query: 191 WFRLVVDN 198
           W  +   N
Sbjct: 161 WMVMQATN 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	1e-80
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	4e-79
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	6e-68
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	6e-55
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	6e-48
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	5e-13
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	2e-04

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Length = 235

 Score =  240 bits (613), Expect = 1e-80
 Identities = 121/214 (56%), Positives = 160/214 (74%), Gaps = 5/214 (2%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           + CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TF
Sbjct: 27  EMCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITF 85

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           P  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YK
Sbjct: 86  PGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYK 145

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           A SDG WGEHE+DY+L +  +V++NP+P+E+  Y YV++E+LKELL+KA +GE   K++P
Sbjct: 146 AQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKAASGEI--KITP 203

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           WF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct: 204 WFKIIAATFLFKWWDNLN--HLNQFVDHEKIYRM 235

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} Length = 246

 Score =  236 bits (603), Expect = 4e-79
 Identities = 100/214 (46%), Positives = 146/214 (68%), Gaps = 5/214 (2%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           +  I+VDEND+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTF
Sbjct: 38  EMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTF 96

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           P  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +K
Sbjct: 97  PGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHK 156

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           A SD  WGEHE+ YLL + ++V++NP+P E     Y+++E+L ELL +   GE   K++P
Sbjct: 157 AKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGEV--KVTP 214

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
           W R + + FL++WW HL+   +   +++  IH++
Sbjct: 215 WLRTIAERFLYRWWPHLDD--VTPFVELHKIHRV 246

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score =  206 bits (525), Expect = 6e-68
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 28/213 (13%)

Query: 11  DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
           +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +
Sbjct: 4   EHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAW 58

Query: 71  PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
           P VWTN+ C HP   ES           +A  R+   ELG+  E  P +         Y+
Sbjct: 59  PGVWTNSVCGHPQLGESNE---------DAVIRRCRYELGV--EITPPESI--YPDFRYR 105

Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
           A       E+E+  +       ++  N DEV +Y++ +   +   +            SP
Sbjct: 106 ATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGID-----ATPWAFSP 160

Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEV-IDMKTIH 222
           W  +   N   +    L      ++ ++    H
Sbjct: 161 WMVMQATN--REARKRLS--AFTQLKLEHHHHH 189

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score =  172 bits (437), Expect = 6e-55
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 28/187 (14%)

Query: 13  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
             LV+E D VVG   + +  L           R  + FL NS+ +L + +RS +K  FP 
Sbjct: 9   LDLVNERDEVVGQILRTDPAL------RWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPN 62

Query: 73  VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
               +        E+            A +R+  +EL +  + +              +P
Sbjct: 63  ALDVSVGGAVQSGET---------YEEAFRREAREELNVEIDALSWRPLA------SFSP 107

Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
                      Y L    D +   NP++++  +++  E L   +   +A           
Sbjct: 108 FQTTLSSFMCVYEL--RSDATPIFNPNDISGGEWLTPEHLLARIAAGEA-----AKGDLA 160

Query: 193 RLVVDNF 199
            LV   +
Sbjct: 161 ELVRRCY 167

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score =  154 bits (392), Expect = 6e-48
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 26/190 (13%)

Query: 13  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
             +V+E + V+   ++          +  L HRA  + + +   ++L+Q+R+ TK   P 
Sbjct: 12  VDIVNEENEVIAQASREQMR------AQCLRHRATYIVVHDGMGKILVQRRTETKDFLPG 65

Query: 73  VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
           +   T        E          +  +A+R+  +ELGI         F   G+  ++  
Sbjct: 66  MLDATAGGVVQADEQ---------LLESARREAEEELGI-----AGVPFAEHGQFYFEDK 111

Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
           +           L   V         DEV+E  ++  E++     +         L+ W 
Sbjct: 112 N-----CRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA-LALWM 165

Query: 193 RLVVDNFLFK 202
           +    N   +
Sbjct: 166 KRNAKNEAVE 175

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 63.7 bits (155), Expect = 5e-13
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 42  LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAA 101
           +  R     L  +    LL + +  +  FP  W  +          E IEE       A 
Sbjct: 25  MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVE---PGERIEE-------AL 74

Query: 102 QRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN-PNPDE 160
           +R++ +ELG       +  +T    I  K  +DG+  E  + YL+F     + +    DE
Sbjct: 75  RREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDE 134

Query: 161 VAEYKYVNREQLKEL 175
             +Y +V  E+L   
Sbjct: 135 FQDYAWVKPEELALY 149

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 60.4 bits (146), Expect = 4e-11
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 15  LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLF-----NSKYELLLQQRSGTKVT 69
              E  RV     +    L+++        RA+ V L       +   L + +RS  K  
Sbjct: 87  PRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSV 146

Query: 70  FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
            P    N          S         +R    ++  +E  +        +  P+G I Y
Sbjct: 147 APGKLDNMVAGGQPADLS---------LRQNLIKECAEEADLPEAL--ARQAIPVGAITY 195

Query: 130 KAPSD-GKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKL 188
              S  G   +    Y L +  D   +    E+A++      ++ E +R  +        
Sbjct: 196 CMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTE------AF 249

Query: 189 SPWFRLVVDNFLF 201
                L V +F  
Sbjct: 250 KFNVNLTVIDFAI 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 38/255 (14%), Positives = 68/255 (26%), Gaps = 62/255 (24%)

Query: 6   VIDTFD-RC-ILV---DEN--DRVVGHENKY-----NCHLMEKIESLNLLHRAFSVFLFN 53
             + F+  C IL+    +   D +      +     +   +   E  +L       +L  
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----LLKYLDC 313

Query: 54  SKYELLLQQRSGTKVTFPLV--------------WTNTCCSHPLYRESELIEENALGVRN 99
              +L  +  +      P                W N    H    +   I E++L V  
Sbjct: 314 RPQDLPREVLTTN----PRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLE 367

Query: 100 AA-QRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS----V 154
            A  RK+ D L +      +     L  I         W +     ++ +V  +     V
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTIL-LSLI---------WFDVIKSDVMVVVNKLHKYSLV 417

Query: 155 NPNPDEVAEYKY-------VNREQLKELLRKA-DAGEEGLKLSPW--FRLVVDNFLFKWW 204
              P E             V  E    L R   D                 +D + +   
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 205 -DHLEKGTLNEVIDM 218
             HL+     E + +
Sbjct: 478 GHHLKNIEHPERMTL 492

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 98  RNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPN 157
              A R   +E GI A  +     T +     +     +     + Y L  V+D  V   
Sbjct: 57  LETALRATQEEAGIEAGQL-----TIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIR 111

Query: 158 P-DEVAEYKYVNREQLKELL 176
              E   Y+++  E+  +L 
Sbjct: 112 LSHEHQAYRWLGLEEACQLA 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	100.0
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	100.0
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.97
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.96
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.95
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.94
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.86
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.84
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.83
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.82
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.82
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.8
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.8
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.8
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.79
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.79
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.79
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.79
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.79
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.78
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.78
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.78
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.77
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.77
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.77
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.76
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.76
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.76
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.76
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.75
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.75
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.75
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.74
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.74
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.74
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.73
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.73
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.72
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.72
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.72
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.72
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.72
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.72
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.71
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.7
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.7
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.7
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.69
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.69
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.69
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.69
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.68
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.67
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.66
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.66
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.66
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.66
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.66
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.66
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.66
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.65
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.65
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.65
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.65
3f13_A	163	Putative nudix hydrolase family member; structural	99.64
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.58
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.57
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.56
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.55
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.55
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.5
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.5
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.3
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.28
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.71
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.63
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.48

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=100.00  E-value=2.3e-41  Score=292.01  Aligned_cols=206  Identities=45%  Similarity=0.844  Sum_probs=178.9

Q ss_pred             CccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCC--
Q 027303            8 DTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYR--   85 (225)
Q Consensus         8 ~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~g--   85 (225)
                      -++|+|++||++|+++|..+|++||.+.++ .++.+|++++++++|++|++||+||+..|..+||.|++|+|||+++|  
T Consensus        35 ~~~E~~~lvd~~~~~iG~~~r~~~h~~~~~-~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~  113 (246)
T 2pny_A           35 RLEEMLIVVDENDKVIGADTKRNCHLNENI-EKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPA  113 (246)
T ss_dssp             HTTCEEEEECTTCCEEEEEEHHHHTBHHHH-TTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHH
T ss_pred             hccceEEEEcCCCCEEEEEEhHHhcccccc-CCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCc
Confidence            368999999999999999999999976555 36889999999999989999999999999999999999988999999  


Q ss_pred             ----CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCcccc
Q 027303           86 ----ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV  161 (225)
Q Consensus        86 ----Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev  161 (225)
                          |++      .++++||+||++||||+.+..++++++.+++.+.|..+..++|.+++++++|++..+..+.++++|+
T Consensus       114 E~~~Et~------~~~~eAA~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev  187 (246)
T 2pny_A          114 ELEEKDA------IGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSET  187 (246)
T ss_dssp             HHCCGGG------HHHHHHHHHHHHHHHCCCTTTCCGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECCCCCCCCTTTE
T ss_pred             ccccccc------hhHHHHHHHHHHHHHCCCccccCccccEEEEEEEEEecCCCceeeeEEEEEEEEEECCCCCCChHHe
Confidence                772      0128999999999999998755555678899988887766677778888988887766777888999


Q ss_pred             ccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHhhhcccccccccCcCceeec
Q 027303          162 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL  224 (225)
Q Consensus       162 ~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (225)
                      .+++|++++++.+++...+.  .|..|+||++.++++||..||+++..  |+++.|+++||++
T Consensus       188 ~~~~wv~~eel~~~l~~~~~--~~~~ftp~~~~i~~~~l~~ww~~~~~--~~~~~~~~~~~~~  246 (246)
T 2pny_A          188 KSILYLSQEELWELLEREAR--GEVKVTPWLRTIAERFLYRWWPHLDD--VTPFVELHKIHRV  246 (246)
T ss_dssp             EEEEEECHHHHHHHHHHHHH--TSSCBCHHHHHHHHHTHHHHGGGTTC--CGGGCCSSCCEEC
T ss_pred             eEEEEEeHHHHHHHHHhccC--CCceECHhHHHHHHHHHHHHHHhhhh--hhhccCccceeeC
Confidence            99999999999999887310  14589999999999999999999998  9999999999986

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=100.00  E-value=7.6e-41  Score=286.91  Aligned_cols=207  Identities=55%  Similarity=0.990  Sum_probs=178.9

Q ss_pred             cCccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCC-
Q 027303            7 IDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYR-   85 (225)
Q Consensus         7 ~~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~g-   85 (225)
                      ..++|+|++||++|+++|..+|++||.+.++ .++.+|+++++++++++|++||+||+..|..+||.|++|+|||+++| 
T Consensus        23 ~~~~E~~~lvd~~~~~~G~~~r~~~h~~~~~-~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge  101 (235)
T 2dho_A           23 QLLAEMCILIDENDNKIGAETKKNCHLNENI-EKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNP  101 (235)
T ss_dssp             CSSCCEEEEECTTCCEEEEEEHHHHTBHHHH-TTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSH
T ss_pred             hhcCcEEEEEcCCCCEEEEEEhHHhcccccc-CCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCC
Confidence            3578999999999999999999999976544 36889999999999989999999999999999999999988999999 


Q ss_pred             -----CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccc
Q 027303           86 -----ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDE  160 (225)
Q Consensus        86 -----Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~E  160 (225)
                           |++      .++++||+||++||||+.+..++++++.+++++.|..+..++|.+++++++|++..+..+.++++|
T Consensus       102 ~E~~~E~~------~~~~~Aa~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~E  175 (235)
T 2dho_A          102 AELEESDA------LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNE  175 (235)
T ss_dssp             HHHCCGGG------HHHHHHHHHHHHHHHCCCGGGSCGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECCCCCCCCTTT
T ss_pred             cccccccc------hhHHHHHHHHHHHHHCCCccccChhhcEEEEEEEEeccCCCccceeEEEEEEEEEECCCCcCChHH
Confidence                 661      113899999999999999765555567889998888776667777888898988776677788899


Q ss_pred             cccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHhhhcccccccccCcCceeec
Q 027303          161 VAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL  224 (225)
Q Consensus       161 v~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (225)
                      +.+++|++++++.+++...+.  .|..|+||++.++++||..||+++..  |+.+.|+++||++
T Consensus       176 v~~~~wv~~~el~~~l~~~~~--~~~~ftp~~~~i~~~~L~~ww~~~~~--~~~~~~~~~~~~~  235 (235)
T 2dho_A          176 IKSYCYVSKEELKELLKKAAS--GEIKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM  235 (235)
T ss_dssp             EEEEEEECHHHHHHHHHHHHT--TSSCBCHHHHHHHHHTHHHHHTTTTC--CGGGCCSSCEEEC
T ss_pred             EEEEEEEcHHHHHHHHhhccC--CCcEECHhHHHHHHHHHHHHHhhcch--hhhccCccceeeC
Confidence            999999999999999987320  14589999999999999999999997  9999999999986

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.97  E-value=3e-30  Score=212.14  Aligned_cols=171  Identities=27%  Similarity=0.413  Sum_probs=113.8

Q ss_pred             ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCCh
Q 027303            9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE   88 (225)
Q Consensus         9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~   88 (225)
                      ++|+|++||++|+++|..+|..+|.     ..+.+|+++++++++.+|++||++|+..+..+||.|++|+||++++||+ 
T Consensus         2 ~~E~~~v~d~~~~~~g~~~r~~~~~-----~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt-   75 (190)
T 1hzt_A            2 QTEHVILLNAQGVPTGTLEKYAAHT-----ADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES-   75 (190)
T ss_dssp             ----------------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC-
T ss_pred             CceEEEEECCCCCEeeeEEHhhhcc-----cCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCC-
Confidence            4699999999999999999999883     3678999999999998899999999877778899999944999999999 


Q ss_pred             hhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeC
Q 027303           89 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN  168 (225)
Q Consensus        89 ~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~  168 (225)
                              +++||+||++||||+.+..+.    .+++.+.|.....++...+.+.++|.+..+..+.++++|+.+++|++
T Consensus        76 --------~~~aa~REl~EEtGl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~  143 (190)
T 1hzt_A           76 --------NEDAVIRRCRYELGVEITPPE----SIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD  143 (190)
T ss_dssp             --------HHHHHHHHHHHHHCCCBSCCE----EEETTCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEEC
T ss_pred             --------HHHHHHHHHHHHHCCCchhhh----eeeeeEEEEeeCCCCCcceEEEEEEEEecCCCCcCCccceeeEEEec
Confidence                    899999999999999987320    44555555433222222345566777766556666778999999999


Q ss_pred             HHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          169 REQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       169 ~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      ++++.+++..+     +..++|+++.++++|+..
T Consensus       144 ~~el~~~~~~~-----~~~~~p~~~~~~~~~~~~  172 (190)
T 1hzt_A          144 LADVLHGIDAT-----PWAFSPWMVMQATNREAR  172 (190)
T ss_dssp             HHHHHHHHHHC-----GGGBCHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHcC-----hhhcCchHHHHHHHHHHH
Confidence            99999999885     458999999999999643

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.96  E-value=5.5e-28  Score=213.80  Aligned_cols=171  Identities=13%  Similarity=0.064  Sum_probs=145.3

Q ss_pred             CccceEEEEcCCC-CEeeeeecccccchhhcccCCcceeEEEEEEEeCCC---eEEEeeecCCCCCCCCCeeeccccCCC
Q 027303            8 DTFDRCILVDEND-RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPL   83 (225)
Q Consensus         8 ~~~E~~~~~d~~~-~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g---~vLL~rRs~~k~~~pg~W~~p~gG~ve   83 (225)
                      =++|++++||++| ++++..+|..++.      .|++|++|++.+++.++   ++||+||+..|..|||+|+..+|||++
T Consensus        87 wr~E~~~V~~~~~~~~~~~~eR~~~~~------~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~  160 (300)
T 3dup_A           87 PRGELYRVNQSWGEPTLMLLDRAVVPT------FGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQP  160 (300)
T ss_dssp             CCSCEEEECSSTTSCCCEEEEGGGTGG------GTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECC
T ss_pred             cccccEEeecCCCCeeeEEEEhhhccc------cceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCC
Confidence            4789999999997 8999999998885      79999999999999887   999999999999999999988899999


Q ss_pred             CCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCcccc
Q 027303           84 YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEV  161 (225)
Q Consensus        84 ~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev  161 (225)
                      +||+         +.+||+||+.||+|+.+..+.  .+.+.+.+.|......+ .+++..|+|.+..+  ..+.++++|+
T Consensus       161 ~GEs---------~~eaA~REl~EElGI~~~~~~--~l~~~g~i~y~~~~~~G-~~~E~~~vy~~~l~~~~~p~~~~~EV  228 (300)
T 3dup_A          161 ADLS---------LRQNLIKECAEEADLPEALAR--QAIPVGAITYCMESPAG-IKPDTLFLYDLALPEDFRPHNTDGEM  228 (300)
T ss_dssp             TTSC---------HHHHHHHHHHHHHCCCHHHHT--TCEEEEEEEEEEEETTE-EEEEEEEEEEEECCTTCCCCCTTSSE
T ss_pred             CCCC---------HHHHHHHHHHHHhCCChhhhh--hccccceEEEEEecCCC-eEEEEEEEEEEEecCCCcCCCCchHh
Confidence            9999         799999999999999875322  35667777776654444 34677788876653  3456788999


Q ss_pred             ccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          162 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       162 ~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      ++++|++++|+.+++.+      |+.|+|++..++-+||..
T Consensus       229 ~~~~~v~~~El~~~l~~------pg~F~p~~~lV~ldfl~R  263 (300)
T 3dup_A          229 ADFMLWPAAKVVEAVRT------TEAFKFNVNLTVIDFAIR  263 (300)
T ss_dssp             EEEEEEEHHHHHHHHHH------CCCBCTTHHHHHHHHHHH
T ss_pred             heEEEECHHHHHHHHhc------CCCcCccHHHHHHHHHHH
Confidence            99999999999999988      248999999999999754

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.95  E-value=2.4e-27  Score=192.34  Aligned_cols=162  Identities=19%  Similarity=0.241  Sum_probs=130.7

Q ss_pred             CccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCC
Q 027303            8 DTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES   87 (225)
Q Consensus         8 ~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs   87 (225)
                      .++|+|++||++|+++|..+|..++.      .+..|+++++++++.+|++||++|+..+..+||.|++|+||++++||+
T Consensus         7 ~~~E~~~i~d~~~~~~g~~~r~~~~~------~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~   80 (180)
T 2fkb_A            7 ASTEWVDIVNEENEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ   80 (180)
T ss_dssp             -CCCEEEEECTTSCEEEEEEHHHHHH------HTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCC
T ss_pred             CCCeeEEEECCCCCEeeEEEHHHhhc------cCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCC
Confidence            47999999999999999999987653      678899999999998899999999877777899999955999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEe
Q 027303           88 ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV  167 (225)
Q Consensus        88 ~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv  167 (225)
                               +.+||+||++||||+.+..     +..++.+.+....     .+...++|.+.....+.++++|+.+++|+
T Consensus        81 ---------~~~aa~REl~EEtGl~~~~-----~~~l~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~W~  141 (180)
T 2fkb_A           81 ---------LLESARREAEEELGIAGVP-----FAEHGQFYFEDKN-----CRVWGALFSCVSHGPFALQEDEVSEVCWL  141 (180)
T ss_dssp             ---------HHHHHHHHHHHHHCCBSCC-----CEEEEEEEEEETT-----EEEEEEEEEEECCCCCCCCTTTEEEEEEE
T ss_pred             ---------HHHHHHHHHHHHHCCCccc-----eEEEEEEEecCCC-----ceEEEEEEEEecCCCcCCChhHhheEEEe
Confidence                     8999999999999998763     3456666554321     14455677776555566677899999999


Q ss_pred             CHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHH
Q 027303          168 NREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW  203 (225)
Q Consensus       168 ~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~  203 (225)
                      +++++.+++.         .+.|....++..|+...
T Consensus       142 ~~~el~~~~~---------~~~~~~~~~l~~~~~~~  168 (180)
T 2fkb_A          142 TPEEITARCD---------EFTPDSLKALALWMKRN  168 (180)
T ss_dssp             CHHHHHTTGG---------GBCHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHH---------HhCCcHHHHHHHHHHhh
Confidence            9999998754         27788888888886543

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.94  E-value=3e-26  Score=184.41  Aligned_cols=145  Identities=21%  Similarity=0.263  Sum_probs=117.3

Q ss_pred             cCccceEEEEcCCCCEeeeeecccc---cchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCee-eccccCC
Q 027303            7 IDTFDRCILVDENDRVVGHENKYNC---HLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWT-NTCCSHP   82 (225)
Q Consensus         7 ~~~~E~~~~~d~~~~~~g~~~r~~~---~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~-~p~gG~v   82 (225)
                      ++++|+|++||.+|+++|..+|.++   |.      .   |+++++++++.+|++||+||+..+..+||.|+ +| ||++
T Consensus         3 ~~~~E~~~~~d~~~~~~g~~~r~~~~l~~~------~---~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~P-gG~v   72 (171)
T 1q27_A            3 GVSDERLDLVNERDEVVGQILRTDPALRWE------R---VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSV-GGAV   72 (171)
T ss_dssp             CCCSSEEEEESSSSCEEEEEESSCTTSCTT------S---CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSE-EEEC
T ss_pred             cccceeeeeecCCCCEeceEEhhhhccccc------c---ceEEEEEEECCCCeEEEEEecCCCCCCCCcccccc-Cccc
Confidence            3579999999999999999999887   63      2   89999999998899999999877777899999 88 9999


Q ss_pred             CCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEE-EEcCCCCCCcceEEEEEEEEecCccccCCcccc
Q 027303           83 LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL-YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV  161 (225)
Q Consensus        83 e~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~-y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev  161 (225)
                      ++||+         +.+||+||++||||+.+...   ++.+++.+. |..+  .    +...++|.+..+..+.++++|+
T Consensus        73 e~gEs---------~~~aa~REl~EEtGl~~~~~---~l~~~~~~~~~~~~--~----~~~~~~f~~~~~~~~~~~~~E~  134 (171)
T 1q27_A           73 QSGET---------YEEAFRREAREELNVEIDAL---SWRPLASFSPFQTT--L----SSFMCVYELRSDATPIFNPNDI  134 (171)
T ss_dssp             SSSSC---------HHHHHHHHHHHHHSCTTSSS---CEEEEEEECSSSSC--C----SSEEEEEEEECCCCCCSCTTTC
T ss_pred             cCCCC---------HHHHHHHHHHHHHCCccccc---ceEEEEEEeccCCC--C----ccEEEEEEEEECCccccCchhh
Confidence            99999         79999999999999998742   345565543 2221  1    1255667666555556677899


Q ss_pred             ccEEEeCHHHHHHHHHhc
Q 027303          162 AEYKYVNREQLKELLRKA  179 (225)
Q Consensus       162 ~~~~Wv~~eel~~~~~~~  179 (225)
                      .+++|++++++.+++...
T Consensus       135 ~~~~W~~~~el~~~~~~~  152 (171)
T 1q27_A          135 SGGEWLTPEHLLARIAAG  152 (171)
T ss_dssp             SCCEEECHHHHHHHHHHH
T ss_pred             heEEEecHHHHHHHHhcC
Confidence            999999999999987775

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.86  E-value=1.6e-20  Score=148.12  Aligned_cols=131  Identities=20%  Similarity=0.211  Sum_probs=100.6

Q ss_pred             CcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303           41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  120 (225)
Q Consensus        41 ~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~  120 (225)
                      ...+.++++++++.+|++||++|+..+..++|.|.+| ||++++||+         +.+||+||++||||+.+...    
T Consensus         5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~REl~EE~Gl~~~~~----   70 (153)
T 3grn_A            5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLP-GGKVNPDES---------LKEGVAREVWEETGITMVPG----   70 (153)
T ss_dssp             SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCCC----
T ss_pred             CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECc-eeecCCCCC---------HHHHHHhhhhhhhCcEeecc----
Confidence            4477888999999889999999987666789999999 999999999         89999999999999998743    


Q ss_pred             eeeeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcc-cChhHHHHHHH
Q 027303          121 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK-LSPWFRLVVDN  198 (225)
Q Consensus       121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~-~~p~~~~~~~~  198 (225)
                       ..++.+.+..+.     .+...++|.+.. .+.+.+ .+|..+++|++++++.++           . +.|.++.+++.
T Consensus        71 -~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~-----------~~~~~~~~~~l~~  132 (153)
T 3grn_A           71 -DIAGQVNFELTE-----KKVIAIVFDGGYVVADVKL-SYEHIEYSWVSLEKILGM-----------ETLPAYFRDFFER  132 (153)
T ss_dssp             -SEEEEEEEECSS-----CEEEEEEEEEEECCCCCCC-CTTEEEEEEECHHHHTTC-----------SSSCHHHHHHHHH
T ss_pred             -eEEEEEEEecCC-----ceEEEEEEEEEecCCcEec-CCCcceEEEEEHHHhhhc-----------ccchHHHHHHHHH
Confidence             345555544332     133445565553 333433 378899999999999764           4 88999999888


Q ss_pred             HHHHH
Q 027303          199 FLFKW  203 (225)
Q Consensus       199 ~l~~~  203 (225)
                      |+..-
T Consensus       133 l~~~~  137 (153)
T 3grn_A          133 FDREN  137 (153)
T ss_dssp             HHHHH
T ss_pred             Hhccc
Confidence            85543

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.84  E-value=1.7e-19  Score=142.25  Aligned_cols=122  Identities=25%  Similarity=0.295  Sum_probs=94.0

Q ss_pred             cCCcceeEEEEEEEeCCCeEEEeeecCC--CCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCC
Q 027303           39 SLNLLHRAFSVFLFNSKYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  116 (225)
Q Consensus        39 ~~~~~h~~v~v~i~d~~g~vLL~rRs~~--k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i  116 (225)
                      +.+..|.++++++++.+|++||++|+..  +..++|.|++| ||+++.||+         +.+||+||++||||+.+.. 
T Consensus         8 ~~~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-   76 (159)
T 1sjy_A            8 HVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIP-SGAVEDGEN---------PQDAAVREACEETGLRVRP-   76 (159)
T ss_dssp             CCCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECS-EEECCTTSC---------HHHHHHHHHHHHHSCCEEE-
T ss_pred             CCCeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECC-ccccCCCCC---------HHHHHHHHHHHHHCcccee-
Confidence            3567789999999988899999999752  44578999999 999999999         8999999999999999763 


Q ss_pred             CCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec-Ccc-ccC-CccccccEEEeCHHHHHHHHHhc
Q 027303          117 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVS-VNP-NPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       117 ~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~-~~~-~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                          +..++.+.+..+.  +  .+...++|.+.. ... +.+ +++|+.+++|++++++.+++..+
T Consensus        77 ----~~~l~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  134 (159)
T 1sjy_A           77 ----VKFLGAYLGRFPD--G--VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  134 (159)
T ss_dssp             ----EEEEEEEEEECTT--S--CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             ----eEEEEEEecccCC--C--ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence                3456655544322  1  245566776654 333 555 67889999999999999998875

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.83  E-value=1.1e-19  Score=141.84  Aligned_cols=123  Identities=20%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +.++++++++ +|++||+||.      .|.|.+| ||++++|||         +.+||+||++||||+.+..     +.+
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~------~g~W~~P-gG~ve~gEt---------~~~aa~RE~~EEtGl~~~~-----~~~   61 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTP------SNVWSFP-KGNIEPGEK---------PEETAVREVWEETGVKGEI-----LDY   61 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECT------TSCEECC-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EEE
T ss_pred             EEEEEEEEEE-CCEEEEEEeC------CCcEECC-eeEecCCCC---------HHHHHHHHHHHhcCceEEE-----eee
Confidence            4577777776 4899999875      2789999 999999999         8999999999999999763     344


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      ++.+.|..+..+... +..+++|.+.. ++.+.++ +|+.+++|++++++.+++           ..|..+.++++++.
T Consensus        62 l~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~l-----------~~~~~r~il~~a~~  127 (134)
T 3i7u_A           62 IGEIHYWYTLKGERI-FKTVKYYLMKYKEGEPRPS-WEVKDAKFFPIKEAKKLL-----------KYKGDKEIFEKALK  127 (134)
T ss_dssp             EEEEEEEEEETTEEE-EEEEEEEEEEEEEECCCCC-TTSSEEEEEEHHHHHHHB-----------CSHHHHHHHHHHHH
T ss_pred             eeeeeEEecCCCceE-EEEEEEEEEEEcCCcCcCC-hhheEEEEEEHHHHhhhc-----------CChHHHHHHHHHHH
Confidence            555544443322211 33345565554 3444444 689999999999998873           23555667776653

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.82  E-value=1.2e-19  Score=144.87  Aligned_cols=138  Identities=20%  Similarity=0.184  Sum_probs=86.5

Q ss_pred             cCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           39 SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        39 ~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      ..+..|+++.+++++.+|++||+||+..+..+||.|++| ||++++||+         +++||+||++||||+.+....+
T Consensus        22 ~~~~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~   91 (165)
T 3oga_A           22 SNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLILSDI   91 (165)
T ss_dssp             --CCEEEEEEEEEEEETTEEEEEEECC------CCEECC-CEECCTTCC---------HHHHHHHHHHHHHCSSCCEEEE
T ss_pred             CCCcceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccccce
Confidence            345678888888888889999999987777789999999 999999999         7999999999999999863221


Q ss_pred             CceeeeeEE-EEEcCCCCCCcce-EEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHH
Q 027303          119 DEFTPLGRI-LYKAPSDGKWGEH-ELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV  195 (225)
Q Consensus       119 ~~l~~l~~~-~y~~~~~~~~~e~-~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~  195 (225)
                      ..+.+...+ .+..+. ..+... .+.++|.+... ..+.. ++|+.+++|++++++.++           .+.|..+.+
T Consensus        92 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~-----------~~~~~~~~~  158 (165)
T 3oga_A           92 TPWTFRDDIRIKTYAD-GRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALY-----------DLNVATRHT  158 (165)
T ss_dssp             EEEEEEEEEEEEEC---CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGS-----------CBCHHHHHH
T ss_pred             eeeeeecceeeEecCC-CCceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhC-----------CCCHHHHHH
Confidence            111111111 122221 111111 12233444432 33333 478899999999999875           466766666


Q ss_pred             HHHH
Q 027303          196 VDNF  199 (225)
Q Consensus       196 ~~~~  199 (225)
                      ++..
T Consensus       159 l~~~  162 (165)
T 3oga_A          159 LALK  162 (165)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6543

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.82  E-value=1.2e-19  Score=141.00  Aligned_cols=130  Identities=19%  Similarity=0.136  Sum_probs=95.2

Q ss_pred             CcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303           41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  120 (225)
Q Consensus        41 ~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~  120 (225)
                      ...+.++++++++.+|++||+||+..+ .++|.|++| ||+++.||+         +.+||+||++||||+.+...   .
T Consensus         5 ~~~~~~~~~vi~~~~~~vLl~~r~~~~-~~~g~w~lP-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~---~   70 (144)
T 3r03_A            5 LPILLVTAAALIDPDGRVLLAQRPPGK-SLAGLWEFP-GGKLEPGET---------PEAALVRELAEELGVDTRAS---C   70 (144)
T ss_dssp             -CEEEEEEEEEBCTTSCEEEEECCTTS-SSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCBCCGG---G
T ss_pred             CceeEEEEEEEEcCCCEEEEEEeCCCC-CCCCcEECC-CcEecCCCC---------HHHHHHHHHHHHhCceeecc---c
Confidence            346778888888888999999998654 489999998 999999999         79999999999999998743   2


Q ss_pred             eeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          121 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      +..++.+.+....     .+...++|.+..... .++..|..+++|++++++.++           .+.+..+.+++.+.
T Consensus        71 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  133 (144)
T 3r03_A           71 LAPLAFASHSYDT-----FHLLMPLYACRSWRG-RATAREGQTLAWVRAERLREY-----------PMPPADLPLIPILQ  133 (144)
T ss_dssp             CEEEEEEEEECSS-----SEEEEEEEEECCCBS-CCCCCSSCEEEEECGGGGGGS-----------CCCTTTTTHHHHHH
T ss_pred             eEEEEeeeccCCC-----eEEEEEEEEEEecCC-ccCCCCcceEEEEeHHHhccC-----------CCCcchHHHHHHHh
Confidence            3344444444321     144456666654322 344678899999999999775           46676777777764


Q ss_pred             H
Q 027303          201 F  201 (225)
Q Consensus       201 ~  201 (225)
                      .
T Consensus       134 ~  134 (144)
T 3r03_A          134 D  134 (144)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.80  E-value=4.5e-19  Score=140.49  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=94.7

Q ss_pred             CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      ....+.++++++++.+|++||+||...+ .++|.|++| ||++++||+         +.+||+||+.||||+.+...   
T Consensus        25 ~~~~~~~~~~~i~~~~~~vLL~~r~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~---   90 (158)
T 3hhj_A           25 KSSLLIVVACALLDQDNRVLLTQRPEGK-SLAGLWEFP-GGKVEQGET---------PEASLIRELEEELGVHVQAD---   90 (158)
T ss_dssp             --CEEEEEEEEEBCTTSEEEEEECCCTT-SCCCCCBCC-EEECCTTCC---------HHHHHHHHHHHHHCCBCCGG---
T ss_pred             CCceEEEEEEEEEeCCCEEEEEEeCCCC-CCCCEEECC-ceeecCCCC---------HHHHHHHHHHHHhCcEeecc---
Confidence            3456778888888888999999998554 589999998 999999999         89999999999999998743   


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      .+..++.+.+....     .+...++|.+..... .++..|..+++|++++++.++           .+.+..+.+++.+
T Consensus        91 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~il~~~  153 (158)
T 3hhj_A           91 NLFPLTFASHGYET-----FHLLMPLYFCSHYKG-VAQGREGQNLKWIFINDLDKY-----------PMPEADKPLVQVL  153 (158)
T ss_dssp             GCEEEEEEEEECSS-----CEEEEEEEEESCCBS-CCCCTTSCEEEEEEGGGGGGS-----------CCCTTTHHHHHHH
T ss_pred             eEEEEEEEeeccCC-----cEEEEEEEEEEECCC-ccCCccccceEEEcHHHHhhC-----------CCCcchHHHHHHH
Confidence            23344444444321     134455666654322 345678899999999999765           4667777777766


Q ss_pred             H
Q 027303          200 L  200 (225)
Q Consensus       200 l  200 (225)
                      +
T Consensus       154 ~  154 (158)
T 3hhj_A          154 K  154 (158)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.80  E-value=5e-19  Score=137.57  Aligned_cols=124  Identities=14%  Similarity=0.039  Sum_probs=86.9

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCC-CCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVT-FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~-~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      .++++++.+ +|++||+||+..+.. ++|.|.+| ||++++||+         +.+||+||++||||+.+..     ...
T Consensus         7 ~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EE~Gl~~~~-----~~~   70 (140)
T 3gwy_A            7 EVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFP-GGKVEEGES---------LQEALQREIMEEMDYVIEV-----GEK   70 (140)
T ss_dssp             EEEEEEEEE-TTEEEEEEC---------CCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCEEE-----EEE
T ss_pred             EEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECC-CccCCCCCC---------HHHHHHHHHHHhhCcEEEe-----ceE
Confidence            456666666 799999999865432 78999999 999999999         7999999999999999763     344


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      ++.+.+..+.     .+...++|.+..... .++.+|..+++|++++++.++           .+.|..+.+++.+..
T Consensus        71 ~~~~~~~~~~-----~~~~~~~f~~~~~~~-~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~il~~~~~  131 (140)
T 3gwy_A           71 LLTVHHTYPD-----FEITMHAFLCHPVGQ-RYVLKEHIAAQWLSTREMAIL-----------DWAEADKPIVRKISE  131 (140)
T ss_dssp             EEEEECCCSS-----CCEEEEEEEEEECCS-CCCCCSSCEEEEECHHHHTTS-----------CBCGGGHHHHHHHHC
T ss_pred             EEEEEEEeCC-----ceEEEEEEEEEecCC-cccccccceeEeccHHHHhhC-----------CCCcccHHHHHHHHh
Confidence            5555443321     134556676664322 334578899999999999775           577888888887744

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.80  E-value=4.3e-19  Score=141.76  Aligned_cols=130  Identities=12%  Similarity=0.092  Sum_probs=97.2

Q ss_pred             CCcceeEEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           40 LNLLHRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      ....+.++.+++++.+ +++||+||+.  ..|+|.|++| ||++++||+         +.+||+||++||||+.+..   
T Consensus         6 ~~~~~~~v~~vi~~~~~~~vLL~~r~~--~~~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~---   70 (161)
T 3exq_A            6 TQPVELVTMVMVTDPETQRVLVEDKVN--VPWKAGHSFP-GGHVEVGEP---------CATAAIREVFEETGLRLSG---   70 (161)
T ss_dssp             CCCEEEEEEEEEBCTTTCCEEEECCCC--CTTTCSBBCC-CCBCCTTSC---------HHHHHHHHHHHHHCCEESC---
T ss_pred             cCCceEEEEEEEEeCCCCEEEEEEccC--CCCCCCEEcc-ceecCCCCC---------HHHHHHHHHHHhhCcEecC---
Confidence            3457788888888876 6999999883  3578899999 999999999         8999999999999999763   


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN  198 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~  198 (225)
                        ...++.+.+..+...   .+...++|.+.... ..++..|..+++|++++++.++           .+.+..+.+++.
T Consensus        71 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~  133 (161)
T 3exq_A           71 --VTFCGTCEWFDDDRQ---HRKLGLLYRASNFT-GTLKASAEGQLSWLPITALTRE-----------NSAASLPEFLQV  133 (161)
T ss_dssp             --CEEEEEEEEECSSCS---SEEEEEEEEECCEE-SCCCGGGTTTEEEECGGGCCTT-----------TBCTTHHHHHHH
T ss_pred             --CcEEEEEecccCCCC---eEEEEEEEEEeccC-CccCCCccceEEEeeHHHhhhC-----------ccChHHHHHHHH
Confidence              345666655543221   13444556554321 1245678899999999999664           577888888888


Q ss_pred             HHH
Q 027303          199 FLF  201 (225)
Q Consensus       199 ~l~  201 (225)
                      ++.
T Consensus       134 ~~~  136 (161)
T 3exq_A          134 FTG  136 (161)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            876

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.79  E-value=2.5e-18  Score=132.55  Aligned_cols=112  Identities=21%  Similarity=0.230  Sum_probs=81.2

Q ss_pred             eeEEEEEEEeC---CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303           44 HRAFSVFLFNS---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  120 (225)
Q Consensus        44 h~~v~v~i~d~---~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~  120 (225)
                      ++++++++++.   ++++||+||+.    .+|.|++| ||++++||+         +.+||+||++||||+.+..+.+  
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~~~--   66 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPP-KGHVDPGED---------EWQAAIRETKEEANITKEQLTI--   66 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESS----TTCCEESS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGEEE--
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccC----CCCcEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCCccceEE--
Confidence            46778888765   46899999862    36899998 999999999         8999999999999997653321  


Q ss_pred             e-eeeeEEEEEcCCCCCCcceEEEEEEEEecCc-cccCCccccccEEEeCHHHHHHHH
Q 027303          121 F-TPLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       121 l-~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      + .+++.+.|..+     ..+...++|.+.... ....+++|+.+++|++++++.++.
T Consensus        67 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~  119 (138)
T 1ktg_A           67 HEDCHETLFYEAK-----GKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIA  119 (138)
T ss_dssp             EEEEEEEEEEEET-----TEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHH
T ss_pred             eccccceEEEEeC-----CCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhh
Confidence            1 23344444433     114455666666533 334567889999999999999974

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.79  E-value=3.5e-18  Score=129.75  Aligned_cols=118  Identities=25%  Similarity=0.277  Sum_probs=86.3

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++++++++.+|++||+||+.      |.|++| ||++++||+         +.+||+||++||||+.+..     ...+
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~-----~~~~   61 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM------GFWVFP-KGHPEPGES---------LEEAAVREVWEETGVRAEV-----LLPL   61 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT------SCEECC-EECCCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC------CCccCC-cCcCCCCCC---------HHHHHHHHHHHhhCcEeee-----ccEE
Confidence            467888898888999999863      789999 999999999         7999999999999999763     3456


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      +.+.|..+   ..  +...++|.+.. ++. ..+++|+.+++|++++++.++           .+.+..+.++++++
T Consensus        62 ~~~~~~~~---~~--~~~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~-----------~~~~~~~~~l~~~~  121 (126)
T 1vcd_A           62 YPTRYVNP---KG--VEREVHWFLMRGEGA-PRLEEGMTGAGWFSPEEARAL-----------LAFPEDLGLLEVAL  121 (126)
T ss_dssp             EEEEEECT---TS--CEEEEEEEEEEEESC-CCCCTTCCEEEEECHHHHHHH-----------BCSHHHHHHHHHHH
T ss_pred             eEEEEecC---Cc--eEEEEEEEEEEcCCC-CCCCcceeeeEEcCHHHHHHh-----------hcChhHHHHHHHHH
Confidence            66655542   11  23334454432 223 334578899999999999886           34555666666654

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.79  E-value=2.8e-18  Score=133.46  Aligned_cols=131  Identities=15%  Similarity=0.151  Sum_probs=89.3

Q ss_pred             eeEEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           44 HRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        44 h~~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      +.++++++++.+ |++||+||+..    ||.|++| ||++++||+         +.+||+||++||||+.+....+.-+.
T Consensus         9 ~~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~~~~~~~   74 (150)
T 2o1c_A            9 PVSILVVIYAQDTKRVLMLQRRDD----PDFWQSV-TGSVEEGET---------APQAAMREVKEEVTIDVVAEQLTLID   74 (150)
T ss_dssp             SEEEEEEEEETTTCEEEEEECSSS----TTCEESE-EEECCTTCC---------HHHHHHHHHHHHHCCCHHHHTCCEEE
T ss_pred             ceEEEEEEEeCCCCEEEEEEecCC----CCceECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccccceeEEe
Confidence            357888888875 89999998753    7999998 999999999         79999999999999998632111111


Q ss_pred             eeeEEEEEc------CCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303          123 PLGRILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV  196 (225)
Q Consensus       123 ~l~~~~y~~------~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~  196 (225)
                      ......|..      ...++. .+...++|.+..........+|+.+++|++++++.++           .+.|..+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~l  142 (150)
T 2o1c_A           75 CQRTVEFEIFSHLRHRYAPGV-TRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAAL-----------TKSWSNRQAI  142 (150)
T ss_dssp             EEEEEEEECCGGGGGGBCTTC-CEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHH-----------CSCHHHHHHH
T ss_pred             eeceeeeeeecccccccCCCC-cceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhh-----------hcCHHHHHHH
Confidence            111222211      011111 1445566766654322233478999999999999987           4667777777


Q ss_pred             HHHH
Q 027303          197 DNFL  200 (225)
Q Consensus       197 ~~~l  200 (225)
                      +.++
T Consensus       143 ~~~~  146 (150)
T 2o1c_A          143 EQFV  146 (150)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            7764

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.79  E-value=1.8e-18  Score=135.90  Aligned_cols=126  Identities=18%  Similarity=0.271  Sum_probs=92.4

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      |.++.+++. .+|++||+||+.   ..+|.|.+| ||++++||+         +.+||+||++||||+.+..     ...
T Consensus         5 ~~~v~~ii~-~~~~vLl~~r~~---~~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~~   65 (153)
T 3shd_A            5 HVTVACVVH-AEGKFLVVEETI---NGKALWNQP-AGHLEADET---------LVEAAARELWEETGISAQP-----QHF   65 (153)
T ss_dssp             EEEEEEEEE-ETTEEEEEEEEE---TTEEEEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCC-----CEE
T ss_pred             ceEEEEEEE-eCCEEEEEEecC---CCCCCEECC-eEEeCCCCC---------HHHHHHHHHHHHHCccccc-----CcE
Confidence            445555554 469999999872   357899999 999999999         8999999999999999873     244


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecCc--cccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRDV--SVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~--~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      ++.+.|..+..    .+...++|.+....  ...++++|+.+++|++++++.    .     .+....|.....+.+|+.
T Consensus        66 ~~~~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~----~-----~~~~~~~~~~~~l~~~~~  132 (153)
T 3shd_A           66 IRMHQWIAPDK----TPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEIL----Q-----ASNLRSPLVAESIRCYQS  132 (153)
T ss_dssp             EEEEEECCTTS----CCEEEEEEEEECSSCCCCCCCSTTCCEEEEECHHHHH----T-----CSCBSSTHHHHHHHHHHH
T ss_pred             EEEEEEecCCC----ceEEEEEEEEEccccCcCCCCcccceeeEEecHHHhh----c-----cccccCchHHHHHHHHHh
Confidence            55555554421    14455667666432  255667899999999999991    2     145678888888888865

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.78  E-value=3e-18  Score=135.28  Aligned_cols=118  Identities=14%  Similarity=0.129  Sum_probs=86.3

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      ...++++++++.++++||+||+..  .++|.|++| ||++++||+         +.+||+||++||||+.+.   ...+.
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~--~~~g~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~---~~~~~   81 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLP---ITAGQ   81 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSS--SSTTSEECC-EEECCTTCC---------HHHHHHHHHHHHHSSCCC---GGGSE
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCC--CCCCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCCCC---cccce
Confidence            346788888888899999999853  368999999 999999999         799999999999999964   11234


Q ss_pred             eeeEEEEEcCCC---CCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHH
Q 027303          123 PLGRILYKAPSD---GKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       123 ~l~~~~y~~~~~---~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +++.+.+..+..   .....+...++|.+... ..+..+++|+.+++|++++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  138 (160)
T 1rya_A           82 FYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             EEEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHC
T ss_pred             EEEEEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhc
Confidence            566554433321   11112455566766643 344556778999999999999874

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.78  E-value=1.9e-18  Score=135.43  Aligned_cols=128  Identities=12%  Similarity=0.130  Sum_probs=91.4

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++.+++ +.+|++||+||+....  +|.|++| ||++++||+         +.+||+||++||||+.+..     ...+
T Consensus         9 ~~v~~ii-~~~~~vLl~~r~~~~~--~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~   70 (153)
T 2b0v_A            9 VTVAAVI-EQDDKYLLVEEIPRGT--AIKLNQP-AGHLEPGES---------IIQACSREVLEETGHSFLP-----EVLT   70 (153)
T ss_dssp             EEEEEEC-EETTEEEEEEECSSSS--CCEEECS-EEECCTTSC---------HHHHHHHHHHHHHSEEEEE-----EEEE
T ss_pred             EEEEEEE-eeCCEEEEEEEcCCCC--CCeEECC-CcCcCCCCC---------HHHHHHHHHHHhhCcEecc-----ceEE
Confidence            3444444 4568999999976543  8999999 999999999         8999999999999999763     3445


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      +.+.|..+..   ..+.+.++|.+...  .....+++|+.+++|++++++.++..        ..+.|.++.++.+|+.
T Consensus        71 ~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~--------~~~~~~~~~~l~~~~~  138 (153)
T 2b0v_A           71 GIYHWTCASN---GTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQA--------MHRTPLVMQCIEDYHA  138 (153)
T ss_dssp             EEEEEEETTT---TEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGG--------GBSSTHHHHHHHHHHT
T ss_pred             EEEEEeCCCC---CcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhc--------ccCcHHHHHHHHHHHh
Confidence            5555554431   11334455655532  12234567899999999999999721        2578888888888854

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.78  E-value=2.9e-18  Score=132.25  Aligned_cols=126  Identities=17%  Similarity=0.094  Sum_probs=89.9

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      |+.+++++++.+|++||++|+..+ .++|.|++| ||+++.||+         +++||+||++||||+.+..     ...
T Consensus         8 ~~~~~~~ii~~~~~vLl~~r~~~~-~~~g~w~lP-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~-----~~~   71 (140)
T 2rrk_A            8 MIEVVAAIIERDGKILLAQRPAQS-DQAGLWEFA-GGKVEPDES---------QRQALVRELREELGIEATV-----GEY   71 (140)
T ss_dssp             EEEEEEEEEEETTEEEEEECCSSC-SCCCCEECC-EEECCTTSC---------HHHHHHHHHHHHSCEEEEC-----CEE
T ss_pred             cceEEEEEEEcCCEEEEEEcCCCC-CCCCEEECC-ceecCCCCC---------HHHHHHHHHHHHHCCeeec-----ccE
Confidence            444455555677999999997554 579999999 999999999         7999999999999999763     234


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      ++.+.+..+.     .+...++|.+..... .++..|+.+++|++++++.++           .+.+..+.+++.++..
T Consensus        72 ~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~~  133 (140)
T 2rrk_A           72 VASHQREVSG-----RIIHLHAWHVPDFHG-TLQAHEHQALVWCSPEEALQY-----------PLAPADIPLLEAFMAL  133 (140)
T ss_dssp             EEEEEEEETT-----EEEEEEEEEESEEEE-CCCCSSCSCEEEECHHHHTTS-----------CCCTTHHHHHHHHHHH
T ss_pred             EEEEEEecCC-----cEEEEEEEEEEeeCC-CcCCCccceeEEeCHHHHhhC-----------CCChhHHHHHHHHHHH
Confidence            5555444321     133345565543211 234567889999999999764           4677777788777653

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.77  E-value=5.2e-18  Score=132.01  Aligned_cols=128  Identities=17%  Similarity=0.122  Sum_probs=86.8

Q ss_pred             CcceeEEEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           41 NLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        41 ~~~h~~v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      ...|.++.+++++. +|++||+||+      +|.|++| ||++++||+         +.+||+||+.||||+.+..    
T Consensus        15 ~~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~----   74 (148)
T 2azw_A           15 YQTRYAAYIIVSKPENNTMVLVQAP------NGAYFLP-GGEIEGTET---------KEEAIHREVLEELGISVEI----   74 (148)
T ss_dssp             CEECCEEEEECEEGGGTEEEEEECT------TSCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE----
T ss_pred             eeeeeEEEEEEECCCCCeEEEEEcC------CCCEeCC-CcccCCCCC---------HHHHHHHHHHHHhCCeeEe----
Confidence            34566777888875 6899999874      3899999 999999999         7999999999999999763    


Q ss_pred             ceeeeeEEE-EEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303          120 EFTPLGRIL-YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN  198 (225)
Q Consensus       120 ~l~~l~~~~-y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~  198 (225)
                       ...++.+. +..+.......+...++|.+........+.+|+.+++|++++++.++           .+.+..+.++++
T Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~  142 (148)
T 2azw_A           75 -GCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRL-----------LKRGSHRWAVEK  142 (148)
T ss_dssp             -EEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHH-----------BSCHHHHHHHHH
T ss_pred             -eeEEEEEEEEEcCCCCCcceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhh-----------hcchhHHHHHHH
Confidence             23344332 11111111111344566666543222234477889999999999987           355666677776


Q ss_pred             HH
Q 027303          199 FL  200 (225)
Q Consensus       199 ~l  200 (225)
                      ++
T Consensus       143 ~~  144 (148)
T 2azw_A          143 WL  144 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.77  E-value=3.5e-18  Score=135.91  Aligned_cols=127  Identities=18%  Similarity=0.196  Sum_probs=92.2

Q ss_pred             CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      +...+.++.+++++ +|++||+||+...  ++|.|++| ||+++.||+         +.+||+||++||||+.+...   
T Consensus        25 ~~~~~~~v~~vi~~-~~~vLL~~r~~~~--~~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~---   88 (157)
T 4dyw_A           25 TEQPRVGCGAAIVR-DGRILLIKRKRAP--EAGCWGLP-GGKVDWLEP---------VERAVCREIEEELGIALERA---   88 (157)
T ss_dssp             -CCCEEEEEEEEEE-TTEEEEEEECSSS--STTCEECC-EEECCTTCC---------HHHHHHHHHHHHHSCEEESC---
T ss_pred             CCCceeEEEEEEEE-CCEEEEEEecCCC--CCCEEECC-cccCCCCCC---------HHHHHHHHHHHHHCcccccC---
Confidence            44567888888888 6999999998543  78999999 999999999         89999999999999998632   


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEec-Cccc-cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  197 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~  197 (225)
                        ..++.+.+.....   ..+...++|.+.. .... ..+++|+.+++|++++++.+            .+.+..+.+++
T Consensus        89 --~~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~------------~l~~~~~~~l~  151 (157)
T 4dyw_A           89 --TLLCVVDHIDAAN---GEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ------------PLTHATRIALE  151 (157)
T ss_dssp             --EEEEEEEEEETTT---TEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCS------------SBCHHHHHHHH
T ss_pred             --cEEEEEEeeccCC---CcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccc------------ccCHHHHHHHH
Confidence              3455554443211   1234445666553 2222 33557899999999999854            46777777777


Q ss_pred             HH
Q 027303          198 NF  199 (225)
Q Consensus       198 ~~  199 (225)
                      .|
T Consensus       152 ~l  153 (157)
T 4dyw_A          152 QV  153 (157)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.76  E-value=3.4e-18  Score=134.21  Aligned_cols=114  Identities=19%  Similarity=0.195  Sum_probs=76.4

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++++++++.+|++||.+|.... ..++.|++| ||++++||+         +++||+||++||||+.+..     +.++
T Consensus         6 ~~v~vi~~~~~~~vLLv~~~r~~-~~~~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~l   69 (145)
T 2w4e_A            6 RAVFILPVTAQGEAVLIRQFRYP-LRATITEIV-AGGVEKGED---------LGAAAARELLEEVGGAASE-----WVPL   69 (145)
T ss_dssp             EEEEEEEEETTSEEEEEEEEETT-TTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCEECSE-----EEEC
T ss_pred             CEEEEEEEcCCCEEEEEEEEecC-CCCCEEEeC-CccCCCCCC---------HHHHHHHHHHHhhCCccCe-----EEEE
Confidence            57888888888999876543222 245799999 999999999         8999999999999999762     3444


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +.+ |..+   +.. ....++|.+..  .....++++|+.+++|++++++.+++..+
T Consensus        70 ~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  121 (145)
T 2w4e_A           70 PGF-YPQP---SIS-GVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAG  121 (145)
T ss_dssp             CCB-BSCT---TTC-CCEEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHHHT
T ss_pred             ecC-cCCC---Ccc-CceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcC
Confidence            443 2211   111 23445555542  23344567899999999999999998875

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.76  E-value=9.1e-18  Score=133.03  Aligned_cols=113  Identities=23%  Similarity=0.212  Sum_probs=73.6

Q ss_pred             eEEEEEEE---------eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCC
Q 027303           45 RAFSVFLF---------NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  115 (225)
Q Consensus        45 ~~v~v~i~---------d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~  115 (225)
                      ++++++++         |+++++||.||+..    +|.|.+| ||++++|||         +.+||+||++||||+.+..
T Consensus         4 ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~----~~~W~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~   69 (155)
T 3u53_A            4 RACGLIIFRRCLIPKVDNNAIEFLLLQASDG----IHHWTPP-KGHVEPGED---------DLETALRETQEEAGIEAGQ   69 (155)
T ss_dssp             CEEEEEEEEECCCSSSSSCSEEEEEEEESSS----SCCEECS-EEECCSSCC---------HHHHHHHHHHHHHCCCGGG
T ss_pred             eEeEEEEEccccccceeCCCcEEEEEEecCC----CCCEECC-eeeccCCCC---------HHHHHHHHHHHHHCCcccc
Confidence            35566665         44568999999743    5889999 999999999         8999999999999999763


Q ss_pred             CCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec-Cccc-cCCccccccEEEeCHHHHHHHHH
Q 027303          116 VPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR  177 (225)
Q Consensus       116 i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-~~~~~Ev~~~~Wv~~eel~~~~~  177 (225)
                      .     ..++.+.+......... ....++|++.. +... ...++|+.+++|++++|+.+++.
T Consensus        70 ~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~  127 (155)
T 3u53_A           70 L-----TIIEGFKRELNYVARNK-PKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQ  127 (155)
T ss_dssp             E-----EEEEEEEEEEEEEETTE-EEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHC
T ss_pred             c-----eeeeeEeeeeecCCCcc-eeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcC
Confidence            2     22332222211111111 22233333332 2222 22346899999999999988753

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.76  E-value=6.2e-18  Score=135.96  Aligned_cols=112  Identities=19%  Similarity=0.225  Sum_probs=78.2

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++++++++ +|++||.+|.... .++|.|++| ||++++||+         +++||+||++||||+ +..     +.++
T Consensus        35 ~~v~vii~~-~~~vLL~~~~r~~-~~~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl-~~~-----~~~l   96 (170)
T 1v8y_A           35 PAVAVIALR-EGRMLFVRQMRPA-VGLAPLEIP-AGLIEPGED---------PLEAARRELAEQTGL-SGD-----LTYL   96 (170)
T ss_dssp             CEEEEEEEE-TTEEEEEECCBTT-TTBCCBBCS-EEECCTTCC---------HHHHHHHHHHHHHSE-EEE-----EEEE
T ss_pred             CeEEEEEEE-CCEEEEEEEEeCC-CCCCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCC-CcC-----ceee
Confidence            478888888 8999998875433 578999999 999999999         899999999999999 652     4456


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +.+ +..+   +.. +...++|.+..  .....++++|+.+++|++++++.+++..+
T Consensus        97 ~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  148 (170)
T 1v8y_A           97 FSY-FVSP---GFT-DEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRG  148 (170)
T ss_dssp             EEE-ESCT---TTB-CCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTT
T ss_pred             EEE-ecCC---Ccc-ccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHCC
Confidence            554 2222   111 33455565543  23344567889999999999999999886

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.76  E-value=3.1e-18  Score=133.77  Aligned_cols=124  Identities=17%  Similarity=0.100  Sum_probs=88.9

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +..+++++++.+|++||++|+.. ..++|.|++| ||++++||+         +.+||.||+.||||+.+...     ..
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~-~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~   84 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPEN-NSLAGQWEFP-GGKIENGET---------PEEALARELNEELGIEAEVG-----EL   84 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTT-STTTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHSCEEECC-----CE
T ss_pred             eEEEEEEEEEECCEEEEEEeCCC-CCCCCeEECC-ceeeCCCCC---------HHHHHHHHHHHHHCCccccC-----ce
Confidence            55666666677799999999865 3589999998 999999999         89999999999999998743     23


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      ++.+.+..+.     .+...++|.+.... ..++.+|..+++|++++++.++           .+.+..+.+++.++
T Consensus        85 ~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  144 (153)
T 3ees_A           85 KLACTHSYGD-----VGILILFYEILYWK-GEPRAKHHMMLEWIHPEELKHR-----------NIPEANRKILHKIY  144 (153)
T ss_dssp             EEEEEEEETT-----EEEEEEEEEECEEE-SCCCCSSSSEEEEECGGGGGGS-----------CCCHHHHTTHHHHH
T ss_pred             EEEEEEecCC-----CeEEEEEEEEEECC-CCcCCCccceEEEecHHHhhhC-----------CCCcchHHHHHHHH
Confidence            4444444321     12234555554321 1245678899999999999764           46676666666664

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.75  E-value=6.1e-18  Score=137.25  Aligned_cols=114  Identities=18%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++++++++.+|++||++|... ..++|.|++| ||++++||+         +++||+||++||||+.+..     +..+
T Consensus        42 ~~v~v~i~~~~~~vLL~~r~~~-~~~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~~l  105 (182)
T 2yvp_A           42 AASFVLPVTERGTALLVRQYRH-PTGKFLLEVP-AGKVDEGET---------PEAAARRELREEVGAEAET-----LIPL  105 (182)
T ss_dssp             EEEEEEEBCTTSEEEEEEEEEG-GGTEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCEECSC-----EEEC
T ss_pred             CEEEEEEEcCCCEEEEEEeccC-CCCCcEEEec-cccCCCCcC---------HHHHHHHHHHHHhCCCccc-----EEEE
Confidence            5788888888899999988744 3468999999 999999999         8999999999999999763     3445


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec---CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +.+. ..   .+.. +..+++|.+..   ......+++|+.+++|++++++.+++..+
T Consensus       106 ~~~~-~~---~~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  158 (182)
T 2yvp_A          106 PSFH-PQ---PSFT-AVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG  158 (182)
T ss_dssp             CCBC-SC---TTTB-CCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred             EEEe-CC---CCcc-ccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            4431 11   1111 34556676653   23344577899999999999999999875

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.75  E-value=7.1e-18  Score=132.80  Aligned_cols=126  Identities=10%  Similarity=0.082  Sum_probs=86.2

Q ss_pred             CcceeEEEEEEEeCCCe----EEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCC
Q 027303           41 NLLHRAFSVFLFNSKYE----LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  116 (225)
Q Consensus        41 ~~~h~~v~v~i~d~~g~----vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i  116 (225)
                      ...|.++.+++++ +++    +|+++|+...  ++| |.+| ||++++||+         +.+||+||++||||+.+.. 
T Consensus         5 ~~~~~~~~~ii~~-~~~~~~~vLl~~r~~~~--~~g-w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-   69 (155)
T 2b06_A            5 QLTILTNICLIED-LETQRVVMQYRAPENNR--WSG-YAFP-GGHVENDEA---------FAESVIREIYEETGLTIQN-   69 (155)
T ss_dssp             GCEEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECC-CCBCCTTSC---------HHHHHHHHHHHHHSEEEES-
T ss_pred             cCcEEEEEEEEEE-CCCCeEEEEEEECCCCC--CCC-Eecc-ceecCCCCC---------HHHHHHHHHHHHhCccccC-
Confidence            3467788888877 466    9999887654  788 9998 999999999         8999999999999999863 


Q ss_pred             CCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303          117 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV  196 (225)
Q Consensus       117 ~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~  196 (225)
                          ...++.+.+....  +  .+...++|.+.... ..++..|..+++|++++++.++           .+.+..+.++
T Consensus        70 ----~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l  129 (155)
T 2b06_A           70 ----PQLVGIKNWPLDT--G--GRYIVICYKATEFS-GTLQSSEEGEVSWVQKDQIPNL-----------NLAYDMLPLM  129 (155)
T ss_dssp             ----CEEEEEEEEECTT--S--CEEEEEEEEECEEE-ECCCCBTTBEEEEEEGGGGGGS-----------CBCTTHHHHH
T ss_pred             ----CcEEEEEeeccCC--C--ceEEEEEEEEEecC-CCCCCCcceeeEEeeHHHhhhC-----------CCChhHHHHH
Confidence                2345555444321  1  13445566554321 1234467899999999999775           3556677777


Q ss_pred             HHHHH
Q 027303          197 DNFLF  201 (225)
Q Consensus       197 ~~~l~  201 (225)
                      +.++.
T Consensus       130 ~~~~~  134 (155)
T 2b06_A          130 EMMEA  134 (155)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            76643

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.75  E-value=1.3e-17  Score=137.44  Aligned_cols=119  Identities=15%  Similarity=0.171  Sum_probs=76.7

Q ss_pred             CCcceeEEEEEEEeCCC-eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCC-CCCCC
Q 027303           40 LNLLHRAFSVFLFNSKY-ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC-AEDVP  117 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~g-~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~-~~~i~  117 (225)
                      ....|.++++++++.++ ++||++|.     .+|.|.+| ||++++||+         +.+||+||++||||+. +..+.
T Consensus        41 ~~~~h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lP-gG~ve~gEs---------~~eaa~REl~EEtGl~~~~~~~  105 (197)
T 3fcm_A           41 NTIAHLTSSAFAVNKERNKFLMIHHN-----IYNSWAWT-GGHSDNEKD---------QLKVAIKELKEETGVKNPTPLL  105 (197)
T ss_dssp             CSSEEEEEEEEEECTTSCEEEEEEET-----TTTEEECE-EEECTTCCB---------HHHHHHHHHHHHHCCSSCEESC
T ss_pred             CCCccEEEEEEEEECCCCEEEEEEec-----CCCCEECC-ccccCCCCC---------HHHHHHHHHHHHHCCCcccccC
Confidence            45689999999999876 99999886     35899999 999999999         8999999999999998 33211


Q ss_pred             CCceeeeeEEEEEcCCC--CCC---cceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHH
Q 027303          118 VDEFTPLGRILYKAPSD--GKW---GEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       118 ~~~l~~l~~~~y~~~~~--~~~---~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      . .+..+..+  ..+..  .+.   ....+..+|++..  ...+.++++|+.+++|++++++.+++
T Consensus       106 ~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  168 (197)
T 3fcm_A          106 D-KAFALDVL--TVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYC  168 (197)
T ss_dssp             S-SCSEEEEE--EECCEEETTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHC
T ss_pred             C-CceEEEEe--eecCccccCcccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhc
Confidence            0 11111111  11110  000   0011223344443  23456677899999999999999884

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.74  E-value=1.1e-16  Score=125.29  Aligned_cols=123  Identities=16%  Similarity=0.140  Sum_probs=83.9

Q ss_pred             EEEEEEE---eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           46 AFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        46 ~v~v~i~---d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      ++.++++   +.++++||++|+.     +|.|.+| ||++++||+         +.+||+||++||||+.+...    ..
T Consensus         7 ~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~----~~   67 (149)
T 3son_A            7 QVLVIPFIKTEANYQFGVLHRTD-----ADVWQFV-AGGGEDEEA---------ISETAKRESIEELNLDVDVK----MY   67 (149)
T ss_dssp             EEEEEEEEECSSSEEEEEEEESS-----SSCEECE-EEECCTTCC---------HHHHHHHHHHHHHTCCSCCC----EE
T ss_pred             EEEEEEEEecCCCeEEEEEEEcC-----CCCEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCCcccc----eE
Confidence            4445554   5567999999974     3899999 999999999         89999999999999998731    11


Q ss_pred             eeeEE-EEEc---CCCCCCcceEEEEEEEEecC---ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHH
Q 027303          123 PLGRI-LYKA---PSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV  195 (225)
Q Consensus       123 ~l~~~-~y~~---~~~~~~~e~~~~~v~~~~~~---~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~  195 (225)
                      .+..+ .+..   ...+.  .+...++|.+...   +.+.+ ++|+.+++|++++++.++           .+.|..+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~-----------~~~~~~~~~  133 (149)
T 3son_A           68 SLDSHASIPNFHFSFNKP--YVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQL-----------LEWDSNKTA  133 (149)
T ss_dssp             EEEEEEEEEGGGTCSSSC--SEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHH-----------CCCHHHHHH
T ss_pred             EEEeeecccceeeccCCc--eEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHH-----------hcCHHHHHH
Confidence            12111 1111   11111  1344466766653   34454 488999999999999987           455777777


Q ss_pred             HHHHHH
Q 027303          196 VDNFLF  201 (225)
Q Consensus       196 ~~~~l~  201 (225)
                      +..+..
T Consensus       134 l~~~~~  139 (149)
T 3son_A          134 LYELNE  139 (149)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777643

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.74  E-value=3.8e-18  Score=134.89  Aligned_cols=119  Identities=23%  Similarity=0.333  Sum_probs=81.5

Q ss_pred             CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      ++.+|.++++++++.+|++||+||+.    +||.|++| ||++++||+         +++||+||++||||+.+..+   
T Consensus        10 ~~~~~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~---   72 (165)
T 1f3y_A           10 PEGYRRNVGICLMNNDKKIFAASRLD----IPDAWQMP-QGGIDEGED---------PRNAAIRELREETGVTSAEV---   72 (165)
T ss_dssp             CSSCCCEEEEEEECTTSCEEEEEETT----EEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCSEEE---
T ss_pred             ccceeeeEEEEEECCCCcEEEEecCC----CCCcEECC-eeccCCCCC---------HHHHHHHHHHHhhCCChhhh---
Confidence            56789999999999889999999972    46999999 899999999         89999999999999986421   


Q ss_pred             ceeeeeE--EEEEcCC----------CCCCcceEEEEEEEEecC---ccccC-----CccccccEEEeCHHHHHHHHHh
Q 027303          120 EFTPLGR--ILYKAPS----------DGKWGEHELDYLLFIVRD---VSVNP-----NPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       120 ~l~~l~~--~~y~~~~----------~~~~~e~~~~~v~~~~~~---~~~~~-----~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                        .....  +.|..+.          ...+. ....++|.+...   ..+.+     +++|+.+++|++++++.+++..
T Consensus        73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  148 (165)
T 1f3y_A           73 --IAEVPYWLTYDFPPKVREKLNIQWGSDWK-GQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVE  148 (165)
T ss_dssp             --EEECSSCCBCCCCHHHHHHHGGGSCSSCC-SCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCG
T ss_pred             --hcccccceeeecCcccccccccccccccc-CceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhh
Confidence              11100  1111110          00111 112344444432   22333     3578999999999999998533

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.74  E-value=2.4e-18  Score=145.12  Aligned_cols=144  Identities=12%  Similarity=0.110  Sum_probs=88.7

Q ss_pred             cCCcceeEEEEEEEeCCCeEEEeeecCCCC--CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCC
Q 027303           39 SLNLLHRAFSVFLFNSKYELLLQQRSGTKV--TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  116 (225)
Q Consensus        39 ~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~--~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i  116 (225)
                      ..+.++..+..+++..+|++|+++|+..+.  .++|.|++.+|||+++||+.   ++.+++++||+||++||||+.+.  
T Consensus        62 ~d~~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~---~p~EtleeAa~REl~EEtGl~v~--  136 (211)
T 3e57_A           62 YDETTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGA---TPREAFLKGLEREVNEEVDVSLR--  136 (211)
T ss_dssp             TCTTEEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCS---SHHHHHHHHHHHHHHHHEEEEEE--
T ss_pred             cCCcccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCC---CchhhHHHHHHHHHHHHhCCeee--
Confidence            456677777666666689999999986542  36799999349999999981   01123699999999999999865  


Q ss_pred             CCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303          117 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV  196 (225)
Q Consensus       117 ~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~  196 (225)
                         .+.+++.+.+....   .....+.++|.+... ...+.++|..+++|+++++|.++...-      ...+|.+..++
T Consensus       137 ---~~~~ig~~~~~~~~---~~~~~l~~~f~~~~~-~g~~~~~E~~~~~W~~~~eL~~~~~~l------e~wS~lvl~~l  203 (211)
T 3e57_A          137 ---ELEFLGLINSSTTE---VSRVHLGALFLGRGK-FFSVKEKDLFEWELIKLEELEKFSGVM------EGWSKISAAVL  203 (211)
T ss_dssp             ---EEEEEEEEECCSSH---HHHTEEEEEEEEEEE-EEEESCTTTCEEEEEEHHHHHHHGGGC------CHHHHHHHHHH
T ss_pred             ---ccEEEEEEeccCCC---CCeEEEEEEEEEEeC-CceeCCCCeEEEEEEEHHHHHHhHhhc------cchhHHHHHHH
Confidence               34566665442110   011223345655532 334456778899999999999975441      13455555556


Q ss_pred             HHHH
Q 027303          197 DNFL  200 (225)
Q Consensus       197 ~~~l  200 (225)
                      ++|+
T Consensus       204 ~~~~  207 (211)
T 3e57_A          204 LNLF  207 (211)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            5553

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.73  E-value=2.2e-17  Score=134.11  Aligned_cols=126  Identities=14%  Similarity=0.154  Sum_probs=90.7

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      .++++++++++.+|++||++|...  .++|.|.+| ||++++||+         +++||+||++||||+.+..     +.
T Consensus        23 ~~~~~~~~vi~~~~~vLL~~r~~~--~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~   85 (176)
T 3q93_A           23 ASRLYTLVLVLQPQRVLLGMKKRG--FGAGRWNGF-GGKVQEGET---------IEDGARRELQEESGLTVDA-----LH   85 (176)
T ss_dssp             CEEEEEEEEEECSSEEEEEEECSS--TTTTSEECE-EEECCTTSC---------HHHHHHHHHHHHHSCEESC-----CE
T ss_pred             CCcEEEEEEEEeCCEEEEEEEcCC--CCCCeEECc-eecCCCCCC---------HHHHHHHHHHHHHCCccee-----eE
Confidence            456777777777899999998643  378999999 999999999         8999999999999999863     35


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      +++.+.+..+...   .+...++|.+.. .+.  +.+.|..+++|++++++.++           .+.|..+.+++.++.
T Consensus        86 ~l~~~~~~~~~~~---~~~~~~~f~~~~~~~~--~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~  149 (176)
T 3q93_A           86 KVGQIVFEFVGEP---ELMDVHVFCTDSIQGT--PVESDEMRPCWFQLDQIPFK-----------DMWPDDSYWFPLLLQ  149 (176)
T ss_dssp             EEEEEEEEETTCS---CEEEEEEEEESCEESC--CCCCSSEEEEEEETTCCCGG-----------GBCTTHHHHHHHHHT
T ss_pred             EEEEEEEEcCCCC---cEEEEEEEEEECCCCC--cCCCcceeeEEeeHHHcccc-----------ccCcchHHHHHHHHc
Confidence            5676665544221   134456666653 222  33456778899999999765           355555666666643

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.73  E-value=2.6e-17  Score=130.09  Aligned_cols=136  Identities=13%  Similarity=0.084  Sum_probs=88.6

Q ss_pred             chhhcccCCcceeEEEEEEEeC---CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHH-HHHHHHHHhH
Q 027303           33 LMEKIESLNLLHRAFSVFLFNS---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVR-NAAQRKLLDE  108 (225)
Q Consensus        33 ~~~~~~~~~~~h~~v~v~i~d~---~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~-eaa~REl~EE  108 (225)
                      |+++.++......++.++|.+.   +|++||+||+.. ..++|+|++| ||+++.||+         +. +||+||++||
T Consensus         8 Pvk~~k~~~~~~~~~~~vi~~~~~~~~~vLl~~R~~~-~~~~g~w~~P-gG~~e~gE~---------~~~~a~~REl~EE   76 (155)
T 1x51_A            8 PRKASRKPPREESSATCVLEQPGALGAQILLVQRPNS-GLLAGLWEFP-SVTWEPSEQ---------LQRKALLQELQRW   76 (155)
T ss_dssp             TTSSSCSCTTEEEEEEEEEEEECSSSEEEEEEECCCC-STTCSCEECC-EEECCSSHH---------HHHHHHHHHHHHH
T ss_pred             CCcCCCCCCCeEEEEEEEEEecCCCCCEEEEEECCCC-CCCCceecCC-ccccCCCCC---------HHHHHHHHHHHHH
Confidence            4444433322333444455554   479999999754 4689999999 999999999         75 9999999999


Q ss_pred             hC-CCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcc
Q 027303          109 LG-ICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK  187 (225)
Q Consensus       109 tG-l~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~  187 (225)
                      || +.+..     +..++.+.+....     .+...++|.+..... .+...|..+++|++++++.++           .
T Consensus        77 ~g~l~~~~-----~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~  134 (155)
T 1x51_A           77 AGPLPATH-----LRHLGEVVHTFSH-----IKLTYQVYGLALEGQ-TPVTTVPPGARWLTQEEFHTA-----------A  134 (155)
T ss_dssp             SCCCCSTT-----CEECCCBCCBCSS-----CEEEEEEEEEECSSC-CCCCCCCTTEEEEEHHHHHHS-----------C
T ss_pred             hCCcceee-----eeecceEEEecCC-----ccEEEEEEEEEEcCC-CCCCCCCCccEEccHHHhhhc-----------C
Confidence            99 77652     2233333222111     122335566654321 123456789999999999874           5


Q ss_pred             cChhHHHHHHHHHH
Q 027303          188 LSPWFRLVVDNFLF  201 (225)
Q Consensus       188 ~~p~~~~~~~~~l~  201 (225)
                      +++..+.+++.++.
T Consensus       135 ~~~~~~~~l~~~~~  148 (155)
T 1x51_A          135 VSTAMKKVFRVYQG  148 (155)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            77878888877754

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.72  E-value=3.4e-17  Score=129.91  Aligned_cols=129  Identities=18%  Similarity=0.193  Sum_probs=89.1

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      .|.++++++++ +|++||+||+.     +|.|.+| ||++++||+         +.+||+||++||||+.+.........
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~-----~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~   68 (159)
T 3f6a_A            5 RHFTVSVFIVC-KDKVLLHLHKK-----AKKMLPL-GGHIEVNEL---------PEEACIREAKEEAGLNVTLYNPIDIN   68 (159)
T ss_dssp             SCEEEEEEEEE-TTEEEEEECSS-----SCCEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCEECCCCCHH
T ss_pred             ceEEEEEEEEE-CCEEEEEEcCC-----CCeEECC-ccCccCCCC---------HHHHHHHHHHHHhCCCceeccccccc
Confidence            57888999988 68999999863     5899999 999999999         89999999999999998743321000


Q ss_pred             -----------e----eeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCc
Q 027303          123 -----------P----LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGL  186 (225)
Q Consensus       123 -----------~----l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~  186 (225)
                                 .    .....+..+  .  ....+.++|.+.. .+.+.++++|+.+++|++++++.++          .
T Consensus        69 ~~~~~~~~~~~~~~~p~~~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~----------~  134 (159)
T 3f6a_A           69 LKKSCDLSGEKLLINPIHTILGDVS--P--NHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNA----------H  134 (159)
T ss_dssp             HHHHHHHTTCEEECCCSEEEEECSS--S--SSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTC----------S
T ss_pred             ccccccccccccccCccccccccCC--C--CceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhC----------c
Confidence                       0    000111111  0  1123445666664 4455566789999999999999765          1


Q ss_pred             ccChhHHHHHHHHHH
Q 027303          187 KLSPWFRLVVDNFLF  201 (225)
Q Consensus       187 ~~~p~~~~~~~~~l~  201 (225)
                      .+.+..+.+.+.++.
T Consensus       135 ~~~~~~~~l~~~~~~  149 (159)
T 3f6a_A          135 NIQENILVMATEALD  149 (159)
T ss_dssp             SSCHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHH
Confidence            356666666666643

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.72  E-value=1.9e-17  Score=135.79  Aligned_cols=115  Identities=16%  Similarity=-0.032  Sum_probs=77.5

Q ss_pred             CCcceeEEEEEEEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC
Q 027303           40 LNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP  117 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~  117 (225)
                      ++..+.++ +++++.+|  ++||++|+..+..++|.|++| ||++++||+         +++||+||++||||+.+..  
T Consensus        31 ~~~~~~~~-~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~--   97 (194)
T 1nqz_A           31 PHYRRAAV-LVALTREADPRVLLTVRSSELPTHKGQIAFP-GGSLDAGET---------PTQAALREAQEEVALDPAA--   97 (194)
T ss_dssp             --CEEEEE-EEEEESSSSCBBCEEEEC------CCCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGG--
T ss_pred             CCCceEEE-EEEEecCCCeEEEEEEecCCCCCCCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCCccc--
Confidence            33444444 44447777  899999987656789999998 999999999         8999999999999999763  


Q ss_pred             CCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC--cc-ccCCccccccEEEeCHHHH-HHH
Q 027303          118 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VS-VNPNPDEVAEYKYVNREQL-KEL  175 (225)
Q Consensus       118 ~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~-~~~~~~Ev~~~~Wv~~eel-~~~  175 (225)
                         +..++.+.+....    . ....++|.+...  .. ...+++|+.+++|++++++ .+.
T Consensus        98 ---~~~l~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  151 (194)
T 1nqz_A           98 ---VTLLGELDDVFTP----V-GFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVP  151 (194)
T ss_dssp             ---CEEEEECCCEEET----T-TEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSC
T ss_pred             ---eEEEEEccCccCC----C-CeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccCC
Confidence               3345544322211    1 234456665543  23 4567789999999999999 654

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.72  E-value=6.3e-18  Score=133.43  Aligned_cols=110  Identities=16%  Similarity=0.140  Sum_probs=80.3

Q ss_pred             cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      ..+.++++++++.+|++||+||+..  .++|.|++| ||+++.||+         +.+||+||++||||+.+..     .
T Consensus        18 ~~~~~v~~~i~~~~~~vLl~~r~~~--~~~~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~   80 (156)
T 3gg6_A           18 NVCYVVLAVFLSEQDEVLLIQEAKR--ECRGSWYLP-AGRMEPGET---------IVEALQREVKEEAGLHCEP-----E   80 (156)
T ss_dssp             TCEEEEEEECBCTTSEEEEEECCCT--TSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEE-----E
T ss_pred             ceEEEEEEEEEeCCCEEEEEEecCC--CCCCEEECC-eeeccCCCC---------HHHHHHHHHHHhhCceeEe-----e
Confidence            4567778888888899999998743  378999999 999999999         8999999999999999763     2


Q ss_pred             eeeeEEEEEcCCCCCCcceEEEEEEEEec-Cccc---cCCccccccEEEeCHHHHHHHH
Q 027303          122 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV---NPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~---~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      ..++.+  ...  .    +.+.++|.+.. ....   ..+++|+.+++|++++++.+++
T Consensus        81 ~~~~~~--~~~--~----~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  131 (156)
T 3gg6_A           81 TLLSVE--ERG--P----SWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPL  131 (156)
T ss_dssp             EEEEEE--ESS--T----TEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSB
T ss_pred             eEEEEE--cCC--C----CEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccc
Confidence            334433  211  1    23445555543 2222   2345789999999999997653

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.72  E-value=1.5e-17  Score=135.91  Aligned_cols=136  Identities=17%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             CcceeEEEEEEEe--C-----CCeEEEeeecC-----CCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhH
Q 027303           41 NLLHRAFSVFLFN--S-----KYELLLQQRSG-----TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE  108 (225)
Q Consensus        41 ~~~h~~v~v~i~d--~-----~g~vLL~rRs~-----~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EE  108 (225)
                      ...|.+|.++++.  .     +++|||++|+.     .+..++|.|.+| ||++++||+         +++||+||++||
T Consensus        24 ~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lP-GG~ve~gEs---------~~~aa~REl~EE   93 (187)
T 3i9x_A           24 TPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVP-GGFVDENES---------AEQAAERELEEE   93 (187)
T ss_dssp             CCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECS-EEECCTTSC---------HHHHHHHHHHHH
T ss_pred             CcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECC-ceeCCCCCC---------HHHHHHHHHHHH
Confidence            3345666666543  2     36899999964     344678999999 999999999         899999999999


Q ss_pred             hCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc---cccCCccccccEEEeCHHHHHHHHHhccCCCCC
Q 027303          109 LGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV---SVNPNPDEVAEYKYVNREQLKELLRKADAGEEG  185 (225)
Q Consensus       109 tGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~---~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~  185 (225)
                      ||+.+..     +..++.+  ..+...... +.+..+|++....   ....+.+|+.+++|++++++.++          
T Consensus        94 tGl~~~~-----~~~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~----------  155 (187)
T 3i9x_A           94 TSLTDIP-----LIPFGVF--DKPGRDPRG-WIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALEL----------  155 (187)
T ss_dssp             HCCCSCC-----CEEEEEE--CCTTSSTTS-SEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTS----------
T ss_pred             HCCCCcc-----eEEEEEE--cCCccCCCC-CEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccC----------
Confidence            9998763     3445554  322211111 2233344333221   12234578899999999999754          


Q ss_pred             cccChhHHHHHHHHHHHHHh
Q 027303          186 LKLSPWFRLVVDNFLFKWWD  205 (225)
Q Consensus       186 ~~~~p~~~~~~~~~l~~~~~  205 (225)
                       .+.+..+.+++.++.....
T Consensus       156 -~l~~~~~~il~~a~~~l~~  174 (187)
T 3i9x_A          156 -PLAFDHLDMLKKAFSAITE  174 (187)
T ss_dssp             -CBSTTHHHHHHHHHHHHHH
T ss_pred             -CCCccHHHHHHHHHHHHHh
Confidence             3555666777776444433

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.72  E-value=1.5e-18  Score=131.86  Aligned_cols=119  Identities=16%  Similarity=0.212  Sum_probs=82.1

Q ss_pred             EEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEE
Q 027303           48 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI  127 (225)
Q Consensus        48 ~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~  127 (225)
                      .+++++.+|++||+||+..+ .++|.|++| ||++++||+         +.+||+||++||||+.+...     ..++.+
T Consensus         8 ~~ii~~~~~~vLl~~r~~~~-~~~g~w~~P-gG~~e~gE~---------~~~aa~RE~~EE~G~~~~~~-----~~~~~~   71 (129)
T 1mut_A            8 VGIIRNENNEIFITRRAADA-HMANKLEFP-GGKIEMGET---------PEQAVVRELQEEVGITPQHF-----SLFEKL   71 (129)
T ss_dssp             CEECEETTTEEEEEECSSCC-SSSCCEECC-CCCSSSCSS---------TTHHHHHHHHTTTCCSSCEE-----CCCCCC
T ss_pred             EEEEEecCCEEEEEEeCCCC-CCCCeEECC-ccCcCCCCC---------HHHHHHHHHHHHhCCccccc-----eEEEEE
Confidence            33455777999999998654 689999998 999999999         79999999999999997632     223333


Q ss_pred             EEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          128 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       128 ~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      .+..+.     .+...++|.+..... .++.+|+.+++|++++++.++           .+.|..+.+++.+
T Consensus        72 ~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~l  126 (129)
T 1mut_A           72 EYEFPD-----RHITLWFWLVERWEG-EPWGKEGQPGEWMSLVGLNAD-----------DFPPANEPVIAKL  126 (129)
T ss_dssp             BCCCSS-----CEEECCCEEEEECSS-CCCCCSSCCCEEEESSSCCTT-----------TSCTTCHHHHHHH
T ss_pred             EEecCC-----ceEEEEEEEEEccCC-ccCCcccceeEEeCHHHcccc-----------cCCchhHHHHHHH
Confidence            222111     122334555543221 234568889999999998764           4666666666654

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.72  E-value=5.1e-17  Score=126.65  Aligned_cols=109  Identities=14%  Similarity=0.219  Sum_probs=75.7

Q ss_pred             eEEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           45 RAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        45 ~~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +++++++++.+ +++||+||..     +|.|++| ||++++||+         +.+||+||++||||+.+..+     ..
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~~-----~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~   64 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGTE-----SDSWSFP-RGKISKDEN---------DIDCCIREVKEEIGFDLTDY-----ID   64 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCSS-----SSCCBCC-EECCCSSSC---------HHHHHHHHHHHHTSCCCSSS-----SC
T ss_pred             EEEEEEEEeCCCCEEEEEEEcC-----CCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCCchHh-----cc
Confidence            45677777765 8999998763     5899998 999999999         89999999999999998642     12


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec-C--ccccC-CccccccEEEeCHHHHHHHHHhc
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR-D--VSVNP-NPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~--~~~~~-~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +..+......      ....++|++.. .  ....+ +++|+.+++|++++++.+++...
T Consensus        65 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  118 (146)
T 2jvb_A           65 DNQFIERNIQ------GKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKS  118 (146)
T ss_dssp             SSCEEEEEET------TEEEEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCS
T ss_pred             cccccccccC------CceEEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhccc
Confidence            2233222111      11233444332 1  12222 36789999999999999987654

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.71  E-value=1.9e-16  Score=132.36  Aligned_cols=116  Identities=18%  Similarity=0.205  Sum_probs=81.1

Q ss_pred             eeEEEEEEEe-CCCeEEEeeecCCCC----CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           44 HRAFSVFLFN-SKYELLLQQRSGTKV----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        44 h~~v~v~i~d-~~g~vLL~rRs~~k~----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      +.+|++++++ .++++||.++.....    ..++.|++| ||++++||+         +++||+||++||||+.+.    
T Consensus        57 ~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welP-gG~ve~gE~---------~~~aA~REl~EEtGl~~~----  122 (209)
T 1g0s_A           57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVK----  122 (209)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCC----
T ss_pred             CCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeC-cccCCCCcC---------HHHHHHHHHHHHcCcccC----
Confidence            3678888888 468999865432211    126789998 999999999         799999999999999976    


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc----c--ccCCccccccEEEeCHHHHHHHHHhc
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~----~--~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                       .+.+++.+ |..+   +.. .+.+++|++..+.    .  ...+++|..++.|+|++++.+++..+
T Consensus       123 -~~~~l~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g  183 (209)
T 1g0s_A          123 -RTKPVLSF-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  183 (209)
T ss_dssp             -CEEEEEEE-ESCT---TTB-CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT
T ss_pred             -cEEEeEEE-ecCC---Ccc-CcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence             34566665 3332   222 3455667666421    1  23466788899999999999999886

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.70  E-value=1e-16  Score=128.82  Aligned_cols=114  Identities=17%  Similarity=0.189  Sum_probs=81.4

Q ss_pred             cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      .+|.++++++++.+|++||++|+.     +|.|++| ||++++||+         +.+||+||++||||+.+..     +
T Consensus         6 ~~~~~v~~~i~~~~~~vLl~~r~~-----~~~w~~p-~G~~e~gE~---------~~~aa~RE~~EE~G~~~~~-----~   65 (164)
T 2kdv_A            6 GYRPNVGIVICNRQGQVMWARRFG-----QHSWQFP-QGGINPGES---------AEQAMYRELFEEVGLSRKD-----V   65 (164)
T ss_dssp             SEEEEEEEEEECTTSEEEEEEETT-----CCCEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCGGG-----E
T ss_pred             CCCcEEEEEEEccCCEEEEEEEcC-----CCeEECC-eeecCCCCC---------HHHHHHHHHHHHHCCCccc-----e
Confidence            578899999999889999999873     6899999 999999999         8999999999999999763     2


Q ss_pred             eeeeEE----EEEcCCCC------CCcceEEEEEEEEecC---ccccCC---ccccccEEEeCHHHHHHH
Q 027303          122 TPLGRI----LYKAPSDG------KWGEHELDYLLFIVRD---VSVNPN---PDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       122 ~~l~~~----~y~~~~~~------~~~e~~~~~v~~~~~~---~~~~~~---~~Ev~~~~Wv~~eel~~~  175 (225)
                      ..++.+    .|..+...      ....+...++|.+...   ..+.++   ..|+.+++|++++++.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A           66 RILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             EEEEECSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred             EEEEEecceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhh
Confidence            334432    34444311      0111234455665532   223332   358999999999987654

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.70  E-value=5.4e-17  Score=130.06  Aligned_cols=124  Identities=14%  Similarity=0.129  Sum_probs=81.5

Q ss_pred             CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      ....+..+++++++ +|++||+||...    +|.|++| ||++++||+         +.+||+||++||||+.+..    
T Consensus        19 ~~~~~~~v~~ii~~-~~~vLL~~r~~~----~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~----   79 (171)
T 3id9_A           19 ENIMQVRVTGILIE-DEKVLLVKQKVA----NRDWSLP-GGRVENGET---------LEEAMIREMREETGLEVKI----   79 (171)
T ss_dssp             ---CEEEEEEEEEE-TTEEEEEECSST----TCCEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCEEE----
T ss_pred             CCceEEEEEEEEEE-CCEEEEEEEECC----CCeEECC-CccCCCCCC---------HHHHHHHHHHHHHCCcccc----
Confidence            34566777777777 589999998752    7999999 999999999         8999999999999999752    


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEec-Cccc-----cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-----NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR  193 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-----~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~  193 (225)
                       ...++.+.+.  ...   .+...++|.+.. .+..     .++++|+.+++|++++++.++           .+.|.++
T Consensus        80 -~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~-----------~~~~~~~  142 (171)
T 3id9_A           80 -KKLLYVCDKP--DAS---PSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYY-----------GFSETFI  142 (171)
T ss_dssp             -EEEEEEEEET--TSS---SCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGG-----------TCCTTCS
T ss_pred             -ceEEEEEccc--CCC---CcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhC-----------CCCHHHH
Confidence             2233333332  211   122333344432 2222     235688999999999999876           3556666


Q ss_pred             HHHHHH
Q 027303          194 LVVDNF  199 (225)
Q Consensus       194 ~~~~~~  199 (225)
                      .++++.
T Consensus       143 ~~l~~~  148 (171)
T 3id9_A          143 NLISGG  148 (171)
T ss_dssp             HHHHHG
T ss_pred             HHHHHh
Confidence            666665

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.70  E-value=6.9e-17  Score=132.73  Aligned_cols=125  Identities=14%  Similarity=0.178  Sum_probs=86.2

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      +++.+++.+ +|++||++|.     .+|.|.+| ||++++||+         +++||+||++||||+.+..     ...+
T Consensus         5 ~v~~~vi~~-~~~vLL~~r~-----~~g~W~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~~~   63 (188)
T 3fk9_A            5 RVTNCIVVD-HDQVLLLQKP-----RRGWWVAP-GGKMEAGES---------ILETVKREYWEETGITVKN-----PELK   63 (188)
T ss_dssp             EEEEEEEEE-TTEEEEEECT-----TTCCEECC-EEECCTTCC---------HHHHHHHHHHHHHSCEESS-----CEEE
T ss_pred             EEEEEEEEE-CCEEEEEEeC-----CCCeEECC-eecccCCCC---------HHHHHHHHHHHHHCCCCCC-----ceEE
Confidence            566666666 5899999885     37999999 999999999         8999999999999999873     2345


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      +.+.+.....+....+...++|.+.. .+.+. ...|..+++|++++++.++           .+.+..+.+++.++..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~-~~~e~~~~~W~~~~el~~~-----------~l~~~~~~~l~~~l~~  130 (188)
T 3fk9_A           64 GIFSMVIFDEGKIVSEWMLFTFKATEHEGEML-KQSPEGKLEWKKKDEVLEL-----------PMAAGDKWIFKHVLHS  130 (188)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEESCEESCCC-SEETTEEEEEEEGGGGGGS-----------CCCHHHHHHHHHHTTC
T ss_pred             EEEEEEecCCCcceEEEEEEEEEEECCCCCCc-CCCCCEeEEEEEHHHhhhC-----------CCCHHHHHHHHHHHcC
Confidence            55544433222211122446666653 23332 2345579999999998664           4667777777776543

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.69  E-value=1.4e-16  Score=123.37  Aligned_cols=108  Identities=16%  Similarity=0.116  Sum_probs=75.9

Q ss_pred             ceeEEEEEEEe--CCCe--EEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           43 LHRAFSVFLFN--SKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        43 ~h~~v~v~i~d--~~g~--vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      .+.++++++++  .+|+  +||+||+..    |+.|++| ||++++||+         +.+||+||++||||+.+..   
T Consensus         8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~---   70 (139)
T 2yyh_A            8 PLLATDVIIRLWDGENFKGIVLIERKYP----PVGLALP-GGFVEVGER---------VEEAAAREMREETGLEVRL---   70 (139)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCCEE---
T ss_pred             CeEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCCccc---
Confidence            34566666665  6788  999998742    4569998 999999999         8999999999999999762   


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHH
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLK  173 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~  173 (225)
                        ...++.+  ..+..+. ..+...++|.+...+.+. +++|+.+++|++++++.
T Consensus        71 --~~~~~~~--~~~~~~~-~~~~~~~~f~~~~~~~~~-~~~e~~~~~W~~~~el~  119 (139)
T 2yyh_A           71 --HKLMGVY--SDPERDP-RAHVVSVVWIGDAQGEPK-AGSDAKKVKVYRLEEIP  119 (139)
T ss_dssp             --EEEEEEE--CCTTSCT-TSCEEEEEEEEEEESCCC-CCTTEEEEEEECTTSCC
T ss_pred             --ceEEEEE--CCCCcCC-CceEEEEEEEEecCCccC-CCCCcceEEEEEHHHCC
Confidence              2334433  3222211 124455666665533333 45788999999999987

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.69  E-value=2.3e-17  Score=129.88  Aligned_cols=111  Identities=12%  Similarity=0.149  Sum_probs=77.3

Q ss_pred             CcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303           41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  120 (225)
Q Consensus        41 ~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~  120 (225)
                      ..+|.++++++++ +|++||++|       +|.|.+| ||++++||+         +.+||+||++||||+.+..     
T Consensus        16 ~~~~~~~~~ii~~-~~~vLl~~r-------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----   72 (154)
T 2pqv_A           16 TVFGVRATALIVQ-NHKLLVTKD-------KGKYYTI-GGAIQVNES---------TEDAVVREVKEELGVKAQA-----   72 (154)
T ss_dssp             EEEEEEEEECCEE-TTEEEEEEE-------TTEEECE-EEECBTTCC---------HHHHHHHHHHHHHCCCEEE-----
T ss_pred             ceEeEEEEEEEEE-CCEEEEEec-------CCeEECc-ccCcCCCCC---------HHHHHHHHHHHHhCCeeee-----
Confidence            4466777777776 589999998       5899998 999999999         7999999999999999763     


Q ss_pred             eeeeeEEEEEcCCCCCCcceEEEEEEEEecCc-ccc--CCccccccEEEeCHHHHHHH
Q 027303          121 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVN--PNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~--~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ...++.+.+..+.. +...+.+.++|.+.... ...  .+++|+.+++|++++++.++
T Consensus        73 ~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           73 GQLAFVVENRFEVD-GVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEEEEEEEEEET-TEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGS
T ss_pred             ceEEEEEeeeecCC-CCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhc
Confidence            22333333222211 11223445566665422 211  23467889999999999875

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.69  E-value=6.4e-16  Score=127.66  Aligned_cols=127  Identities=17%  Similarity=0.269  Sum_probs=81.3

Q ss_pred             eeEEEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           44 HRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        44 h~~v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      +.+|.+++++. ++++||+||..   .++|.|.+| ||++++||+         +++||+||++||||+.+...     .
T Consensus        26 ~v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lP-GG~ve~gEs---------~~~aA~REl~EEtGl~~~~~-----~   87 (199)
T 3h95_A           26 QVGVAGAVFDESTRKILVVQDRN---KLKNMWKFP-GGLSEPEED---------IGDTAVREVFEETGIKSEFR-----S   87 (199)
T ss_dssp             CCEEEEEEEETTTTEEEEEEESS---SSTTSBBCC-EEECCTTCC---------HHHHHHHHHHHHHCCCEEEE-----E
T ss_pred             cceEEEEEEeCCCCEEEEEEEcC---CCCCCEECC-ccccCCCCC---------HHHHHHHHHHHHhCCccccc-----e
Confidence            35566666664 48999998864   258999999 999999999         89999999999999997621     1


Q ss_pred             eeeEE-EEEcCCCCCCcceEEEEEEEEe--c-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303          123 PLGRI-LYKAPSDGKWGEHELDYLLFIV--R-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN  198 (225)
Q Consensus       123 ~l~~~-~y~~~~~~~~~e~~~~~v~~~~--~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~  198 (225)
                      .++.. .+..+  +...  ....+|++.  . ...+.++++|+.+++|++++++.++.          ...|....++..
T Consensus        88 l~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~----------~~~~~~~~~~~~  153 (199)
T 3h95_A           88 VLSIRQQHTNP--GAFG--KSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTE----------NTTPITSRVARL  153 (199)
T ss_dssp             EEEEEECC-------------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCS----------SBCHHHHHHHHH
T ss_pred             EEEEEeeecCC--CCce--eEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhh----------hcChHHHHHHHH
Confidence            22211 11211  1111  111222222  2 33456678899999999999999863          234445555555


Q ss_pred             HHHH
Q 027303          199 FLFK  202 (225)
Q Consensus       199 ~l~~  202 (225)
                      ++.+
T Consensus       154 ~~~~  157 (199)
T 3h95_A          154 LLYG  157 (199)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5443

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=134.95  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=81.1

Q ss_pred             ceeEEEEEEEeC-CCeEEEeeecCCC------------------------------CCCCCCeeeccccCCCC-CCChhh
Q 027303           43 LHRAFSVFLFNS-KYELLLQQRSGTK------------------------------VTFPLVWTNTCCSHPLY-RESELI   90 (225)
Q Consensus        43 ~h~~v~v~i~d~-~g~vLL~rRs~~k------------------------------~~~pg~W~~p~gG~ve~-gEs~~~   90 (225)
                      .|.+|++++++. ++++||+|+....                              ...++.|++| ||++++ ||+   
T Consensus        35 ~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welP-gG~ve~~gEs---  110 (218)
T 3q91_A           35 THDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELC-AGLVDQPGLS---  110 (218)
T ss_dssp             CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECE-EEECCSSSCC---
T ss_pred             cCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECC-cceeCCCCCC---
Confidence            367899999984 5788887643211                              0116899999 999999 999   


Q ss_pred             hhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-------ccccCCcccccc
Q 027303           91 EENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-------VSVNPNPDEVAE  163 (225)
Q Consensus        91 ~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-------~~~~~~~~Ev~~  163 (225)
                            +++||+||++||||+.+.   ...+..++.+.. .+   +.. ...+++|.+...       ....++++|+.+
T Consensus       111 ------~~eaA~REl~EEtGl~~~---~~~l~~l~~~~~-~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~e  176 (218)
T 3q91_A          111 ------LEEVACKEAWEECGYHLA---PSDLRRVATYWS-GV---GLT-GSRQTMFYTEVTDAQRSGPGGGLVEEGELIE  176 (218)
T ss_dssp             ------HHHHHHHHHHHHHCBCCC---GGGCEEEEEEEE-C------C-CEEEEEEEEEECGGGBCC---------CCEE
T ss_pred             ------HHHHHHHHHHHHhCCccc---cCceEEEEEEec-CC---Ccc-ceEEEEEEEEECCcccccCCCCCCCCCcEEE
Confidence                  899999999999999983   224566766532 22   112 344566666532       124466789999


Q ss_pred             EEEeCHHHHHHHHHhcc
Q 027303          164 YKYVNREQLKELLRKAD  180 (225)
Q Consensus       164 ~~Wv~~eel~~~~~~~~  180 (225)
                      +.|+|++++.+++..+.
T Consensus       177 v~wv~l~el~~~i~~g~  193 (218)
T 3q91_A          177 VVHLPLEGAQAFADDPD  193 (218)
T ss_dssp             EEEEEGGGHHHHHHCTT
T ss_pred             EEEEEHHHHHHHHHcCC
Confidence            99999999999999863

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.68  E-value=5.4e-17  Score=135.09  Aligned_cols=111  Identities=13%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      .+.++.+++++ +|++||+||+.     +|.|.+| ||++++||+         +.+||+||++||||+.+..     ..
T Consensus        67 ~~~~v~~vv~~-~~~vLLv~r~~-----~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~v~~-----~~  125 (205)
T 3q1p_A           67 PKVDIRAVVFQ-NEKLLFVKEKS-----DGKWALP-GGWADVGYT---------PTEVAAKEVFEETGYEVDH-----FK  125 (205)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEC--------CCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EE
T ss_pred             CcceEEEEEEE-CCEEEEEEEcC-----CCcEECC-cCccCCCCC---------HHHHHHHHHHHHHCCcccc-----ce
Confidence            45677778887 68999999862     6899998 999999999         8999999999999999762     23


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .++.+.+..........+.+.++|.+.. .+.+..+ .|+.+++|++++++.++
T Consensus       126 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l  178 (205)
T 3q1p_A          126 LLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTS-IETEEVEFFGENELPNL  178 (205)
T ss_dssp             EEEEEEHHHHSCCCCSSCEEEEEEEEEEEEECCCCC-TTSCCEEEECTTSCCCB
T ss_pred             EEEEEeccccCCCCCCceEEEEEEEEEecCCccCCC-CcceEEEEEeHHHhhhc
Confidence            3444332211111112244445555554 3344444 78999999999999765

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.67  E-value=3.1e-16  Score=128.56  Aligned_cols=125  Identities=12%  Similarity=0.011  Sum_probs=87.5

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      ..++.+++++ +|++||++|....  .+|.|++| ||++++||+         +++||+||++||||+.+...     ..
T Consensus        40 ~~~v~~ii~~-~~~vLL~~r~~~~--~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~  101 (189)
T 3cng_A           40 KVIVGCIPEW-ENKVLLCKRAIAP--YRGKWTLP-AGFMENNET---------LVQGAARETLEEANARVEIR-----EL  101 (189)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSS--STTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCEEEE-----EE
T ss_pred             ceEEEEEEEe-CCEEEEEEccCCC--CCCeEECc-eeeccCCCC---------HHHHHHHHHHHHHCCccccc-----ee
Confidence            4567777777 6899999997543  38999999 999999999         89999999999999997621     22


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      ++.+.+  +.     .+...++|.+... ..+. ..+|+.+++|++++++...          ....|.....+.+|+..
T Consensus       102 ~~~~~~--~~-----~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~~----------~l~~~~~~~~l~~~l~~  163 (189)
T 3cng_A          102 YAVYSL--PH-----ISQVYMLFRAKLLDLDFF-PGIESLEVRLFGEQEIPWN----------DIAFRVIHDPLKRYMEE  163 (189)
T ss_dssp             EEEEEE--GG-----GTEEEEEEEEEECCSCCC-CCTTEEEEEEECTTTCCGG----------GBSCHHHHHHHHHHHHH
T ss_pred             EEEEec--CC-----CcEEEEEEEEEeCCCccC-CCccceeEEEECHHHcCcc----------cccChHHHHHHHHHHHh
Confidence            333222  21     1345566666543 3333 3578899999999998621          12356677777777665


Q ss_pred             HH
Q 027303          203 WW  204 (225)
Q Consensus       203 ~~  204 (225)
                      ..
T Consensus       164 ~~  165 (189)
T 3cng_A          164 RH  165 (189)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.66  E-value=3.8e-16  Score=129.32  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=73.6

Q ss_pred             eeEEEEEE-EeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           44 HRAFSVFL-FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        44 h~~v~v~i-~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      ++++++++ .+.++++||+||..    .||.|++| ||++++||+         +++||+||++||||+.+..     ..
T Consensus        41 ~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lP-gG~ve~gEt---------~~eaa~REl~EEtGl~~~~-----~~  101 (194)
T 2fvv_A           41 KRAACLCFRSESEEEVLLVSSSR----HPDRWIVP-GGGMEPEEE---------PSVAAVREVCEEAGVKGTL-----GR  101 (194)
T ss_dssp             EEEEEEEESSTTCCEEEEEECSS----CTTSEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEE-----EE
T ss_pred             ccEEEEEEEECCCCEEEEEEEeC----CCCcEECC-CCcCCCCcC---------HHHHHHHHHHHHhCCcccc-----ce
Confidence            44444444 24568999999863    36999999 999999999         8999999999999999762     34


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEecCcccc---CCccccccEEEeCHHHHHHHHHh
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN---PNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~---~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      .++.+.+.  ..     ....++|.+.......   .+..+..+++|++++++.+++..
T Consensus       102 ~l~~~~~~--~~-----~~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~  153 (194)
T 2fvv_A          102 LVGIFENQ--ER-----KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY  153 (194)
T ss_dssp             EEEEEEET--TT-----TEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred             EEEEEEcC--CC-----ceEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhc
Confidence            55555431  11     1234455444322111   11224578999999999998755

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.66  E-value=2.1e-16  Score=131.11  Aligned_cols=113  Identities=19%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .+|++++++.+ ++||++|... ...+|.|++| ||++++||+         +++||+||++||||+.+.     .+..+
T Consensus        50 ~av~vl~~~~~-~vLLvrq~r~-~~~~~~welP-gG~ve~gEs---------~~~aA~REl~EEtGl~~~-----~~~~l  112 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREYAV-GTESYELGFS-KGLIDPGES---------VYEAANRELKEEVGFGAN-----DLTFL  112 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEEET-TTTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHSEEEE-----EEEEE
T ss_pred             CEEEEEEEECC-EEEEEEcccC-CCCCcEEEeC-cccCCCCcC---------HHHHHHHHHHHHHCCCcC-----ceEEE
Confidence            46777778765 9999877533 2457899998 999999999         899999999999999976     24556


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +.+.+ .+   +.. ...+++|.+..  ......+++|..++.|++++++.+++..+
T Consensus       113 ~~~~~-~~---~~~-~~~~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  164 (198)
T 1vhz_A          113 KKLSM-AP---SYF-SSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDP  164 (198)
T ss_dssp             EEEEC-CT---TTC-CCEEEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             EEEeC-CC---Ccc-CcEEEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            65532 22   112 23445565553  22344567889999999999999998775

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.66  E-value=7.7e-16  Score=128.15  Aligned_cols=114  Identities=11%  Similarity=0.093  Sum_probs=78.5

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCC-CCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPL-YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve-~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      .+|++++++.+|++||++|.... .++|.|++| ||+++ .||+         +++||+||++||||+.+..     +.+
T Consensus        44 ~av~v~i~~~~~~vLLvrr~r~~-~~~~~w~lP-gG~ve~~gEs---------~~~aa~REl~EEtGl~~~~-----~~~  107 (207)
T 1mk1_A           44 GAVAIVAMDDNGNIPMVYQYRHT-YGRRLWELP-AGLLDVAGEP---------PHLTAARELREEVGLQAST-----WQV  107 (207)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETT-TTEEEEECC-EEECCSTTCC---------HHHHHHHHHHHHHCEEEEE-----EEE
T ss_pred             CEEEEEEEcCCCEEEEEEeecCC-CCCcEEEeC-CccccCCCCC---------HHHHHHHHHHHHHCCcccc-----cEE
Confidence            57788888888999998876443 467899999 99999 9999         8999999999999999763     344


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec-Cccc---cCCccccccEEEeCHHHHHHHHHhc
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV---NPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~---~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      ++.+ |..+   +.. .+.+++|.+.. ....   ..+++|+.+++|++++++.+++..+
T Consensus       108 l~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~  162 (207)
T 1mk1_A          108 LVDL-DTAP---GFS-DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRG  162 (207)
T ss_dssp             EEEE-CSCT---TTB-CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHTT
T ss_pred             EEEE-EcCC---Ccc-ccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            5544 3222   222 22345565543 2111   1456889999999999999999875

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.66  E-value=1.3e-15  Score=135.48  Aligned_cols=136  Identities=12%  Similarity=0.135  Sum_probs=92.6

Q ss_pred             cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      ..+.++.+++++ +|++||+||....  .+|.|++| ||++++||+         +++||+||++||||+++....+.. 
T Consensus       206 ~~~~~v~~vv~~-~~~vLL~~r~~~~--~~g~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~v~~~~~~~-  271 (352)
T 2qjt_B          206 PNFVTVDALVIV-NDHILMVQRKAHP--GKDLWALP-GGFLECDET---------IAQAIIRELFEETNINLTHEQLAI-  271 (352)
T ss_dssp             CEEEEEEEEEEE-TTEEEEEEESSSS--STTCEECS-EEECCTTSC---------HHHHHHHHHHHHHCCSCCHHHHHH-
T ss_pred             CCceEEEEEEEE-CCEEEEEEEcCCC--CCCeEECC-CCcCCCCCC---------HHHHHHHHHHHhhCCCcccchhcc-
Confidence            456777888774 6899999997543  47999998 999999999         899999999999999976321100 


Q ss_pred             eeeeEEEEEcCCCCCCcceEEEEEEEEec-Ccc--cc-CCccccccEEEeCH-HHHHHHHHhccCCCCCcccChhHHHHH
Q 027303          122 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVS--VN-PNPDEVAEYKYVNR-EQLKELLRKADAGEEGLKLSPWFRLVV  196 (225)
Q Consensus       122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~--~~-~~~~Ev~~~~Wv~~-eel~~~~~~~~~~~~~~~~~p~~~~~~  196 (225)
                      .+.....|..+..... .+...++|.+.. .+.  +. .+++|+.+++|+++ +++.++         +..+.|..+.++
T Consensus       272 ~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~---------~~~~~~~~~~il  341 (352)
T 2qjt_B          272 AKRCEKVFDYPDRSVR-GRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNI---------CDRMLEDHYQII  341 (352)
T ss_dssp             HEEEEEEECCTTSCTT-SEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHT---------TTSBSTTHHHHH
T ss_pred             eeeeeEEecCCCCCCC-ccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhh---------hhhhChhHHHHH
Confidence            0112233443332211 133445555443 222  22 24688999999999 999885         336788888888


Q ss_pred             HHHHH
Q 027303          197 DNFLF  201 (225)
Q Consensus       197 ~~~l~  201 (225)
                      ++++.
T Consensus       342 ~~~~~  346 (352)
T 2qjt_B          342 TILLE  346 (352)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88854

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.66  E-value=5.2e-16  Score=132.62  Aligned_cols=138  Identities=13%  Similarity=0.096  Sum_probs=91.4

Q ss_pred             ceeEEEEEEE---eCCCeEEEeeecCCCCCCCCCeeeccccCCCC--CCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC
Q 027303           43 LHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY--RESELIEENALGVRNAAQRKLLDELGICAEDVP  117 (225)
Q Consensus        43 ~h~~v~v~i~---d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~--gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~  117 (225)
                      .+.+|.++|+   +.+++|||++|+.  ..++|.|.+| ||++++  |||         +.+||+||++||||+.+..  
T Consensus        21 p~v~v~~vi~~~~~~~~~vLLv~R~~--~~~~g~W~lP-GG~ve~~~gEs---------~~~AA~REl~EEtGl~~~~--   86 (240)
T 3gz5_A           21 QLLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLP-GGFIDETCDES---------LEQTVLRKLAEKTAVVPPY--   86 (240)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEECCS--SSSTTCEECS-EEECCTTTCSB---------HHHHHHHHHHHHHSSCCSE--
T ss_pred             CccEEEEEEEEEeCCCcEEEEEECcC--CCCCCCEECC-ccccCCCCCcC---------HHHHHHHHHHHHHCCCCCc--
Confidence            3466666666   4446999999984  3468999999 999999  999         8999999999999998752  


Q ss_pred             CCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303          118 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV  196 (225)
Q Consensus       118 ~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~  196 (225)
                         +..++++........+   +.+..+|.+... .....+.+|+.+++|++++++.+.           .+..-.+.++
T Consensus        87 ---~~~l~~~~~~~r~~~~---~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~-----------~l~~dh~~il  149 (240)
T 3gz5_A           87 ---IEQLCTVGNNSRDARG---WSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQM-----------PLAFDHLQLI  149 (240)
T ss_dssp             ---EEEEEEEEESSSSTTS---CEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTS-----------CCSTTHHHHH
T ss_pred             ---eeeEEEeCCCccCCCc---eEEEEEEEEEecccccCCCCCcccceEEecHHHcccC-----------CcchhHHHHH
Confidence               4456665443222222   334455555543 223334678899999999998532           2333345555


Q ss_pred             HHHHHHHHhhhcccc
Q 027303          197 DNFLFKWWDHLEKGT  211 (225)
Q Consensus       197 ~~~l~~~~~~~~~~~  211 (225)
                      +..+......+++..
T Consensus       150 ~~a~~rlr~kl~y~~  164 (240)
T 3gz5_A          150 EQARERLTQKALYSL  164 (240)
T ss_dssp             HHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhcccCc
Confidence            555555555555543

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.66  E-value=8.2e-16  Score=126.57  Aligned_cols=115  Identities=15%  Similarity=0.121  Sum_probs=80.8

Q ss_pred             ceeEEEEEEEeC-CCeEEEeeecCCC----CC-CCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCC
Q 027303           43 LHRAFSVFLFNS-KYELLLQQRSGTK----VT-FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  116 (225)
Q Consensus        43 ~h~~v~v~i~d~-~g~vLL~rRs~~k----~~-~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i  116 (225)
                      .|.++++++++. ++++||.++....    .. .++.|++| ||+++ ||+         +++||+||++||||+.+.  
T Consensus        44 ~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lP-gG~ve-gE~---------~~~aa~REl~EEtG~~~~--  110 (191)
T 3o6z_A           44 RGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESC-AGLLD-NDE---------PEVCIRKEAIEETGYEVG--  110 (191)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECE-EEECC-SSC---------HHHHHHHHHHHHC-CCCS--
T ss_pred             cCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEec-ceEeC-CCC---------HHHHHHHHHHHHhCCccC--
Confidence            356788888885 5899998765311    11 57899999 99999 999         899999999999999975  


Q ss_pred             CCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCcc------ccCCccccccEEEeCHHHHHHHHHhc
Q 027303          117 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS------VNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       117 ~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~------~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                         .+.+++.+ |..+   +.. ...+++|.+.....      ... ++|+.+++|+|++++.+++..+
T Consensus       111 ---~~~~l~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~~g  170 (191)
T 3o6z_A          111 ---EVRKLFEL-YMSP---GGV-TELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEMIKTG  170 (191)
T ss_dssp             ---CEEEEEEE-ESCT---TTB-CCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHHHHS
T ss_pred             ---cEEEEEEE-EeCC---Ccc-CcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHHHHcC
Confidence               34566654 3222   122 33456666664211      122 6889999999999999999986

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.66  E-value=1e-16  Score=133.51  Aligned_cols=123  Identities=14%  Similarity=0.126  Sum_probs=82.6

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      .+.++.+++++. |++||+||+      +|.|.+| ||++++||+         +.+||+||++||||+.+..     ..
T Consensus        69 ~~~~v~~vv~~~-~~vLLvrr~------~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~  126 (206)
T 3o8s_A           69 PKLDTRAAIFQE-DKILLVQEN------DGLWSLP-GGWCDVDQS---------VKDNVVKEVKEEAGLDVEA-----QR  126 (206)
T ss_dssp             CEEEEEEEEEET-TEEEEEECT------TSCEECS-EEECCTTSC---------HHHHHHHHHHHHHCEEEEE-----EE
T ss_pred             CCccEEEEEEEC-CEEEEEEec------CCeEECC-eeccCCCCC---------HHHHHHHHHHHHHCCccee-----ee
Confidence            346677777774 899999987      6899999 999999999         8999999999999999763     23


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      .++.+.+..........+...++|.+.. .+.+..+ .|+.+++|++++++.++           .+.+.++..+..+
T Consensus       127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l-----------~~~~~~~~~l~~~  192 (206)
T 3o8s_A          127 VVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPN-SETVASGFFSLDDLPPL-----------YLGKNTAEQLALC  192 (206)
T ss_dssp             EEEEEEHHHHCC-----CEEEEEEEEEEEEECCCCC-SSCSEEEEECTTSCCCB-----------CTTTCCHHHHHHH
T ss_pred             EEEEEeccccCCCCCCceEEEEEEEEEecCCeecCC-CCceEEEEEeHHHhhhc-----------cCCCchHHHHHHH
Confidence            4444432111111111233344555543 3334443 78999999999999765           3445555555555

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.65  E-value=2.6e-16  Score=133.31  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=79.5

Q ss_pred             cceeEEEEEEE---eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           42 LLHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        42 ~~h~~v~v~i~---d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      ..+.+|.++|+   +.++++||++|...  .++|.|.+| ||++++|||         +++||+||++||||+.+..   
T Consensus        11 ~p~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lP-GG~ve~gEs---------~~~Aa~REl~EEtGl~~~~---   75 (226)
T 2fb1_A           11 TFYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLM-GGFVQKDES---------VDDAAKRVLAELTGLENVY---   75 (226)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECE-EEECCTTSC---------HHHHHHHHHHHHHCCCSCE---
T ss_pred             CCeEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECC-eeccCCCCC---------HHHHHHHHHHHHHCCCCCc---
Confidence            35677788877   45679999999753  468999999 999999999         8999999999999999762   


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHH
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKE  174 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~  174 (225)
                        +..++++.  .+.... ..+.+..+|.+... .....+++|+.+++|++++++.+
T Consensus        76 --~~~l~~~~--~~~r~~-~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~  127 (226)
T 2fb1_A           76 --MEQVGAFG--AIDRDP-GERVVSIAYYALININEYDRELVQKHNAYWVNINELPA  127 (226)
T ss_dssp             --EEEEEEEC--CTTSSS-SSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC
T ss_pred             --eEEEEEeC--CCCcCC-CceEEEEEEEEEecCcccccCCccccceEEEEHHHhhh
Confidence              34455442  222111 11334445555543 22223457889999999999864

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.65  E-value=3.5e-16  Score=123.94  Aligned_cols=123  Identities=16%  Similarity=0.145  Sum_probs=80.4

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc-eee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE-FTP  123 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~-l~~  123 (225)
                      .++++++++ +|++||++|+.     +|.|.+| ||++++||+         +.+||+||++||||+.+.....-. +..
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~-----~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~~~   65 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR-----LGVYIYP-GGHVEHNET---------PIEAVKREFEEETGIVVEPIGFTYGIID   65 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT-----TCSEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEECCCCCCCBS
T ss_pred             eEEEEEEEE-CCEEEEEEEcC-----CCcEECC-eeecCCCCC---------HHHHHHHHHHHHHCCcceeccceeeecc
Confidence            356777777 79999998863     6899999 999999999         899999999999999986432200 000


Q ss_pred             ----------eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303          124 ----------LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR  193 (225)
Q Consensus       124 ----------l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~  193 (225)
                                .....+.. ..+. ....+..+|.+..      ..+|..+++|++++++.++           .+.|..+
T Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~f~~~~------~~~e~~~~~W~~~~el~~~-----------~~~~~~~  126 (156)
T 1k2e_A           66 ENAVERPMPLVILEEVVK-YPEE-THIHFDLIYLVKR------VGGDLKNGEWIDVREIDRI-----------ETFPNVR  126 (156)
T ss_dssp             SSEEECCCCSEEEEEEEE-CSSC-EEEEEEEEEEEEE------EEECCCSCEEEEGGGGGGS-----------CBSTTHH
T ss_pred             cccccccccceeeeeeec-CCCC-ceEEEEEEEEEEe------cCCcEeeeEEeCHHHHhcC-----------CCChHHH
Confidence                      00000000 1111 1122333454442      2356889999999999753           4667777


Q ss_pred             HHHHHHHHH
Q 027303          194 LVVDNFLFK  202 (225)
Q Consensus       194 ~~~~~~l~~  202 (225)
                      .+++.++..
T Consensus       127 ~~l~~~~~~  135 (156)
T 1k2e_A          127 KVVSLALST  135 (156)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777543

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.65  E-value=1.4e-15  Score=134.32  Aligned_cols=136  Identities=10%  Similarity=0.042  Sum_probs=86.6

Q ss_pred             cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      ..+.++.+++++ +|++||+||+..  ..+|.|++| ||++++||+         +++||+||++||||+.+....+.. 
T Consensus       201 ~~~~~v~~vi~~-~~~vLL~~r~~~--~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~-  266 (341)
T 2qjo_A          201 PTFITTDAVVVQ-AGHVLMVRRQAK--PGLGLIALP-GGFIKQNET---------LVEGMLRELKEETRLKVPLPVLRG-  266 (341)
T ss_dssp             CCEEEEEEEEEE-TTEEEEEECCSS--SSTTCEECS-EEECCTTSC---------HHHHHHHHHHHHHCCSSCHHHHHH-
T ss_pred             CCceEEEEEEEe-CCEEEEEEecCC--CCCCeEECC-CCcCCCCCC---------HHHHHHHHHhhhhCCccccccccc-
Confidence            346677777775 689999998753  348999998 999999999         899999999999999976321100 


Q ss_pred             eeeeEEEEEcCCCCCCcceEEEEEEEEecC-ccc--cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303          122 TPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSV--NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN  198 (225)
Q Consensus       122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~--~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~  198 (225)
                      .......|..+..... .+...++|.+... +..  ..+++|+.+++|++++++.++         +..+.+..+.++++
T Consensus       267 ~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~---------~~~~~~~~~~il~~  336 (341)
T 2qjo_A          267 SIVDSHVFDAPGRSLR-GRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQ---------EEQIYEDHFQIIQH  336 (341)
T ss_dssp             TEEEEEEECCTTSCTT-SCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHT---------GGGBCTTHHHHHHH
T ss_pred             cccceEEEeCCCCCCC-CcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhh---------hhhhchHHHHHHHH
Confidence            0011223333322111 1344555655542 221  245688999999999999885         23577778888887


Q ss_pred             HHH
Q 027303          199 FLF  201 (225)
Q Consensus       199 ~l~  201 (225)
                      ++.
T Consensus       337 ~~~  339 (341)
T 2qjo_A          337 FVS  339 (341)
T ss_dssp             HC-
T ss_pred             HHh
Confidence            754

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.65  E-value=5.8e-16  Score=134.83  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=77.6

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .++.++ ++.++++||.||+...   +|.|++| ||++++|||         +++||+||++||||+++..     +.++
T Consensus       141 ~~viv~-v~~~~~vLL~rr~~~~---~g~w~lP-gG~vE~GEt---------~eeAa~REv~EEtGl~v~~-----~~~~  201 (269)
T 1vk6_A          141 PCIIVA-IRRDDSILLAQHTRHR---NGVHTVL-AGFVEVGET---------LEQAVAREVMEESGIKVKN-----LRYV  201 (269)
T ss_dssp             EEEEEE-EEETTEEEEEEETTTC---SSCCBCE-EEECCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEE
T ss_pred             cEEEEE-EEeCCEEEEEEecCCC---CCcEECC-cCcCCCCCC---------HHHHHHHHHHHHhCceeee-----EEEE
Confidence            344443 4456899999987542   6999998 999999999         8999999999999999763     4556


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKE  174 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~  174 (225)
                      +.+.+..+       +...++|.+.. +..+.++++|+.+++|++++++.+
T Consensus       202 ~~~~~~~~-------~~~~~~f~a~~~~~~~~~~~~E~~~~~W~~~~el~~  245 (269)
T 1vk6_A          202 TSQPWPFP-------QSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL  245 (269)
T ss_dssp             EEEEEETT-------EEEEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCS
T ss_pred             EEEecCCC-------CEEEEEEEEEECCCCcCCCCcceEEEEEEEHHHhhh
Confidence            66655432       33445565553 345566678999999999999865

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.64  E-value=6.6e-16  Score=124.41  Aligned_cols=115  Identities=13%  Similarity=0.097  Sum_probs=77.8

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      ...++++++. .+|++||.+|+      +|.|.+| ||++++||+         +.+||+||++||||+.+..     +.
T Consensus        15 ~~~~~~~ii~-~~~~vLL~~r~------~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~   72 (163)
T 3f13_A           15 LARRATAIIE-MPDGVLVTASR------GGRYNLP-GGKANRGEL---------RSQALIREIREETGLRINS-----ML   72 (163)
T ss_dssp             CEEEEEEECE-ETTEEEEEECC---------BBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCE-----EE
T ss_pred             ceEEEEEEEE-eCCEEEEEEEC------CCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCcccce-----eE
Confidence            3444444444 45889998875      5899999 999999999         8999999999999999763     33


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      .++.+  ..+.       ...++|.+..++.+.++ +|+.+++|++.+..            +..+.+..+.+++.|+.
T Consensus        73 ~l~~~--~~~~-------~~~~~f~~~~~~~~~~~-~E~~~~~W~~~~~~------------~~~l~~~~~~il~~~~~  129 (163)
T 3f13_A           73 YLFDH--ITPF-------NAHKVYLCIAQGQPKPQ-NEIERIALVSSPDT------------DMDLFVEGRAILRRYAR  129 (163)
T ss_dssp             EEEEE--ECSS-------EEEEEEEEEC-CCCCCC-TTCCEEEEESSTTC------------SSCBCHHHHHHHHHHHH
T ss_pred             EEEEE--ecCC-------eEEEEEEEEECCcCccC-CCceEEEEECcccc------------cCCCCHHHHHHHHHHHH
Confidence            44433  3221       34456666655555555 48999999993221            23677777777777754

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.58  E-value=6.5e-15  Score=133.19  Aligned_cols=130  Identities=9%  Similarity=0.014  Sum_probs=91.3

Q ss_pred             hhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCC
Q 027303           34 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA  113 (225)
Q Consensus        34 ~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~  113 (225)
                      +++.++......++.+++.|.+|++||+||+.. ..++|.|+|| ||+++.| +         +++|+.||++||||+.+
T Consensus       230 vK~~kk~~~~~~~~~~vi~~~~g~vLL~rR~~~-g~~~GlWefP-GG~ve~g-t---------~~~al~REl~EE~Gl~v  297 (369)
T 3fsp_A          230 VKMKKTAVKQVPLAVAVLADDEGRVLIRKRDST-GLLANLWEFP-SCETDGA-D---------GKEKLEQMVGEQYGLQV  297 (369)
T ss_dssp             CCCCCCCCEEEEEEEEEEECSSSEEEEEECCSS-STTTTCEECC-EEECSSS-C---------THHHHHHHHTTSSSCCE
T ss_pred             ccccccCcceEEEEEEEEEeCCCEEEEEECCCC-CCcCCcccCC-CcccCCC-C---------cHHHHHHHHHHHhCCce
Confidence            333333333455666777778899999999854 4689999999 9999999 8         69999999999999998


Q ss_pred             CCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303          114 EDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR  193 (225)
Q Consensus       114 ~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~  193 (225)
                      ....     .++.+.+..+.     .+...++|.+.....    ..|..+++|++++++.++           .+.+..+
T Consensus       298 ~~~~-----~l~~~~h~~~h-----~~~~~~~~~~~~~~~----~~e~~~~~Wv~~~el~~~-----------~l~~~~~  352 (369)
T 3fsp_A          298 ELTE-----PIVSFEHAFSH-----LVWQLTVFPGRLVHG----GPVEEPYRLAPEDELKAY-----------AFPVSHQ  352 (369)
T ss_dssp             EECC-----CCCEEEEECSS-----EEEEEEEEEEEECCS----SCCCTTEEEEEGGGGGGS-----------CCCHHHH
T ss_pred             eeec-----ccccEEEEcce-----EEEEEEEEEEEEcCC----CCCccccEEeeHHHhhhC-----------CCCHHHH
Confidence            6432     34555444321     122334555554322    357789999999999764           5777777


Q ss_pred             HHHHHHH
Q 027303          194 LVVDNFL  200 (225)
Q Consensus       194 ~~~~~~l  200 (225)
                      .+++.+.
T Consensus       353 ~il~~l~  359 (369)
T 3fsp_A          353 RVWREYK  359 (369)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777764

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.57  E-value=8.5e-15  Score=127.41  Aligned_cols=134  Identities=11%  Similarity=0.053  Sum_probs=81.7

Q ss_pred             eEEEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           45 RAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        45 ~~v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      .++++++++. +|++||++|..    .+|.|.+| ||++++||+         +++||+||++||||+.+..+.     .
T Consensus       102 ~~v~avv~~~~~~~vLLv~r~~----~~g~W~lP-gG~ve~gEs---------~~eAA~REl~EEtGl~~~~l~-----~  162 (271)
T 2a6t_A          102 PVRGAIMLDMSMQQCVLVKGWK----ASSGWGFP-KGKIDKDES---------DVDCAIREVYEETGFDCSSRI-----N  162 (271)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESS----TTCCCBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCTTTC-----C
T ss_pred             CeEEEEEEECCCCEEEEEEEeC----CCCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCceeee-----e
Confidence            4667777775 48999999864    36899999 999999999         899999999999999987431     1


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecC---ccccC-CccccccEEEeCHHHHHHHHHhccCCC--CCcccChhHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNP-NPDEVAEYKYVNREQLKELLRKADAGE--EGLKLSPWFRLVVD  197 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~---~~~~~-~~~Ev~~~~Wv~~eel~~~~~~~~~~~--~~~~~~p~~~~~~~  197 (225)
                      +..  |..+..   . ...+++|++...   ....+ +++|+.+++|++++++.++...+....  ......|+ ...+.
T Consensus       163 ~~~--~~~~~~---~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~p~-~~~L~  235 (271)
T 2a6t_A          163 PNE--FIDMTI---R-GQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIPF-LAPLK  235 (271)
T ss_dssp             TTC--EEEEEE---T-TEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC------CCGGGTTTGGG-HHHHH
T ss_pred             eee--eccCCc---C-CceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcCccccccchhhhhHH-HHHHH
Confidence            221  221110   1 223455555431   22232 567899999999999988654431100  01112344 55666


Q ss_pred             HHHHHHH
Q 027303          198 NFLFKWW  204 (225)
Q Consensus       198 ~~l~~~~  204 (225)
                      +||..-.
T Consensus       236 ~wl~~~~  242 (271)
T 2a6t_A          236 KWIKKRN  242 (271)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            7766543

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.56  E-value=6.9e-15  Score=122.79  Aligned_cols=114  Identities=14%  Similarity=0.043  Sum_probs=75.9

Q ss_pred             eeEEEEEEE--eC--CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           44 HRAFSVFLF--NS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        44 h~~v~v~i~--d~--~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      +.+|+++.+  +.  ++++||.++... ...++.|++| ||++++||+         +++||+||++||||+.+..    
T Consensus        61 ~~av~v~~v~~~~~~~~~vlLv~q~R~-~~~~~~welP-gG~ve~gEs---------~~~aA~REl~EEtGl~~~~----  125 (212)
T 2dsc_A           61 ADGVAVIPVLQRTLHYECIVLVKQFRP-PMGGYCIEFP-AGLIDDGET---------PEAAALRELEEETGYKGDI----  125 (212)
T ss_dssp             CSEEEEEEEEECTTSCCEEEEEEEEEG-GGTEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCCEE----
T ss_pred             CCEEEEEEEEeCCCCCcEEEEEEeecC-CCCCcEEECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccc----
Confidence            345555543  32  247888764321 1346789999 999999999         7999999999999999763    


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEec---Cc-----cccCCccccccEEEeCHHHHHHHHHh
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR---DV-----SVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~---~~-----~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                       +..++.+ |..+   ++. .+..++|++..   ..     ...++++|+.++.|++++++.+++..
T Consensus       126 -~~~l~~~-~~~~---~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~  186 (212)
T 2dsc_A          126 -AECSPAV-CMDP---GLS-NCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDA  186 (212)
T ss_dssp             -EEECCCE-ESCT---TTB-CCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHHH
T ss_pred             -eEEeccE-EcCC---Ccc-CceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHHh
Confidence             2333333 3322   222 33445555442   11     23456789999999999999999874

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.55  E-value=1.4e-14  Score=125.98  Aligned_cols=152  Identities=14%  Similarity=0.138  Sum_probs=97.1

Q ss_pred             ceeEEEEEEEe--C---CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC
Q 027303           43 LHRAFSVFLFN--S---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP  117 (225)
Q Consensus        43 ~h~~v~v~i~d--~---~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~  117 (225)
                      .+.+|.++++.  .   +++|||++|...  .++|.|.+| ||++++||+         +++||+||++||||+.+... 
T Consensus        38 p~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lP-GG~ve~gEs---------~~~AA~REl~EEtGl~v~~~-  104 (273)
T 2fml_A           38 PSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALP-GGFVNRNES---------TEDSVLRETKEETGVVISQE-  104 (273)
T ss_dssp             CEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECC-EEECCTTSC---------HHHHHHHHHHHHHCCCCCGG-
T ss_pred             CceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECC-ccCCCCCcC---------HHHHHHHHHHHHHCCCCCcC-
Confidence            34566666653  2   348999999754  468999999 999999999         89999999999999876522 


Q ss_pred             CCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccC------------CCCC
Q 027303          118 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA------------GEEG  185 (225)
Q Consensus       118 ~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~------------~~~~  185 (225)
                        .+..++++  ..+..+.. .+.+.++|.+..........+|+.+++|++++++.+.+..+..            ....
T Consensus       105 --~l~~l~~~--~~~~r~~~-~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~  179 (273)
T 2fml_A          105 --NIEQLHSF--SRPDRDPR-GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGK  179 (273)
T ss_dssp             --GEEEEEEE--CCTTSSTT-SSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSS
T ss_pred             --cEEEEEEE--cCCCCCCC-ceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCC
Confidence              34445443  33322111 1345556666543322345578899999999987665422210            0001


Q ss_pred             cccChhHHHHHHHHHHHHHhhhccccc
Q 027303          186 LKLSPWFRLVVDNFLFKWWDHLEKGTL  212 (225)
Q Consensus       186 ~~~~p~~~~~~~~~l~~~~~~~~~~~~  212 (225)
                      ..+.--...++...+..-...+++..+
T Consensus       180 ~~LafdH~~Il~~al~rlr~kl~y~~i  206 (273)
T 2fml_A          180 DTLAFDHSEIIIKAFNRVVDKMEHEPQ  206 (273)
T ss_dssp             SCCSTTHHHHHHHHHHHHHHHTTTCCG
T ss_pred             CcccccHHHHHHHHHHHHHHHhcCCcH
Confidence            133334556777777777777777653

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.55  E-value=3.6e-14  Score=127.54  Aligned_cols=119  Identities=15%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcC
Q 027303           53 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP  132 (225)
Q Consensus        53 d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~  132 (225)
                      +.+.+|||++|..     .|.|.+| ||++++||+         +++||+||++||||+.+..     ...++.+.|..+
T Consensus        35 ~~~~~vLLv~r~~-----~g~W~lP-gG~ve~gEs---------~~~AA~REl~EEtGl~~~~-----~~~l~~~~~~~~   94 (364)
T 3fjy_A           35 LDSIEVCIVHRPK-----YDDWSWP-KGKLEQNET---------HRHAAVREIGEETGSPVKL-----GPYLCEVEYPLS   94 (364)
T ss_dssp             HTTEEEEEEEETT-----TTEEECC-EEECCTTCC---------HHHHHHHHHHHHHSCCEEE-----EEEEEEEC----
T ss_pred             CCceEEEEEEcCC-----CCCEECC-cCCCCCCCC---------HHHHHHHHHHHHhCCeeee-----ccccceEEEecc
Confidence            4445899999853     3899999 999999999         8999999999999999763     234554444433


Q ss_pred             CCCCCc--------ceEEEEEEEEecC-cc------------ccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChh
Q 027303          133 SDGKWG--------EHELDYLLFIVRD-VS------------VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW  191 (225)
Q Consensus       133 ~~~~~~--------e~~~~~v~~~~~~-~~------------~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~  191 (225)
                      ..+.+.        .+...++|.+... ..            ..++++|+.+++|++++++.+++           ..+.
T Consensus        95 ~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~-----------~~~~  163 (364)
T 3fjy_A           95 EEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKIL-----------SHST  163 (364)
T ss_dssp             -----------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHC-----------SCHH
T ss_pred             CCCcccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHh-----------cchh
Confidence            221110        0233455555432 21            13456899999999999999873           4455


Q ss_pred             HHHHHHHHHHH
Q 027303          192 FRLVVDNFLFK  202 (225)
Q Consensus       192 ~~~~~~~~l~~  202 (225)
                      .+.+++.++..
T Consensus       164 ~r~il~~~~~~  174 (364)
T 3fjy_A          164 DKDTLAVFVDR  174 (364)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            66677777443

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.50  E-value=4.5e-15  Score=124.31  Aligned_cols=102  Identities=19%  Similarity=0.119  Sum_probs=71.9

Q ss_pred             EeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEE
Q 027303           52 FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK  130 (225)
Q Consensus        52 ~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE-s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~  130 (225)
                      ++.++++||++|      ++|.|++| ||++++|| +         +++||+||++||||+.+..+.+....+++.+.+.
T Consensus        52 ~~~~~~vLl~~r------~~g~w~~P-GG~ve~gE~t---------~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~  115 (212)
T 1u20_A           52 VPIRRVLLMMMR------FDGRLGFP-GGFVDTRDIS---------LEEGLKRELEEELGPALATVEVTEDDYRSSQVRE  115 (212)
T ss_dssp             EECCEEEEEEEE------TTSCEECS-EEEECTTTSC---------HHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEEC
T ss_pred             EecCCEEEEEEe------CCCeEECC-CcccCCCCCC---------HHHHHHHHHHHHHCCCccccceeeeeEEEecccc
Confidence            355678999988      37999999 99999999 9         7999999999999999875432222345555443


Q ss_pred             cCCCCCCcceEEEEEEEEecC-ccc----------cCCccccccEEEeCHHHHHHH
Q 027303          131 APSDGKWGEHELDYLLFIVRD-VSV----------NPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       131 ~~~~~~~~e~~~~~v~~~~~~-~~~----------~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      .+      .+...++|.+... +.+          ..++.|+.++.|+|++++.+.
T Consensus       116 ~~------~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          116 HP------QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             TT------SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             CC------CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence            32      1345566766542 111          123467889999999998653

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.50  E-value=4.1e-13  Score=114.55  Aligned_cols=145  Identities=11%  Similarity=0.122  Sum_probs=94.5

Q ss_pred             eEEEEEE-EeC-CC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChh-----------hhhhhhcHHHHHHHHHHhHh
Q 027303           45 RAFSVFL-FNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----------IEENALGVRNAAQRKLLDEL  109 (225)
Q Consensus        45 ~~v~v~i-~d~-~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~-----------~~~~~~~~~eaa~REl~EEt  109 (225)
                      .++++++ .+. +|  +|||+||+.....+||.|.|| ||+++++|++.           ..+.+.++..||+||++|||
T Consensus         9 ~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fP-GG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~   87 (232)
T 3qsj_A            9 KAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFP-GGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEI   87 (232)
T ss_dssp             EEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECS-EEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECC-ceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHh
Confidence            4444444 443 23  899999998777789999999 99999988720           00111225899999999999


Q ss_pred             CCCCCCCC-------------------------------------CCceeeeeEEEEEcCCCCCCcceEE-EEEEEEecC
Q 027303          110 GICAEDVP-------------------------------------VDEFTPLGRILYKAPSDGKWGEHEL-DYLLFIVRD  151 (225)
Q Consensus       110 Gl~~~~i~-------------------------------------~~~l~~l~~~~y~~~~~~~~~e~~~-~~v~~~~~~  151 (225)
                      |+.+..-.                                     .+.|.+..  ++..|....   +.+ +++|++..+
T Consensus        88 Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~a--rWiTP~~~~---rRfdT~FFla~lp  162 (232)
T 3qsj_A           88 GWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIG--RFVTPPTQP---VRFDTRFFLCVGQ  162 (232)
T ss_dssp             SCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEE--EEECCTTSS---SEEEEEEEEEECS
T ss_pred             CceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeE--EEcCCcCCc---eeEEEEEEEEECC
Confidence            99864210                                     11122222  333333221   333 355555544


Q ss_pred             cc--ccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          152 VS--VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       152 ~~--~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      ..  ...+++|+.++.|++++++.+....+..     .+.|.-...+.++.
T Consensus       163 q~~~v~~d~~E~~~~~W~~p~eal~~~~~G~i-----~L~pPT~~~L~~L~  208 (232)
T 3qsj_A          163 HLGEPRLHGAELDAALWTPARDMLTRIQSGEL-----PAVRPTIAVLKALV  208 (232)
T ss_dssp             SCCCCCCCSSSEEEEEEEEHHHHHHHHHTTSS-----CCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCceEEEEEEcHHHHHHHHHcCCc-----eechhHHHHHHHHH
Confidence            32  2567899999999999999999888743     66776777776663

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.30  E-value=6.5e-13  Score=111.95  Aligned_cols=94  Identities=17%  Similarity=0.069  Sum_probs=62.6

Q ss_pred             eEEEeeecCCCCCCCCCeeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCC
Q 027303           57 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDG  135 (225)
Q Consensus        57 ~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE-s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~  135 (225)
                      ++|+++|.      +|.|++| ||++++|| +         +++||+||++||||+.+....+   ..+..+. ..+.. 
T Consensus        66 ~~ll~~r~------~g~w~lP-GG~ve~gE~t---------~~eaa~REl~EEtGl~~~~~~l---~~l~~~~-~~~~~-  124 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFP-GGFVDTQDRS---------LEDGLNRELREELGEAAAAFRV---ERTDYRS-SHVGS-  124 (217)
T ss_dssp             EEEEEEET------TSCEECS-EEECCTTCSS---------HHHHHHHHHHHHHCGGGGGCCC---CGGGEEE-EEECS-
T ss_pred             cEEEEEcc------CCeEECC-ceecCCCCCC---------HHHHHHHHHHHHHCCCCcccee---EEEEEEe-ecCCC-
Confidence            56776664      6899999 99999999 9         7999999999999999873222   2222221 11111 


Q ss_pred             CCcceEEEEEEEEecC-ccc----------cCCccccccEEEeCHHHHH
Q 027303          136 KWGEHELDYLLFIVRD-VSV----------NPNPDEVAEYKYVNREQLK  173 (225)
Q Consensus       136 ~~~e~~~~~v~~~~~~-~~~----------~~~~~Ev~~~~Wv~~eel~  173 (225)
                        ..+...++|.+... ...          .....|+.++.|+|++++.
T Consensus       125 --~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          125 --GPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             --SSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             --CCeEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence              11445566666542 112          2235688999999999875

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.28  E-value=1.1e-11  Score=108.89  Aligned_cols=42  Identities=12%  Similarity=0.052  Sum_probs=37.9

Q ss_pred             eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCC
Q 027303           57 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA  113 (225)
Q Consensus        57 ~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~  113 (225)
                      ++||++|..     .|.|.+| ||++++||+         +.+||+||++||||+.+
T Consensus       140 ~vLl~~r~~-----~g~W~lP-GG~Ve~GEs---------~~eAA~REl~EETGl~~  181 (292)
T 1q33_A          140 QFVAIKRKD-----CGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSL  181 (292)
T ss_dssp             EEEEEECTT-----TCSEECC-CEECCTTCC---------HHHHHHHHHHHHHSCGG
T ss_pred             EEEEEEecC-----CCcEeCC-CcccCCCCC---------HHHHHHHHHHHHhCCcc
Confidence            599998864     3899998 999999999         89999999999999984

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.71  E-value=5.6e-08  Score=86.37  Aligned_cols=108  Identities=11%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHh-CCCCCCCCCCceee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL-GICAEDVPVDEFTP  123 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEt-Gl~~~~i~~~~l~~  123 (225)
                      .++++++.+ +|+|||+  .     ..| |.+| ||.+  +++         ..++|+||++||+ |+.+..      ..
T Consensus       184 ~~vgaii~~-~g~vLL~--~-----~~G-W~LP-G~~~--~~~---------~~~~a~RE~~EEttGl~v~~------~~  236 (321)
T 3rh7_A          184 IRLGAVLEQ-QGAVFLA--G-----NET-LSLP-NCTV--EGG---------DPARTLAAYLEQLTGLNVTI------GF  236 (321)
T ss_dssp             EEEEEEEES-SSCEEEB--C-----SSE-EBCC-EEEE--SSS---------CHHHHHHHHHHHHHSSCEEE------EE
T ss_pred             ceEEEEEEE-CCEEEEe--e-----CCC-ccCC-cccC--CCC---------hhHHHHHHHHHHhcCCEEee------ce
Confidence            455666554 6999998  2     137 9999 8865  444         2469999999997 999872      22


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      +..+ |..+..     +....+|.+.....      +..+++|+++++|+.+          ....|-.+..+++|+.
T Consensus       237 L~~v-~~~~~~-----~~~~i~f~~~~~~g------~~~e~~~f~~~elp~~----------~~~~~~~~~~L~~y~~  292 (321)
T 3rh7_A          237 LYSV-YEDKSD-----GRQNIVYHALASDG------APRQGRFLRPAELAAA----------KFSSSATADIINRFVL  292 (321)
T ss_dssp             EEEE-EECTTT-----CCEEEEEEEEECSS------CCSSSEEECHHHHTTC----------EESSHHHHHHHHHHHH
T ss_pred             EEEE-EEcCCC-----ceEEEEEEEEeCCC------CeeeeEEECHHHCCCc----------ccCCHHHHHHHHHHHH
Confidence            3222 444321     22233455553211      1378999999999764          2346888899999954

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.63  E-value=3.6e-08  Score=81.67  Aligned_cols=53  Identities=19%  Similarity=0.115  Sum_probs=42.1

Q ss_pred             ceeEEEEEEEeCC-C----------eEEEeeecCCCCCCCCCeeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHhHhC
Q 027303           43 LHRAFSVFLFNSK-Y----------ELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELG  110 (225)
Q Consensus        43 ~h~~v~v~i~d~~-g----------~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE-s~~~~~~~~~~~eaa~REl~EEtG  110 (225)
                      +..+++++++.++ +          .+|+|.|-      .|.|+|| ||++|+|| |         +++|+.||+.||+|
T Consensus        20 ~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R~------~G~weFP-GGkVe~gE~t---------~e~aL~REl~EElg   83 (214)
T 3kvh_A           20 WSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRF------DGLLGFP-GGFVDRRFWS---------LEDGLNRVLGLGLG   83 (214)
T ss_dssp             CEEEEEEEEEEEEEEEETTTEEEEEEEEEEEET------TSCEECS-EEEECTTTCC---------HHHHHHHSCCSCC-
T ss_pred             ccEeeEEEEEcCCccccccccchhheEEEeeee------CCEEeCC-CccCCCCCCC---------HHHHHHHHHHHhhC
Confidence            5668888887653 2          36777664      4999999 99999999 7         89999999999999


Q ss_pred             C
Q 027303          111 I  111 (225)
Q Consensus       111 l  111 (225)
                      +
T Consensus        84 ~   84 (214)
T 3kvh_A           84 C   84 (214)
T ss_dssp             -
T ss_pred             C
Confidence            7

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.48  E-value=2.4e-07  Score=77.22  Aligned_cols=57  Identities=14%  Similarity=0.125  Sum_probs=46.4

Q ss_pred             cCCcceeEEEEEEEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCC
Q 027303           39 SLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI  111 (225)
Q Consensus        39 ~~~~~h~~v~v~i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl  111 (225)
                      +.+....+.++++.+..+  +|||.|+..      +.|.+| ||++++||+         +++|+.|||.||+|+
T Consensus        54 ~~g~R~sV~avil~~~~~~phVLLlq~~~------~~f~LP-GGkle~gE~---------~~eaL~REL~EELg~  112 (208)
T 3bho_A           54 KIGMRRTVEGVLIVHEHRLPHVLLLQLGT------TFFKLP-GGELNPGED---------EVEGLKRLMTEILGR  112 (208)
T ss_dssp             HHCSEEEEEEEEEEEETTEEEEEEEEEET------TEEECS-EEECCTTCC---------HHHHHHHHHHHHHCC
T ss_pred             hhCCceEEEEEEEEcCCCCcEEEEEEcCC------CcEECC-CcccCCCCC---------HHHHHHHHHHHHhCC
Confidence            355566677777776555  799888742      489999 999999999         799999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	2e-24
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	2e-21
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	1e-19
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	5e-07
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	7e-05

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 92.2 bits (228), Expect = 2e-24
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 43  LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 102
           LH AFS +LFN+K +LL+ +R+ +K  +P VWTN+ C HP   ES           +A  
Sbjct: 1   LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES---------NEDAVI 51

Query: 103 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 162
           R+   ELG+                 Y+A       E+E+  +       ++  N DEV 
Sbjct: 52  RRCRYELGVEITPPESIYP----DFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVM 107

Query: 163 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF-LFKWWDHLE 208
           +Y++ +   +   +            SPW  +   N    K      
Sbjct: 108 DYQWCDLADVLHGID-----ATPWAFSPWMVMQATNREARKRLSAFT 149

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 84.8 bits (209), Expect = 2e-21
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 34/187 (18%)

Query: 14  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
            +V+E + V+   ++             L HRA  + + +   ++L+Q+R+ TK   P +
Sbjct: 6   DIVNEENEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGM 59

Query: 74  WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
              T        E             +A+R+  +ELGI         F   G+  ++  +
Sbjct: 60  LDATAGGVVQADEQL---------LESARREAEEELGIAGVP-----FAEHGQFYFEDKN 105

Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
                      L   V         DEV+E  ++  E++              + +P   
Sbjct: 106 C-----RVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCD---------EFTPDSL 151

Query: 194 LVVDNFL 200
             +  ++
Sbjct: 152 KALALWM 158

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 79.9 bits (196), Expect = 1e-19
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 25/184 (13%)

Query: 12  RCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 71
           R  LV+E D VVG   + +  L           R  + FL NS+ +L + +RS +K  FP
Sbjct: 2   RLDLVNERDEVVGQILRTDPAL------RWERVRVVNAFLRNSQGQLWIPRRSPSKSLFP 55

Query: 72  LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 131
                +        E+            A +R+  +EL +  + +              +
Sbjct: 56  NALDVSVGGAVQSGET---------YEEAFRREAREELNVEIDALSWRPLA------SFS 100

Query: 132 PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK--LS 189
           P           Y L    D +   NP++++  +++  E L   +   +A +  L   + 
Sbjct: 101 PFQTTLSSFMCVYEL--RSDATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVR 158

Query: 190 PWFR 193
             +R
Sbjct: 159 RCYR 162

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 45.9 bits (108), Expect = 5e-07
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 44  HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQR 103
            RA  V L N + ++LL Q  G              S  +  + E  ++        A R
Sbjct: 12  LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVE-DGENPQDA-------AVR 63

Query: 104 KLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNP-DEVA 162
           +  +E G+    V       LG  L + P       H   +L       ++ P   DE+A
Sbjct: 64  EACEETGLRVRPV-----KFLGAYLGRFPDGVLILRH--VWLAEPEPGQTLAPAFTDEIA 116

Query: 163 EYKYVNREQLKELL 176
           E  +V+RE   +L 
Sbjct: 117 EASFVSREDFAQLY 130

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 13/131 (9%)

Query: 46  AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKL 105
           +    + NS+ E LL +R+         W           E+            A +R  
Sbjct: 20  SLDFIVENSRGEFLLGKRTNRP--AQGYWF-VPGGRVQKDETL---------EAAFERLT 67

Query: 106 LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYL-LFIVRDVSVNPNPDEVAEY 164
           + ELG+         +           S   +  H +     F V +  +    ++  +Y
Sbjct: 68  MAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDY 127

Query: 165 KYVNREQLKEL 175
           +++  + L   
Sbjct: 128 RWLTSDALLAS 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	100.0
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.97
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.96
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.85
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.83
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.83
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.81
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.8
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.79
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.79
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.75
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.75
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.74
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.73
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.72
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.72
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.67
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.67
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.67
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.67
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.65
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.62
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.61
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.6
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.59
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.57
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.42
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.37
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.31
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.06

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-33  Score=222.59  Aligned_cols=160  Identities=19%  Similarity=0.245  Sum_probs=136.2

Q ss_pred             ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCCh
Q 027303            9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE   88 (225)
Q Consensus         9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~   88 (225)
                      +.|++++||++|+++|..+|..+|.      .+++|++|+++++|++|++||+||+..+..+||.|++|+||++++||| 
T Consensus         1 ~~E~~~i~d~~~~~ig~~~R~~~~~------~~~~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs-   73 (161)
T d2fkba1           1 STEWVDIVNEENEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ-   73 (161)
T ss_dssp             CCCEEEEECTTSCEEEEEEHHHHHH------HTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCC-
T ss_pred             CcEEEEEECCCCCEEeEEEHHHhhc------CCCcEeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCc-
Confidence            4699999999999999999998874      688999999999999999999999988899999999998999999999 


Q ss_pred             hhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeC
Q 027303           89 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN  168 (225)
Q Consensus        89 ~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~  168 (225)
                              +++||+||++|||||+..     .+..++.+.|....     .+.+.++|.+..+.++.++++|+.+++|++
T Consensus        74 --------~~~aa~REl~EE~Gi~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Ev~~~~w~~  135 (161)
T d2fkba1          74 --------LLESARREAEEELGIAGV-----PFAEHGQFYFEDKN-----CRVWGALFSCVSHGPFALQEDEVSEVCWLT  135 (161)
T ss_dssp             --------HHHHHHHHHHHHHCCBSC-----CCEEEEEEEEEETT-----EEEEEEEEEEECCCCCCCCTTTEEEEEEEC
T ss_pred             --------HHHHHHHHHHHHhCCccc-----eeEEEEEEEeecCC-----cEEEEEEEEEEECCCCcCChhHeeEEEEEe
Confidence                    899999999999999865     34567776665432     144556666766777788889999999999


Q ss_pred             HHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          169 REQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       169 ~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      ++|+.++.         ..|+|.....+..|+.+
T Consensus       136 ~~el~~~~---------~~~~P~~~~al~~~~~r  160 (161)
T d2fkba1         136 PEEITARC---------DEFTPDSLKALALWMKR  160 (161)
T ss_dssp             HHHHHTTG---------GGBCHHHHHHHHHHHHH
T ss_pred             HHHHhhhh---------hccCCcHHHHHHHHHhc
Confidence            99998763         35899999999888754

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.97  E-value=4.2e-31  Score=211.51  Aligned_cols=160  Identities=19%  Similarity=0.192  Sum_probs=122.2

Q ss_pred             ceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhh
Q 027303           11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELI   90 (225)
Q Consensus        11 E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~   90 (225)
                      |++++||++++++|+.+|.++|.      .+.+|++|+++++|++|++||+||+..|..+||+|++|+||++++|||   
T Consensus         1 E~~d~vd~~~~~~g~~~r~~~~~------~~~~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs---   71 (162)
T d2o5fa1           1 ERLDLVNERDEVVGQILRTDPAL------RWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGET---   71 (162)
T ss_dssp             CEEEEECTTSCEEEEEETTCTTC------CGGGSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCC---
T ss_pred             CcEEEECCCCCEEEEEEHHHHhh------CCCeEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCC---
Confidence            78999999999999999998874      688999999999999999999999998999999999998999999999   


Q ss_pred             hhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHH
Q 027303           91 EENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRE  170 (225)
Q Consensus        91 ~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~e  170 (225)
                            +.+||+||++||||+++...     .....+.+.. ....  ...++++|.+..+..+.++++|+.+++|++++
T Consensus        72 ------~~eaa~REl~EE~Gl~~~~~-----~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~Ev~~~~W~~~e  137 (162)
T d2o5fa1          72 ------YEEAFRREAREELNVEIDAL-----SWRPLASFSP-FQTT--LSSFMCVYELRSDATPIFNPNDISGGEWLTPE  137 (162)
T ss_dssp             ------HHHHHHHHHHHHHCCCGGGS-----EEEEEEEECT-TTSS--CSSEEEEEEEECSSCCCCCTTTCSEEEEECHH
T ss_pred             ------hhhhhhhhhhheeCcceeeE-----EEEEEEEecc-cccc--ceEEEEEEEEecCCCccCChhHeeEEEEeeHH
Confidence                  89999999999999998732     2233333322 2111  13455667677677778888999999999999


Q ss_pred             HHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          171 QLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       171 el~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      ++.+++..++     ....+.++ .+++|
T Consensus       138 el~~~~~~ge-----~~~~~~~~-~~~~~  160 (162)
T d2o5fa1         138 HLLARIAAGE-----AAKGDLAE-LVRRC  160 (162)
T ss_dssp             HHHHHHHHTC-----CBCTTHHH-HHHHH
T ss_pred             HHHHHHHCCC-----CCchhHHH-HHHHH
Confidence            9999998874     34444444 44444

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.7e-29  Score=201.02  Aligned_cols=139  Identities=29%  Similarity=0.457  Sum_probs=115.1

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      +|++++++|+|++|++||+||+..|..+||.|++++|||+++|||         +.+||+||++|||||++....  .+ 
T Consensus         1 lHra~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt---------~~eaa~RE~~EE~Gi~~~~~~--~~-   68 (153)
T d1hzta_           1 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES---------NEDAVIRRCRYELGVEITPPE--SI-   68 (153)
T ss_dssp             CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC---------HHHHHHHHHHHHHCCCBSCCE--EE-
T ss_pred             CceEEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCc---------HHHHHHHHHHHHcCceeeccc--ce-
Confidence            589999999999999999999999999999999977999999999         899999999999999976321  11 


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                       ...+.|....++++..+.++++|.+..+..+.++++|+++++|+++++|.+.+..+     |..|+||++..+.+-
T Consensus        69 -~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~-----p~~~tpW~~~~~~~~  139 (153)
T d1hzta_          69 -YPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDAT-----PWAFSPWMVMQATNR  139 (153)
T ss_dssp             -ETTCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHHHC-----GGGBCHHHHHHHHSH
T ss_pred             -eccccccccccccccceeEEEEEEEeeCCCccCChhheeEEEEeeHHHHHHHHHcC-----CcccCHHHHHHHhhH
Confidence             22344554444455556666777777777788888999999999999999999886     679999999877764

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.85  E-value=3.1e-20  Score=145.87  Aligned_cols=120  Identities=24%  Similarity=0.293  Sum_probs=89.4

Q ss_pred             CcceeEEEEEEEeCCCeEEEeeecCC--CCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           41 NLLHRAFSVFLFNSKYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        41 ~~~h~~v~v~i~d~~g~vLL~rRs~~--k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      ...+++++++++|++|++||+||+..  ....+|.|++| ||++++||+         +.+||+||++||||+.+..   
T Consensus         9 p~~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~---   75 (158)
T d1sjya_           9 PVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIP-SGAVEDGEN---------PQDAAVREACEETGLRVRP---   75 (158)
T ss_dssp             CCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECS-EEECCTTSC---------HHHHHHHHHHHHHSCCEEE---
T ss_pred             CCceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHhCcccee---
Confidence            34678999999999999999998754  33457999998 999999999         7999999999999999763   


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccc-cCCccccccEEEeCHHHHHHHHHhc
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSV-NPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~-~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                        +.+++.+.+..+.+  .  ....++|++...  ... ...++|+.+++|++++++.+++..+
T Consensus        76 --~~~i~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~  133 (158)
T d1sjya_          76 --VKFLGAYLGRFPDG--V--LILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  133 (158)
T ss_dssp             --EEEEEEEEEECTTS--C--EEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             --eEEEEEEEEECCCC--C--EEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhCC
Confidence              45566665654432  1  334455555432  222 2335789999999999999987764

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=1.2e-19  Score=138.28  Aligned_cols=105  Identities=23%  Similarity=0.276  Sum_probs=80.1

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .+|+++++|+++++|++||.      .|.|.+| ||+++.|||         +.+||+||++||||+++..     +..+
T Consensus         3 v~agavv~~~~~~vLl~~~~------~g~w~~P-gG~ve~gEt---------~~~aa~RE~~EEtGi~~~~-----~~~~   61 (126)
T d1vcda1           3 LGAGGVVFNAKREVLLLRDR------MGFWVFP-KGHPEPGES---------LEEAAVREVWEETGVRAEV-----LLPL   61 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECT------TSCEECC-EECCCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEE
T ss_pred             EEEEEEEEECCCEEEEEEcC------CCCEECC-ccccCCCCC---------HHHHHHHHHHHHcCCeeEE-----EEEE
Confidence            57888999999999998764      3789999 999999999         8999999999999999762     3456


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +...|..+..   . +..+++|.+..+..+.+ .+|+.+++|++++++.++
T Consensus        62 ~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~~  107 (126)
T d1vcda1          62 YPTRYVNPKG---V-EREVHWFLMRGEGAPRL-EEGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             EEEEEECTTS---C-EEEEEEEEEEEESCCCC-CTTCCEEEEECHHHHHHH
T ss_pred             eeeeeccCCC---e-EEEEEEEEEEEcCCCCC-CccceEEEEEEHHHHhhc
Confidence            6555554321   1 33445565555444444 368889999999999887

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.83  E-value=3.3e-20  Score=143.77  Aligned_cols=130  Identities=12%  Similarity=0.095  Sum_probs=91.5

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      .|.+|++++.+ +|++||+||....  ..|.|.+| ||+++.|||         +.+||+||++||||+.+..     ..
T Consensus         2 P~v~va~ii~~-~~k~Llv~r~~~~--~~~~w~~P-gG~ve~gEt---------~~~aa~RE~~EEtGl~~~~-----~~   63 (146)
T d2b0va1           2 PNVTVAAVIEQ-DDKYLLVEEIPRG--TAIKLNQP-AGHLEPGES---------IIQACSREVLEETGHSFLP-----EV   63 (146)
T ss_dssp             CEEEEEEECEE-TTEEEEEEECSSS--SCCEEECS-EEECCTTSC---------HHHHHHHHHHHHHSEEEEE-----EE
T ss_pred             CeEEEEEEEEe-CCEEEEEEEecCC--CCCEEECC-eeeECCCCC---------HHHHHHHHHHHhheeeccc-----ce
Confidence            35666666654 5999999987543  56899999 999999999         8999999999999999763     23


Q ss_pred             eeeEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          123 PLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      .++.+.+..+..+.   +...++|.+..  .......++|+.+++|++++++.++...        ...|.+...+++|+
T Consensus        64 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~--------~~~~~v~~~l~~y~  132 (146)
T d2b0va1          64 LTGIYHWTCASNGT---TYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAM--------HRTPLVMQCIEDYH  132 (146)
T ss_dssp             EEEEEEEEETTTTE---EEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGG--------BSSTHHHHHHHHHH
T ss_pred             EEEEEEEecCCCCe---EEEEEEEEEEeecCCCCCCCCcceeEEEEeeHHHHhhCccc--------cCCHHHHHHHHHHH
Confidence            34444444333221   33334444332  2223345578999999999999876433        45688889999996


Q ss_pred             H
Q 027303          201 F  201 (225)
Q Consensus       201 ~  201 (225)
                      .
T Consensus       133 ~  133 (146)
T d2b0va1         133 A  133 (146)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.3e-19  Score=141.39  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=85.6

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      ..++.++|+|.+|++||+||+..  .++|.|.+| ||++++|||         +.+||+||++||||+++..   ..+..
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~--~~~g~W~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~---~~~~~   82 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPI---TAGQF   82 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSS--SSTTSEECC-EEECCTTCC---------HHHHHHHHHHHHHSSCCCG---GGSEE
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCC--CCCCcEecc-cccccCCCc---------HHHHHHHHHHHHhCceEee---eeeeE
Confidence            46788889998899999999743  478999998 999999999         8999999999999999763   23455


Q ss_pred             eeEEEEEcCCC---CCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHH
Q 027303          124 LGRILYKAPSD---GKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       124 l~~~~y~~~~~---~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ++.+.+..+..   .....+.+..+|.+... ......++|+.+++|++++++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~  138 (160)
T d1ryaa_          83 YGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             EEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHC
T ss_pred             EEEEEEeccccccCCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcC
Confidence            55554443321   22222334445555543 344455678999999999999764

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.8e-19  Score=138.62  Aligned_cols=125  Identities=15%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +.+|.+++.+ ++++||+||...   .+|.|.+| ||++++|||         +++||+||++||||+.+..     ..+
T Consensus         3 ~paViv~i~~-~~~vLL~~~~~~---~~g~w~lp-GG~ve~GEt---------~~~aa~REl~EEtG~~~~~-----~~~   63 (131)
T d1vk6a2           3 APCIIVAIRR-DDSILLAQHTRH---RNGVHTVL-AGFVEVGET---------LEQAVAREVMEESGIKVKN-----LRY   63 (131)
T ss_dssp             EEEEEEEEEE-TTEEEEEEETTT---CSSCCBCE-EEECCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEE
T ss_pred             ccEEEEEEEe-CCEEEEEEeccC---CCCCEecc-cCCCcCCCc---------HHHHHHHHHHHHhCCcccc-----eeE
Confidence            4677666665 578999988643   36899998 999999999         8999999999999999763     344


Q ss_pred             eeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  202 (225)
Q Consensus       124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  202 (225)
                      ++...+..       .+...++|.+.. ++.+.+++.|+.+++|++++++..+.         .. ....+.++++||+.
T Consensus        64 ~~~~~~~~-------~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~---------~~-~~i~r~li~~~l~~  126 (131)
T d1vk6a2          64 VTSQPWPF-------PQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLP---------PP-GTVARRLIEDTVAM  126 (131)
T ss_dssp             EEEEEEET-------TEEEEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCSCC---------CT-TSHHHHHHHHHHHH
T ss_pred             EEEeccCc-------CceEEEEEEEEEcCCcccCCCccEEEEEEEcHHHHhhCC---------CC-hHHHHHHHHHHHHH
Confidence            44443331       144555665554 45667778899999999999986541         11 22346677887765


Q ss_pred             HH
Q 027303          203 WW  204 (225)
Q Consensus       203 ~~  204 (225)
                      -.
T Consensus       127 ~r  128 (131)
T d1vk6a2         127 CR  128 (131)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.79  E-value=5.4e-19  Score=140.72  Aligned_cols=116  Identities=24%  Similarity=0.359  Sum_probs=77.9

Q ss_pred             ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303           43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  122 (225)
Q Consensus        43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~  122 (225)
                      ++.+|+++|+|.+|++||+||+.    .||.|++| ||+++.||+         +++||+||++||||+++..+.   ..
T Consensus        13 yR~~Vg~vI~n~~~~vLL~kR~~----~~g~W~~P-gG~ve~gEt---------~~~Aa~REl~EEtGl~~~~~~---~~   75 (165)
T d1jkna_          13 YRRNVGICLMNNDKKIFAASRLD----IPDAWQMP-QGGIDEGED---------PRNAAIRELREETGVTSAEVI---AE   75 (165)
T ss_dssp             EEEEEEEEEECTTSCEEEEEESS----STTCEECC-EECCCTTCC---------HHHHHHHHHHHHTCCCSEEEE---EE
T ss_pred             ccccEEEEEEeCCCEEEEEEEcC----CCCcccCc-cceEcCCCC---------hhHHHHHHHHHhhcccccccc---cc
Confidence            57789999999999999999974    37999999 999999999         899999999999999976321   11


Q ss_pred             eeeEEEEEcCC----------CCCCcceEEEEEEEEe--c-CccccC-----CccccccEEEeCHHHHHHHH
Q 027303          123 PLGRILYKAPS----------DGKWGEHELDYLLFIV--R-DVSVNP-----NPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       123 ~l~~~~y~~~~----------~~~~~e~~~~~v~~~~--~-~~~~~~-----~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      ..+.+.+..+.          .+... ....++|...  . +..+++     ...|+.+++|++++++.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i  146 (165)
T d1jkna_          76 VPYWLTYDFPPKVREKLNIQWGSDWK-GQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLT  146 (165)
T ss_dssp             CSSCEEEECCHHHHHHHHHHTCCCCS-EEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHS
T ss_pred             ccccccccccceeeceeeeeecCCcc-ceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhc
Confidence            12222222110          11111 1222223222  1 222222     23488999999999998864

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.3e-19  Score=138.16  Aligned_cols=107  Identities=16%  Similarity=0.199  Sum_probs=77.7

Q ss_pred             EEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeE
Q 027303           47 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR  126 (225)
Q Consensus        47 v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~  126 (225)
                      ++++|++.+|++||+||+.. ..+||.|++| ||+++.|||         +.+||.||++||||+.+...     ..++.
T Consensus         7 av~ii~~~~~~vLl~~R~~~-~~~~g~W~~P-gG~ve~gEs---------~~~a~~RE~~EE~gl~~~~~-----~~~~~   70 (129)
T d1puna_           7 AVGIIRNENNEIFITRRAAD-AHMANKLEFP-GGKIEMGET---------PEQAVVRELQEEVGITPQHF-----SLFEK   70 (129)
T ss_dssp             EEEECBCTTSCEEEBCCCSS-CSCTTCCBCS-CCSCTTTSC---------TTHHHHHHHHHTTCSCCCCC-----CCSEE
T ss_pred             EEEEEEECCCEEEEEEecCC-CCCCCcEECC-cceecCCCc---------hhHHHHHHHHHHhCCccccc-----eeeeE
Confidence            34456777899999999765 4579999998 999999999         79999999999999998743     34555


Q ss_pred             EEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303          127 ILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       127 ~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +.|..+.     .+...++|.+.. ....+...|+.+++|++++++.++
T Consensus        71 ~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~  113 (129)
T d1puna_          71 LEYEFPD-----RHITLWFWLVER-WEGEPWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEEECSS-----EEEEEEEEECCC-CSSCCCTTSSSCCEEECGGGCCTT
T ss_pred             Eeecccc-----cceeEEEEEEee-ccCcCCCCccceEEEEEHHHcccC
Confidence            5555331     133345555443 122334568899999999998553

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-18  Score=135.64  Aligned_cols=110  Identities=14%  Similarity=0.192  Sum_probs=76.2

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      +.++++++..+|++||++|...  .+.|.|.+| ||+++.|||         +.+||+||++||||+++...     ..+
T Consensus         5 r~~~~v~i~~~~~vLL~~r~~~--~~~g~W~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~~~~~-----~~~   67 (156)
T d1irya_           5 RLYTLVLVLQPQRVLLGMKKRG--FGAGRWNGF-GGKVQEGET---------IEDGARRELQEESGLTVDAL-----HKV   67 (156)
T ss_dssp             EEEEEECEECSSEEEEEEESSS--SSBTCEECB-CCBCCTTCC---------HHHHHHHHHHHHHSCCBSCC-----CEE
T ss_pred             EEEEEEEEEECCEEEEEEecCC--CCCCEEECc-EeEecCCCC---------HHHHHHHHHHHHHCCcccce-----EEE
Confidence            4556666666799999999743  357999998 999999999         89999999999999997643     345


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      +.+.+..+....   +..+++|.+.. ....+.+.+..+++|+++++++++
T Consensus        68 ~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~ee~~~~W~~~~~l~~~  114 (156)
T d1irya_          68 GQIVFEFVGEPE---LMDVHVFCTDS-IQGTPVESDEMRPCWFQLDQIPFK  114 (156)
T ss_dssp             EEEEEEETTCSC---EEEEEEECCCC-BCSCCCCCSSEEEEEEETTCCCST
T ss_pred             EEEEEEcCCCCE---EEEEEEEEEEe-ecCcccCCchhheEEeEHHHCCcC
Confidence            555555443221   23334443332 222333445577899999998764

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.75  E-value=1.5e-17  Score=126.81  Aligned_cols=111  Identities=21%  Similarity=0.148  Sum_probs=72.4

Q ss_pred             eEEEEEEEeC---CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           45 RAFSVFLFNS---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        45 ~~v~v~i~d~---~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      +++++++++.   +.++||.||+.    .||.|.+| ||+++.||+         +.+||+||++||||+++..+.    
T Consensus         3 raag~vv~~~~~~~~~~Ll~~r~~----~~g~W~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~~----   64 (137)
T d1ktga_           3 KAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPP-KGHVDPGED---------EWQAAIRETKEEANITKEQLT----   64 (137)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESS----TTCCEESS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGEE----
T ss_pred             EEEEEEEEEEcCCCEEEEEEEEcC----CCCcEeCc-ccccccCCC---------HHHHHHHHHHHHhCCcceeee----
Confidence            5666676542   23688888874    36899998 999999999         899999999999999976322    


Q ss_pred             eeeeEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHH
Q 027303          122 TPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                       .+..+.+......... +..+++|....  +..+.++ +|+.+++|++++++.+++
T Consensus        65 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~  118 (137)
T d1ktga_          65 -IHEDCHETLFYEAKGK-PKSVKYWLAKLNNPDDVQLS-HEHQNWKWCELEDAIKIA  118 (137)
T ss_dssp             -EEEEEEEEEEEEETTE-EEEEEEEEEEECSCCCCCCC-TTEEEEEEECHHHHHHHH
T ss_pred             -eeeeeeeeeecCCCcc-eEEEEEEEEEecCCCCcCCC-cceEEEEEEEHHHHHHhc
Confidence             2221111111111111 22333343333  2334444 689999999999999874

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.74  E-value=6.4e-18  Score=132.85  Aligned_cols=108  Identities=13%  Similarity=0.145  Sum_probs=72.9

Q ss_pred             EEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           47 FSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        47 v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      +.|+|++. ++++||++|+.....+ |.|++| ||++++|||         +.+||.||++||||+.+...     ..++
T Consensus        11 ~~~~i~~~~~~~lLl~~R~~~~~~~-~~w~~P-GG~ve~gEs---------~~~aa~RE~~EEtGl~v~~~-----~~~~   74 (155)
T d2b06a1          11 NICLIEDLETQRVVMQYRAPENNRW-SGYAFP-GGHVENDEA---------FAESVIREIYEETGLTIQNP-----QLVG   74 (155)
T ss_dssp             EEEEEEETTTTEEEEEEEC-----C-CEEECC-CCBCCTTSC---------HHHHHHHHHHHHHSEEEESC-----EEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCCCC-CcEECc-eeEEcCCCC---------HHHHHHHHHHHhcCeeEeee-----EEEE
Confidence            33445564 4689999998665444 669998 999999999         89999999999999998732     3344


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                      ...+.....    .+.+.++|.+... ...+...|..+++|+++++|.++
T Consensus        75 ~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~e~~~~~W~~~~el~~l  119 (155)
T d2b06a1          75 IKNWPLDTG----GRYIVICYKATEF-SGTLQSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             EEEEECTTS----CEEEEEEEEECEE-EECCCCBTTBEEEEEEGGGGGGS
T ss_pred             EEEeecCCC----CeEEEEEEEEEec-CCccCCCchheEEEEEHHHhccC
Confidence            444443321    2445555655431 22344578899999999999764

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.73  E-value=2.3e-17  Score=127.76  Aligned_cols=127  Identities=17%  Similarity=0.100  Sum_probs=80.9

Q ss_pred             eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303           44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  123 (225)
Q Consensus        44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~  123 (225)
                      +.++.++|++.++.+||..|..     .|.|.+| ||++++|||         +.+||+||++||||+++..     ...
T Consensus        17 r~~~~~vi~~~~~~~lll~~~~-----~~~w~lP-gG~ie~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~   76 (147)
T d2azwa1          17 RYAAYIIVSKPENNTMVLVQAP-----NGAYFLP-GGEIEGTET---------KEEAIHREVLEELGISVEI-----GCY   76 (147)
T ss_dssp             CCEEEEECEEGGGTEEEEEECT-----TSCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EEE
T ss_pred             CCeEEEEEEECCCCEEEEEEcC-----CCeEECc-EeEeCCCCC---------HHHHHHHHHHhhhceeeee-----eeE
Confidence            4567777888766555544432     2789999 999999999         8999999999999999763     223


Q ss_pred             eeEEEEEcCCCCCCc-ceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303          124 LGRILYKAPSDGKWG-EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  201 (225)
Q Consensus       124 l~~~~y~~~~~~~~~-e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  201 (225)
                      ++.+.+......... .+...++|.+........+.+|+.+++|++++++.+++           ..+..+.++++||.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l-----------~~~~~r~~l~~~la  144 (147)
T d2azwa1          77 LGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLL-----------KRGSHRWAVEKWLA  144 (147)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHB-----------SCHHHHHHHHHHHH
T ss_pred             EEEEEEEeeeccCCceEEEEEEEEEEEeccccCCCCccceEEEEEEHHHHHHHc-----------CChhHHHHHHHHHh
Confidence            333322221111111 12334555555433333345688899999999998764           33345566666654

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=127.86  Aligned_cols=114  Identities=17%  Similarity=0.120  Sum_probs=73.7

Q ss_pred             CCcceeEEEEEEEe--CCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC
Q 027303           40 LNLLHRAFSVFLFN--SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP  117 (225)
Q Consensus        40 ~~~~h~~v~v~i~d--~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~  117 (225)
                      .+..+ .+++++++  +++.+||.+|+.    .||.|.+| ||++++|||         +++||+||++||||+.+..  
T Consensus         8 ~~~r~-~a~~vv~~~~~~~~~lL~~~~~----~~~~W~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~--   70 (135)
T d2fvva1           8 DGYKK-RAACLCFRSESEEEVLLVSSSR----HPDRWIVP-GGGMEPEEE---------PSVAAVREVCEEAGVKGTL--   70 (135)
T ss_dssp             TSCEE-EEEEEEESSTTCCEEEEEECSS----CTTSEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEE--
T ss_pred             CCCce-EEEEEEEEecCCCEEEEEEEeC----CCCcEECC-ccccCCCCC---------HHHHHHHHHHHHhCCccee--
Confidence            34334 44555554  334566666653    47999998 999999999         8999999999999999762  


Q ss_pred             CCceeeeeEEEEEcCCCCCCcceEEEEEEEEe-cCccccCCccccccEEEeCHHHHHHHHHh
Q 027303          118 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIV-RDVSVNPNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       118 ~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~-~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                         ..+++.+.+...     ......+.+.+. .......+.+|+.+++|++++++.+++..
T Consensus        71 ---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~  124 (135)
T d2fvva1          71 ---GRLVGIFENQER-----KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY  124 (135)
T ss_dssp             ---EEEEEEEEETTT-----TEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred             ---eEEEEEEeeccC-----CccEEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHhc
Confidence               233443333211     112222333332 22333334577889999999999999754

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.72  E-value=1.4e-17  Score=135.72  Aligned_cols=115  Identities=19%  Similarity=0.076  Sum_probs=76.0

Q ss_pred             CcceeEEEEEEEe-CCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           41 NLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        41 ~~~h~~v~v~i~d-~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      ...+.+|.+.+++ .+.++|++||+.....+||.|.|| ||+++.||+         +.+||+||++|||||.+..+   
T Consensus        29 ~~r~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fP-GG~~e~~E~---------~~~aAlRE~~EE~Gl~~~~~---   95 (187)
T d1nqza_          29 HYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFP-GGSLDAGET---------PTQAALREAQEEVALDPAAV---   95 (187)
T ss_dssp             -CEEEEEEEEEESSSSCBBCEEEEC------CCCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGC---
T ss_pred             CCCccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCC-ccccccCCc---------hhHHHHHHHHHhhcccccee---
Confidence            3456667767764 345899999998877799999999 999999999         79999999999999998743   


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEe--c-CccccCCccccccEEEeCHHHHHHH
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIV--R-DVSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~--~-~~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                        ..++.+.......   . ..+ +.|++.  . ......+++|++++.|+++++|.+.
T Consensus        96 --~~lg~l~~~~~~~---~-~~V-~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_          96 --TLLGELDDVFTPV---G-FHV-TPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             --EEEEECCCEEETT---T-EEE-EEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred             --EEeecccceeecc---c-cEE-EEEEEEECCccccccccCCcceEEEeccHHHHhcC
Confidence              4455442211111   1 222 323332  2 2233455689999999999998764

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.67  E-value=1.9e-17  Score=129.59  Aligned_cols=109  Identities=11%  Similarity=0.100  Sum_probs=69.1

Q ss_pred             EEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           46 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        46 ~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      +++++++|.+ +++||.||+..    +|.|.+| ||+++.||+         +.+||+||++||||+++.....     .
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~~----~~~W~lP-gG~ie~gEs---------~~~aa~RE~~EEtGi~~~~~~~-----~   64 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWKA----SSGWGFP-KGKIDKDES---------DVDCAIREVYEETGFDCSSRIN-----P   64 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESST----TCCCBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCTTTCC-----T
T ss_pred             EEEEEEEECCCCEEEEEEEeCC----CCCEECC-cccccCCCC---------HHHHHHHHHHHHhCCCceeeee-----c
Confidence            5677888865 68999988632    5789999 999999999         8999999999999999764321     1


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec--Ccccc-CCccccccEEEeCHHHHHHHHHh
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVN-PNPDEVAEYKYVNREQLKELLRK  178 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~-~~~~Ev~~~~Wv~~eel~~~~~~  178 (225)
                      ..+.......     ....++++...  +.... .+.+|+.+++|+++++|+++...
T Consensus        65 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~~~  116 (151)
T d2a6ta2          65 NEFIDMTIRG-----QNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN  116 (151)
T ss_dssp             TCEEEEEETT-----EEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC--
T ss_pred             ceEEeecccC-----ceEEEEEEEEeccCCcccccCCCccceEEEEEHHHhhhhhhc
Confidence            1121121111     22222222222  22222 34579999999999999876544

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.2e-16  Score=120.16  Aligned_cols=112  Identities=25%  Similarity=0.252  Sum_probs=73.5

Q ss_pred             eeEEEEEEE---------eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC
Q 027303           44 HRAFSVFLF---------NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  114 (225)
Q Consensus        44 h~~v~v~i~---------d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~  114 (225)
                      -++++++++         +.++++||.||+..    .+.|.+| ||+++.|||         +.+||+||++||||+.+.
T Consensus         8 ~~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~----~~~W~lP-gG~ie~gEt---------~~~aa~REl~EEtG~~~~   73 (153)
T d1xsba_           8 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDG----IHHWTPP-KGHVEPGED---------DLETALRATQEEAGIEAG   73 (153)
T ss_dssp             EEEEEEEEEEECSSCSSSSTTEEEEEEEESST----TCCEECC-EEECCSSSC---------HHHHHHHHHHHTTSCCTT
T ss_pred             hheeEEEEEeccccccccCCCCEEEEEEecCC----CCcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCccc
Confidence            366777777         34568999998754    3679998 999999999         899999999999999986


Q ss_pred             CCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEe--cC-ccccCCccccccEEEeCHHHHHHHH
Q 027303          115 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIV--RD-VSVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       115 ~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~--~~-~~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                      .+.... .+.....+...  +.   .....+|...  .. ..+. .++|+.+++|++++++.+++
T Consensus        74 ~~~~~~-~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~  131 (153)
T d1xsba_          74 QLTIIE-GFKRELNYVAR--NK---PKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLA  131 (153)
T ss_dssp             TEEECS-SCCEEEEEESS--SC---EEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHT
T ss_pred             eeeeec-cceeeeccccc--Cc---eeEEEEEEEEEeecccccC-CCcceeEEEEEEHHHHHHhc
Confidence            422100 01111222221  11   2222233332  22 2333 34789999999999999874

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.67  E-value=2.6e-17  Score=129.03  Aligned_cols=114  Identities=20%  Similarity=0.215  Sum_probs=77.1

Q ss_pred             cceeEEEEEEE--eCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           42 LLHRAFSVFLF--NSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        42 ~~h~~v~v~i~--d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      ..+.+|.++|+  +++ .++||++|+..  .++|.|.+| ||+++.||+         +++||+||++||||+.+..   
T Consensus         8 ~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lP-GG~ie~~Es---------~~~aa~REl~EEtGl~~~~---   72 (147)
T d2fb1a2           8 TFYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLM-GGFVQKDES---------VDDAAKRVLAELTGLENVY---   72 (147)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECE-EEECCTTSC---------HHHHHHHHHHHHHCCCSCE---
T ss_pred             CcceEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCc-EeeecCCCC---------HHHHHHHHHHHHhCCcccc---
Confidence            34566666665  432 37999999743  367999999 999999999         8999999999999998652   


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHH
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL  175 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~  175 (225)
                        +..++.+  ..+.... ..+.+..+|.+... .......+|..+++|+++++++++
T Consensus        73 --~~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~lp~l  125 (147)
T d2fb1a2          73 --MEQVGAF--GAIDRDP-GERVVSIAYYALININEYDRELVQKHNAYWVNINELPAL  125 (147)
T ss_dssp             --EEEEEEE--CCTTSSS-SSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCB
T ss_pred             --eeeeeEe--cCCcccC-CCceEEEEEEEEecCCcccCCCcchhheEEecHHhchhc
Confidence              3444443  3333221 12334444555432 233345568889999999988643

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=7.9e-16  Score=121.98  Aligned_cols=112  Identities=18%  Similarity=0.220  Sum_probs=74.9

Q ss_pred             eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303           45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  124 (225)
Q Consensus        45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l  124 (225)
                      .+|++++++ +|++||+++.... ...+.|++| ||++++||+         +++||+||++||||+.+.      +..+
T Consensus        25 ~aV~vl~~~-~~~vlLv~q~R~~-~~~~~~elP-~G~ve~gE~---------~~~aA~REl~EEtG~~~~------~~~l   86 (158)
T d1v8ya_          25 PAVAVIALR-EGRMLFVRQMRPA-VGLAPLEIP-AGLIEPGED---------PLEAARRELAEQTGLSGD------LTYL   86 (158)
T ss_dssp             CEEEEEEEE-TTEEEEEECCBTT-TTBCCBBCS-EEECCTTCC---------HHHHHHHHHHHHHSEEEE------EEEE
T ss_pred             CEEEEEEEE-CCEEEEEEeeecC-CCCceEecc-hhhccccCC---------HHHHHHHHHHhhcCCcce------eeee
Confidence            467777776 5889987653222 234689999 999999999         799999999999999754      3445


Q ss_pred             eEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          125 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       125 ~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      +.+ |..+   +.. .+.+++|++..  .....++++|..++.|++++|+.+++.++
T Consensus        87 ~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~d~~E~~ev~w~~~~e~~~~i~~g  138 (158)
T d1v8ya_          87 FSY-FVSP---GFT-DEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRG  138 (158)
T ss_dssp             EEE-ESCT---TTB-CCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTT
T ss_pred             cce-ecCC---Ccc-eEEEEEEEEccccccccCCCCCeeEEEEEEEHHHHHHHHHCC
Confidence            543 3222   222 33456666543  23455667888999999999999999986

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.65  E-value=2.7e-17  Score=127.16  Aligned_cols=125  Identities=16%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             EEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeE
Q 027303           47 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR  126 (225)
Q Consensus        47 v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~  126 (225)
                      ++++|++ +|++||+||.     .+|.|.+| ||+++.||+         +.+||+||++||||+++....... .+...
T Consensus         4 a~~vi~~-d~kvLl~~r~-----~~~~w~lP-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~   66 (152)
T d1k2ea_           4 TSGVLVE-NGKVLLVKHK-----RLGVYIYP-GGHVEHNET---------PIEAVKREFEEETGIVVEPIGFTY-GIIDE   66 (152)
T ss_dssp             EEEECEE-TTEEEEEECT-----TTCSEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEECCCCC-CCBSS
T ss_pred             EEEEEEE-CCEEEEEEEc-----CCCeEECC-eeEEeCCcc---------HHHHHHHHHHHHHCCceeeeEEEE-EEecc
Confidence            3444554 5899999985     35889999 999999999         899999999999999976432100 00000


Q ss_pred             EEEEcCCCCCCcceEEEEEEEEecC---------ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 027303          127 ILYKAPSDGKWGEHELDYLLFIVRD---------VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  197 (225)
Q Consensus       127 ~~y~~~~~~~~~e~~~~~v~~~~~~---------~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~  197 (225)
                      ..+..+    .. ......+.....         ....++.+|+.+++|++++++.++           .+.|..+.++.
T Consensus        67 ~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~l~  130 (152)
T d1k2ea_          67 NAVERP----MP-LVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRI-----------ETFPNVRKVVS  130 (152)
T ss_dssp             SEEECC----CC-SEEEEEEEECSSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGS-----------CBSTTHHHHHH
T ss_pred             ccccCc----ce-EEEEEEEEecCCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhC-----------CCCHHHHHHHH
Confidence            111111    00 011111111110         011245678999999999999764           35566666666


Q ss_pred             HHHHHHH
Q 027303          198 NFLFKWW  204 (225)
Q Consensus       198 ~~l~~~~  204 (225)
                      ..+..+.
T Consensus       131 ~~~~~l~  137 (152)
T d1k2ea_         131 LALSTLY  137 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5544443

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=5.8e-15  Score=122.12  Aligned_cols=138  Identities=17%  Similarity=0.196  Sum_probs=88.8

Q ss_pred             eEEEEEEEeC-CCeEEEeeecCCC----CCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303           45 RAFSVFLFNS-KYELLLQQRSGTK----VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  119 (225)
Q Consensus        45 ~~v~v~i~d~-~g~vLL~rRs~~k----~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~  119 (225)
                      .+|++++++. +++++|.++-...    ...+..|++| +|.+++||+         +++||+|||+||||+.+.     
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElP-AG~id~gE~---------p~~aA~REL~EEtG~~~~-----  122 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVK-----  122 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCC-----
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeec-eeecCCCcC---------HHHHHHHHHHhhhccccc-----
Confidence            5677777765 4678876543211    0123478999 899999999         799999999999999976     


Q ss_pred             ceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc------cccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303          120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV------SVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR  193 (225)
Q Consensus       120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~------~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~  193 (225)
                      .+.+++.+ |..+   +.+ .+.+++|++..+.      ....+++|..++.|++++|+.+++.++       .+....-
T Consensus       123 ~l~~l~~~-~~sp---g~~-~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g-------~I~da~t  190 (209)
T d1g0sa_         123 RTKPVLSF-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG-------KIDNAAS  190 (209)
T ss_dssp             CEEEEEEE-ESCT---TTB-CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT-------SSCBHHH
T ss_pred             ceeecccc-ccCC---ccc-CCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcC-------CCCcHHH
Confidence            46677765 4333   233 3456777765321      122456677889999999999999986       3443333


Q ss_pred             HHHHHHHHHHHhhhcc
Q 027303          194 LVVDNFLFKWWDHLEK  209 (225)
Q Consensus       194 ~~~~~~l~~~~~~~~~  209 (225)
                      .+.-.|+....+.|++
T Consensus       191 i~al~~~~l~~~~lr~  206 (209)
T d1g0sa_         191 VIALQWLQLHHQALKN  206 (209)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHh
Confidence            3333455444454543

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=7.7e-16  Score=126.80  Aligned_cols=139  Identities=11%  Similarity=0.023  Sum_probs=83.6

Q ss_pred             ceEEEE-cCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCC-CCCCh
Q 027303           11 DRCILV-DENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPL-YRESE   88 (225)
Q Consensus        11 E~~~~~-d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve-~gEs~   88 (225)
                      .+++++ |+...+.|..-.+++..         .+.+|+++.++.+|++||+++... ......|++| ||+++ +||+ 
T Consensus        13 ~~~~v~~d~v~~pdG~~~~~~~v~---------~~~~V~vl~~~~~~~ilLvrq~R~-~~~~~~welP-aG~ie~~gE~-   80 (202)
T d1mqea_          13 AIFALRRDQVRMPGGGIVTREVVE---------HFGAVAIVAMDDNGNIPMVYQYRH-TYGRRLWELP-AGLLDVAGEP-   80 (202)
T ss_dssp             SSEEEEEEEEC-----CEEEEEEE---------ECCEEEEEECCTTSEEEEEEEEET-TTTEEEEECC-EEECCSTTCC-
T ss_pred             CEEEEEEEEEECCCCCEEEEEEEE---------cCCeEEEEEECCCCEEEEEEeccc-ccCceEEecc-ccccccCCCC-
Confidence            344444 34455666553343321         235788888888899999875321 1233579999 89999 7999 


Q ss_pred             hhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec---Ccccc-CCccccccE
Q 027303           89 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR---DVSVN-PNPDEVAEY  164 (225)
Q Consensus        89 ~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~---~~~~~-~~~~Ev~~~  164 (225)
                              +++||+||++||||+.+.     .+.+++.+ +..   .++. .+.+++|++..   ..... .+++|..++
T Consensus        81 --------~~~aA~REl~EETG~~~~-----~~~~l~~~-~~~---~g~~-~~~~~~fla~~~~~~~~~~~~~eee~i~v  142 (202)
T d1mqea_          81 --------PHLTAARELREEVGLQAS-----TWQVLVDL-DTA---PGFS-DESVRVYLATGLREVGRPEAHHEEADMTM  142 (202)
T ss_dssp             --------HHHHHHHHHHHHHCEEEE-----EEEEEEEE-CSC---TTTB-CCCEEEEEEEEEEECCC----------CE
T ss_pred             --------HHHHHHHHHhhccccccc-----cceEeeee-ecc---CccC-CcEEEEEEEEeccccCCCCCCCccceEEE
Confidence                    799999999999999876     34566654 221   2233 23345555442   22222 233456689


Q ss_pred             EEeCHHHHHHHHHhc
Q 027303          165 KYVNREQLKELLRKA  179 (225)
Q Consensus       165 ~Wv~~eel~~~~~~~  179 (225)
                      .|+|++|+.+++..+
T Consensus       143 ~w~~~~e~~~~i~~G  157 (202)
T d1mqea_         143 GWYPIAEAARRVLRG  157 (202)
T ss_dssp             EEEEHHHHHHHHTTT
T ss_pred             EEEEHHHHHHHHHcC
Confidence            999999999999886

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=7.9e-16  Score=125.04  Aligned_cols=112  Identities=20%  Similarity=0.124  Sum_probs=77.9

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++.++... +++++|+++... ......|++| ||++++||+         +++||+||++||||+.+.     .+.+++
T Consensus        50 ~v~vi~~~-~~~vlLvrq~R~-~~~~~~~elP-~G~ie~gE~---------p~~aA~REl~EEtG~~~~-----~~~~l~  112 (186)
T d1vhza_          50 AVMIVPIV-DDHLILIREYAV-GTESYELGFS-KGLIDPGES---------VYEAANRELKEEVGFGAN-----DLTFLK  112 (186)
T ss_dssp             EEEEEEEE-TTEEEEEEEEET-TTTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHSEEEE-----EEEEEE
T ss_pred             EEEEEEcc-CCEEEEEEeeec-CCCceEeecc-cccCCCCcC---------HHHHHHHHHHHHhccccc-----cceecc
Confidence            33444344 577888764321 1234679999 999999999         799999999999999976     355666


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                      .+ |..+   +.. .+.+++|++..  ......+++|..++.|+|++++.+++.++
T Consensus       113 ~~-~~~~---g~~-~~~~~~~~a~~~~~~~~~~de~E~~~~~~~~~~e~~~~i~~g  163 (186)
T d1vhza_         113 KL-SMAP---SYF-SSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDP  163 (186)
T ss_dssp             EE-ECCT---TTC-CCEEEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             ee-eccc---ccc-ceEEEEEEEEecccccCCCCCCcEEEEEEEeHHHHHHHHHcC
Confidence            65 3332   222 22345555442  34455677889999999999999998875

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.59  E-value=2.2e-15  Score=123.90  Aligned_cols=115  Identities=17%  Similarity=0.229  Sum_probs=77.7

Q ss_pred             eeEEEEEE--EeCC-C--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           44 HRAFSVFL--FNSK-Y--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        44 h~~v~v~i--~d~~-g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      +.+|.++|  ++.+ |  +|||+||+..  .+.|.|.+| ||+++.|||         +.+||.||++||||+.+...  
T Consensus        37 ~v~vd~vi~~~~~~~~~l~VLLv~R~~~--p~~g~W~lP-GG~ve~gEs---------~~eaa~REl~EEtGl~~~~~--  102 (202)
T d2fmla2          37 SLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALP-GGFVNRNES---------TEDSVLRETKEETGVVISQE--  102 (202)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECC-EEECCTTSC---------HHHHHHHHHHHHHCCCCCGG--
T ss_pred             ccEEEEEEEEEecCCCeeEEEEEEecCC--CCCCcEECC-EEeecCCCC---------HHHHhhhhhHhhcCeeeecc--
Confidence            45555554  4543 2  7999999743  467999999 999999999         89999999999999997632  


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHH
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELL  176 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~  176 (225)
                       .+..+..+  ..+..+.. .+.+..+|.+..........+|+.+++|++++++....
T Consensus       103 -~l~~~~~~--~~~~r~~~-~~~i~~~~~~~~~~~~~~~~~e~~~~~Wf~ld~l~~~~  156 (202)
T d2fmla2         103 -NIEQLHSF--SRPDRDPR-GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHI  156 (202)
T ss_dssp             -GEEEEEEE--CCTTSSTT-SSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEE
T ss_pred             -eeeeeeec--ccCCcccc-ceEEEEEEEEEeCCCCcCCCcceeeEEEEeHHHCcchh
Confidence             34444443  33322111 13344455555443333445789999999999987643

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.57  E-value=2e-15  Score=114.96  Aligned_cols=117  Identities=10%  Similarity=0.060  Sum_probs=77.1

Q ss_pred             EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303           46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  125 (225)
Q Consensus        46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~  125 (225)
                      ++.++|.|.+|++||+||+.. ..++|+|+|| ||+++.+|+          .+++.||++||+|+++....     .++
T Consensus         6 v~~~vi~~~~g~iLl~kR~~~-~~~~GlWefP-~g~~e~~~~----------~e~l~rel~ee~gi~v~~~~-----~l~   68 (127)
T d1rrqa2           6 LAVAVLADDEGRVLIRKRDST-GLLANLWEFP-SCETDGADG----------KEKLEQMVGEQYGLQVELTE-----PIV   68 (127)
T ss_dssp             EEEEEEEESSSEEEEEECCSS-STTTTCEECC-EEECTTTCC----------HHHHHHTTC----CEEEECS-----CCE
T ss_pred             EEEEEEEECCCEEEEEECCCC-CCCCCceecc-cccccCCCC----------HHHHHHHhhhhcceEEEecc-----ccc
Confidence            345556788899999999754 5789999999 899987777          78999999999999976322     244


Q ss_pred             EEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303          126 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  199 (225)
Q Consensus       126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~  199 (225)
                      .+.+....     .....++|.+....    ...+..+++|++++++.++           .|+...+.+++.|
T Consensus        69 ~~~H~fsh-----~~~~~~~~~~~~~~----~~~~~~~~~Wv~~~el~~~-----------~~p~~~~Ki~~~~  122 (127)
T d1rrqa2          69 SFEHAFSH-----LVWQLTVFPGRLVH----GGPVEEPYRLAPEDELKAY-----------AFPVSHQRVWREY  122 (127)
T ss_dssp             EEEEECSS-----EEEEEEEEEEEEEC----CSCCCTTEEEEEGGGGGGS-----------CCCHHHHHHHHHH
T ss_pred             cceEecCC-----eEEEEEEEEEEECC----CCccccceEEeeHHHHhHC-----------CCChHHHHHHHHH
Confidence            44433221     01122445444321    1123467999999999664           5778888888777

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.9e-12  Score=105.08  Aligned_cols=114  Identities=15%  Similarity=0.118  Sum_probs=75.2

Q ss_pred             eEEEEEEEeC-CCeEEEeeecCC-----CCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303           45 RAFSVFLFNS-KYELLLQQRSGT-----KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  118 (225)
Q Consensus        45 ~~v~v~i~d~-~g~vLL~rRs~~-----k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~  118 (225)
                      .+|++++++. +++++|.+.-..     +....-.|++| ||.++ ||+         +++||+||++||||+.+.    
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~p-aG~~d-~e~---------p~~aA~REL~EEtG~~~~----  108 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESC-AGLLD-NDE---------PEVCIRKEAIEETGYEVG----  108 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECE-EEECT-TSC---------HHHHHHHHHHHHHSCCCC----
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCc-EEecC-CCC---------HHHHHHHHHHHhhCCcce----
Confidence            5888888875 468877653211     11122356666 77776 777         589999999999999976    


Q ss_pred             CceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc-----cccCCccccccEEEeCHHHHHHHHHhc
Q 027303          119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-----SVNPNPDEVAEYKYVNREQLKELLRKA  179 (225)
Q Consensus       119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-----~~~~~~~Ev~~~~Wv~~eel~~~~~~~  179 (225)
                       .+.+++.+ |..+   +.+ .+.+|+|.+....     ....+++|..++.|+|++|+.+++.++
T Consensus       109 -~~~~lg~~-~~sp---G~~-~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g  168 (189)
T d1viua_         109 -EVRKLFEL-YMSP---GGV-TELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTG  168 (189)
T ss_dssp             -CCEEEEEE-ESCT---TTB-CCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHT
T ss_pred             -EEEEccee-ecCc---ccc-CceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcC
Confidence             46778776 5433   233 3456777765321     122456788899999999999999996

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.4e-12  Score=97.89  Aligned_cols=125  Identities=12%  Similarity=0.089  Sum_probs=78.3

Q ss_pred             eEEEEEEEe---CCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303           45 RAFSVFLFN---SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  121 (225)
Q Consensus        45 ~~v~v~i~d---~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l  121 (225)
                      ..+.+++.+   .+|++||+||+.+ ..++|+|+|| ||.++.+|+         ..++|.||..+|.+.....   ...
T Consensus        13 ~~~~~vv~~~~~~~~~iLl~kR~~~-g~l~GlWefP-~~~~~~~e~---------~~~~~~~~~~~e~~~~~~~---~~~   78 (142)
T d1x51a1          13 SSATCVLEQPGALGAQILLVQRPNS-GLLAGLWEFP-SVTWEPSEQ---------LQRKALLQELQRWAGPLPA---THL   78 (142)
T ss_dssp             EEEEEEEEEECSSSEEEEEEECCCC-STTCSCEECC-EEECCSSHH---------HHHHHHHHHHHHHSCCCCS---TTC
T ss_pred             EEEEEEEEecCCCCCEEEEEECCCC-CCCCcceeee-EeeccCCcc---------hhHHHHHHHHHHhccCcce---eee
Confidence            334444444   2579999999754 5789999999 899999999         6777776665555544431   122


Q ss_pred             eeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303          122 TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  200 (225)
Q Consensus       122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l  200 (225)
                      ..++.+.+....     .+...++|.+..... .+...+..+++|++++++.++           .++...+.+++.|-
T Consensus        79 ~~~~~v~H~fsH-----~~~~~~v~~~~~~~~-~~~~~~~~~~~W~~~~el~~~-----------~lp~~~~Kil~~~~  140 (142)
T d1x51a1          79 RHLGEVVHTFSH-----IKLTYQVYGLALEGQ-TPVTTVPPGARWLTQEEFHTA-----------AVSTAMKKVFRVYQ  140 (142)
T ss_dssp             EECCCBCCBCSS-----CEEEEEEEEEECSSC-CCCCCCCTTEEEEEHHHHHHS-----------CCCHHHHHHHHHHH
T ss_pred             eeeccceeccCC-----cceEEEEEEEEEeCC-CcccccCccCEEeeHHHcccc-----------CCCHHHHHHHHHHh
Confidence            334333222110     022234555554321 122356789999999999875           57787888877763

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.31  E-value=1.6e-12  Score=106.33  Aligned_cols=113  Identities=16%  Similarity=0.068  Sum_probs=70.8

Q ss_pred             CCcceeEEEEEEEeCCC-----------eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhH
Q 027303           40 LNLLHRAFSVFLFNSKY-----------ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE  108 (225)
Q Consensus        40 ~~~~h~~v~v~i~d~~g-----------~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EE  108 (225)
                      .+ ++.+++++++.+++           .+|+++|.      .|.|.+| ||++++||++        .++||.||+.||
T Consensus        17 ~g-~r~a~~~~~~~~~~~~~~~~~~~~~~vl~~~r~------~g~~~~p-gg~~~~~e~~--------~~~~~~re~~ee   80 (196)
T d1u20a1          17 EG-YKHACHALLHAPSQAKLFDRVPIRRVLLMMMRF------DGRLGFP-GGFVDTRDIS--------LEEGLKRELEEE   80 (196)
T ss_dssp             SS-CEEEEEEEEEEECCCEETTTEECCEEEEEEEET------TSCEECS-EEEECTTTSC--------HHHHHHHHHHHH
T ss_pred             CC-cceEEEEEEEcCCCceEEEEecCCcEEEEEEec------CCcEECC-ccccCCCCCc--------HHHHHHHHHHHH
Confidence            44 55566777765443           36677763      5999999 9999999975        588999999999


Q ss_pred             hCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc-----------cccCCccccccEEEeCHHHHHH
Q 027303          109 LGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-----------SVNPNPDEVAEYKYVNREQLKE  174 (225)
Q Consensus       109 tGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-----------~~~~~~~Ev~~~~Wv~~eel~~  174 (225)
                      ||+.+..+.+....+..+..+  + ...   ..+.++|.+....           .......|+.+..|||+.++.+
T Consensus        81 ~g~~~~~~~l~~~~~~~~~~~--~-~~~---~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1          81 LGPALATVEVTEDDYRSSQVR--E-HPQ---KCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             HCGGGGGCCCCGGGEEEEEEE--C-TTS---CEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             hCccceeEEEEeeEEEEeccC--C-CCC---EEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            999987554322222222111  1 111   2334455544211           1123346788999999987754

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.7e-11  Score=103.52  Aligned_cols=44  Identities=11%  Similarity=0.066  Sum_probs=38.7

Q ss_pred             eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCC
Q 027303           57 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  115 (225)
Q Consensus        57 ~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~  115 (225)
                      ++|+++|..     .|.|.+| ||++++||+         +.+||+||+.||||+.+..
T Consensus       140 qvLlIkR~d-----~g~WaLP-GG~Vd~GEs---------~~~Aa~REl~EETGl~~~~  183 (292)
T d1q33a_         140 QFVAIKRKD-----CGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQK  183 (292)
T ss_dssp             EEEEEECTT-----TCSEECC-CEECCTTCC---------HHHHHHHHHHHHHSCGGGS
T ss_pred             EEEEEEecC-----CCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCccccc
Confidence            478888863     3789999 999999999         8999999999999999764