Citrus Sinensis ID: 027328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLSFIGGAASNAAATAAPAVSARV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccEEEEccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccccEEEEcccccccccccccHHHccc
Coil and Loop (DISEMBL)
mtsasppvlpisnsqptttassassvqsqppvatPAFRALINHISDslrygfaqrrpwaeladrsafskpesfseATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYlfrpsdqplvvfgrTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICahgafrvpedlfldeqepsastgFLSFIGGaasnaaataapavsarv
Flexible Loop (DISEMBL)
mtsasppvlpisnsqptTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAEladrsafskpesfseatlrIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLSFIGGAASNAAataapavsarv
Low Complexity Region (SEG)
MTSASPPVLPISNsqptttassassvqsqppvaTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLSFIGGaasnaaataapavsaRV
Disordered region (IsUnstruct)
***********************************AFRALINHISDSLRYGFAQRRPWAELAD**********SEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLD*******TGFLSFIG******************
Disordered Region (DISOPRED)
******P********************************LIN**********AQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLS*********************
Disordered Region (DISEMBL)
*******************************VATPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLSFIGGAAS**************
Disordered Region (DISPRO)
*******************************VATPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGF***********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLSFIGGAASNAAATAAPAVSARV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
O80915	220	PRA1 family protein B4 OS	yes	no	0.915	0.936	0.697	6e-84
Q9M012	223	PRA1 family protein B5 OS	no	no	0.897	0.905	0.585	4e-65
Q9LYN0	209	PRA1 family protein B1 OS	no	no	0.857	0.923	0.591	1e-62
Q9FLB6	217	PRA1 family protein B3 OS	no	no	0.866	0.898	0.620	2e-61
Q9SIY7	213	PRA1 family protein B2 OS	no	no	0.875	0.924	0.567	3e-56
Q9LYQ4	216	PRA1 family protein B6 OS	no	no	0.662	0.689	0.610	6e-46
Q9LIC7	188	PRA1 family protein F4 OS	no	no	0.813	0.973	0.350	4e-24
Q9C889	189	PRA1 family protein F2 OS	no	no	0.724	0.862	0.359	1e-23
Q9FRR1	209	PRA1 family protein E OS=	no	no	0.617	0.665	0.345	2e-20
Q9LIC6	188	PRA1 family protein F3 OS	no	no	0.688	0.824	0.388	3e-20

>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1

 Score =  310 bits (793), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 145/208 (69%), Positives = 180/208 (86%), Gaps = 2/208 (0%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M S++PPVLPISN Q T  +++ SSV+SQPP+ATPAFR  IN I+++++ G ++RRPWAE
Sbjct: 1   MASSAPPVLPISNPQ-TVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAE 59

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           LADRSA SKPES S+A +RIRKNYSYF+VNYLTV   ++ FSL+T+PFSL+ L+ LLASW
Sbjct: 60  LADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASW 119

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
           +FLYLFRP+DQP+V+FGRTFS+RETLG LI+ SIFV FLT VGS+L+SA+M+G  LICAH
Sbjct: 120 LFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAH 179

Query: 181 GAFRVPEDLFLDEQEPSASTGFLSFIGG 208
           GAFR PEDLFLDEQEP A+TGFLSF+GG
Sbjct: 180 GAFRAPEDLFLDEQEP-AATGFLSFLGG 206

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1

 Score =  247 bits (631), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 123/210 (58%), Positives = 161/210 (76%), Gaps = 8/210 (3%)

Query: 1   MTSASPPVLPISNSQPTTTASS---ASSVQSQPPVATPAFRALINHISDSLRYGFAQRRP 57
           M S +PPVLPIS +   TT       + V+SQPPV     RA +N +++++  G ++ RP
Sbjct: 1   MVSTNPPVLPISTTATDTTNQPPIVTAVVESQPPVV----RAFVNGVTETVCGGLSRSRP 56

Query: 58  WAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLL 117
           W+EL DRSAF+KP+S SEA  R RKN SYFRVNY+ +VA+++ FSL+ +PFSL++L+ L 
Sbjct: 57  WSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLA 116

Query: 118 ASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLI 177
           ASW+FLYLFRPSD+PL++FGR+FSE ETLG LI+ +I V F TSVGS+LISA+M+G   I
Sbjct: 117 ASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATI 176

Query: 178 CAHGAFRVPEDLFLDEQEPSASTGFLSFIG 207
           C HGAFR P+DLFLDEQ+ +AS GFLSFIG
Sbjct: 177 CVHGAFRAPDDLFLDEQDHAAS-GFLSFIG 205

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 159/203 (78%), Gaps = 10/203 (4%)

Query: 4   ASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAELAD 63
           A+PP LP++N Q         +VQSQPP+ TPAFR   + +S S+R G +QRRPW EL D
Sbjct: 2   ATPPTLPVTNQQ---------AVQSQPPINTPAFRTFFSRLSTSIRDGLSQRRPWTELID 52

Query: 64  RSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFL 123
           RS+ ++PES ++A  RIRKN +YF+VNY+ +V++V+AFSL ++P SLL+L+GLL  W+FL
Sbjct: 53  RSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFL 112

Query: 124 YLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAF 183
           YLFRPSDQPLVVFGRTFS+RETL  L++ +I V F+TSVGS+L SA+M+G  ++C HGAF
Sbjct: 113 YLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAF 172

Query: 184 RVPEDLFLDEQEPSASTGFLSFI 206
            VP+DLFLDEQEP A+ G LSF+
Sbjct: 173 VVPDDLFLDEQEP-ANAGLLSFL 194

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB6|PR1B3_ARATH PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/203 (62%), Positives = 162/203 (79%), Gaps = 8/203 (3%)

Query: 4   ASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAELAD 63
           A+PP LPIS+        S    QSQ PV+TPAFR  ++ +S S+R   +QRRPW EL D
Sbjct: 3   ANPPTLPISDH-------SGGGSQSQQPVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVD 55

Query: 64  RSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFL 123
           RSA S+PES ++A  RIR+N  YF+VNY+T+V++V+A SL+++PFSLL+L+ L  +WIFL
Sbjct: 56  RSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFL 115

Query: 124 YLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAF 183
           YLFRPSDQPLVV GRTFS+RETLGVL++L+I V FLTSVGS+L SA+M+G G++C HGAF
Sbjct: 116 YLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAF 175

Query: 184 RVPEDLFLDEQEPSASTGFLSFI 206
           RVPEDLFLD+QEP A+TG LSF+
Sbjct: 176 RVPEDLFLDDQEP-ANTGLLSFL 197

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIY7|PR1B2_ARATH PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1

 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/206 (56%), Positives = 160/206 (77%), Gaps = 9/206 (4%)

Query: 3   SASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAELA 62
           S+SP +LP++N Q  T        QSQPP+ + AFR  ++ +S SLR   +QRRPW EL 
Sbjct: 2   SSSPAILPVTNQQAAT--------QSQPPINSHAFRTFLSRLSSSLRESLSQRRPWLELV 53

Query: 63  DRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIF 122
           DRS+F++P+S +++  RIRKN +YF+VNY  +V++V+AFSL+++PFSLL+L+ LL SW+F
Sbjct: 54  DRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMF 113

Query: 123 LYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGA 182
           LYLFR SDQPLV+FGR+FS+RETL  L++ +I V F+TSVGS+L SA+ +G  ++C HGA
Sbjct: 114 LYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGA 173

Query: 183 FRVPEDLFLDEQEPSASTGFLSFIGG 208
           FRVP+DLFLDEQEP A+ G LSFIG 
Sbjct: 174 FRVPDDLFLDEQEP-ANAGLLSFIGN 198

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYQ4|PR1B6_ARATH PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1

 Score =  184 bits (466), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/149 (61%), Positives = 120/149 (80%)

Query: 47  SLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITN 106
           ++R+  A  RPWAEL DRSAFS+P S SEAT R+RKN+SYFR NY+T+VA+++A SL+T+
Sbjct: 36  TVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTH 95

Query: 107 PFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSIL 166
           PF+L +L  L ASW+FLY FRP+DQPLV+ GRTFS+ ETLG+L + ++ V F+TSVGS+L
Sbjct: 96  PFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLL 155

Query: 167 ISAVMVGAGLICAHGAFRVPEDLFLDEQE 195
           +S + VG   +  HGAFR PEDLFL+EQE
Sbjct: 156 MSTLAVGIMGVAIHGAFRAPEDLFLEEQE 184

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 11/194 (5%)

Query: 11  ISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKP 70
           ++N+   TT+S AS   +   ++    R         ++ G A RR W  + D  +   P
Sbjct: 1   MANNDEITTSSHASPAVNHESISRAKQR---------IKDGLATRRSWRVMFDLHSTGLP 51

Query: 71  ESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSD 130
              S+   RI+ N +YFR NY  V+  VI FSLI +P SL++  GL+  WIFLY  R  D
Sbjct: 52  HGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLR--D 109

Query: 131 QPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLF 190
            PL VF     +R  L  L V++I +  LT+    +++A+M GA L+  H   R  +DLF
Sbjct: 110 VPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLF 169

Query: 191 LDEQEPSASTGFLS 204
           LDE+  +  T  L+
Sbjct: 170 LDEEAATTETSGLT 183

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 4/167 (2%)

Query: 41  INHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIA 100
           I+     ++ G A RRPW  + D  + + P  F +A  RI+ N  YFR NY   V  ++ 
Sbjct: 22  ISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILF 81

Query: 101 FSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLT 160
            SL+ +P SL++L  L+  WIFLY  R  D+PLVVFG    +R  L  L VL++ +  LT
Sbjct: 82  LSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLLT 139

Query: 161 SVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSAS--TGFLSF 205
              S ++ +++  A L+  H A R  ++LFLDE+  + +  +G +S+
Sbjct: 140 HATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEASGLMSY 186

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRR1|PRA1E_ARATH PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 81/139 (58%)

Query: 56  RPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVG 115
           RPW E+ D SA S P  + EA   ++ N SYFR NY   V  ++   LI +P S++  + 
Sbjct: 48  RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIV 107

Query: 116 LLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAG 175
           +   WI LY  R ++  +V+ G+   ++  L +L ++++     T VG  ++ ++++G  
Sbjct: 108 VFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLL 167

Query: 176 LICAHGAFRVPEDLFLDEQ 194
           ++ AHGAFR  +DLFLDE+
Sbjct: 168 IVGAHGAFRNTDDLFLDEE 186

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC6|PR1F3_ARATH PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 48  LRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNP 107
           ++ G A RR W  + D  +   P   S+A  RI+ N +YFR+NY  VV +VI FSLI +P
Sbjct: 29  IKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHP 88

Query: 108 FSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILI 167
            SL++   L+  WIFLY  R  D+P+ +F     +R  L VL VL++ +  LT+    ++
Sbjct: 89  TSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIV 146

Query: 168 SAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLS 204
            A++ GA L+  H   R  EDLFLDE+  +  T  L+
Sbjct: 147 GALVTGAVLVLIHSVVRKTEDLFLDEEAATTETSGLT 183

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
297827413	220	prenylated rab acceptor family protein [	0.915	0.936	0.706	1e-82
15224494	220	PRA1 family protein B4 [Arabidopsis thal	0.915	0.936	0.697	3e-82
356496255	219	PREDICTED: PRA1 family protein B4-like [	0.973	1.0	0.657	2e-79
356506863	227	PREDICTED: PRA1 family protein B4-like i	0.924	0.916	0.677	9e-78
449439843	225	PREDICTED: PRA1 family protein B4-like [	0.897	0.897	0.726	6e-76
118481196	224	unknown [Populus trichocarpa]	0.911	0.915	0.698	3e-74
225439548	215	PREDICTED: PRA1 family protein B4 isofor	0.955	1.0	0.706	9e-74
356501201	215	PREDICTED: PRA1 family protein B4-like [	0.893	0.934	0.697	2e-73
118487362	226	unknown [Populus trichocarpa]	0.92	0.915	0.698	3e-73
224091050	222	predicted protein [Populus trichocarpa]	0.968	0.981	0.647	1e-72

>gi|297827413|ref|XP_002881589.1| prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata] gi|297327428|gb|EFH57848.1| prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/208 (70%), Positives = 180/208 (86%), Gaps = 2/208 (0%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M S++PPVLPISN Q T  +++ SSV+SQPP+ATPAFR  IN I+++++ G ++RRPWAE
Sbjct: 1   MASSAPPVLPISNPQ-TVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAE 59

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           LADRSA SKPES S+A +RIRKNYSYF+VNYLTV   ++ FSL+T+PFSL+ L+ LLASW
Sbjct: 60  LADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASW 119

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
           +FLYLFRP+DQP+VVFGRTFS+RETLG LI+ SIFV FLT VGS+L+SA+MVG  LICAH
Sbjct: 120 LFLYLFRPTDQPIVVFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAH 179

Query: 181 GAFRVPEDLFLDEQEPSASTGFLSFIGG 208
           GAFR PEDLFLDEQEP A+TGFLSF+GG
Sbjct: 180 GAFRAPEDLFLDEQEP-AATGFLSFLGG 206

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224494|ref|NP_181370.1| PRA1 family protein B4 [Arabidopsis thaliana] gi|75099986|sp|O80915.1|PR1B4_ARATH RecName: Full=PRA1 family protein B4; Short=AtPRA1.B4 gi|3395436|gb|AAC28768.1| unknown protein [Arabidopsis thaliana] gi|38454104|gb|AAR20746.1| At2g38360 [Arabidopsis thaliana] gi|45592910|gb|AAS68109.1| At2g38360 [Arabidopsis thaliana] gi|110738045|dbj|BAF00957.1| hypothetical protein [Arabidopsis thaliana] gi|330254433|gb|AEC09527.1| PRA1 family protein B4 [Arabidopsis thaliana]

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/208 (69%), Positives = 180/208 (86%), Gaps = 2/208 (0%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M S++PPVLPISN Q T  +++ SSV+SQPP+ATPAFR  IN I+++++ G ++RRPWAE
Sbjct: 1   MASSAPPVLPISNPQ-TVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAE 59

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           LADRSA SKPES S+A +RIRKNYSYF+VNYLTV   ++ FSL+T+PFSL+ L+ LLASW
Sbjct: 60  LADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASW 119

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
           +FLYLFRP+DQP+V+FGRTFS+RETLG LI+ SIFV FLT VGS+L+SA+M+G  LICAH
Sbjct: 120 LFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAH 179

Query: 181 GAFRVPEDLFLDEQEPSASTGFLSFIGG 208
           GAFR PEDLFLDEQEP A+TGFLSF+GG
Sbjct: 180 GAFRAPEDLFLDEQEP-AATGFLSFLGG 206

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496255|ref|XP_003516984.1| PREDICTED: PRA1 family protein B4-like [Glycine max]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 148/225 (65%), Positives = 185/225 (82%), Gaps = 6/225 (2%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M+S + PVLPISN  P TTA+   ++++  P   PAFRA IN++S SLR+G  QRRPW+E
Sbjct: 1   MSSTAAPVLPISN--PQTTAAGGGAIEA--PANNPAFRAFINNLSASLRHGLDQRRPWSE 56

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           L DRSAFSKPESFSEATLR+RKN+SYFRVNY  VV++++A SL+TNPFSL++LVGLLASW
Sbjct: 57  LGDRSAFSKPESFSEATLRVRKNFSYFRVNYYAVVSLILAVSLLTNPFSLILLVGLLASW 116

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
            FLYLFRPSDQPLV+ GRTFS+ ETL +L   ++FV FLTSVGS+L+SA+M+G  ++C H
Sbjct: 117 TFLYLFRPSDQPLVILGRTFSDFETLALLSAFTVFVVFLTSVGSVLVSALMLGVAVVCLH 176

Query: 181 GAFRVPEDLFLDEQEPSASTGFLSFIGGAASNAAATAAPAVSARV 225
           GAFRVPEDLFLD+Q+ S +TGFLSF+ G A  A+ATA P V+ARV
Sbjct: 177 GAFRVPEDLFLDDQDNSQATGFLSFLRGPA--ASATAVPTVAARV 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506863|ref|XP_003522194.1| PREDICTED: PRA1 family protein B4-like isoform 1 [Glycine max] gi|356506865|ref|XP_003522195.1| PREDICTED: PRA1 family protein B4-like isoform 2 [Glycine max]

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 172/208 (82%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M+S +PPVLPISNSQ T   + A     + P   PAFRA IN++S+SLR+G  QRRPW+E
Sbjct: 1   MSSTAPPVLPISNSQTTAGTTGAGGGAIEAPANNPAFRAFINNLSNSLRHGLDQRRPWSE 60

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           LADRSAFSKPESFSEATLR+RKN+SYFRVNY  VV++++A SL+TNPFSL++LVGLLASW
Sbjct: 61  LADRSAFSKPESFSEATLRVRKNFSYFRVNYYAVVSLILAVSLLTNPFSLILLVGLLASW 120

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
            FLYLFRPSDQPLV+ GRTFS+ ETL +L   ++FV FLTSVGS+L+SA+M+G  ++C H
Sbjct: 121 TFLYLFRPSDQPLVILGRTFSDFETLALLSAFTVFVVFLTSVGSVLVSALMLGVAVVCLH 180

Query: 181 GAFRVPEDLFLDEQEPSASTGFLSFIGG 208
           GAFRVPEDLFLD+QE S  TGFLSF+ G
Sbjct: 181 GAFRVPEDLFLDDQENSQPTGFLSFLRG 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439843|ref|XP_004137695.1| PREDICTED: PRA1 family protein B4-like [Cucumis sativus] gi|449531653|ref|XP_004172800.1| PREDICTED: PRA1 family protein B4-like [Cucumis sativus]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 179/205 (87%), Gaps = 3/205 (1%)

Query: 1   MTSASPPVLPISNSQPTTTA--SSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPW 58
           M+S+SP +LPISN Q T     +S  SVQSQ PV TPAFRA INH+S+ LR+G +QRRPW
Sbjct: 1   MSSSSPAILPISNPQSTVVPAPTSGGSVQSQGPVTTPAFRAFINHLSEYLRHGLSQRRPW 60

Query: 59  AELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLA 118
           AELADR+AFSKPESFSEATLRIRKNYSYFRVNYL V+A+++ FSL+++PFSL++L GLL+
Sbjct: 61  AELADRTAFSKPESFSEATLRIRKNYSYFRVNYLAVIALILGFSLVSHPFSLILLAGLLS 120

Query: 119 SWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLIC 178
           SW+FLYLFRPSDQPLV+FGRTF + ETL +L+VLS+FV FLTSVGS+L+SA+MVG  L+C
Sbjct: 121 SWLFLYLFRPSDQPLVLFGRTFKDSETLILLVVLSVFVVFLTSVGSVLVSALMVGVALVC 180

Query: 179 AHGAFRVPEDLFLDEQEPSASTGFL 203
           AHGAFRVPEDLFLDEQE + STGFL
Sbjct: 181 AHGAFRVPEDLFLDEQE-NVSTGFL 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481196|gb|ABK92549.1| unknown [Populus trichocarpa]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/209 (69%), Positives = 185/209 (88%), Gaps = 4/209 (1%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M+S SPPVLPI+N QPTTT ++ +S   QPP+   A RA +N+I++S+R GF+QRRP++E
Sbjct: 1   MSSQSPPVLPITNPQPTTTTTATAS---QPPLPPHALRAFLNNITESVRNGFSQRRPFSE 57

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           L DRSAFSKPES SEAT RIRKNY+YFR+NYLT +++++AFSL+TNPFSLL+LVGLL SW
Sbjct: 58  LIDRSAFSKPESISEATTRIRKNYAYFRINYLTTISLILAFSLLTNPFSLLLLVGLLCSW 117

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
           +FLYLFR SDQPLV+FGRTFS+RETLG+LIVLS+FV FLT+VGS++ISA++VG G++CAH
Sbjct: 118 LFLYLFRASDQPLVLFGRTFSDRETLGILIVLSVFVVFLTNVGSVIISALLVGVGIVCAH 177

Query: 181 GAFRVPEDLFLDEQEPSASTGFL-SFIGG 208
           GAFRVPEDLFLD+ + +ASTGFL SF+GG
Sbjct: 178 GAFRVPEDLFLDDVQENASTGFLSSFLGG 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439548|ref|XP_002263463.1| PREDICTED: PRA1 family protein B4 isoform 1 [Vitis vinifera] gi|359481203|ref|XP_003632592.1| PREDICTED: PRA1 family protein B4 isoform 2 [Vitis vinifera]

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 159/225 (70%), Positives = 194/225 (86%), Gaps = 10/225 (4%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M ++SPP+LPISN  P TTA+S   VQSQPPVATPA R  I HI+DS+R GFAQRRPW+E
Sbjct: 1   MATSSPPILPISN--PETTATS---VQSQPPVATPAVRLFITHITDSVRNGFAQRRPWSE 55

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           L DR+AFS+PESFSEA LR+RKNY+YFRVNYL+++A+ +AFSL+TNPFSLL+L+ LLA+W
Sbjct: 56  LVDRNAFSRPESFSEAALRVRKNYTYFRVNYLSLIALTLAFSLLTNPFSLLLLLSLLAAW 115

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
           +FLYLFRPSD PLV+FGRTFS+RETLG+L+VLS+ V FLTSVGS+LISA+MVGA ++CAH
Sbjct: 116 LFLYLFRPSDPPLVLFGRTFSDRETLGILVVLSVVVIFLTSVGSVLISALMVGAAIVCAH 175

Query: 181 GAFRVPEDLFLDEQEPSASTGFLSFIGGAASNAAATAAPAVSARV 225
           GAFRVP+DLFLDEQ+P A+TGFLSF+G   SN     AP V+ RV
Sbjct: 176 GAFRVPDDLFLDEQDP-AATGFLSFLGATPSN----VAPVVAGRV 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501201|ref|XP_003519415.1| PREDICTED: PRA1 family protein B4-like [Glycine max]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/205 (69%), Positives = 178/205 (86%), Gaps = 4/205 (1%)

Query: 4   ASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAELAD 63
           ASPP LPIS+    ++AS  S+ QSQPP+ATPAFRA I+ IS SLR+ FAQRRPWAEL D
Sbjct: 2   ASPPTLPISS---QSSASGGSASQSQPPIATPAFRAFISRISSSLRHAFAQRRPWAELID 58

Query: 64  RSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFL 123
           RS+ S+P++ +EA  RIRKN+ YFRVNYLT++A+ +A SLIT+PFSL +L GLLASW FL
Sbjct: 59  RSSMSRPDTLAEAYSRIRKNFGYFRVNYLTLIALALAVSLITHPFSLFVLFGLLASWSFL 118

Query: 124 YLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAF 183
           YLFRPSDQPLV+FGRTF++RETLG+L+VL++FV FLTSVGS+LISA+MVG  ++C+HGAF
Sbjct: 119 YLFRPSDQPLVLFGRTFADRETLGILVVLTVFVIFLTSVGSLLISALMVGLAIVCSHGAF 178

Query: 184 RVPEDLFLDEQEPSASTGFLSFIGG 208
           RVPEDLFLD+QEP+ S+GFLSF+GG
Sbjct: 179 RVPEDLFLDDQEPN-SSGFLSFLGG 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487362|gb|ABK95509.1| unknown [Populus trichocarpa]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/209 (69%), Positives = 183/209 (87%), Gaps = 2/209 (0%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M+S SPPVLPI+N QPTTT ++ ++  SQPP+   A RA +N+I++S+R GF+QRRP+ E
Sbjct: 1   MSSQSPPVLPITNLQPTTTTTTTATA-SQPPLPPHALRAFLNNITESVRNGFSQRRPFTE 59

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           L DRSAFSKPES SEAT RIRKNY+YFR+NYL  + V++AFSL+TNPFSLL+LVGLL SW
Sbjct: 60  LIDRSAFSKPESISEATTRIRKNYAYFRINYLAAIFVILAFSLLTNPFSLLLLVGLLCSW 119

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
           +FLYLFR SDQPLV+FGRTFS+RETLG+LIVLS+FV FLT+VGS++ISA++VG G++CAH
Sbjct: 120 LFLYLFRASDQPLVLFGRTFSDRETLGILIVLSVFVVFLTNVGSVIISALLVGVGIVCAH 179

Query: 181 GAFRVPEDLFLDEQEPSASTGFL-SFIGG 208
           GAFRVPEDLFLD+ + +ASTGFL SF+GG
Sbjct: 180 GAFRVPEDLFLDDVQENASTGFLSSFLGG 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091050|ref|XP_002309160.1| predicted protein [Populus trichocarpa] gi|118485492|gb|ABK94601.1| unknown [Populus trichocarpa] gi|222855136|gb|EEE92683.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/224 (64%), Positives = 186/224 (83%), Gaps = 6/224 (2%)

Query: 1   MTSASPPVLPISNSQPTTTASSASSVQSQPPVATPAFRALINHISDSLRYGFAQRRPWAE 60
           M+S SPPVLPI+N Q    A+++            A RA +N+I++S+R GFAQRRP++E
Sbjct: 1   MSSQSPPVLPITNQQQPPAAAASQPPL-----PPHALRAFLNNITESVRNGFAQRRPFSE 55

Query: 61  LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
           L DRSAFSKPES SEAT RIRKNYSYFR+NYLT ++V++AFSL+++PFSLL+L+GLL SW
Sbjct: 56  LIDRSAFSKPESISEATTRIRKNYSYFRINYLTAISVILAFSLLSHPFSLLLLLGLLCSW 115

Query: 121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
           +FLYLFR SDQPLV+FGRT+S+RETLG+LI LS+FV FLTSVGS++ISA++VG G++CAH
Sbjct: 116 LFLYLFRASDQPLVLFGRTYSDRETLGILIALSVFVVFLTSVGSVIISALLVGVGIVCAH 175

Query: 181 GAFRVPEDLFLDEQEPSASTGFL-SFIGGAASNAAATAAPAVSA 223
           GAFRVPEDLFLD+   +A+TGFL SF+G AASN  ++AAP V+A
Sbjct: 176 GAFRVPEDLFLDDVPENANTGFLSSFLGSAASNVVSSAAPLVAA 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2057197	220	PRA1.B4 "AT2G38360" [Arabidops	0.915	0.936	0.649	8.9e-70
TAIR|locus:2153589	217	PRA1.B3 "AT5G05380" [Arabidops	0.875	0.907	0.590	4.3e-61
TAIR|locus:2078371	209	PRA1.B1 "AT3G56110" [Arabidops	0.866	0.933	0.560	3.2e-58
TAIR|locus:2149815	223	PRA1.B5 "AT5G01640" [Arabidops	0.911	0.919	0.560	6.6e-58
TAIR|locus:2063120	213	PRA1.B2 "AT2G40380" [Arabidops	0.871	0.920	0.536	7.8e-55
TAIR|locus:2169364	216	PRA1.B6 "AT5G07110" [Arabidops	0.844	0.879	0.515	1.5e-49
TAIR|locus:4515103315	118	AT4G00005 "AT4G00005" [Arabido	0.422	0.805	0.631	2.4e-28
TAIR|locus:2007948	180	PRA1.F1 "AT1G17700" [Arabidops	0.715	0.894	0.386	1.5e-26
TAIR|locus:2091556	188	PRA8 "AT3G13720" [Arabidopsis	0.693	0.829	0.389	7.6e-25
TAIR|locus:2035701	189	PRA7 [Arabidopsis thaliana (ta	0.724	0.862	0.359	4.2e-24

TAIR|locus:2057197 PRA1.B4 "AT2G38360" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 135/208 (64%), Positives = 165/208 (79%)

Query:     1 MTSASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAE 60
             M S++PPVLPISN                    TPAFR  IN I+++++ G ++RRPWAE
Sbjct:     1 MASSAPPVLPISNPQTVPSAAPSSVESQPPIA-TPAFRNFINQITETVKNGLSKRRPWAE 59

Query:    61 LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
             LADRSA SKPES S+A +RIRKNYSYF+VNYLTV   ++ FSL+T+PFSL+ L+ LLASW
Sbjct:    60 LADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASW 119

Query:   121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
             +FLYLFRP+DQP+V+FGRTFS+RETLG LI+ SIFV FLT VGS+L+SA+M+G  LICAH
Sbjct:   120 LFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAH 179

Query:   181 GAFRVPEDLFLDEQEPSASTGFLSFIGG 208
             GAFR PEDLFLDEQEP+A TGFLSF+GG
Sbjct:   180 GAFRAPEDLFLDEQEPAA-TGFLSFLGG 206

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2153589 PRA1.B3 "AT5G05380" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 121/205 (59%), Positives = 156/205 (76%)

Query:     4 ASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELAD 63
             A+PP LPIS+                    TPAFR  ++ +S S+R   +QRRPW EL D
Sbjct:     3 ANPPTLPISDHSGGGSQSQQPVS-------TPAFRTFLSRLSSSIRQSLSQRRPWLELVD 55

Query:    64 RSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFL 123
             RSA S+PES ++A  RIR+N  YF+VNY+T+V++V+A SL+++PFSLL+L+ L  +WIFL
Sbjct:    56 RSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFL 115

Query:   124 YLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAF 183
             YLFRPSDQPLVV GRTFS+RETLGVL++L+I V FLTSVGS+L SA+M+G G++C HGAF
Sbjct:   116 YLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAF 175

Query:   184 RVPEDLFLDEQEPSASTGFLSFIGG 208
             RVPEDLFLD+QEP A+TG LSF+ G
Sbjct:   176 RVPEDLFLDDQEP-ANTGLLSFLSG 199

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2078371 PRA1.B1 "AT3G56110" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 115/205 (56%), Positives = 152/205 (74%)

Query:     4 ASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELAD 63
             A+PP LP++N                    TPAFR   + +S S+R G +QRRPW EL D
Sbjct:     2 ATPPTLPVTNQQAVQSQPPIN---------TPAFRTFFSRLSTSIRDGLSQRRPWTELID 52

Query:    64 RSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFL 123
             RS+ ++PES ++A  RIRKN +YF+VNY+ +V++V+AFSL ++P SLL+L+GLL  W+FL
Sbjct:    53 RSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFL 112

Query:   124 YLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAF 183
             YLFRPSDQPLVVFGRTFS+RETL  L++ +I V F+TSVGS+L SA+M+G  ++C HGAF
Sbjct:   113 YLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAF 172

Query:   184 RVPEDLFLDEQEPSASTGFLSFIGG 208
              VP+DLFLDEQEP A+ G LSF+GG
Sbjct:   173 VVPDDLFLDEQEP-ANAGLLSFLGG 196

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2149815 PRA1.B5 "AT5G01640" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 116/207 (56%), Positives = 151/207 (72%)

Query:     1 MTSASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAE 60
             M S +PPVLPIS                      P  RA +N +++++  G ++ RPW+E
Sbjct:     1 MVSTNPPVLPISTTATDTTNQPPIVTAVVESQ-PPVVRAFVNGVTETVCGGLSRSRPWSE 59

Query:    61 LADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASW 120
             L DRSAF+KP+S SEA  R RKN SYFRVNY+ +VA+++ FSL+ +PFSL++L+ L ASW
Sbjct:    60 LLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASW 119

Query:   121 IFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAH 180
             +FLYLFRPSD+PL++FGR+FSE ETLG LI+ +I V F TSVGS+LISA+M+G   IC H
Sbjct:   120 LFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVH 179

Query:   181 GAFRVPEDLFLDEQEPSASTGFLSFIG 207
             GAFR P+DLFLDEQ+ +AS GFLSFIG
Sbjct:   180 GAFRAPDDLFLDEQDHAAS-GFLSFIG 205

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2063120 PRA1.B2 "AT2G40380" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 110/205 (53%), Positives = 151/205 (73%)

Query:     3 SASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELA 62
             S+SP +LP++N                      AFR  ++ +S SLR   +QRRPW EL 
Sbjct:     2 SSSPAILPVTNQQAATQSQPPINSH--------AFRTFLSRLSSSLRESLSQRRPWLELV 53

Query:    63 DRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIF 122
             DRS+F++P+S +++  RIRKN +YF+VNY  +V++V+AFSL+++PFSLL+L+ LL SW+F
Sbjct:    54 DRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMF 113

Query:   123 LYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGA 182
             LYLFR SDQPLV+FGR+FS+RETL  L++ +I V F+TSVGS+L SA+ +G  ++C HGA
Sbjct:   114 LYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGA 173

Query:   183 FRVPEDLFLDEQEPSASTGFLSFIG 207
             FRVP+DLFLDEQEP A+ G LSFIG
Sbjct:   174 FRVPDDLFLDEQEP-ANAGLLSFIG 197

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2169364 PRA1.B6 "AT5G07110" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 98/190 (51%), Positives = 131/190 (68%)

Query:    36 AFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVV 95
             + R L++ +  ++R+  A  RPWAEL DRSAFS+P S SEAT R+RKN+SYFR NY+T+V
Sbjct:    25 SLRVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLV 84

Query:    96 AVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIF 155
             A+++A SL+T+PF+L +L  L ASW+FLY FRP+DQPLV+ GRTFS+ ETLG+L + ++ 
Sbjct:    85 AILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVV 144

Query:   156 VFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLSFIGGXXXXXXX 215
             V F+TSVGS+L+S + VG   +  HGAFR PEDLFL+EQE   S  F  F          
Sbjct:   145 VMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAIGSGLFAFFNNNASNAAAA 204

Query:   216 XXXXXXXXRV 225
                     RV
Sbjct:   205 AIATSAMSRV 214

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:4515103315 AT4G00005 "AT4G00005" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 60/95 (63%), Positives = 80/95 (84%)

Query:    79 RIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGR 138
             R  KN SYFRVNY+ ++A++I+FSL  +PFSL++L+ L ASW+FLYLFRPSD+PL++ GR
Sbjct:     3 RFWKNSSYFRVNYVCIIALIISFSLPAHPFSLILLLCLAASWLFLYLFRPSDRPLILIGR 62

Query:   139 TFSERETLGVLIVLSIFVFFLTSVGSILISAVMVG 173
             +FSE ETLG LI+ +I V F TSVGS+LISA+M+G
Sbjct:    63 SFSEYETLGGLILSTIAVIFFTSVGSVLISALMIG 97

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2007948 PRA1.F1 "AT1G17700" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 63/163 (38%), Positives = 90/163 (55%)

Query:    35 PAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTV 94
             P    +   I+   R G A RRPW ++ D  +F+ P   +    RIR N  YF+ NY  V
Sbjct:    16 PKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIV 75

Query:    95 VAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSI 154
             V   +  SLI NPFSLL+L+ LL +W+FLY  R  D+PL VF R    R  L ++ V+++
Sbjct:    76 VLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLR--DEPLTVFDREIDHRIVLIIMSVITL 133

Query:   155 FVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPS 197
              + FLT     +  A++ GA  + +H A R  EDLF  ++E S
Sbjct:   134 SILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETS 176

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

TAIR|locus:2091556 PRA8 "AT3G13720" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 62/159 (38%), Positives = 91/159 (57%)

Query:    48 LRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNP 107
             ++ G A RR W  + D  +   P   S+A  RI+ N +YFR+NY  VV +VI FSLI +P
Sbjct:    29 IKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHP 88

Query:   108 FSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILI 167
              SL++   L+  WIFLY  R  D+P+ +F     +R  L VL VL++ +  LT+    ++
Sbjct:    89 TSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIV 146

Query:   168 SAVMVGAGLICAHGAFRVPEDLFLDEQEPSAST-GFLSF 205
              A++ GA L+  H   R  EDLFLDE+  +  T G  S+
Sbjct:   147 GALVTGAVLVLIHSVVRKTEDLFLDEEAATTETSGLTSY 185

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2035701 PRA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 60/167 (35%), Positives = 94/167 (56%)

Query:    41 INHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIA 100
             I+     ++ G A RRPW  + D  + + P  F +A  RI+ N  YFR NY   V  ++ 
Sbjct:    22 ISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILF 81

Query:   101 FSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLT 160
              SL+ +P SL++L  L+  WIFLY  R  D+PLVVFG    +R  L  L VL++ +  LT
Sbjct:    82 LSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLLT 139

Query:   161 SVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSAS--TGFLSF 205
                S ++ +++  A L+  H A R  ++LFLDE+  + +  +G +S+
Sbjct:   140 HATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEASGLMSY 186

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80915	PR1B4_ARATH	No assigned EC number	0.6971	0.9155	0.9363	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam03208	153	pfam03208, PRA1, PRA1 family protein	4e-54
COG5130	169	COG5130, YIP3, Prenylated rab acceptor 1 and relat	2e-08

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score =  170 bits (432), Expect = 4e-54
 Identities = 79/150 (52%), Positives = 108/150 (72%), Gaps = 1/150 (0%)

Query: 47  SLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITN 106
           S++   A  RPW+E  DRS FS+P SFSEAT R+R+N  YF+ NY  VV  V+  SL+TN
Sbjct: 1   SVQSRLAPLRPWSEFFDRSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTN 60

Query: 107 PFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSIL 166
           P SL++L+ L+A+W+FLY  RP ++PLV+FGRTFS+R+ L  L+V+S+ + FLTS GS+L
Sbjct: 61  PLSLIVLLVLVAAWLFLYFLRP-NEPLVLFGRTFSDRQVLIGLLVVSVPLLFLTSAGSVL 119

Query: 167 ISAVMVGAGLICAHGAFRVPEDLFLDEQEP 196
           +  +  G  L+ AH AFR+  DLFLDE E 
Sbjct: 120 LWLLGAGLLLVLAHAAFRLRNDLFLDENEA 149

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

>gnl|CDD|227459 COG5130, YIP3, Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

Query: 68  SKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFR 127
           S P++F+EA  R+  N   F  NYL ++A++  + L+ N   LL+++G++ + ++  + +
Sbjct: 42  SVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLL-LLIVIGIVVAGVY-GIRK 99

Query: 128 PSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAF 183
              +PLV              L+ + I   F  S    L+        ++  H A 
Sbjct: 100 LRGRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAAL 155

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	100.0
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	100.0
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	99.88
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	99.87
COG1955	527	FlaJ Archaeal flagella assembly protein J [Cell mo	89.12

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-52  Score=352.78  Aligned_cols=177  Identities=47%  Similarity=0.856  Sum_probs=170.4

Q ss_pred             CCCCCCchHHHHHHHHHHHhhhhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 027328           28 SQPPVATPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNP  107 (225)
Q Consensus        28 ~~~~~~~~a~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P  107 (225)
                      ++.+++++..+.+.+|.+|+++..++++|||+||+|+++|++|+|++|+.+|+|+|+.|||.||.+++.+++++++++||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~lst~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P   89 (187)
T KOG3142|consen   10 SSSPSQALSVESISSRAKQTIQSGLSTRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHP   89 (187)
T ss_pred             CCCcccccchhhHHHHHHHHHHHHHhccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhH
Confidence            45556677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCeEEcceeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 027328          108 FSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE  187 (225)
Q Consensus       108 ~~Llvll~l~~~w~~ly~~R~~~~pl~i~gr~~s~~~~~~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~  187 (225)
                      ++|+++++++++|+|+|+.|  |+|++++||+++|+++++++++++++++|+++++++++|++++|+++|+.||+||++|
T Consensus        90 ~~Livl~~lv~~w~~LY~~r--d~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~d  167 (187)
T KOG3142|consen   90 LSLIVLLALVAAWLFLYFLR--DEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNTD  167 (187)
T ss_pred             HHHHHHHHHHHHHHheeeec--CCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhChH
Confidence            99999999999999999988  7899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCceeeec
Q 027328          188 DLFLDEQEPSASTGFLSFIG  207 (225)
Q Consensus       188 dlflde~e~~~~~g~~s~~~  207 (225)
                      |+|+||||+. .+|++|+.+
T Consensus       168 dLF~dee~~~-~~gl~s~~~  186 (187)
T KOG3142|consen  168 DLFLDEEEAA-ASGLLSFSS  186 (187)
T ss_pred             hhhhhhhhcc-cccccccCC
Confidence            9999999988 789999865

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=100.00  E-value=2.1e-37  Score=253.18  Aligned_cols=149  Identities=39%  Similarity=0.655  Sum_probs=140.0

Q ss_pred             hhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccC
Q 027328           49 RYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRP  128 (225)
Q Consensus        49 ~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~w~~ly~~R~  128 (225)
                      +.+++++|||+||+|.++|+.|+|++|+.+|+++|+.|||+||++++++++++++++||+.++++++++++|.+++..+.
T Consensus         2 ~~~~~~~Rpw~eF~~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~   81 (153)
T PF03208_consen    2 QSRLSPLRPWREFFDTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK   81 (153)
T ss_pred             ccccCCCCCHHHHhCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCeEEcceeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 027328          129 SDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPS  197 (225)
Q Consensus       129 ~~~pl~i~gr~~s~~~~~~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~dlflde~e~~  197 (225)
                      ++++++++|+++++++++.++.+++++++++++++.+++|++++++++|++||+||+||+++.||+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~  150 (153)
T PF03208_consen   82 ENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIE  150 (153)
T ss_pred             cCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHh
Confidence            468899999999999999999999999999999999999999999999999999999999877777654

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.88  E-value=5.4e-22  Score=164.05  Aligned_cols=135  Identities=13%  Similarity=0.280  Sum_probs=106.3

Q ss_pred             hhcCCCCCChhHhh-CCCCCCCCC--ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHHH
Q 027328           49 RYGFAQRRPWAELA-DRSAFSKPE--SFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLAS--WIFL  123 (225)
Q Consensus        49 ~~~l~~~RPW~EF~-d~~~fs~P~--s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~--w~~l  123 (225)
                      +.++++.|.|+||+ +..||.+|+  |+++|++|+.+||.|||+||++++..++.+..+.+|..+++.+++.+.  ..++
T Consensus        13 ~v~lpPlRa~ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~li   92 (188)
T KOG4050|consen   13 GVELPPLRALDDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLI   92 (188)
T ss_pred             CCCCCcchhHHHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            46789999999986 889999999  999999999999999999999999999999999999888877666432  2223


Q ss_pred             HhccCCCCCeEEcceeccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 027328          124 YLFRPSDQPLVVFGRTFSERETL--GVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE  187 (225)
Q Consensus       124 y~~R~~~~pl~i~gr~~s~~~~~--~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~  187 (225)
                      +... .++.++   |-.++++.+  .+...++++++.+.++..+..+++..+++++++||++|.++
T Consensus        93 wa~~-~~a~~k---rmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn  154 (188)
T KOG4050|consen   93 WAAS-ADANIK---RMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN  154 (188)
T ss_pred             HHHh-ccHHHH---HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2221 122221   333455554  46677888888877777777779999999999999999884

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=99.87  E-value=5.5e-22  Score=161.12  Aligned_cols=141  Identities=21%  Similarity=0.223  Sum_probs=124.8

Q ss_pred             hhhhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 027328           47 SLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLF  126 (225)
Q Consensus        47 ~~~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~w~~ly~~  126 (225)
                      +..+.+.+.+.-+||||..|.++|++++|+.+|+-.|++||+.||..+...+.+|.+++||..|+++.+..++.+.+.+.
T Consensus        21 s~~q~L~~~~~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl  100 (169)
T COG5130          21 SIKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKL  100 (169)
T ss_pred             HHHHHhcCcccHHHHhccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhc
Confidence            33444567888899999999999999999999999999999999999999999999999998888888777776667777


Q ss_pred             cCCCCCeEEcceeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 027328          127 RPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDL  189 (225)
Q Consensus       127 R~~~~pl~i~gr~~s~~~~~~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~dl  189 (225)
                      |  ++|++..-+..+..+.|.+++++.+++.|+.+...+++|..+++.++++.||++..++-.
T Consensus       101 ~--g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~e  161 (169)
T COG5130         101 R--GRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPLE  161 (169)
T ss_pred             c--cCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCccc
Confidence            6  567777667777788899999999999999999999999999999999999999987544

>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.12  E-value=4.2  Score=40.11  Aligned_cols=59  Identities=8%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027328           36 AFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVV   98 (225)
Q Consensus        36 a~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l   98 (225)
                      -+++|+.|+...+    ..--+..||+.++....=++.+...+|.-++++-|+.=|.-+.+-+
T Consensus       120 ~l~dfL~Rla~ai----~sGe~~~eFl~~E~~~~~~~y~~~Yer~LeSl~~~~diY~sll~S~  178 (527)
T COG1955         120 ILADFLDRLAYAL----DSGEDLKEFLEREQDTTMDEYETEYERALESLDVWKDIYVSLLVSL  178 (527)
T ss_pred             HHHHHHHHHHHhh----hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777777665    4557789999888777777899999999999999999998655433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00