Citrus Sinensis ID: 027314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MSDSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVGI
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccEccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccc
Coil and Loop (DISEMBL)
msdsvslidppptesrdaARIADVKAWLASQFEAsakevpafeytsrsVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGlaqeslpsnvVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGqleddvapceAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVGI
Flexible Loop (DISEMBL)
msdsvslidppptesrdaaRIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRktaveekrakvqkeskilldytRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVGI
Low Complexity Region (SEG)
MSDSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVGI
Disordered region (IsUnstruct)
********************IADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVE****KVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVG*
Disordered Region (DISOPRED)
************************KAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADF********************************VSSAQVLANVANLLNIRDTELSSFLVAMGDIS*********************DYTRKAIARLTYLK*************************VMAS*E***********VSIFCYHY***
Disordered Region (DISEMBL)
****************DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVGI
Disordered Region (DISPRO)
*****************AARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVGI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9R0A8	278	HAUS augmin-like complex	yes	no	0.497	0.402	0.321	2e-09
Q8BHX1	278	HAUS augmin-like complex	yes	no	0.48	0.388	0.319	1e-08
Q2TBK4	278	HAUS augmin-like complex	yes	no	0.506	0.410	0.316	2e-08
Q96CS2	278	HAUS augmin-like complex	yes	no	0.808	0.654	0.256	9e-08

>sp|Q9R0A8|HAUS1_RAT HAUS augmin-like complex subunit 1 OS=Rattus norvegicus GN=Haus1 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 3/115 (2%)

Query: 24  VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
           V  WL   F      +P +E  +R+   LY+L+  ++ + +  N+V  D RQKA+EY S+
Sbjct: 11  VAEWLKKIF--GDHPIPQYEMNARTTEILYHLSERNRVRDRDVNLVIEDLRQKASEYESE 68

Query: 84  AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDIS 137
           A R+ + L E+V  +  +L +        L + A  L I+DT L+SF+ A+ D++
Sbjct: 69  AKRLEDFLMESVNFSPANLSNTGSRFLNALVDSAIALEIKDTSLASFIPAVNDLT 123

Contributes to mitotic spindle assembly, maintenance of centrosome integrity and completion of cytokinesis as part of the HAUS augmin-like complex.
Rattus norvegicus (taxid: 10116)

>sp|Q8BHX1|HAUS1_MOUSE HAUS augmin-like complex subunit 1 OS=Mus musculus GN=Haus1 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 11/119 (9%)

Query: 24  VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
           V  WL   F      +P +E  SR+   LY+L+  ++ + +  ++V  D +QKA+EY S+
Sbjct: 11  VAEWLKKVF--GDHPIPQYEMNSRTTEILYHLSERNRVRDRDISLVIEDLKQKASEYESE 68

Query: 84  AARIREIL-ENVGLAQESLPSNVVSSA----QVLANVANLLNIRDTELSSFLVAMGDIS 137
           A R+ + L E+V  +    P+N+  S       L + A  L I+DT L+SF+ A+ D++
Sbjct: 69  AKRLEDFLMESVNFS----PANLSKSGSRFLNALVDSAIALEIKDTSLASFIPAVNDLT 123

Contributes to mitotic spindle assembly, maintenance of centrosome integrity and completion of cytokinesis as part of the HAUS augmin-like complex.

Mus musculus (taxid: 10090)

>sp|Q2TBK4|HAUS1_BOVIN HAUS augmin-like complex subunit 1 OS=Bos taurus GN=HAUS1 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 22  ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
           A V AWL   F      +P +E  + +   LYNL+  ++ + +   +V  D +QKA EY 
Sbjct: 9   AQVAAWLKKIF--GDHPIPQYEVNAWTTEILYNLSERNRIRDRDVYLVTEDLKQKAKEYE 66

Query: 82  SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDIS 137
           S+A  ++++L E+V  +  SL S        L + A +L  +DT L+SF+ A+ D++
Sbjct: 67  SEAKHLQDLLMESVNFSPASLSSTGSRYLNALVDSAVVLETKDTSLASFIPAVNDLT 123

Contributes to mitotic spindle assembly, maintenance of centrosome integrity and completion of cytokinesis as part of the HAUS augmin-like complex.

Bos taurus (taxid: 9913)

>sp|Q96CS2|HAUS1_HUMAN HAUS augmin-like complex subunit 1 OS=Homo sapiens GN=HAUS1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 101/203 (49%), Gaps = 21/203 (10%)

Query: 12  PTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAA 71
           P E R+      V AWL   F      +P +E   R+   L++L+  ++ + +   +V  
Sbjct: 3   PQEERETQ----VAAWLKKIF--GDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIE 56

Query: 72  DFRQKAAEYRSQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFL 130
           D +QKA+EY S+A  ++++L E+V  +  +L S        L + A  L  +DT L+SF+
Sbjct: 57  DLKQKASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFI 116

Query: 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE---- 186
            A+ D++   + +   ++K + E KI L+   K +     L++    L++DV   E    
Sbjct: 117 PAVNDLT---SDLFRTKSKSE-EIKIELEKLEKNLTATLVLEKC---LQEDVKKAELHLS 169

Query: 187 ---AQMENWKTNLAVMASKERQY 206
              A+++N + N+  + +K  ++
Sbjct: 170 TERAKVDNRRQNMDFLKAKSEEF 192

Contributes to mitotic spindle assembly, maintenance of centrosome integrity and completion of cytokinesis as part of the HAUS augmin-like complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
359477675	298	PREDICTED: HAUS augmin-like complex subu	0.951	0.718	0.820	7e-99
255576552	304	Coiled-coil domain-containing protein, p	0.88	0.651	0.883	4e-98
224086928	290	predicted protein [Populus trichocarpa]	0.88	0.682	0.888	1e-97
359487003	298	PREDICTED: HAUS augmin-like complex subu	0.951	0.718	0.788	7e-95
297824081	298	hypothetical protein ARALYDRAFT_903446 [	0.884	0.667	0.804	2e-88
79324879	299	uncharacterized protein [Arabidopsis tha	0.88	0.662	0.808	4e-88
18405674	298	uncharacterized protein [Arabidopsis tha	0.884	0.667	0.804	4e-88
449494690	297	PREDICTED: HAUS augmin-like complex subu	0.92	0.696	0.764	7e-87
449437820	297	PREDICTED: HAUS augmin-like complex subu	0.92	0.696	0.768	7e-87
449506670	297	PREDICTED: HAUS augmin-like complex subu	0.92	0.696	0.759	4e-86

>gi|359477675|ref|XP_002285380.2| PREDICTED: HAUS augmin-like complex subunit 1-like [Vitis vinifera] gi|147795301|emb|CAN69456.1| hypothetical protein VITISV_036572 [Vitis vinifera] gi|296083695|emb|CBI23684.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 195/217 (89%), Gaps = 3/217 (1%)

Query: 1   MSDSVSLIDPPPTESR---DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLAT 57
           MSD +S  DP   ES+   D+ RI+DVKAWLASQF+A+ K+VP FEYT R++AHL+NL+T
Sbjct: 1   MSDIISGSDPSVIESKSNFDSGRISDVKAWLASQFDAAGKDVPDFEYTPRTIAHLHNLST 60

Query: 58  LSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVAN 117
           LSQAKT+AA IVA DFRQKAAEYR QAAR+REILENVGLAQE LPSNVV+SAQ LANVAN
Sbjct: 61  LSQAKTQAAGIVATDFRQKAAEYRCQAARVREILENVGLAQEGLPSNVVASAQCLANVAN 120

Query: 118 LLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQ 177
           LLN RDTELSSFLVAMGD+SLRKT VEEKRAKVQKESKILLDYTRKAIARLTYLKRTL Q
Sbjct: 121 LLNTRDTELSSFLVAMGDMSLRKTGVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLAQ 180

Query: 178 LEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214
           LEDDVAPCEAQMENWKTNLA+M SKERQYLQQY+NYK
Sbjct: 181 LEDDVAPCEAQMENWKTNLAIMVSKERQYLQQYSNYK 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576552|ref|XP_002529167.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223531391|gb|EEF33226.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 175/198 (88%), Positives = 187/198 (94%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DA+RI++VKAWL SQFEA+ K+VP FEYT RS++HLYNLATLSQ+KT AANI+A DFRQK
Sbjct: 26  DASRISEVKAWLTSQFEAAGKDVPEFEYTQRSISHLYNLATLSQSKTNAANILANDFRQK 85

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A EYR+QAARIREILENVGLAQESLPSNVV SAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct: 86  ATEYRAQAARIREILENVGLAQESLPSNVVGSAQVLANVANLLNIRDTELSSFLVAMGDI 145

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAK QK+SKILLDYTRKAIARLTYLKRTL QLEDDVAPCEAQMENWKTNL
Sbjct: 146 SLRKTGVEEKRAKAQKDSKILLDYTRKAIARLTYLKRTLAQLEDDVAPCEAQMENWKTNL 205

Query: 197 AVMASKERQYLQQYNNYK 214
           AVMASKERQYLQQY+NYK
Sbjct: 206 AVMASKERQYLQQYSNYK 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086928|ref|XP_002308008.1| predicted protein [Populus trichocarpa] gi|222853984|gb|EEE91531.1| predicted protein [Populus trichocarpa]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/198 (88%), Positives = 185/198 (93%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DA RIA+VKAWL SQF+A+ K+VP FEYT RS+AHLYNLA  SQAKT+AANIVA DFRQK
Sbjct: 12  DAGRIAEVKAWLTSQFDAAGKDVPEFEYTPRSIAHLYNLAAASQAKTQAANIVANDFRQK 71

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A EYR+QAARIREILENVGLAQESLPSNVVSSAQVLANVAN LNIRDTELSSFLVAMGD+
Sbjct: 72  AVEYRAQAARIREILENVGLAQESLPSNVVSSAQVLANVANFLNIRDTELSSFLVAMGDL 131

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAKVQKESKILLDYTRKAIARLTYLKRTL QLEDDV PCEAQMENWKTNL
Sbjct: 132 SLRKTGVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLAQLEDDVPPCEAQMENWKTNL 191

Query: 197 AVMASKERQYLQQYNNYK 214
           AVMASKERQYLQQY+NYK
Sbjct: 192 AVMASKERQYLQQYSNYK 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487003|ref|XP_002264816.2| PREDICTED: HAUS augmin-like complex subunit 1-like [Vitis vinifera] gi|296084427|emb|CBI24986.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (902), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 171/217 (78%), Positives = 192/217 (88%), Gaps = 3/217 (1%)

Query: 1   MSDSVSLIDPPPTE---SRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLAT 57
           MSD++S  DP   E   + D+ RI+DVKAWLASQ++A+ K+VP FEYT R++  L+NL+T
Sbjct: 1   MSDNISGSDPSVIEIESNFDSGRISDVKAWLASQYDAAGKDVPDFEYTPRTIGRLHNLST 60

Query: 58  LSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVAN 117
           LSQAKT+AA I+A DFRQKAAEYR QAAR+REILENVGL QE LPSNVV+SAQ LANVAN
Sbjct: 61  LSQAKTQAAGILATDFRQKAAEYRCQAARVREILENVGLPQEGLPSNVVASAQCLANVAN 120

Query: 118 LLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQ 177
           LLN RDTELSSFLVAMGD+SLRK+ VEEKRAKVQKESKILLDYTRKAIAR+TYLKR LGQ
Sbjct: 121 LLNTRDTELSSFLVAMGDMSLRKSEVEEKRAKVQKESKILLDYTRKAIARMTYLKRILGQ 180

Query: 178 LEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214
           LEDDVAPCEAQMENWKTNLA+MASKERQYLQQY NYK
Sbjct: 181 LEDDVAPCEAQMENWKTNLAIMASKERQYLQQYRNYK 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824081|ref|XP_002879923.1| hypothetical protein ARALYDRAFT_903446 [Arabidopsis lyrata subsp. lyrata] gi|297325762|gb|EFH56182.1| hypothetical protein ARALYDRAFT_903446 [Arabidopsis lyrata subsp. lyrata]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/199 (80%), Positives = 176/199 (88%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DAARI++VKAWL SQFEA+ KEVP FEYT RS+ HLYNLAT SQAK++AA IVA DFR K
Sbjct: 19  DAARISEVKAWLTSQFEAAGKEVPNFEYTHRSITHLYNLATASQAKSQAATIVANDFRLK 78

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A+EYR+QAARIREILE+ G++QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct: 79  ASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 138

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAK QKES  LLDYTRKAI RLTYLK+ L QLEDDV PCE+QMENWKTNL
Sbjct: 139 SLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQLEDDVVPCESQMENWKTNL 198

Query: 197 AVMASKERQYLQQYNNYKV 215
            VMA KE QY+QQY  Y++
Sbjct: 199 EVMAVKEEQYIQQYKKYEM 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324879|ref|NP_001031524.1| uncharacterized protein [Arabidopsis thaliana] gi|330254870|gb|AEC09964.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 160/198 (80%), Positives = 174/198 (87%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DAARI++VKAWL SQFEA  KEVP FEYT RS+ HLYNLAT SQAK++AA IVA DFR K
Sbjct: 19  DAARISEVKAWLTSQFEAVGKEVPNFEYTHRSITHLYNLATASQAKSQAATIVANDFRLK 78

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A+EYR+QAARIREILE+ G++QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct: 79  ASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 138

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAK QKES  LLDYTRKAI RLTYLK+ L QLEDDV PCE+QMENWKTNL
Sbjct: 139 SLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQLEDDVVPCESQMENWKTNL 198

Query: 197 AVMASKERQYLQQYNNYK 214
            VMA KE QY+QQY  Y+
Sbjct: 199 EVMAVKEEQYIQQYKKYE 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405674|ref|NP_565949.1| uncharacterized protein [Arabidopsis thaliana] gi|19715589|gb|AAL91618.1| At2g41350/F13H10.10 [Arabidopsis thaliana] gi|20197422|gb|AAC78538.2| expressed protein [Arabidopsis thaliana] gi|21537039|gb|AAM61380.1| unknown [Arabidopsis thaliana] gi|23506005|gb|AAN28862.1| At2g41350/F13H10.10 [Arabidopsis thaliana] gi|330254869|gb|AEC09963.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 160/199 (80%), Positives = 175/199 (87%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DAARI++VKAWL SQFEA  KEVP FEYT RS+ HLYNLAT SQAK++AA IVA DFR K
Sbjct: 19  DAARISEVKAWLTSQFEAVGKEVPNFEYTHRSITHLYNLATASQAKSQAATIVANDFRLK 78

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A+EYR+QAARIREILE+ G++QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct: 79  ASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 138

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAK QKES  LLDYTRKAI RLTYLK+ L QLEDDV PCE+QMENWKTNL
Sbjct: 139 SLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQLEDDVVPCESQMENWKTNL 198

Query: 197 AVMASKERQYLQQYNNYKV 215
            VMA KE QY+QQY  Y++
Sbjct: 199 EVMAVKEEQYIQQYKKYEM 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494690|ref|XP_004159620.1| PREDICTED: HAUS augmin-like complex subunit 1-like [Cucumis sativus]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 162/212 (76%), Positives = 183/212 (86%), Gaps = 5/212 (2%)

Query: 3   DSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAK 62
           DS S +   PT     +RIA+VK WL S+F  + KEVP FEYT  SV+HL+NL  LSQAK
Sbjct: 10  DSDSKMGSDPT-----SRIAEVKEWLGSEFGRAGKEVPDFEYTPFSVSHLHNLCNLSQAK 64

Query: 63  TKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIR 122
           T+AA I+A DFR KAAEYR+Q ARIREILE+VG+AQE+LPSNVVSSAQVLANVANLLNIR
Sbjct: 65  TRAAEILAKDFRLKAAEYRAQEARIREILESVGMAQENLPSNVVSSAQVLANVANLLNIR 124

Query: 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182
           DTELSSFLVAMGD SLRK +VEEKRAKV+K+SK+LLD+TRKAIARLTYLKRTL QLEDDV
Sbjct: 125 DTELSSFLVAMGDFSLRKISVEEKRAKVEKDSKVLLDHTRKAIARLTYLKRTLAQLEDDV 184

Query: 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYK 214
           APCEAQM+NWKTNLAVMA+KERQY+QQ  NYK
Sbjct: 185 APCEAQMDNWKTNLAVMAAKERQYMQQCANYK 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437820|ref|XP_004136688.1| PREDICTED: HAUS augmin-like complex subunit 1-like [Cucumis sativus]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 163/212 (76%), Positives = 184/212 (86%), Gaps = 5/212 (2%)

Query: 3   DSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAK 62
           DS S +   PT     +RIA+VK WL S+F  + KEVP FEYT  SV+HL+NL  LSQAK
Sbjct: 10  DSDSKLGSDPT-----SRIAEVKEWLGSEFGRAGKEVPDFEYTPFSVSHLHNLCNLSQAK 64

Query: 63  TKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIR 122
           T+AA I+A DFR KAAEYR+QAARIREILE+VG+AQE+L SNVVSSAQVLANVANLLNIR
Sbjct: 65  TRAAEILAKDFRLKAAEYRAQAARIREILESVGMAQENLSSNVVSSAQVLANVANLLNIR 124

Query: 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182
           DTELSSFLVAMGDISLRK +VEEKRAKV+K+SK+LLD+TRKAIARLTYLKRTL QLEDDV
Sbjct: 125 DTELSSFLVAMGDISLRKISVEEKRAKVEKDSKVLLDHTRKAIARLTYLKRTLAQLEDDV 184

Query: 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYK 214
           APCEAQM+NWKTNLAVMA+KERQY+QQ  NYK
Sbjct: 185 APCEAQMDNWKTNLAVMAAKERQYMQQCANYK 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506670|ref|XP_004162814.1| PREDICTED: HAUS augmin-like complex subunit 1-like [Cucumis sativus]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 184/212 (86%), Gaps = 5/212 (2%)

Query: 3   DSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAK 62
           D+ S +   PT     +RIA+VK WL S+F  + KE P FEYT  SV+HL+NL+ LSQAK
Sbjct: 10  DADSKLGSDPT-----SRIAEVKEWLGSEFGRAGKEAPDFEYTPFSVSHLHNLSNLSQAK 64

Query: 63  TKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIR 122
           T+AA I+A DFR KAAEYR+QAARIREILE+VG+AQE+L SNVVSSAQVLANVANLLNIR
Sbjct: 65  TRAAEILAKDFRLKAAEYRAQAARIREILESVGMAQENLSSNVVSSAQVLANVANLLNIR 124

Query: 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182
           DTELSSFLVAMGDISLRK +VEEKRAKV+K+SK+LLD+TRKAIARLTYLKRTL QLEDDV
Sbjct: 125 DTELSSFLVAMGDISLRKISVEEKRAKVEKDSKVLLDHTRKAIARLTYLKRTLAQLEDDV 184

Query: 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYK 214
           APCEAQM+NWKTNLAVMA+KERQY+QQ  NYK
Sbjct: 185 APCEAQMDNWKTNLAVMAAKERQYMQQCANYK 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2040247	299	AUG1 "AT2G41350" [Arabidopsis	0.88	0.662	0.808	1.6e-79
UNIPROTKB|F1NH00	299	HAUS1 "Uncharacterized protein	0.746	0.561	0.284	6e-14
ZFIN|ZDB-GENE-091204-387	306	haus1 "HAUS augmin-like comple	0.666	0.490	0.306	1.2e-13
UNIPROTKB|E2RPA4	278	HAUS1 "Uncharacterized protein	0.808	0.654	0.251	4.4e-13
RGD|619909	278	Haus1 "HAUS augmin-like comple	0.817	0.661	0.248	1.3e-12
UNIPROTKB|J9PAB4	290	HAUS1 "Uncharacterized protein	0.8	0.620	0.248	1.6e-12
UNIPROTKB|F1RPT0	278	HAUS1 "Uncharacterized protein	0.813	0.658	0.258	1.7e-12
UNIPROTKB|Q2TBK4	278	HAUS1 "HAUS augmin-like comple	0.808	0.654	0.251	3.9e-12
UNIPROTKB|Q96CS2	278	HAUS1 "HAUS augmin-like comple	0.831	0.672	0.247	3.9e-12
MGI|MGI:2385076	278	Haus1 "HAUS augmin-like comple	0.733	0.593	0.281	1e-11

TAIR|locus:2040247 AUG1 "AT2G41350" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 160/198 (80%), Positives = 174/198 (87%)

Query:    17 DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
             DAARI++VKAWL SQFEA  KEVP FEYT RS+ HLYNLAT SQAK++AA IVA DFR K
Sbjct:    19 DAARISEVKAWLTSQFEAVGKEVPNFEYTHRSITHLYNLATASQAKSQAATIVANDFRLK 78

Query:    77 AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
             A+EYR+QAARIREILE+ G++QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct:    79 ASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 138

Query:   137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
             SLRKT VEEKRAK QKES  LLDYTRKAI RLTYLK+ L QLEDDV PCE+QMENWKTNL
Sbjct:   139 SLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQLEDDVVPCESQMENWKTNL 198

Query:   197 AVMASKERQYLQQYNNYK 214
              VMA KE QY+QQY  Y+
Sbjct:   199 EVMAVKEEQYIQQYKKYE 216

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005819 "spindle" evidence=IDA

UNIPROTKB|F1NH00 HAUS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 53/186 (28%), Positives = 93/186 (50%)

Query:    24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
             + +WL   FE    +VP F+  +++   LY L   S+ + +  + +  D +++AAEY + 
Sbjct:    25 ITSWLKKTFE---NQVPQFDVNTKTTDLLYELVEYSEERERDVSFLIEDMKKRAAEYDAG 81

Query:    84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142
             A  ++ +L E++GL+  SL     +    L + A +L  +DT L+SF  A+ D +L   A
Sbjct:    82 AEYLQSLLTESLGLSPSSLSEEGTAHLNTLVDSAMILETKDTYLTSFFCAISDRTLELHA 141

Query:   143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASK 202
              E K  ++++    L++  +K  A L   K    QLE D       +E  KT+L +  +K
Sbjct:   142 AESKNKEMEQR---LVNLKKKLTATLVLEK----QLEKD-------LEKTKTHLEIEVAK 187

Query:   203 ERQYLQ 208
                 LQ
Sbjct:   188 SENRLQ 193

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0070652 "HAUS complex" evidence=IEA

ZFIN|ZDB-GENE-091204-387 haus1 "HAUS augmin-like complex, subunit 1" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 49/160 (30%), Positives = 77/160 (48%)

Query:    24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
             V  WL   F    + VP FE  +R+V  LY L    + + + A ++  D  QK  EY S 
Sbjct:    36 VSQWLRKVF--GQQTVPEFEVNTRTVEILYELVQNCETRCREAELLIQDHEQKTHEYSSD 93

Query:    84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142
              A ++E+L + VGL    L    V    VL   A +L +RDT L S++ A+  ++     
Sbjct:    94 GAHLQEVLLQGVGLQTGGLSKPTVDLLSVLEGTAEVLKLRDTSLGSYMPALNKLTNDVLE 153

Query:   143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182
              E+   K+Q+E    L   RK +     L++   +L+DD+
Sbjct:   154 AEKTDRKLQRE----LSAVRKKMTAAVVLRK---KLQDDL 186

GO:0051225 "spindle assembly" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0070652 "HAUS complex" evidence=IEA

UNIPROTKB|E2RPA4 HAUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 47/187 (25%), Positives = 94/187 (50%)

Query:    22 ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
             A V AWL   F      +P +E  +R+   L++L+ L++ + +   +V  D +QKA+EY 
Sbjct:     9 AQVAAWLKKIF--GDHSIPQYEVNARTTEILHHLSELNRVRDRDVYLVIEDLKQKASEYE 66

Query:    82 SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140
             S+A  ++ +L E+V  +  +L S        L + A  L  +DT L+SF+ A+ D++   
Sbjct:    67 SEAKHLQNLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFIPAVNDLTSDL 126

Query:   141 TAVEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVM 199
                + K  +++ E  K+  + T   +     L+  L + E  ++   A+++N   N+  +
Sbjct:   127 FCTKSKNEEIKLELEKVEKNLTATLVLEKC-LREDLKKAELHLSTERAKVDNRLQNMDFL 185

Query:   200 ASKERQY 206
              +K  ++
Sbjct:   186 KAKSEEF 192

GO:0070652 "HAUS complex" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|619909 Haus1 "HAUS augmin-like complex, subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 47/189 (24%), Positives = 93/189 (49%)

Query:    20 RIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAE 79
             + + V  WL   F      +P +E  +R+   LY+L+  ++ + +  N+V  D RQKA+E
Sbjct:     7 KASQVAEWLKKIF--GDHPIPQYEMNARTTEILYHLSERNRVRDRDVNLVIEDLRQKASE 64

Query:    80 YRSQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISL 138
             Y S+A R+ + L E+V  +  +L +        L + A  L I+DT L+SF+ A+ D++ 
Sbjct:    65 YESEAKRLEDFLMESVNFSPANLSNTGSRFLNALVDSAIALEIKDTSLASFIPAVNDLTS 124

Query:   139 RKTAVEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLA 197
                  + K  +++ E  K+  + T   +     L+  L + +  ++   A+ E    N+ 
Sbjct:   125 DLFRTKSKSEEIKLELGKLEKNLTATLVLEKC-LREDLKKADVHLSAERAKAEGRLQNMD 183

Query:   198 VMASKERQY 206
              + +K  ++
Sbjct:   184 FLKAKAAEF 192

GO:0000922 "spindle pole" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051225 "spindle assembly" evidence=ISO;ISS

GO:0051297 "centrosome organization" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

GO:0070652 "HAUS complex" evidence=ISO;ISS

UNIPROTKB|J9PAB4 HAUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 46/185 (24%), Positives = 93/185 (50%)

Query:    24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
             V AWL   F      +P +E  +R+   L++L+ L++ + +   +V  D +QKA+EY S+
Sbjct:    23 VAAWLKKIF--GDHSIPQYEVNARTTEILHHLSELNRVRDRDVYLVIEDLKQKASEYESE 80

Query:    84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142
             A  ++ +L E+V  +  +L S        L + A  L  +DT L+SF+ A+ D++     
Sbjct:    81 AKHLQNLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFIPAVNDLTSDLFC 140

Query:   143 VEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMAS 201
              + K  +++ E  K+  + T   +     L+  L + E  ++   A+++N   N+  + +
Sbjct:   141 TKSKNEEIKLELEKVEKNLTATLVLEKC-LREDLKKAELHLSTERAKVDNRLQNMDFLKA 199

Query:   202 KERQY 206
             K  ++
Sbjct:   200 KSEEF 204

GO:0070652 "HAUS complex" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

UNIPROTKB|F1RPT0 HAUS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 168 (64.2 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query:    22 ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
             A V AWL   F      +P +E   R+   L++LA  ++ + +   +V  D +QKA EY 
Sbjct:     9 AQVAAWLKKIF--GDHSIPQYEVNPRTTEILHHLAECNRVRDRDVCLVIEDLKQKAREYE 66

Query:    82 SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140
             S+A  ++++L E+V  +  +L S        L + A  L  +DT L+SF+ A+ D++   
Sbjct:    67 SEAKHLQDLLMESVNFSPANLSSAGSKYLNALVDSAVALETKDTSLASFIPAVNDLTSDL 126

Query:   141 TAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMA 200
                + K  ++Q E   L      A+     L+  L + E  ++   A+++N   N+  + 
Sbjct:   127 FRTKSKNEEIQLELGKLEKNLTAALVLEKCLREDLKKAELHLSMERAKVDNRLQNMDFLK 186

Query:   201 SKERQY 206
             +K  ++
Sbjct:   187 AKAEEF 192

GO:0070652 "HAUS complex" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q2TBK4 HAUS1 "HAUS augmin-like complex subunit 1" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 47/187 (25%), Positives = 93/187 (49%)

Query:    22 ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
             A V AWL   F      +P +E  + +   LYNL+  ++ + +   +V  D +QKA EY 
Sbjct:     9 AQVAAWLKKIF--GDHPIPQYEVNAWTTEILYNLSERNRIRDRDVYLVTEDLKQKAKEYE 66

Query:    82 SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140
             S+A  ++++L E+V  +  SL S        L + A +L  +DT L+SF+ A+ D++   
Sbjct:    67 SEAKHLQDLLMESVNFSPASLSSTGSRYLNALVDSAVVLETKDTSLASFIPAVNDLTSDL 126

Query:   141 TAVEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVM 199
                + K  +++ E +K+  + T   +     L+  L + E  +    A++++   N+  +
Sbjct:   127 FRTKSKNEEIKLELAKLEKNLTATLVLEKC-LQEDLKKAELHLCTERARVDSRLQNMDFL 185

Query:   200 ASKERQY 206
              +K  ++
Sbjct:   186 KAKSEEF 192

GO:0003674 "molecular_function" evidence=ND

GO:0070652 "HAUS complex" evidence=ISS

GO:0051297 "centrosome organization" evidence=ISS

GO:0051225 "spindle assembly" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q96CS2 HAUS1 "HAUS augmin-like complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 49/198 (24%), Positives = 100/198 (50%)

Query:    12 PTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAA 71
             P E R+      V AWL   F      +P +E   R+   L++L+  ++ + +   +V  
Sbjct:     3 PQEERET----QVAAWLKKIF--GDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIE 56

Query:    72 DFRQKAAEYRSQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFL 130
             D +QKA+EY S+A  ++++L E+V  +  +L S        L + A  L  +DT L+SF+
Sbjct:    57 DLKQKASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFI 116

Query:   131 VAMGDIS--LRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQ 188
              A+ D++  L +T  + +  K++ E K+  + T   +     L+  + + E  ++   A+
Sbjct:   117 PAVNDLTSDLFRTKSKSEEIKIELE-KLEKNLTATLVLEKC-LQEDVKKAELHLSTERAK 174

Query:   189 MENWKTNLAVMASKERQY 206
             ++N + N+  + +K  ++
Sbjct:   175 VDNRRQNMDFLKAKSEEF 192

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0070652 "HAUS complex" evidence=IDA

GO:0051225 "spindle assembly" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:2385076 Haus1 "HAUS augmin-like complex, subunit 1" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 49/174 (28%), Positives = 88/174 (50%)

Query:    24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
             V  WL   F      +P +E  SR+   LY+L+  ++ + +  ++V  D +QKA+EY S+
Sbjct:    11 VAEWLKKVF--GDHPIPQYEMNSRTTEILYHLSERNRVRDRDISLVIEDLKQKASEYESE 68

Query:    84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDIS---LR 139
             A R+ + L E+V  +  +L  +       L + A  L I+DT L+SF+ A+ D++    R
Sbjct:    69 AKRLEDFLMESVNFSPANLSKSGSRFLNALVDSAIALEIKDTSLASFIPAVNDLTSDLFR 128

Query:   140 -KTAVEEKRAKVQK-ESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN 191
              K+  EE + ++ K E  +      +   R    K  L QL  + A  +++++N
Sbjct:   129 TKSKSEEMKLELGKLEKNLTATLVLEKCLREDLKKAEL-QLSAEKAKVDSRLQN 181

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051225 "spindle assembly" evidence=ISO

GO:0051297 "centrosome organization" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0070652 "HAUS complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.3
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.89
PRK09039	343	hypothetical protein; Validated	91.19
PRK11637	428	AmiB activator; Provisional	90.67
PF14389	88	Lzipper-MIP1: Leucine-zipper of ternary complex fa	90.44
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	89.62
PF04518	379	Effector_1: Effector from type III secretion syste	87.62
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	86.86
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	86.35
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	86.11
PRK10884	206	SH3 domain-containing protein; Provisional	84.69
PF00038	312	Filament: Intermediate filament protein; InterPro:	84.13
KOG0964	1200	consensus Structural maintenance of chromosome pro	84.03
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	83.64
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.82
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	82.7
PRK09039	343	hypothetical protein; Validated	82.53
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	81.62
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	80.34
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	80.34
COG4942	420	Membrane-bound metallopeptidase [Cell division and	80.08

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.30  E-value=2.5  Score=34.56  Aligned_cols=121  Identities=16%  Similarity=0.197  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314           84 AARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRK  163 (225)
Q Consensus        84 a~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k  163 (225)
                      ..++..-|.+.|+....+..++.             +....+...++..|.+|=...-.--..+..+...+..+..-...
T Consensus         4 ~~yiN~~L~s~G~~~~~~~~~~~-------------~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~   70 (151)
T PF11559_consen    4 IEYINQQLLSRGYPSDGLLFDSA-------------EESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIER   70 (151)
T ss_pred             HHHHHHHHHHCCCCCCCccCccc-------------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            35677778888888777666555             22222333333333333322222222222222222222211111


Q ss_pred             HHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314          164 AIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI  217 (225)
Q Consensus       164 ~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~  217 (225)
                      --.....|++.+++++...+....+...-....+.+..+.....+.+..++..+
T Consensus        71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~  124 (151)
T PF11559_consen   71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL  124 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111122245555555555555555555555556666666666666555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.89  E-value=3.6  Score=35.90  Aligned_cols=84  Identities=17%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHH
Q 027314          128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL  207 (225)
Q Consensus       128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~  207 (225)
                      .=.+-|..|.++++++..+..++..|...|..-    ..+   -.+.|.++++.-+++|.-+..+.-.+.+|+.+.+.++
T Consensus         9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l----q~R---q~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q   81 (194)
T PF15619_consen    9 ARLHKIKELQNELAELQRKLQELRKENKTLKQL----QKR---QEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQ   81 (194)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999999888332    222   2556888998889999999999999999999999999


Q ss_pred             HHHHhHHHHhh
Q 027314          208 QQYNNYKVSIF  218 (225)
Q Consensus       208 ~r~~~~~~~~~  218 (225)
                      +++...+..+.
T Consensus        82 ~~~r~~~~klk   92 (194)
T PF15619_consen   82 EQERELERKLK   92 (194)
T ss_pred             HHHHHHHHHHH
Confidence            99988887765

>PRK09039 hypothetical protein; Validated

Probab=91.19  E-value=3.3  Score=38.84  Aligned_cols=72  Identities=17%  Similarity=0.233  Sum_probs=37.6

Q ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHH
Q 027314          128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY  206 (225)
Q Consensus       128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey  206 (225)
                      ..-..+..+..++.+.+....+.+.++..|    +.+|+.   ||++|..++......+.+..+-+..+.-|+.++..-
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L----~~qI~a---Lr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELL----NQQIAA---LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555    445555   466666666555555555555444444444444444

>PRK11637 AmiB activator; Provisional

Probab=90.67  E-value=4.6  Score=38.40  Aligned_cols=83  Identities=10%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314          135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK  214 (225)
Q Consensus       135 dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~  214 (225)
                      ++..++.+++++....+.+++.+++.+......+..+.+.|..++........+...-.+.++-+..++.+.+.++...+
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666666666666655555555555555556666666655555555566656666666666666666655544


Q ss_pred             HHh
Q 027314          215 VSI  217 (225)
Q Consensus       215 ~~~  217 (225)
                      ..|
T Consensus       124 ~~l  126 (428)
T PRK11637        124 RLL  126 (428)
T ss_pred             HHH
Confidence            433

>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1

Probab=90.44  E-value=4.2  Score=31.18  Aligned_cols=77  Identities=13%  Similarity=0.187  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314          143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE----DDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF  218 (225)
Q Consensus       143 ~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le----~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~  218 (225)
                      ..+.+..++.++..|++.|+++...-..|...|.---    ..|..+|.++.+-..++.++..=+--..+++.++...||
T Consensus         6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~   85 (88)
T PF14389_consen    6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF   85 (88)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788889999999999999988544544443321    125788999999999999999988888888888888776


Q ss_pred             h
Q 027314          219 C  219 (225)
Q Consensus       219 ~  219 (225)
                      .
T Consensus        86 ~   86 (88)
T PF14389_consen   86 Q   86 (88)
T ss_pred             h
Confidence            4

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=89.62  E-value=13  Score=34.32  Aligned_cols=160  Identities=16%  Similarity=0.187  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHhcccc-ccC-CC--hhHHHHHHHHHHHHHHhCCCC------CChhhH
Q 027314           63 TKAANIVAADFRQKAAEYR---SQAARIREILENVGLA-QES-LP--SNVVSSAQVLANVANLLNIRD------TELSSF  129 (225)
Q Consensus        63 Dee~~Ll~~d~~qk~~Ey~---aea~~l~elLe~vgls-~~s-Ls--~~G~~aL~aLa~~A~~L~~~d------ts~~sl  129 (225)
                      |+|...++.+-.-....|+   +....++.|++-.|=- ..+ |.  .-=+.||++|+++-..|.-..      .++...
T Consensus        75 ~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~  154 (269)
T PF05278_consen   75 DEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEM  154 (269)
T ss_pred             chhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHH
Confidence            4455555554444455565   4567788888755411 111 11  123568999999998885322      244455


Q ss_pred             HHHHHHhhhhH----------HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHH
Q 027314          130 LVAMGDISLRK----------TAVEEKRA------KVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWK  193 (225)
Q Consensus       130 ~~ai~dLt~~~----------~~~e~~~~------r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~  193 (225)
                      ...+.||.+--          .++-+...      .+..+.+.....+...-..++.+.+.|++.+.++.++..++.++.
T Consensus       155 ~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~  234 (269)
T PF05278_consen  155 IATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMK  234 (269)
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677776322          22222211      122222233333333333334456677777777788888888888


Q ss_pred             HhHHHHHhhHHHHHHHHHhHHHHhhhhhc
Q 027314          194 TNLAVMASKERQYLQQYNNYKVSIFCYHY  222 (225)
Q Consensus       194 r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~  222 (225)
                      -.+.-|.-|......++..++++..+||-
T Consensus       235 ~rl~~l~~~~~~l~k~~~~~~sKV~kf~~  263 (269)
T PF05278_consen  235 GRLGELEMESTRLSKTIKSIKSKVEKFHG  263 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88888888888888888889989888874

>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins

Probab=87.62  E-value=16  Score=35.34  Aligned_cols=133  Identities=14%  Similarity=0.138  Sum_probs=81.7

Q ss_pred             HHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHH
Q 027314           88 REILENVGLAQESLPSNVVSSAQVLANVANLLNIRDT--ELSSFLVAMGDISLRKT--AVEEKRAKVQKESKILLDYTRK  163 (225)
Q Consensus        88 ~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dt--s~~sl~~ai~dLt~~~~--~~e~~~~r~~~e~~~L~~~l~k  163 (225)
                      ++.|+.+| .+=.+|--|..++|.|-+........++  +++||+.- ...-...|  ..+....++++|.+-+..+++.
T Consensus       141 ~~~L~~L~-~elnfsN~aa~~~N~ll~~i~~F~~a~vYynl~sYl~Q-~~~g~~~F~g~~~~a~~~l~~E~~~~~~di~~  218 (379)
T PF04518_consen  141 EDFLNPLG-SELNFSNLAANYGNPLLEIINSFNNASVYYNLSSYLGQ-SKMGTDNFPGSYFMALAKLEKEREQIRRDIKS  218 (379)
T ss_pred             HHHHHHHH-HHhhcchHHHHHHHHHHHHHHcCcCcceeeehHHHHhh-hccchhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            34577665 4556777899999999999999999887  78887765 11111111  2344455555566555555554


Q ss_pred             HHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhhc
Q 027314          164 AIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHY  222 (225)
Q Consensus       164 ~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~  222 (225)
                      .-.....+.+.++..+.++.-..+|-.+....+.-...=+.-...++..+...|+--++
T Consensus       219 ~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~~L~~  277 (379)
T PF04518_consen  219 CERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLAPLSI  277 (379)
T ss_pred             HHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence            44444447888888888865555555554444444444444445555666666665554

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.86  E-value=2  Score=40.99  Aligned_cols=70  Identities=20%  Similarity=0.176  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314          143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN  212 (225)
Q Consensus       143 ~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~  212 (225)
                      .+.-+.|++.|++.++.-...=-.+.+.|+.-..+|+-....++.++...+.|+.+|++|.+|-+.+..+
T Consensus       216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n  285 (365)
T KOG2391|consen  216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN  285 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence            3455566666666664433333334444566666666666888899999999999999999996655544

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=86.35  E-value=13  Score=30.67  Aligned_cols=80  Identities=13%  Similarity=0.080  Sum_probs=42.2

Q ss_pred             hHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhH
Q 027314          128 SFLVAMGDISLRKTAVEEKRAK----VQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKE  203 (225)
Q Consensus       128 sl~~ai~dLt~~~~~~e~~~~r----~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~  203 (225)
                      ++..|+..++..+-.+-+..+.    +..+++.|-.+++...+.....++++.+++.+              +...+.++
T Consensus        40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~d--------------v~~i~~dv  105 (126)
T PF07889_consen   40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRED--------------VSQIGDDV  105 (126)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHH
Confidence            3455666666666655544433    33455555555555544444445555555544              44555555


Q ss_pred             HHHHHHHHhHHHHhhhhh
Q 027314          204 RQYLQQYNNYKVSIFCYH  221 (225)
Q Consensus       204 ~Ey~~r~~~~~~~~~~~~  221 (225)
                      ...+..+..++.+|++..
T Consensus       106 ~~v~~~V~~Le~ki~~ie  123 (126)
T PF07889_consen  106 DSVQQMVEGLEGKIDEIE  123 (126)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            555555555555555443

The region featured in this family is approximately 100 amino acids long.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.11  E-value=14  Score=32.74  Aligned_cols=51  Identities=12%  Similarity=0.104  Sum_probs=27.0

Q ss_pred             HHHHHHhhhcCcCchHHHHHHHHHhHHHHHh-----hHHHHHHHHHhHHHHhhhhh
Q 027314          171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMAS-----KERQYLQQYNNYKVSIFCYH  221 (225)
Q Consensus       171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~-----K~~Ey~~r~~~~~~~~~~~~  221 (225)
                      |++++++++.--..+...|..+...++-.-.     +..|...|+..++.++.++.
T Consensus        89 L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~d  144 (251)
T PF11932_consen   89 LEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDAD  144 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccC
Confidence            4555554443333333444444333333222     55677778888888877654

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.69  E-value=8  Score=34.08  Aligned_cols=72  Identities=11%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314          133 MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN  212 (225)
Q Consensus       133 i~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~  212 (225)
                      +-.+..++.+++.+...++.+++....          .++..+++.+....++..+..+-.+.+..++.|.+....++..
T Consensus        95 lp~le~el~~l~~~l~~~~~~~~~~~~----------~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~  164 (206)
T PRK10884         95 VPDLENQVKTLTDKLNNIDNTWNQRTA----------EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD  164 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555444444332222          2344455555444556666777777777788888877777777


Q ss_pred             HH
Q 027314          213 YK  214 (225)
Q Consensus       213 ~~  214 (225)
                      .+
T Consensus       165 ~~  166 (206)
T PRK10884        165 KQ  166 (206)
T ss_pred             HH
Confidence            76

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=84.13  E-value=16  Score=32.76  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314          145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE  179 (225)
Q Consensus       145 ~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le  179 (225)
                      +...++...+..|..-+..-......|.+.+.+++
T Consensus       216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le  250 (312)
T PF00038_consen  216 EELKELRRQIQSLQAELESLRAKNASLERQLRELE  250 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence            33344444444444444444444444555555555

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.03  E-value=24  Score=38.20  Aligned_cols=84  Identities=14%  Similarity=0.088  Sum_probs=57.2

Q ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCch------HHHHHHHHHhHHHHHh
Q 027314          128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPC------EAQMENWKTNLAVMAS  201 (225)
Q Consensus       128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l------~~q~~ew~r~~k~L~~  201 (225)
                      +....+...++++...+.+....-.+++.|+++.++..+..+.++..|+++++-.-++      ...++.-++...+|-.
T Consensus       844 ~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~  923 (1200)
T KOG0964|consen  844 SRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLK  923 (1200)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence            3344444455555555555555555899999999999999888888887777542211      2445566666778888


Q ss_pred             hHHHHHHHHH
Q 027314          202 KERQYLQQYN  211 (225)
Q Consensus       202 K~~Ey~~r~~  211 (225)
                      |-+||.++|-
T Consensus       924 KreE~~ekIr  933 (1200)
T KOG0964|consen  924 KREECCEKIR  933 (1200)
T ss_pred             HHHHHHHHHH
Confidence            9889999983

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=83.64  E-value=66  Score=34.84  Aligned_cols=90  Identities=13%  Similarity=0.181  Sum_probs=43.6

Q ss_pred             ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcCcCchHHHHHHHHHhHH
Q 027314          125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIAR-------LTYLKRTLGQLEDDVAPCEAQMENWKTNLA  197 (225)
Q Consensus       125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~-------~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k  197 (225)
                      ....+...+..+..+.-+++.+...+..+++.+...++.....       ...+...|..++....++..+..++.....
T Consensus       822 ~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~  901 (1163)
T COG1196         822 RRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA  901 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555544444444444333333333333       333344444444445555556666655555


Q ss_pred             HHHhhHHHHHHHHHhHH
Q 027314          198 VMASKERQYLQQYNNYK  214 (225)
Q Consensus       198 ~L~~K~~Ey~~r~~~~~  214 (225)
                      -+..+...+..++..+.
T Consensus       902 ~~~~~~~~~~~~~~~l~  918 (1163)
T COG1196         902 ELKEEIEKLRERLEELE  918 (1163)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555555443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=82.82  E-value=40  Score=31.18  Aligned_cols=48  Identities=8%  Similarity=0.172  Sum_probs=35.8

Q ss_pred             HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314          171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF  218 (225)
Q Consensus       171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~  218 (225)
                      ++..++..+.....++.+...+...+.-+..+..++..+|+..++.+.
T Consensus       221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555667788888888888888888888888888887764

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=82.70  E-value=55  Score=35.38  Aligned_cols=92  Identities=13%  Similarity=0.162  Sum_probs=43.0

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHH
Q 027314          129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQ  208 (225)
Q Consensus       129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~  208 (225)
                      +-..+..++..+.++..+..+.+.+...+.+.+...-.....+.++|.+++.+...+..+...+......+..|...+..
T Consensus       847 l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  926 (1163)
T COG1196         847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEV  926 (1163)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444443333333333345555555555555555555555555555555555555


Q ss_pred             HHHhHHHHhhhh
Q 027314          209 QYNNYKVSIFCY  220 (225)
Q Consensus       209 r~~~~~~~~~~~  220 (225)
                      ++.+....++.+
T Consensus       927 ~~~~~~~~~~~~  938 (1163)
T COG1196         927 ELPELEEELEEE  938 (1163)
T ss_pred             HHHHHHhhhccc
Confidence            555554444443

>PRK09039 hypothetical protein; Validated

Probab=82.53  E-value=43  Score=31.42  Aligned_cols=61  Identities=15%  Similarity=0.175  Sum_probs=31.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHH
Q 027314          131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAV  198 (225)
Q Consensus       131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~  198 (225)
                      .++........+.--+..+++.+++.|    ++.++.   |...|...+..-.+...+..+-.+.+..
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aL----r~Qla~---le~~L~~ae~~~~~~~~~i~~L~~~L~~  183 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAAL----RRQLAA---LEAALDASEKRDRESQAKIADLGRRLNV  183 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555556666666    333444   3555555554444444555554444433

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=81.62  E-value=11  Score=27.24  Aligned_cols=43  Identities=21%  Similarity=0.189  Sum_probs=31.5

Q ss_pred             HHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314          170 YLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF  218 (225)
Q Consensus       170 ~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~  218 (225)
                      ...+.|.+++.++...|.      .....+..|++.|+..+.+++.-|.
T Consensus        36 ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~   78 (79)
T PF05008_consen   36 EAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK   78 (79)
T ss_dssp             HHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            357777777777655544      2346789999999999999987664

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=80.34  E-value=30  Score=28.87  Aligned_cols=71  Identities=14%  Similarity=0.227  Sum_probs=45.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHH
Q 027314          137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL  207 (225)
Q Consensus       137 t~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~  207 (225)
                      ..+..+.+++..+++.++..+..+.......+..+++....+.......+.....|....+-+....++.+
T Consensus        80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666777777777776666666666666666665555555666666666666666555555

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=80.34  E-value=95  Score=33.94  Aligned_cols=94  Identities=14%  Similarity=0.254  Sum_probs=49.9

Q ss_pred             CCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-CchHHHHHHHHHhHHHH
Q 027314          121 IRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV-APCEAQMENWKTNLAVM  199 (225)
Q Consensus       121 ~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~-a~l~~q~~ew~r~~k~L  199 (225)
                      ..|.....+-..+-++-++..+++.+..+.+..+..+.+    +.-.   ++++++.++.+. ..+.++-.+...+.+.|
T Consensus       334 ~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~----~~d~---l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L  406 (1074)
T KOG0250|consen  334 AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK----EVDR---LEKQIADLEKQTNNELGSELEERENKLEQL  406 (1074)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            445556666666666666666666555555555544422    2112   344444444332 33445555555566666


Q ss_pred             HhhHHHHHHHHHhHHHHhhhhh
Q 027314          200 ASKERQYLQQYNNYKVSIFCYH  221 (225)
Q Consensus       200 ~~K~~Ey~~r~~~~~~~~~~~~  221 (225)
                      +.-++..+.++++|...++++|
T Consensus       407 ~~evek~e~~~~~L~~e~~~~~  428 (1074)
T KOG0250|consen  407 KKEVEKLEEQINSLREELNEVK  428 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666665554

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=80.08  E-value=15  Score=36.03  Aligned_cols=82  Identities=20%  Similarity=0.214  Sum_probs=48.4

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314          135 DISLRKTAVEEKRAKVQKESKILLDYT---RKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYN  211 (225)
Q Consensus       135 dLt~~~~~~e~~~~r~~~e~~~L~~~l---~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~  211 (225)
                      ....++...+......+.+...|++.+   +++|+.   +..+|.+.+.+...+..+.++-..++.-|....++=+++++
T Consensus        42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~---~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La  118 (420)
T COG4942          42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS---LEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA  118 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443333   444444   57777777766677777777777777777777777677666


Q ss_pred             hHHHHhhh
Q 027314          212 NYKVSIFC  219 (225)
Q Consensus       212 ~~~~~~~~  219 (225)
                      .+=+-++|
T Consensus       119 ~~L~A~~r  126 (420)
T COG4942         119 EQLAALQR  126 (420)
T ss_pred             HHHHHHHh
Confidence            65555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 44/219 (20%), Positives = 66/219 (30%), Gaps = 62/219 (28%)

Query: 25  KAWLASQFEASAKEVPAFEY---------TSRSVAHLYNLATLSQAKTKAANIVAADFRQ 75
           K W+A     S K     ++          +     L  L  L        N  +     
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHS 220

Query: 76  KAAEYRSQAA--RIREILENVGLAQESLPSNVVSSAQVLANVAN-------------LLN 120
              + R  +    +R +     L  +   + ++    VL NV N             LL 
Sbjct: 221 SNIKLRIHSIQAELRRL-----LKSKPYENCLL----VLLNVQNAKAWNAFNLSCKILLT 271

Query: 121 IRDTELSSFLVA--MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQL 178
            R  +++ FL A     ISL              E K LL         L YL      L
Sbjct: 272 TRFKQVTDFLSAATTTHISL----DHHSMTLTPDEVKSLL---------LKYLDCRPQDL 318

Query: 179 EDDVAPCEAQMENWKTN---LAVMASKERQYLQQYNNYK 214
                P E       TN   L+++A   R  L  ++N+K
Sbjct: 319 -----PREVL----TTNPRRLSIIAESIRDGLATWDNWK 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	89.67
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	85.09
2ic6_A	78	Nucleocapsid protein; hantavirus, bunyaviridae, ss	84.71
4fi5_A	113	Nucleoprotein; structural genomics, niaid, nationa	83.87
2ic9_A	96	Nucleocapsid protein; hantavirus, bunyaviridae, ss	83.23
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	82.34
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	81.83
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	81.34
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.15

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=89.67  E-value=3.5  Score=32.13  Aligned_cols=67  Identities=12%  Similarity=0.076  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHH-HHHhHHHHHhhHHHHHHHHHhHH
Q 027314          145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN-WKTNLAVMASKERQYLQQYNNYK  214 (225)
Q Consensus       145 ~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~e-w~r~~k~L~~K~~Ey~~r~~~~~  214 (225)
                      ....+++.++......|..+..+   |++.-+.++.+|.+...++.. ++--+..+.+|+.|++.+++..-
T Consensus        35 ~~ieeLQ~Ei~~~E~QL~iArQK---LkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v  102 (107)
T 2k48_A           35 STLQELQENITAHEQQLVTARQK---LKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV  102 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666777777777778778   688889999998888766554 44557889999999999987643

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.09  E-value=12  Score=29.15  Aligned_cols=96  Identities=15%  Similarity=0.239  Sum_probs=56.8

Q ss_pred             hCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhH-H
Q 027314          119 LNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL-A  197 (225)
Q Consensus       119 L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~-k  197 (225)
                      ++..-+++..+-..|..|+.++..+..++.-++..+..+......++..   ++..|..|+.+.......|....+.- .
T Consensus        33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~em~~ql~EYq~  109 (131)
T 3tnu_A           33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ---IQEMIGSVEEQLAQLRCEMEQQNQEYKI  109 (131)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444566777888888888888888888777777777776666666655   46666666655544444454443332 4


Q ss_pred             HHHhhHHHHHHHHHhHHHHhh
Q 027314          198 VMASKERQYLQQYNNYKVSIF  218 (225)
Q Consensus       198 ~L~~K~~Ey~~r~~~~~~~~~  218 (225)
                      .|..|.. ..-.|++|.++|.
T Consensus       110 Ll~vKl~-Ld~EIatYRkLLE  129 (131)
T 3tnu_A          110 LLDVKTR-LEQEIATYRRLLE  129 (131)
T ss_dssp             HHHHHHH-HHHHHHHHHHHTT
T ss_pred             HHHHHHH-HHHHHHHHHHhHC
Confidence            5666653 3445677776663

>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}

Probab=84.71  E-value=9.6  Score=28.10  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHH-HHHhHHHHHhhHHHHHHHHHhH
Q 027314          146 KRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN-WKTNLAVMASKERQYLQQYNNY  213 (225)
Q Consensus       146 ~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~e-w~r~~k~L~~K~~Ey~~r~~~~  213 (225)
                      ...+++.++......|..+..+   |++.-..++.+|.+...++-. ++--+..+..|+.|++.+++..
T Consensus         6 ~l~eLq~e~~~~E~QL~~A~QK---LkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~   71 (78)
T 2ic6_A            6 TLKEVQDNITLHEQRLVTTRQK---LKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL   71 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666777777777888888   688889999998888766554 4445788999999999888754

>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}

Probab=83.87  E-value=8.3  Score=30.27  Aligned_cols=64  Identities=13%  Similarity=0.044  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHH-HHHhHHHHHhhHHHHHHHHHhHH
Q 027314          148 AKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN-WKTNLAVMASKERQYLQQYNNYK  214 (225)
Q Consensus       148 ~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~e-w~r~~k~L~~K~~Ey~~r~~~~~  214 (225)
                      .+++.++......|..+..+   |++.-..++-+|.+...++.. ++--+..+..|+.|++.+++..-
T Consensus        25 eeLq~Ei~~~E~QL~~ArQK---LkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v   89 (113)
T 4fi5_A           25 EELQREINAHEGQLVIARQK---VRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI   89 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666777777   588888899998888766554 44457889999999999987653

>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}

Probab=83.23  E-value=10  Score=29.05  Aligned_cols=65  Identities=11%  Similarity=0.077  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHH-HHHhHHHHHhhHHHHHHHHHhHH
Q 027314          147 RAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN-WKTNLAVMASKERQYLQQYNNYK  214 (225)
Q Consensus       147 ~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~e-w~r~~k~L~~K~~Ey~~r~~~~~  214 (225)
                      ..+++.++......|..+..+   |+..-..++.+|.+...++.. ++--+..|..|+.|++.+++..-
T Consensus         7 i~eLq~e~~~~E~QL~~A~QK---LkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v   72 (96)
T 2ic9_A            7 LKEVQDNITLHEQRLVTTRQK---LKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI   72 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777778778   688889999998888766554 44457889999999999987643

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.34  E-value=11  Score=29.11  Aligned_cols=90  Identities=14%  Similarity=0.171  Sum_probs=52.9

Q ss_pred             CChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhH-HHHHhh
Q 027314          124 TELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL-AVMASK  202 (225)
Q Consensus       124 ts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~-k~L~~K  202 (225)
                      +++..+-+.|..|+.++..+..++.-++..+.........++..   ++..|..|+.+.......|....+.- ..|..|
T Consensus        36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK  112 (129)
T 3tnu_B           36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD---ARNKLAELEEALQKAKQDMARLLREYQELMNTK  112 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777788777777777777777766666655555554   35555555555444444444433332 355556


Q ss_pred             HHHHHHHHHhHHHHh
Q 027314          203 ERQYLQQYNNYKVSI  217 (225)
Q Consensus       203 ~~Ey~~r~~~~~~~~  217 (225)
                      .. ..--|++|.++|
T Consensus       113 l~-Ld~EIatYRkLL  126 (129)
T 3tnu_B          113 LA-LDVEIATYRKLL  126 (129)
T ss_dssp             HH-HHHHHHHHHHTT
T ss_pred             HH-HHHHHHHHHHhH
Confidence            43 234466666665

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=81.83  E-value=15  Score=34.83  Aligned_cols=27  Identities=11%  Similarity=0.117  Sum_probs=21.5

Q ss_pred             HHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314          192 WKTNLAVMASKERQYLQQYNNYKVSIF  218 (225)
Q Consensus       192 w~r~~k~L~~K~~Ey~~r~~~~~~~~~  218 (225)
                      ...++..|..++.++..+|.+++..+.
T Consensus       166 ~~~~i~~L~~~~~~l~~ki~~l~~~~~  192 (464)
T 1m1j_B          166 IPSSLRVLRAVIDSLHKKIQKLENAIA  192 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888888888887664

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=81.34  E-value=24  Score=30.00  Aligned_cols=98  Identities=15%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             CChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhH
Q 027314          124 TELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKE  203 (225)
Q Consensus       124 ts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~  203 (225)
                      -+...+...|-.+..+...+++...++..+++.+...+...-..+..++..|...+   +.+...+.+-......+..+.
T Consensus        90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~---~~~~~~~~e~~~e~~~l~~~r  166 (256)
T 3na7_A           90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE---SLVENEVKNIKETQQIIFKKK  166 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            36777888888888888888888888777787776666666666655666666666   445555555556666666666


Q ss_pred             HHHHHHH-----HhHHHHhhhhhccC
Q 027314          204 RQYLQQY-----NNYKVSIFCYHYVG  224 (225)
Q Consensus       204 ~Ey~~r~-----~~~~~~~~~~~~~~  224 (225)
                      .++...+     +.|+++-.+++-+|
T Consensus       167 ~~l~~~i~~~lL~~Yerir~~~~g~a  192 (256)
T 3na7_A          167 EDLVEKTEPKIYSFYERIRRWAKNTS  192 (256)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHGGGS
T ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCce
Confidence            6666553     66776665555554

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.15  E-value=5.5  Score=38.74  Aligned_cols=90  Identities=9%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcCcCchHHHHHHHHHhHHHHHhhH
Q 027314          128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLG----QLEDDVAPCEAQMENWKTNLAVMASKE  203 (225)
Q Consensus       128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~----~Le~~~a~l~~q~~ew~r~~k~L~~K~  203 (225)
                      +|-..|++|..+++++++.+..++.-.+.+-+++++.+...........    +|+.+...++.++.+...+++.|.+=+
T Consensus        61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL  140 (562)
T 3ghg_A           61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV  140 (562)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999888888888888888888777666422222111    444445666677778888888888888


Q ss_pred             HHHHHHHHhHHHHh
Q 027314          204 RQYLQQYNNYKVSI  217 (225)
Q Consensus       204 ~Ey~~r~~~~~~~~  217 (225)
                      ++-+.+|..|+.-|
T Consensus       141 edq~~kIQRLEvDI  154 (562)
T 3ghg_A          141 RAQLVDMKRLEVDI  154 (562)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888887777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00