Citrus Sinensis ID: 027347

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMYI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccccccHHHccccccEEEEEEccccEEcccccccccccccccccccHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccHHHHHEEEEEEHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHEEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccEEcc
Coil and Loop (DISEMBL)
MVVTLQTliltprpskmlsswhrnshfrasgslrfspfvtfspgrsisrpiracrpsdqdfasskglnwakPLLKIAADNFLPLALIGGvafgfanpslgcladkyqlskfsTFAIFIVSGLtlrsgeigaaaeawpVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLAlfscmpttlssgVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMYI
Flexible Loop (DISEMBL)
mvvtlqtliltprpskmlssWHRNSHFrasgslrfspFVTFspgrsisrpiracRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMYI
Low Complexity Region (SEG)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMYI
Disordered region (IsUnstruct)
******TLIL**********************LRFSPFVTF***********************KGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMY*
Disordered Region (DISOPRED)
*********************************************************************AKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMYI
Disordered Region (DISEMBL)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMYI
Disordered Region (DISPRO)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMYI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVMYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q6ESG1	423	Probable sodium/metabolit	yes	no	0.611	0.323	0.693	3e-50
B8AJ09	423	Probable sodium/metabolit	N/A	no	0.611	0.323	0.693	3e-50
F4IZC4	436	Probable sodium/metabolit	yes	no	0.763	0.392	0.573	7e-49
Q7T0V6	343	Sodium/bile acid cotransp	N/A	no	0.504	0.329	0.344	1e-05
Q52KD1	343	Sodium/bile acid cotransp	N/A	no	0.504	0.329	0.336	2e-05
Q28HF8	343	Sodium/bile acid cotransp	yes	no	0.504	0.329	0.336	3e-05
Q0GE19	358	Sodium/bile acid cotransp	yes	no	0.625	0.391	0.292	0.0001
Q5PT53	340	Sodium/bile acid cotransp	yes	no	0.625	0.411	0.285	0.0004
Q5PT50	340	Sodium/bile acid cotransp	yes	no	0.549	0.361	0.325	0.0004
Q5ZJH8	333	Sodium/bile acid cotransp	yes	no	0.504	0.339	0.314	0.0006

>sp|Q6ESG1|BASS4_ORYSJ Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS4 PE=3 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 113/137 (82%)

Query: 77  AADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136
           A  NFLPLALI G+A    +P+LGCLA KY LSK+STF IF++SGLTLR+ E+GAA EAW
Sbjct: 92  ARSNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAW 151

Query: 137 PVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSA 196
           P G+FGL SILLFTP+ ++ I+Q++  P EF+TGLA+F CMPTTLSSGV LT L GGN+A
Sbjct: 152 PAGLFGLASILLFTPFLAQFIMQIKFFPHEFITGLAMFCCMPTTLSSGVTLTQLVGGNTA 211

Query: 197 LALAMTIISNLLGIMIV 213
           LALAMT ISNLLGIMIV
Sbjct: 212 LALAMTAISNLLGIMIV 228

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8AJ09|BASS4_ORYSI Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. indica GN=BASS4 PE=3 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 113/137 (82%)

Query: 77  AADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136
           A  NFLPLALI G+A    +P+LGCLA KY LSK+STF IF++SGLTLR+ E+GAA EAW
Sbjct: 92  ARSNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAW 151

Query: 137 PVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSA 196
           P G+FGL SILLFTP+ ++ I+Q++  P EF+TGLA+F CMPTTLSSGV LT L GGN+A
Sbjct: 152 PAGLFGLASILLFTPFLAQFIMQIKFFPHEFITGLAMFCCMPTTLSSGVTLTQLVGGNTA 211

Query: 197 LALAMTIISNLLGIMIV 213
           LALAMT ISNLLGIMIV
Sbjct: 212 LALAMTAISNLLGIMIV 228

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

>sp|F4IZC4|BASS4_ARATH Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Arabidopsis thaliana GN=BASS4 PE=3 SV=1

 Score =  193 bits (491), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/204 (57%), Positives = 141/204 (69%), Gaps = 33/204 (16%)

Query: 45  RSISRPIRACRPSDQ-------DF--------------------------ASSKGLNWAK 71
           R ISR IRAC+PSD+       DF                          AS++ L + K
Sbjct: 40  RWISRSIRACQPSDKVSGQFPFDFMYSSMLIPSSCGEWNRIHLGGDGGISASAQRLYFGK 99

Query: 72  PLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGA 131
            LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SGLTLR+  IGA
Sbjct: 100 ELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISGLTLRTEAIGA 159

Query: 132 AAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLA 191
           A + WP+G+FGL SILL TP FS+LI+ VQLQP+E VTGL +F CMPTTLSSGVALTHLA
Sbjct: 160 AVKGWPLGLFGLISILLLTPSFSRLIMLVQLQPRELVTGLGIFCCMPTTLSSGVALTHLA 219

Query: 192 GGNSALALAMTIISNLLGIMIVSY 215
           GGN+ALALA+T+ SNLLGI+ + +
Sbjct: 220 GGNAALALAVTVASNLLGILTIPF 243

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7T0V6|NTP7A_XENLA Sodium/bile acid cotransporter 7-A OS=Xenopus laevis GN=slc10a7-a PE=2 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 100 GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159
           G L  +  ++  +  AIF  SGL+L++ E+  A     + +F     L+F P    L LQ
Sbjct: 34  GPLKPEITITYIAVSAIFFNSGLSLKTEELTNALMHVKLHLFVQLFTLVFFPTAIWLFLQ 93

Query: 160 V-QLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMI 212
           V  L P  +  + GL   SCMP  +SS V LT   GGN A A+  +   + LGI++
Sbjct: 94  VLSLTPINEWLLKGLQTVSCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLGIVV 149

Xenopus laevis (taxid: 8355)

>sp|Q52KD1|NTP7B_XENLA Sodium/bile acid cotransporter 7-B OS=Xenopus laevis GN=slc10a7-b PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 100 GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159
           G L  +  ++  +  AIF  SGL+L++ E+  A     + +F     L+F P    + LQ
Sbjct: 34  GPLKPEITITYIAVSAIFFNSGLSLKTEELTNALMHVKLHLFVQLFTLVFFPTAIWIFLQ 93

Query: 160 V-QLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMI 212
           V  L P  +  + GL   SCMP  +SS V LT   GGN A A+  +   + LGI++
Sbjct: 94  VLSLTPINEWLLKGLQTVSCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLGIVV 149

Xenopus laevis (taxid: 8355)

>sp|Q28HF8|NTCP7_XENTR Sodium/bile acid cotransporter 7 OS=Xenopus tropicalis GN=slc10a7 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 100 GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159
           G L  +  ++  +  AIF  SGL+L++ E+  A     + +F     L+F P    + LQ
Sbjct: 34  GPLKPEITITYIAVSAIFFNSGLSLKTEELTNALMHVKLHLFVQLFTLVFFPTAIWVFLQ 93

Query: 160 V-QLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMI 212
           V  L P  +  + GL   SCMP  +SS V LT   GGN A A+  +   + LGI++
Sbjct: 94  VLSLTPINEWLLKGLQTVSCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLGIVV 149

Xenopus tropicalis (taxid: 8364)

>sp|Q0GE19|NTCP7_HUMAN Sodium/bile acid cotransporter 7 OS=Homo sapiens GN=SLC10A7 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 73  LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
           LL+    ++  + ++  +A     PS+G     L  +  +S  +   IF  SGL+L++ E
Sbjct: 3   LLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEE 62

Query: 129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQV-QLQP--QEFVTGLALFSCMPTTLSSGV 185
           + +A     + +F     L F P    L LQ+  + P  +  + GL    CMP  +SS V
Sbjct: 63  LTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSSAV 122

Query: 186 ALTHLAGGNSALALAMTIISNLLGIMI 212
            LT   GGN A A+  +   + LGI+I
Sbjct: 123 ILTKAVGGNEAAAIFNSAFGSFLGIVI 149

Homo sapiens (taxid: 9606)

>sp|Q5PT53|NTCP7_MOUSE Sodium/bile acid cotransporter 7 OS=Mus musculus GN=Slc10a7 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 73  LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
           LL+ A   +  + ++  +      PS+G     L  +  +S  +   IF  SGL+L++ E
Sbjct: 3   LLERARKEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEE 62

Query: 129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQ---VQLQPQEFVTGLALFSCMPTTLSSGV 185
           + +A     + +F     L F P    L LQ   V    +  + GL    CMP  +SS V
Sbjct: 63  LTSALVHLRLHLFIQIFTLAFFPAAIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAV 122

Query: 186 ALTHLAGGNSALALAMTIISNLLGIMI 212
            LT   GGN A A+  +   + LGI++
Sbjct: 123 ILTKAVGGNEAAAIFNSAFGSFLGIVV 149

Mus musculus (taxid: 10090)

>sp|Q5PT50|NTCP7_RAT Sodium/bile acid cotransporter 7 OS=Rattus norvegicus GN=Slc10a7 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 90  VAFGFA--NPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGL 143
           VA G A   PS+G     L  +  +S  +   IF  SGL+L++ E+ +A     + +F  
Sbjct: 18  VAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEELTSALVHLKLHLFIQ 77

Query: 144 FSILLFTPYFSKLILQ---VQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA 200
              L F P    L LQ   V    +  + GL    CMP  +SS V LT   GGN A A+ 
Sbjct: 78  VFTLAFFPTTIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIF 137

Query: 201 MTIISNLLGIMI 212
            +   + LGI++
Sbjct: 138 NSAFGSFLGIVV 149

Rattus norvegicus (taxid: 10116)

>sp|Q5ZJH8|NTCP7_CHICK Sodium/bile acid cotransporter 7 OS=Gallus gallus GN=SLC10A7 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 87  IGGVAFGFA----NPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPV 138
           I G+A   A     P++G     L  +  ++  +  AIF  SGL+L++ E+ +A     +
Sbjct: 13  IAGIALVIAAARLEPAVGVKGGPLKPEITITYIAVSAIFFNSGLSLKTEELTSALMHVKL 72

Query: 139 GIFGLFSILLFTPYFSKLILQV-QLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNS 195
            +F     L+F P    L LQ+  + P  +  + GL    CMP  +SS V LT   GGN 
Sbjct: 73  HLFVQIFTLVFFPTAIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNE 132

Query: 196 ALAL 199
           A A+
Sbjct: 133 AAAI 136

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
296087978	448	unnamed protein product [Vitis vinifera]	0.959	0.479	0.638	3e-65
225464144	419	PREDICTED: sodium/bile acid cotransporte	0.959	0.513	0.638	3e-65
255568038	423	bile acid:sodium symporter, putative [Ri	0.937	0.496	0.607	2e-63
449468358	428	PREDICTED: probable sodium/metabolite co	0.852	0.446	0.605	1e-59
356534671	426	PREDICTED: sodium/bile acid cotransporte	0.879	0.462	0.566	5e-59
224100629	264	predicted protein [Populus trichocarpa]	0.651	0.553	0.773	4e-58
296084927	419	unnamed protein product [Vitis vinifera]	0.763	0.408	0.613	7e-53
148906788	426	unknown [Picea sitchensis]	0.741	0.389	0.636	4e-52
413946593	400	hypothetical protein ZEAMMB73_815392, pa	0.785	0.44	0.609	4e-51
413946592	259	hypothetical protein ZEAMMB73_815392, pa	0.888	0.768	0.556	8e-51

>gi|296087978|emb|CBI35261.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 161/224 (71%), Gaps = 9/224 (4%)

Query: 1   MVVTLQTLILTPRPSKML---SSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPS 57
           M   +QTLIL P   K L   +    N+      + + S  +      S S PI A + S
Sbjct: 1   MAAIIQTLILRPPHPKTLPHPTPITSNAIRFCISTHKCSLLLRKPHSVSKSFPITAAQHS 60

Query: 58  ------DQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKF 111
                  Q  +S K L WAKPLL   ADNFLPLAL+ GVA G ANP+LGCLAD+Y LSK 
Sbjct: 61  AQGDDASQAASSGKALIWAKPLLSFVADNFLPLALVSGVALGLANPTLGCLADRYSLSKV 120

Query: 112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGL 171
           STF IFI+SGL LRSGEIGAAAEAWPVGIFGL SILLFTP FS+LILQ QLQPQEF+TGL
Sbjct: 121 STFGIFIISGLMLRSGEIGAAAEAWPVGIFGLGSILLFTPLFSRLILQFQLQPQEFITGL 180

Query: 172 ALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSY 215
           A+FSCMPTTLSSGVALT LAGGNSALALAMT+ISNLLGI+IV +
Sbjct: 181 AIFSCMPTTLSSGVALTQLAGGNSALALAMTVISNLLGILIVPF 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464144|ref|XP_002266805.1| PREDICTED: sodium/bile acid cotransporter 7-like [Vitis vinifera]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 161/224 (71%), Gaps = 9/224 (4%)

Query: 1   MVVTLQTLILTPRPSKML---SSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPS 57
           M   +QTLIL P   K L   +    N+      + + S  +      S S PI A + S
Sbjct: 1   MAAIIQTLILRPPHPKTLPHPTPITSNAIRFCISTHKCSLLLRKPHSVSKSFPITAAQHS 60

Query: 58  ------DQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKF 111
                  Q  +S K L WAKPLL   ADNFLPLAL+ GVA G ANP+LGCLAD+Y LSK 
Sbjct: 61  AQGDDASQAASSGKALIWAKPLLSFVADNFLPLALVSGVALGLANPTLGCLADRYSLSKV 120

Query: 112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGL 171
           STF IFI+SGL LRSGEIGAAAEAWPVGIFGL SILLFTP FS+LILQ QLQPQEF+TGL
Sbjct: 121 STFGIFIISGLMLRSGEIGAAAEAWPVGIFGLGSILLFTPLFSRLILQFQLQPQEFITGL 180

Query: 172 ALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSY 215
           A+FSCMPTTLSSGVALT LAGGNSALALAMT+ISNLLGI+IV +
Sbjct: 181 AIFSCMPTTLSSGVALTQLAGGNSALALAMTVISNLLGILIVPF 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568038|ref|XP_002524996.1| bile acid:sodium symporter, putative [Ricinus communis] gi|223535740|gb|EEF37403.1| bile acid:sodium symporter, putative [Ricinus communis]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/219 (60%), Positives = 161/219 (73%), Gaps = 9/219 (4%)

Query: 1   MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIR--ACRPSD 58
           M   +Q+LIL+PR  +  S   R+ +FR+      +P+ +    R +  PI+  AC+  D
Sbjct: 1   MAGIVQSLILSPRSLQPPSIQQRHPNFRSI----CNPY-SLKRTRCVPSPIKIKACQQPD 55

Query: 59  QDFASSKGLN--WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAI 116
           Q  +   GL   W++PL     +NFLP+ALIGGV  G ANPSLGCLADK  LSK STF I
Sbjct: 56  QGDSKVSGLANVWSQPLFSFVENNFLPMALIGGVVVGLANPSLGCLADKCYLSKVSTFGI 115

Query: 117 FIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSC 176
           F +SGLTLR+GEIGAA EAW VG+FGL SIL  TPYFS++ILQ+QLQPQEFVTGLALF C
Sbjct: 116 FFISGLTLRNGEIGAALEAWLVGVFGLCSILFITPYFSRIILQIQLQPQEFVTGLALFCC 175

Query: 177 MPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSY 215
           MPTTLSSGVALT LAGGNSALALAMT+ISNLLGI+I+ +
Sbjct: 176 MPTTLSSGVALTQLAGGNSALALAMTVISNLLGILIIPF 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468358|ref|XP_004151888.1| PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic-like [Cucumis sativus] gi|449521070|ref|XP_004167554.1| PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic-like [Cucumis sativus]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/203 (60%), Positives = 149/203 (73%), Gaps = 12/203 (5%)

Query: 25  SHFRASGSLRFSPFVTFSPGRSISRPIRACR-PSDQD-----------FASSKGLNWAKP 72
           SHF ++ +L  S  +  +  R    PIRAC  P  +D             S K ++W + 
Sbjct: 31  SHFSSNVALLPSTSLALNRKRRSYCPIRACGLPDKKDDGGRINEPTSVSGSEKRVSWFET 90

Query: 73  LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAA 132
           L   A +NFLPLAL+ GVA G ANPSLGCLAD+Y LSKFSTF IF++SGLTLR+ EI A+
Sbjct: 91  LSTFANNNFLPLALVTGVAVGVANPSLGCLADRYYLSKFSTFGIFVISGLTLRTSEISAS 150

Query: 133 AEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAG 192
            EAWPV ++GL SILL TPYFS+LILQ+ LQPQEFVTGLA+FSCMPTTLSSGVALT LAG
Sbjct: 151 VEAWPVAVYGLVSILLLTPYFSRLILQIHLQPQEFVTGLAIFSCMPTTLSSGVALTQLAG 210

Query: 193 GNSALALAMTIISNLLGIMIVSY 215
           GNSALALAMT+ISN+LGI+ + +
Sbjct: 211 GNSALALAMTVISNMLGILAIPF 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534671|ref|XP_003535876.1| PREDICTED: sodium/bile acid cotransporter 7-like [Glycine max]

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 150/217 (69%), Gaps = 20/217 (9%)

Query: 6   QTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRP-----IRACRPSDQ- 59
            +L LTP P+   S  HR  H  A  +L           RS++R      +RAC  S Q 
Sbjct: 25  HSLTLTPFPATASSFRHR--HLYAVKALTL---------RSVTRRLKPALVRACDRSQQM 73

Query: 60  ---DFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAI 116
                  +KGL+W +P+L  A  N LPLAL+  V  G   PS+GC+ADKY +SK   F I
Sbjct: 74  GGNGSKETKGLSWVEPILTFARRNILPLALVSAVTLGLTYPSIGCVADKYGVSKIGPFGI 133

Query: 117 FIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSC 176
           F++SGL LRS EIGAA EAWPVG+FGL SIL  TPYFS++ILQ+QLQPQEF+TGLA+F+C
Sbjct: 134 FVISGLMLRSEEIGAAVEAWPVGLFGLVSILFLTPYFSRVILQIQLQPQEFITGLAIFAC 193

Query: 177 MPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIV 213
           MPTTLSSGVALT LAGGNSALALAMT+ISN+LGI+I+
Sbjct: 194 MPTTLSSGVALTQLAGGNSALALAMTVISNMLGILII 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100629|ref|XP_002311952.1| predicted protein [Populus trichocarpa] gi|222851772|gb|EEE89319.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 127/146 (86%)

Query: 71  KPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIG 130
           K LL  A +NFLPLALIGGV  G ANP+LGCLADKY LSKFSTFAIFI SGLTLR+GEIG
Sbjct: 3   KSLLNFADNNFLPLALIGGVVSGLANPTLGCLADKYYLSKFSTFAIFITSGLTLRNGEIG 62

Query: 131 AAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHL 190
            A EAWPVG+ G+ SILLFTP+ SK+ILQ+QLQPQEFVTGLA+F CMPTTLSSGVALT L
Sbjct: 63  DAIEAWPVGVLGICSILLFTPFLSKIILQIQLQPQEFVTGLAIFCCMPTTLSSGVALTQL 122

Query: 191 AGGNSALALAMTIISNLLGIMIVSYL 216
           AGGNSALAL MT++SNLLGI+I  ++
Sbjct: 123 AGGNSALALVMTVVSNLLGILIAPFI 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084927|emb|CBI28336.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 130/181 (71%), Gaps = 10/181 (5%)

Query: 45  RSISRPIRACRPSDQD----------FASSKGLNWAKPLLKIAADNFLPLALIGGVAFGF 94
           RS SR IRA   S Q           F S   L+  K L      NFLP+ALI GVA G 
Sbjct: 45  RSFSRTIRAVESSGQGNSDGSNHGKIFNSVNTLSLTKALSNFVVSNFLPIALISGVALGI 104

Query: 95  ANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFS 154
            NP+LGC+A +Y LS  STF IFI++GL L+ GEIGA AEAWP  +FGL SILL +P+FS
Sbjct: 105 TNPTLGCIAHRYSLSTISTFGIFIITGLKLQGGEIGAVAEAWPALVFGLVSILLLSPFFS 164

Query: 155 KLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVS 214
           K+ILQ+QL PQEFVTGLA+FSCMPTTLSSGVALT L  GN+ALALAMT++SNLLGI+IV 
Sbjct: 165 KIILQIQLAPQEFVTGLAIFSCMPTTLSSGVALTQLVCGNAALALAMTVMSNLLGILIVP 224

Query: 215 Y 215
           +
Sbjct: 225 F 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148906788|gb|ABR16540.1| unknown [Picea sitchensis]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 128/168 (76%), Gaps = 2/168 (1%)

Query: 54  CRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFST 113
           C+P  +    +K L+  KP+LK A  NFLPLALI GV  G  NP  GCLA KY LS +ST
Sbjct: 72  CQP--RHLTVAKVLDTVKPVLKFARTNFLPLALITGVTIGLVNPVPGCLAQKYSLSNWST 129

Query: 114 FAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLAL 173
           F IF+VSGLTLRSGE+ AA EAWP G FGL SILLFTP+ S+L+LQ++L PQEFVTGLA+
Sbjct: 130 FGIFLVSGLTLRSGEMSAAIEAWPAGAFGLVSILLFTPFISRLVLQLKLIPQEFVTGLAM 189

Query: 174 FSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV 221
           F CMPTTLSSGVALT + GGNSALAL++T+ SNLLGI+ V ++    V
Sbjct: 190 FCCMPTTLSSGVALTQVVGGNSALALSLTVASNLLGIVTVPFMLSKLV 237

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413946593|gb|AFW79242.1| hypothetical protein ZEAMMB73_815392, partial [Zea mays]

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/182 (60%), Positives = 131/182 (71%), Gaps = 6/182 (3%)

Query: 36  SPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKP----LLKIAADNFLPLALIGGVA 91
           +P V+  P R   RP+RA         S  G   A P    LL  A  NFLPLAL+ GV 
Sbjct: 33  TPVVSAVPLRL--RPLRAAAGGAASPVSGDGGKRAVPPPAALLVFARSNFLPLALVSGVI 90

Query: 92  FGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTP 151
           FG  +P+LGCLA KY LSKFSTF IFI+SGLTLR+ E+G A EAWP G++GL S+LLFTP
Sbjct: 91  FGLLDPTLGCLAHKYSLSKFSTFGIFIMSGLTLRTKELGTALEAWPAGLYGLGSVLLFTP 150

Query: 152 YFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIM 211
           + S+ I+QVQ  P+EF+TGLA+F CMPTTLSSGV LT L GGNSALALAMT+ SNLLGI+
Sbjct: 151 FLSQFIMQVQFSPREFITGLAIFCCMPTTLSSGVILTQLVGGNSALALAMTVASNLLGII 210

Query: 212 IV 213
           IV
Sbjct: 211 IV 212

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413946592|gb|AFW79241.1| hypothetical protein ZEAMMB73_815392, partial [Zea mays]

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 138/205 (67%), Gaps = 6/205 (2%)

Query: 13  RPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKP 72
           RPS +++            +   +P V+  P R   RP+RA         S  G   A P
Sbjct: 10  RPSVLIAQASGIGRCPTLNAFLSTPVVSAVPLRL--RPLRAAAGGAASPVSGDGGKRAVP 67

Query: 73  ----LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGE 128
               LL  A  NFLPLAL+ GV FG  +P+LGCLA KY LSKFSTF IFI+SGLTLR+ E
Sbjct: 68  PPAALLVFARSNFLPLALVSGVIFGLLDPTLGCLAHKYSLSKFSTFGIFIMSGLTLRTKE 127

Query: 129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALT 188
           +G A EAWP G++GL S+LLFTP+ S+ I+QVQ  P+EF+TGLA+F CMPTTLSSGV LT
Sbjct: 128 LGTALEAWPAGLYGLGSVLLFTPFLSQFIMQVQFSPREFITGLAIFCCMPTTLSSGVILT 187

Query: 189 HLAGGNSALALAMTIISNLLGIMIV 213
            L GGNSALALAMT+ SNLLGI+IV
Sbjct: 188 QLVGGNSALALAMTVASNLLGIIIV 212

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2078471	436	AT3G56160 [Arabidopsis thalian	0.687	0.353	0.675	3.8e-56
UNIPROTKB|Q0GE19	358	SLC10A7 "Sodium/bile acid cotr	0.638	0.399	0.304	1e-06
MGI|MGI:1924025	340	Slc10a7 "solute carrier family	0.642	0.423	0.284	6.6e-06
RGD|1564388	340	Slc10a7 "solute carrier family	0.566	0.373	0.308	6.6e-06
ZFIN|ZDB-GENE-040801-5	336	zgc:92251 "zgc:92251" [Danio r	0.638	0.425	0.271	1.1e-05
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.888	0.486	0.262	2.8e-05
UNIPROTKB|Q5ZJH8	333	SLC10A7 "Sodium/bile acid cotr	0.491	0.330	0.333	0.0001
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.441	0.307	0.323	0.00048
CGD|CAL0000690	411	RCH1 [Candida albicans (taxid:	0.714	0.389	0.229	0.00094
UNIPROTKB|Q59UQ7	411	CaO19.13108 "Putative uncharac	0.714	0.389	0.229	0.00094

TAIR|locus:2078471 AT3G56160 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 104/154 (67%), Positives = 126/154 (81%)

Query:    62 ASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSG 121
             AS++ L + K LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SG
Sbjct:    90 ASAQRLYFGKELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISG 149

Query:   122 LTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTL 181
             LTLR+  IGAA + WP+G+FGL SILL TP FS+LI+ VQLQP+E VTGL +F CMPTTL
Sbjct:   150 LTLRTEAIGAAVKGWPLGLFGLISILLLTPSFSRLIMLVQLQPRELVTGLGIFCCMPTTL 209

Query:   182 SSGVALTHLAGGNSALALAMTIISNLLGIMIVSY 215
             SSGVALTHLAGGN+ALALA+T+ SNLLGI+ + +
Sbjct:   210 SSGVALTHLAGGNAALALAVTVASNLLGILTIPF 243

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q0GE19 SLC10A7 "Sodium/bile acid cotransporter 7" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 46/151 (30%), Positives = 73/151 (48%)

Query:    73 LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
             L ++  D F+ + ++  +A     PS+G     L  +  +S  +   IF  SGL+L++ E
Sbjct:     4 LERMRKDWFM-VGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEE 62

Query:   129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQV-QLQP-QEFVT-GLALFSCMPTTLSSGV 185
             + +A     + +F     L F P    L LQ+  + P  E++  GL    CMP  +SS V
Sbjct:    63 LTSALVHLKLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSSAV 122

Query:   186 ALTHLAGGNSALALAMTIISNLLGIMIVSYL 216
              LT   GGN A A+  +   + LGI+I   L
Sbjct:   123 ILTKAVGGNEAAAIFNSAFGSFLGIVITPLL 153

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924025 Slc10a7 "solute carrier family 10 (sodium/bile acid cotransporter family), member 7" [Mus musculus (taxid:10090)]

 Score = 127 (49.8 bits), Expect = 6.6e-06, P = 6.6e-06
 Identities = 43/151 (28%), Positives = 68/151 (45%)

Query:    73 LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
             LL+ A   +  + ++  +      PS+G     L  +  +S  +   IF  SGL+L++ E
Sbjct:     3 LLERARKEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEE 62

Query:   129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQ---VQLQPQEFVTGLALFSCMPTTLSSGV 185
             + +A     + +F     L F P    L LQ   V    +  + GL    CMP  +SS V
Sbjct:    63 LTSALVHLRLHLFIQIFTLAFFPAAIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAV 122

Query:   186 ALTHLAGGNSALALAMTIISNLLGIMIVSYL 216
              LT   GGN A A+  +   + LGI++   L
Sbjct:   123 ILTKAVGGNEAAAIFNSAFGSFLGIVVTPVL 153

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1564388 Slc10a7 "solute carrier family 10 (sodium/bile acid cotransporter family), member 7" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 6.6e-06, P = 6.6e-06
 Identities = 42/136 (30%), Positives = 66/136 (48%)

Query:    90 VAFGFAN--PSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIF-G 142
             VA G A   PS+G     L  +  +S  +   IF  SGL+L++ E+ +A     + +F  
Sbjct:    18 VAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEELTSALVHLKLHLFIQ 77

Query:   143 LFSILLF--TPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA 200
             +F++  F  T +    +L V    +  + GL    CMP  +SS V LT   GGN A A+ 
Sbjct:    78 VFTLAFFPTTIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIF 137

Query:   201 MTIISNLLGIMIVSYL 216
              +   + LGI++   L
Sbjct:   138 NSAFGSFLGIVVTPVL 153

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040801-5 zgc:92251 "zgc:92251" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 41/151 (27%), Positives = 73/151 (48%)

Query:    73 LLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGE 128
             + ++  + F+ + ++  + F    PS+G     L  +  ++  +   IF  SGL+L++ E
Sbjct:     4 IARVRKEWFI-IGIVLVITFAKLQPSVGVKGGPLHPEITITYVAVSVIFFNSGLSLKTEE 62

Query:   129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVT-GLALFSCMPTTLSSGV 185
             + +A     +  F     L+F P    L+L+V       E++  GL   +CMP  +SS V
Sbjct:    63 LASALMHVKLHFFVQTFTLVFFPIAIWLLLKVLALTAINEWLLRGLQTVACMPPPVSSAV 122

Query:   186 ALTHLAGGNSALALAMTIISNLLGIMIVSYL 216
              LT   GGN A A+  +   + LGI++   L
Sbjct:   123 ILTKAVGGNEAAAIFNSAFGSFLGIVVTPLL 153

GO:0006810 "transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 54/206 (26%), Positives = 81/206 (39%)

Query:    16 KMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASS--KGLNWAKPL 73
             K++S  +     R   S   SP        S     +A      D   S  K L+  + +
Sbjct:    38 KLVSVSNSGISLRIQNSKPISPVFALEATSSRRVVCKAAAGVSGDLPESTPKELSQYEKI 97

Query:    74 LKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAA 133
             +++    F PL +I G   G   PSL    +   L       + +  GLTL   +     
Sbjct:    98 IELLTTLF-PLWVILGTLVGIFKPSLVTWLET-DLFTLGLGFLMLSMGLTLTFEDFRRCL 155

Query:   134 E-AWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAG 192
                W VG+ G  +  +  P    LI           TGL L SC P   +S VA T+++ 
Sbjct:   156 RNPWTVGV-GFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQASNVA-TYISK 213

Query:   193 GNSALALAMTIISNLLGIMIVSYLFK 218
             GN AL++ MT  S +  I++   L K
Sbjct:   214 GNVALSVLMTTCSTIGAIIMTPLLTK 239

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q5ZJH8 SLC10A7 "Sodium/bile acid cotransporter 7" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
 Identities = 38/114 (33%), Positives = 58/114 (50%)

Query:   100 GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159
             G L  +  ++  +  AIF  SGL+L++ E+ +A     + +F     L+F P    L LQ
Sbjct:    34 GPLKPEITITYIAVSAIFFNSGLSLKTEELTSALMHVKLHLFVQIFTLVFFPTAIWLFLQ 93

Query:   160 V-QLQP-QEFVT-GLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISN-LLG 209
             +  + P  E++  GL    CMP  +SS V LT   GGN A A+  +   + LLG
Sbjct:    94 LLSITPINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLLG 147

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 111 (44.1 bits), Expect = 0.00048, P = 0.00048
 Identities = 34/105 (32%), Positives = 55/105 (52%)

Query:   108 LSKFSTFAIFIVS---GLTLRSGEIGA-AAEAWPVGIFGLFSILLFTPYFSKLILQVQLQ 163
             L+ + T  + +V    GLTL++ +    A +  PV I G+ +  +  P  + ++  V   
Sbjct:    36 LNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPV-IIGVCAQFIIMPLVAYVLAYVMNL 94

Query:   164 PQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLL 208
             P E   GL L   +P   +S V + +LA GN AL++AMT +S LL
Sbjct:    95 PAELAAGLVLLGSVPGGTASNV-MVYLAKGNLALSIAMTSLSTLL 138

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

CGD|CAL0000690 RCH1 [Candida albicans (taxid:5476)]

 Score = 110 (43.8 bits), Expect = 0.00094, P = 0.00094
 Identities = 39/170 (22%), Positives = 70/170 (41%)

Query:    59 QDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSL----GCLADKYQLSKFSTF 114
             + F  SK   W   ++      +  + L   +A   + P      G +  +Y +   +  
Sbjct:     4 ETFRESKAYKWTSKVISFLIGQWFFIFLGVFIALAHSYPEFAKQGGTIRAEYSIGYGAVA 63

Query:   115 AIFIVSGLTLRSGEIGAAAEAWPVGIFGL-FSILLFTPYFSKLILQVQL----QPQEFVT 169
              IF++SGL++ + ++      W      L  S L+ +     +   ++     Q  +++ 
Sbjct:    64 VIFLISGLSMSTKQLLVNVANWRAHFTVLSMSFLVTSAIIYGIASGIKASHNGQIDDWLL 123

Query:   170 -GLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFK 218
              GL +    PTT+SS V +T  A GN  L L    I N+LG  I   L +
Sbjct:   124 IGLIVTHACPTTVSSNVVMTKQAHGNDILTLCEVFIGNVLGAFITPALLQ 173

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0070509 "calcium ion import" evidence=IMP

UNIPROTKB|Q59UQ7 CaO19.13108 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 110 (43.8 bits), Expect = 0.00094, P = 0.00094
 Identities = 39/170 (22%), Positives = 70/170 (41%)

Query:    59 QDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSL----GCLADKYQLSKFSTF 114
             + F  SK   W   ++      +  + L   +A   + P      G +  +Y +   +  
Sbjct:     4 ETFRESKAYKWTSKVISFLIGQWFFIFLGVFIALAHSYPEFAKQGGTIRAEYSIGYGAVA 63

Query:   115 AIFIVSGLTLRSGEIGAAAEAWPVGIFGL-FSILLFTPYFSKLILQVQL----QPQEFVT 169
              IF++SGL++ + ++      W      L  S L+ +     +   ++     Q  +++ 
Sbjct:    64 VIFLISGLSMSTKQLLVNVANWRAHFTVLSMSFLVTSAIIYGIASGIKASHNGQIDDWLL 123

Query:   170 -GLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFK 218
              GL +    PTT+SS V +T  A GN  L L    I N+LG  I   L +
Sbjct:   124 IGLIVTHACPTTVSSNVVMTKQAHGNDILTLCEVFIGNVLGAFITPALLQ 173


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       224   0.00099  112 3  11 22  0.45    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.01u 0.13s 19.14t   Elapsed:  00:00:00
  Total cpu time:  19.01u 0.13s 19.14t   Elapsed:  00:00:00
  Start:  Fri May 10 11:16:54 2013   End:  Fri May 10 11:16:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0070509 "calcium ion import" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	4e-24
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	6e-09

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 96.8 bits (242), Expect = 4e-24
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 80  NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIV---SGLTLRSGEIGAAAEAW 136
           ++  LAL+  +      P  G      +    +T+A+ ++   SGL L + E+ A    W
Sbjct: 1   DWFLLALVLAILLASLFPVPGAAGGPIRAEYVTTYAVALIFFLSGLKLSTEELLAGLRNW 60

Query: 137 PVGIFGLFSILLFTPYFSKLILQV--QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGN 194
            + +F      +  P     +  +     P E + G    + +PTT+SS VA+T  AGGN
Sbjct: 61  RLHLFVQLFTFVLFPLLGLGLSPLLPAALPPELLLGFLFLAALPTTVSSSVAMTSQAGGN 120

Query: 195 SALALAMTIISNLLGIMIV 213
            A A+    ISNLLG+ + 
Sbjct: 121 VAAAVCSASISNLLGVFLT 139

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 116 IFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFS 175
           I    GLTL   +  A  +   + + GL +  +  P  + L+ ++   P E   GL L  
Sbjct: 47  IMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLG 106

Query: 176 CMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIV 213
           C P  ++S  A+T+LA GN AL++  T +S LLG  + 
Sbjct: 107 CCPGGVAS-NAMTYLAKGNVALSVCSTSVSTLLGPFLT 143

Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
COG0385	319	Predicted Na+-dependent transporter [General funct	99.96
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	99.96
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	99.94
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.88
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	99.84
TIGR00841	286	bass bile acid transporter. Functionally character	99.8
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	99.72
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.27
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.03
PRK09903	314	putative transporter YfdV; Provisional	98.94
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	98.66
COG0679	311	Predicted permeases [General function prediction o	98.63
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	96.95
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	96.78
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.52
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	95.22
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	95.1
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	94.97
PRK10711	231	hypothetical protein; Provisional	94.68
PRK04288	232	antiholin-like protein LrgB; Provisional	94.61
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	94.47
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	94.17
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	93.91
COG2855	334	Predicted membrane protein [Function unknown]	92.54
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	92.21
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	92.18
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	91.91
PRK10669	558	putative cation:proton antiport protein; Provision	91.2
PRK03659	601	glutathione-regulated potassium-efflux system prot	90.54
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.52
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	90.39
TIGR00698	335	conserved hypothetical integral membrane protein.	90.32
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	89.82
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	88.95
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.73
PRK03562	621	glutathione-regulated potassium-efflux system prot	86.27
PRK05326	562	potassium/proton antiporter; Reviewed	84.74
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	84.54
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	83.0
PLN03159	832	cation/H(+) antiporter 15; Provisional	82.06

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=99.96  E-value=6.1e-29  Score=226.38  Aligned_cols=139  Identities=24%  Similarity=0.292  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 027347           80 NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ  159 (224)
Q Consensus        80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~  159 (224)
                      ..+++++++...++...|+...+.+.  ..++.++++||.+|++++.||+++.++|||.|+++++.||++||++++++++
T Consensus        13 ~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~   90 (319)
T COG0385          13 KIFLLWVVLLAAIAPIFPETFGWLGS--AIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAK   90 (319)
T ss_pred             HHHHHHHHHHHHHHHhccccchhhhH--HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777766544333  5688999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347          160 VQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV  221 (224)
Q Consensus       160 l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~  221 (224)
                      ++.+||++++|+++++|||+|++||+ ||++||||+++|+++|.+||++++++||+++..+.
T Consensus        91 ~~~l~~~l~~Gl~ll~~~Pggv~S~~-~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~  151 (319)
T COG0385          91 LFPLPPELAVGLLLLGCCPGGVASNA-MTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLA  151 (319)
T ss_pred             HcCCCHHHHHhHHheeeCCCchhHHH-HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999977 99999999999999999999999999999998753

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=99.96  E-value=1.9e-28  Score=222.75  Aligned_cols=142  Identities=32%  Similarity=0.541  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHHHHHHhCCccccccccc---hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 027347           80 NFLPLALIGGVAFGFANPSLGCLADKYQ---LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL  156 (224)
Q Consensus        80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~---~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~  156 (224)
                      |||+++++.++++|+.+|..|...+...   ..++.++++||++|+++++||++++++|||.|++++..+|+++|+++++
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999987655442   5667899999999999999999999999999999999999999999999


Q ss_pred             HHHhh--cCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347          157 ILQVQ--LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV  221 (224)
Q Consensus       157 l~~l~--~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~  221 (224)
                      +.++.  ..+++++.|+++++|+|||++|+|+||++||||+++|+++++++|++|++++|+++..++
T Consensus        81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l  147 (313)
T PF13593_consen   81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL  147 (313)
T ss_pred             HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence            99886  578899999999999999999999999999999999999999999999999999999886

>TIGR00832 acr3 arsenical-resistance protein

Probab=99.94  E-value=2.9e-26  Score=209.66  Aligned_cols=142  Identities=17%  Similarity=0.193  Sum_probs=125.6

Q ss_pred             HhHHHHHHHHHHHHHHHhCCccccccccc----hhh--HHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 027347           79 DNFLPLALIGGVAFGFANPSLGCLADKYQ----LSK--FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY  152 (224)
Q Consensus        79 ~~~~~l~ii~~vllg~~~P~~g~~~~~~~----~~~--~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pl  152 (224)
                      ..|+.+++++++++|+..|..+.+.+...    ..+  +.++++||.+|+++++||+++++||||.++.+++.||+++|+
T Consensus         9 ~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl   88 (328)
T TIGR00832         9 TLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF   88 (328)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence            46777888889999999998876554321    112  235568999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-cCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347          153 FSKLILQVQ-LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV  221 (224)
Q Consensus       153 la~~l~~l~-~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~  221 (224)
                      ++|++++++ .+++++++|+++++|||||++||+ ||++||||+++|+++|++|++++++++|+++..+.
T Consensus        89 la~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v-~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~  157 (328)
T TIGR00832        89 LMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFV-WNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLL  157 (328)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999975 889999999999999999998888 99999999999999999999999999999987765

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.88  E-value=5.6e-22  Score=167.13  Aligned_cols=111  Identities=24%  Similarity=0.339  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHhHhcccchhhHHHHHHH
Q 027347          111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTH  189 (224)
Q Consensus       111 ~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~-~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~  189 (224)
                      ..++++||.+|+++++||+++..||||..+.+++.||+++|+++|+++ .++.++++++.|+++++||||+..|++ ||+
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~-~t~   80 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNV-FTY   80 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHH-HHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHH-HHH
Confidence            568899999999999999999999999999999999999999999999 678899999999999999999999999 999


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347          190 LAGGNSALALAMTIISNLLGIMIVSYLFKNDVM  222 (224)
Q Consensus       190 lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~~  222 (224)
                      ++|||+++|+.+|.++++++++++|+++..+..
T Consensus        81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~  113 (187)
T PF01758_consen   81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG  113 (187)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988754

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=99.84  E-value=2.8e-21  Score=168.14  Aligned_cols=158  Identities=29%  Similarity=0.405  Sum_probs=136.5

Q ss_pred             ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcc----ccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhH
Q 027347           64 SKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLG----CLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVG  139 (224)
Q Consensus        64 ~~~~~~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~g----~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~  139 (224)
                      ..+.-|.+|+.++.+++||...+.+++..+.+.|+.|    .++++++++++.++.||+.+|++++.|++.++.++||.|
T Consensus         7 ~~r~i~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~Lh   86 (287)
T KOG4821|consen    7 LIRKIWAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLH   86 (287)
T ss_pred             chHHHHHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchH
Confidence            4456799999999999999999999999999999774    467888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc---CCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHH
Q 027347          140 IFGLFSILLFTPYFSKLILQVQL---QPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA-MTIISNLLGIMIVSY  215 (224)
Q Consensus       140 l~~l~~~fvl~Plla~~l~~l~~---~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~-lt~ls~Ll~~~itPl  215 (224)
                      +++++..+.++|-..|++.....   .++++..|+.+++|||++++|+|++|+.+|||++.+.. ....+++.+.+++|-
T Consensus        87 LFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~  166 (287)
T KOG4821|consen   87 LFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPA  166 (287)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999887643   44589999999999999999999999999999855543 344566667777776


Q ss_pred             HHHHhh
Q 027347          216 LFKNDV  221 (224)
Q Consensus       216 l~~~~~  221 (224)
                      +....+
T Consensus       167 l~q~LL  172 (287)
T KOG4821|consen  167 LVQMLL  172 (287)
T ss_pred             HHHHHH
Confidence            665443

>TIGR00841 bass bile acid transporter

Probab=99.80  E-value=6.8e-19  Score=157.92  Aligned_cols=110  Identities=26%  Similarity=0.317  Sum_probs=106.0

Q ss_pred             HHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhc
Q 027347          112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLA  191 (224)
Q Consensus       112 ~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lA  191 (224)
                      .++++||.+|++++.+|+++..+|||.+..+++.|++++|+++|++++++.++++++.|+++++||||+..|++ ||+++
T Consensus        13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v-~t~~~   91 (286)
T TIGR00841        13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNV-FTYLL   91 (286)
T ss_pred             HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHH-HHHHh
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999988 99999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347          192 GGNSALALAMTIISNLLGIMIVSYLFKNDVM  222 (224)
Q Consensus       192 gGNvalAl~lt~ls~Ll~~~itPll~~~~~~  222 (224)
                      |||.++++.++++||+++++++|+++..+..
T Consensus        92 ~gn~~la~~~~~~stlls~vt~Pl~l~~~~~  122 (286)
T TIGR00841        92 KGDMALSISMTTCSTLLALGMMPLLLYIYAK  122 (286)
T ss_pred             CCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988764

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=99.72  E-value=3e-16  Score=143.84  Aligned_cols=142  Identities=20%  Similarity=0.238  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHhCCccccccccc---h-hhHHH--HHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 027347           80 NFLPLALIGGVAFGFANPSLGCLADKYQ---L-SKFST--FAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYF  153 (224)
Q Consensus        80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~---~-~~~~i--alIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Pll  153 (224)
                      -|..+++.+|+.+|..+|+..+..+..+   + .+.++  .+||.=+-++++.||++++.+++|..++.++.|+++.|++
T Consensus        18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~l   97 (342)
T COG0798          18 LWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLL   97 (342)
T ss_pred             HHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            4566899999999999998665555332   1 23333  4455556799999999999999999999999999999999


Q ss_pred             HHHHHHhh-cCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347          154 SKLILQVQ-LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDVM  222 (224)
Q Consensus       154 a~~l~~l~-~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~~  222 (224)
                      .|++++++ .+.|++.+|+++++..||+ ++.++|++++|||-.+++..++++.++++++.|.+...|+.
T Consensus        98 m~~la~~fl~~~pey~~GlILlglApC~-aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~  166 (342)
T COG0798          98 MFALAWFFLPDEPEYRAGLILLGLAPCI-AMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLG  166 (342)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhhhH-HHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999985 5667999999999999999 68888999999999999999999999999999999988875

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.27  E-value=1.1e-11  Score=115.70  Aligned_cols=139  Identities=18%  Similarity=0.203  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHhC-CccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 027347           81 FLPLALIGGVAFGFANP-SLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ  159 (224)
Q Consensus        81 ~~~l~ii~~vllg~~~P-~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~  159 (224)
                      .+++.....-.+....| ....+... .+.+......|+..|++++.+++++..+||....+|++.||+++|+.+|.+++
T Consensus        87 ~lp~~~~~~~v~~~~~~~~~~t~l~~-~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~  165 (371)
T KOG2718|consen   87 ILPLLVFLLKVLFLLDPLLAFTWLVT-GCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSK  165 (371)
T ss_pred             chhHHHHHHHHHhhcCCcccceEEEe-CccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhh
Confidence            44555555555555555 22211111 13446678899999999999999999999999999999999999999999998


Q ss_pred             hhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347          160 VQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKND  220 (224)
Q Consensus       160 l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~  220 (224)
                      .+..|...+.|++++.|++++..++.+++..-+||+++++.+|.+||+.+++++|++-..+
T Consensus       166 ~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l  226 (371)
T KOG2718|consen  166 VLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILL  226 (371)
T ss_pred             HhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888888867888777777777788845555599999999999999999999999987654

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.03  E-value=8.2e-09  Score=93.36  Aligned_cols=143  Identities=17%  Similarity=0.106  Sum_probs=114.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHh-CCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHH
Q 027347           72 PLLKIAADNFLPLALIGGVAFGFAN-PSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLF  149 (224)
Q Consensus        72 ~l~~fl~~~~~~l~ii~~vllg~~~-P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl  149 (224)
                      .+.+.+++..+ ++.++|+++...- +-++...+..+ +......+.++..|++++.++.+   +++|......+..+++
T Consensus       175 ~~~~~~~nP~i-ia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil  250 (321)
T TIGR00946       175 VWKKLIKFPPL-WAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLV  250 (321)
T ss_pred             HHHHHHhCCCh-HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHH
Confidence            44555554444 8888888877653 21222233333 56667888999999999877764   3567888889999999


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027347          150 TPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKN  219 (224)
Q Consensus       150 ~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~  219 (224)
                      .|++++++..++..+++...-.++.+++|++..+.+ +++..|+|...+.....+||+++.+++|+++..
T Consensus       251 ~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i-~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l  319 (321)
T TIGR00946       251 QPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAV-LATEYEVDVELASTAVTLSTVLSLISLPLFIIL  319 (321)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888888888889999999999987666 999999999999999999999999999999875

>PRK09903 putative transporter YfdV; Provisional

Probab=98.94  E-value=2.2e-08  Score=90.63  Aligned_cols=144  Identities=13%  Similarity=0.094  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHH-hCCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHH
Q 027347           70 AKPLLKIAADNFLPLALIGGVAFGFA-NPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSIL  147 (224)
Q Consensus        70 ~~~l~~fl~~~~~~l~ii~~vllg~~-~P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~f  147 (224)
                      .+.+++.+++..+ ++.++|+++... .+-++...+..+ +......+.++..|.++...+++    ..+....+.+..+
T Consensus       164 ~~~l~~~~~nP~i-ia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~----~~~~~~~~~~~Kl  238 (314)
T PRK09903        164 LSALISAAKEPVV-WAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE----FSAEIAYNTFLKL  238 (314)
T ss_pred             HHHHHHHHhchHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccHHHHHHHHHHH
Confidence            3566677655555 888888776654 122222222222 45566788889999988776553    2244567778899


Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027347          148 LFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKN  219 (224)
Q Consensus       148 vl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~  219 (224)
                      ++.|++.+++......+++...-.++.+++|++..+.+ +....|||..++.....+||+++.+++|+++..
T Consensus       239 i~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i-~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l  309 (314)
T PRK09903        239 ILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII-IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV  309 (314)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888777788888888999999999987666 999999999999999999999999999999875

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=98.66  E-value=3.1e-07  Score=84.10  Aligned_cols=143  Identities=24%  Similarity=0.312  Sum_probs=109.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhCCcc----cc-ccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHH
Q 027347           72 PLLKIAADNFLPLALIGGVAFGFANPSLG----CL-ADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFS  145 (224)
Q Consensus        72 ~l~~fl~~~~~~l~ii~~vllg~~~P~~g----~~-~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~  145 (224)
                      .+.+.+++.-+ ++.++|++++..-+...    .. .+..+ +....+.+.+|..|..+..+..+. ..+++......+.
T Consensus       237 ~~~~~~~nP~~-~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~-~~~~~~~~~~~~~  314 (385)
T PF03547_consen  237 SILKLFKNPPL-IAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKS-ALGWKPSIIAVLV  314 (385)
T ss_pred             HHHHHHhCcHH-HHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCccc-chhhHHHHHHHHH
Confidence            33444544444 88888998888754432    11 11111 445567889999998887654432 2345555667899


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027347          146 ILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLF  217 (224)
Q Consensus       146 ~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~  217 (224)
                      -++++|++++++..++..+++....+++.+|+|+++.+.+ ++...+.|...+-.....+++++++.+|+|+
T Consensus       315 rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~-~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  315 RLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFV-IASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999988888888888999999999987777 9999999999999999999999999999984

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>COG0679 Predicted permeases [General function prediction only]

Probab=98.63  E-value=1.3e-06  Score=79.47  Aligned_cols=146  Identities=24%  Similarity=0.315  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHH---hCCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHH
Q 027347           69 WAKPLLKIAADNFLPLALIGGVAFGFA---NPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLF  144 (224)
Q Consensus        69 ~~~~l~~fl~~~~~~l~ii~~vllg~~---~P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~  144 (224)
                      +.+.+++-+++..+ ++.++|.++...   .|+.  ..+..+ .......+.++..|++++.++.++  .+++.......
T Consensus       158 ~~~~~~~~~~nP~i-~a~i~g~~~~~~~i~lP~~--~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~  232 (311)
T COG0679         158 LLSVLKKLLTNPLI-IALILGLLLNLLGISLPAP--LDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALS  232 (311)
T ss_pred             HHHHHHHHHhCcHH-HHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHH
Confidence            33444555555555 888888887753   2321  111111 455667889999999999844443  34566667777


Q ss_pred             HHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347          145 SILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKND  220 (224)
Q Consensus       145 ~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~  220 (224)
                      ..+++.|+++++++++++.++....-+++..++|++...-+ ++...++|..++.....+|++++.+.+|.+....
T Consensus       233 ~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v-~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l  307 (311)
T COG0679         233 LKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYV-LARQYGGDPRLAASTILLSTLLSLLTLPLLILLL  307 (311)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999998888877777888889999986666 9999999999999999999999999999987654

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=96.95  E-value=0.11  Score=42.86  Aligned_cols=134  Identities=17%  Similarity=0.226  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 027347           80 NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ  159 (224)
Q Consensus        80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~  159 (224)
                      .|+.-.++.+..+......... .+. ......-.++-...|++++.+++++..+.+...+...+...++.=..++.+.+
T Consensus        22 ~~llG~mi~~~~~~~~~~~~~~-~P~-~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~   99 (156)
T TIGR03082        22 AWLLGPLLAGAVLSLAGGLEIT-LPP-WLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLAR   99 (156)
T ss_pred             HHHHHHHHHHHHHHhcCCccCC-CCH-HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555543211110 111 12333444455678999999999999888888877777777776677888888


Q ss_pred             hhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027347          160 VQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKN  219 (224)
Q Consensus       160 l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~  219 (224)
                      ....|..-+    +++++|+|.+--.+...-.|+|.+.-...=.+=-++-.+..|++..+
T Consensus       100 ~~~~~~~ta----~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       100 LTGVDPLTA----FLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HHCCCHHHH----HHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            776665332    58899999876665667778999887777777777777888887654

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=96.78  E-value=0.083  Score=48.62  Aligned_cols=135  Identities=19%  Similarity=0.203  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 027347           81 FLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQV  160 (224)
Q Consensus        81 ~~~l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l  160 (224)
                      |+.-.++...+.+...+..-..-++  .......++=...|.+++++.+.+....+...++..+...+..-..+|.+.+.
T Consensus         1 WllG~~ia~~~~~~~~~~~~~~p~~--~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~   78 (318)
T PF05145_consen    1 WLLGPMIAVIIAALFGPLPLRVPRR--LRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRI   78 (318)
T ss_pred             CchHHHHHHHHHHHhCCCccCCCHH--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666664333221111  34455555666789999999999999999999988888888888889999888


Q ss_pred             hcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347          161 QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV  221 (224)
Q Consensus       161 ~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~  221 (224)
                      ...|..-    .+.+++|++.+.-+++..-.|+|...-...=.+=-++-++.+|+......
T Consensus        79 ~~~d~~T----A~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~  135 (318)
T PF05145_consen   79 SGLDRAT----AFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLLG  135 (318)
T ss_pred             cCCChhH----HHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7666543    36899999998888899999999998888888888888899999887654

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=95.52  E-value=1.3  Score=40.74  Aligned_cols=103  Identities=14%  Similarity=0.168  Sum_probs=80.7

Q ss_pred             HHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCH
Q 027347          116 IFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNS  195 (224)
Q Consensus       116 Iff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNv  195 (224)
                      +=...|++++.+++++..|.....+...+...+..=+.++.+.++...|.    .-.++++.|+|++.-.....-.|.|+
T Consensus       213 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~A~~l~~d~  288 (318)
T PF05145_consen  213 IGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALIALALGADV  288 (318)
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHHHHHcCCCh
Confidence            33467899999999998777777777766666777777888888776664    34578999999876665667778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027347          196 ALALAMTIISNLLGIMIVSYLFKNDVM  222 (224)
Q Consensus       196 alAl~lt~ls~Ll~~~itPll~~~~~~  222 (224)
                      +.-...=.+=.+.-.++.|++.+.+..
T Consensus       289 ~~V~~~q~~Rl~~v~~~~p~~~r~~~r  315 (318)
T PF05145_consen  289 AFVAAHQVVRLLFVLLLAPFIARWLRR  315 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888888888999999887643

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=95.22  E-value=0.33  Score=42.68  Aligned_cols=90  Identities=19%  Similarity=0.310  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHH
Q 027347          126 SGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTI  203 (224)
Q Consensus       126 ~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~  203 (224)
                      .|+.....+|++.++.++...-++.-+..+.++++++.+++....++     |-.++..++  .+..-|||.+++...+.
T Consensus        67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSVTtpiAi~is~~iGG~~sLta~~Vv  141 (215)
T PF04172_consen   67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLA-----PKSVTTPIAIEISEQIGGIPSLTAVFVV  141 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH-----HHHhhHHHHHHHHHHhCChHHHHHHHHH
Confidence            45666667789999999888877777888888999999988776654     433333333  58999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 027347          204 ISNLLGIMIVSYLFKND  220 (224)
Q Consensus       204 ls~Ll~~~itPll~~~~  220 (224)
                      ++-++|.++-|.+++.+
T Consensus       142 itGi~Ga~~g~~llk~~  158 (215)
T PF04172_consen  142 ITGILGAVLGPPLLKLL  158 (215)
T ss_pred             HHhhHHHHhHHHHHhHc
Confidence            99999999999998764

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=95.10  E-value=0.37  Score=42.78  Aligned_cols=90  Identities=16%  Similarity=0.280  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHH
Q 027347          126 SGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTI  203 (224)
Q Consensus       126 ~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~  203 (224)
                      .|+.+..-+|++.++.++..--++--..++.++++++.+++....+     .|-.++..++  .+..-|||.+++...+.
T Consensus        77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl-----~pkSvTtpiAm~vs~~iGG~~sLta~~vv  151 (226)
T TIGR00659        77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASL-----LPKSVTTPIAMHVSEMIGGIPAVTAVFVI  151 (226)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHh-----hhHHhhHHHHHHHHHHhCChHHHHHHHHH
Confidence            4555555668888888887766666677888999998988877644     3444444333  48999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 027347          204 ISNLLGIMIVSYLFKND  220 (224)
Q Consensus       204 ls~Ll~~~itPll~~~~  220 (224)
                      ++-++|..+-|.+++.+
T Consensus       152 itGi~Ga~~g~~ll~~~  168 (226)
T TIGR00659       152 LTGLLGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            99999999999988764

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=94.97  E-value=1.8  Score=40.83  Aligned_cols=104  Identities=17%  Similarity=0.272  Sum_probs=85.7

Q ss_pred             HHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCC
Q 027347          114 FAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG  193 (224)
Q Consensus       114 alIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgG  193 (224)
                      .++=...|.+++.+++....++|-..++..+......=+.+|.+.+....|.+-+    +.+++|++.+.=+++.+-.|-
T Consensus        65 ~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gA  140 (352)
T COG3180          65 VILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGA  140 (352)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCC
Confidence            3344567899999999999999999999999999888899999988765554433    579999998777778888899


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347          194 NSALALAMTIISNLLGIMIVSYLFKNDV  221 (224)
Q Consensus       194 NvalAl~lt~ls~Ll~~~itPll~~~~~  221 (224)
                      |.+.-..+-.+=-+.-++..|+..+.+.
T Consensus       141 d~~~VAl~Q~lRvl~Vvl~vplv~~~~~  168 (352)
T COG3180         141 DLRLVALMQYLRVLFVVLLAPLVSRLFV  168 (352)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999888888878888888888877654

>PRK10711 hypothetical protein; Provisional

Probab=94.68  E-value=0.67  Score=41.29  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=71.2

Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHHH
Q 027347          127 GEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTII  204 (224)
Q Consensus       127 ~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~l  204 (224)
                      |+....-++++.++.+...--++--+.++.++++++.++++...+     .|-.++..++  .++.-||+.+++...+.+
T Consensus        79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl-----~pkSVTtPIAm~is~~iGG~~sLta~~Vii  153 (231)
T PRK10711         79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASI-----LPKSVTTPIAMAVGGSIGGIPAISAVCVIF  153 (231)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhhhhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            555555568899999888777777788899999999998877655     4544444443  489999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027347          205 SNLLGIMIVSYLFKND  220 (224)
Q Consensus       205 s~Ll~~~itPll~~~~  220 (224)
                      +-++|.++-|.+++.+
T Consensus       154 tGi~Ga~~g~~llk~~  169 (231)
T PRK10711        154 VGILGAVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999998764

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=94.61  E-value=0.69  Score=41.25  Aligned_cols=89  Identities=10%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHHH
Q 027347          127 GEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTII  204 (224)
Q Consensus       127 ~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~l  204 (224)
                      |++...-++|+.++.+++.--++.-+.++.++++++.++++...+     .|-.++..++  .++.-||+.+++...+.+
T Consensus        84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~psLtA~~Vii  158 (232)
T PRK04288         84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKEITSFAVIF  158 (232)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            555555568999999988877777788899999999998766554     4544444443  489999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027347          205 SNLLGIMIVSYLFKND  220 (224)
Q Consensus       205 s~Ll~~~itPll~~~~  220 (224)
                      +-++|.++-|.+++.+
T Consensus       159 tGi~Gai~g~~llk~~  174 (232)
T PRK04288        159 NAVIIYALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999998764

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=94.47  E-value=0.35  Score=44.46  Aligned_cols=136  Identities=14%  Similarity=0.067  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHH-HhCCccccccccch-hhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 027347           81 FLPLALIGGVAFGF-ANPSLGCLADKYQL-SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL  158 (224)
Q Consensus        81 ~~~l~ii~~vllg~-~~P~~g~~~~~~~~-~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~  158 (224)
                      ...+++++|++++- .......+.+-... ....+=.=-.++|.++++.|+.+.-  ++..+...+.. ..+=++++.++
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G--~~~~~~~~~~v-~~~~~~~~~lg  104 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALG--WKGLLIIIIVV-ILTFLLTYWLG  104 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhC--ccHHHHHHHHH-HHHHHHHHHHH
Confidence            34478888888884 43332222221111 2222222223579999999998853  33444333332 33335566677


Q ss_pred             -HhhcCCHHHHHHHHhHhcccchhhHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347          159 -QVQLQPQEFVTGLALFSCMPTTLSSGVALT---HLAGGNSALALAMTIISNLLGIMIVSYLFKND  220 (224)
Q Consensus       159 -~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T---~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~  220 (224)
                       +.+..|+++. -++=.+..=||.+..++..   +--+-|++.++..+.+=+.+++++.|.+-...
T Consensus       105 ~r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l  169 (305)
T PF03601_consen  105 RRLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL  169 (305)
T ss_pred             HHHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence             8888887633 3344455556643333322   33355899999999999999999999987754

; GO: 0016021 integral to membrane

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=94.17  E-value=2.6  Score=37.02  Aligned_cols=59  Identities=20%  Similarity=0.242  Sum_probs=37.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhCCccc-ccc--ccc-hhhHHHHHHHHHhccccCHHHHHHHHh
Q 027347           73 LLKIAADNFLPLALIGGVAFGFANPSLGC-LAD--KYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAE  134 (224)
Q Consensus        73 l~~fl~~~~~~l~ii~~vllg~~~P~~g~-~~~--~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~  134 (224)
                      +.+.++-.....-++.|+++|   |.... ..+  ... +..+.+..++|..|++++.+++++..+
T Consensus        10 l~~~l~lP~~v~~il~GillG---p~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~   72 (273)
T TIGR00932        10 LSRRLGIPSVLGYLLAGVLIG---PSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRK   72 (273)
T ss_pred             HHHHhCCCHHHHHHHHHHHhC---cccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            344444555666677777777   32211 111  111 455677889999999999999988643

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=93.91  E-value=1.2  Score=41.28  Aligned_cols=132  Identities=13%  Similarity=0.009  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHhCCccc-cccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 027347           84 LALIGGVAFGFANPSLGC-LADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ  161 (224)
Q Consensus        84 l~ii~~vllg~~~P~~g~-~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~  161 (224)
                      +.+++.+++|+++-+... ..+.+. -.++.+.+.-|.+|.+++++|+.++  -++.++++++.. +++=++.+.+.+++
T Consensus       167 v~lilpILiGmilGNld~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~--G~~GIlL~v~vv-~~t~~~~~~i~rll  243 (312)
T PRK12460        167 VAALLPLVLGMILGNLDPDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQA--GLAGILLGVLVT-IVTGFFNIFADRLV  243 (312)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHh--ChHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence            445555666665533211 112221 2233455556789999999999874  244555554433 33446677777877


Q ss_pred             cCCHHHHHHHHhH---hcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347          162 LQPQEFVTGLALF---SCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKND  220 (224)
Q Consensus       162 ~~~~~l~~Glll~---~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~  220 (224)
                      ..++..  |+.+-   ++.=||-+.-.+..-..+..++.|....+.+.+...+++|++..++
T Consensus       244 g~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~  303 (312)
T PRK12460        244 GGTGIA--GAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWV  303 (312)
T ss_pred             CCChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666543  33333   2222222222223344566788888888888888888888888775

>COG2855 Predicted membrane protein [Function unknown]

Probab=92.54  E-value=3  Score=39.15  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhCCccccccccc-hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 027347           82 LPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQV  160 (224)
Q Consensus        82 ~~l~ii~~vllg~~~P~~g~~~~~~~-~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l  160 (224)
                      +.+++++|++++.+........+-.+ ..+..+=+=-.++|.+++..|+.+.--+  .+. .-.......=++++.++++
T Consensus        40 l~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~--~v~-~~~~~l~~t~~~~~~lg~~  116 (334)
T COG2855          40 LTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGS--GVL-IIAITLSSTFLFAYFLGKL  116 (334)
T ss_pred             HHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCcc--HHH-HHHHHHHHHHHHHHHHHHH
Confidence            44777777777744322212222111 1233332222357999999999885322  221 1222223333668888888


Q ss_pred             hcCCHHHHHHHHhHhcccchhhHHHHHHH-hc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347          161 QLQPQEFVTGLALFSCMPTTLSSGVALTH-LA---GGNSALALAMTIISNLLGIMIVSYLFKND  220 (224)
Q Consensus       161 ~~~~~~l~~Glll~~~~Pttv~S~Vv~T~-lA---gGNvalAl~lt~ls~Ll~~~itPll~~~~  220 (224)
                      +++|..++ =++=++|.=||. |.++-+. ..   +=|++.|+..+++=+.+++++.|.+-.+.
T Consensus       117 lgld~~~a-~Lia~GssICGa-sAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l  178 (334)
T COG2855         117 LGLDKKLA-LLIAAGSSICGA-SAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL  178 (334)
T ss_pred             hCCCHHHH-HHHHccchhhHH-HHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence            88887654 244466777784 5553332 22   34789999999999999999999886653

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=92.21  E-value=2.9  Score=37.32  Aligned_cols=90  Identities=18%  Similarity=0.265  Sum_probs=73.2

Q ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHH--HHHhcCCCHHHHHHHHH
Q 027347          126 SGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA--LTHLAGGNSALALAMTI  203 (224)
Q Consensus       126 ~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv--~T~lAgGNvalAl~lt~  203 (224)
                      .|++...-|+|+.++.+.+.--++-=..+++++++++.++++..     +.+|-+++..++  .++.-||-.+++...+.
T Consensus        80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi  154 (230)
T COG1346          80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPALTAVFVI  154 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchHHHHHHHH
Confidence            46677777899999998877666655778899999999987654     456766666555  48899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 027347          204 ISNLLGIMIVSYLFKND  220 (224)
Q Consensus       204 ls~Ll~~~itPll~~~~  220 (224)
                      ++-++|..+-|.+++.+
T Consensus       155 ~tGi~Gavlg~~llk~~  171 (230)
T COG1346         155 LTGILGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998765

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=92.18  E-value=3.3  Score=38.92  Aligned_cols=143  Identities=15%  Similarity=0.211  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHhCCc---cccccccc--hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHH
Q 027347           68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSL---GCLADKYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFG  142 (224)
Q Consensus        68 ~~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~---g~~~~~~~--~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~  142 (224)
                      +|+++-.+++||.++|-.++.|.+.+.+.+..   +...-+++  +....+...|-..|++-+.+++++.-++--..+..
T Consensus        20 ~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~   99 (368)
T PF03616_consen   20 KFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLI   99 (368)
T ss_pred             HHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHH
Confidence            36677788999999999999998876653321   22212222  23333333444788998998888765433322222


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhH-hcccchh--hHHHH--HHHh--cCCCHHHHHHHHHHHHHHHHHH
Q 027347          143 LFSILLFTPYFSKLILQVQLQPQEFVTGLALF-SCMPTTL--SSGVA--LTHL--AGGNSALALAMTIISNLLGIMI  212 (224)
Q Consensus       143 l~~~fvl~Plla~~l~~l~~~~~~l~~Glll~-~~~Pttv--~S~Vv--~T~l--AgGNvalAl~lt~ls~Ll~~~i  212 (224)
                      .....++==+++.++++++..+|.  .|++.- ...=+|-  +.+..  +...  ..|-..+++..++++.+.|.++
T Consensus       100 ~~~~~~~Q~~vG~~la~l~gl~p~--~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~li  174 (368)
T PF03616_consen  100 AIILAFLQNIVGLGLAKLLGLDPL--FGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLI  174 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCch--HHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence            111122222456677777777764  354321 1222222  22222  2222  1345577888888888877555

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=91.91  E-value=4.2  Score=38.81  Aligned_cols=141  Identities=14%  Similarity=0.104  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHH---hCCccccccccc--hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHH-
Q 027347           68 NWAKPLLKIAADNFLPLALIGGVAFGFA---NPSLGCLADKYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIF-  141 (224)
Q Consensus        68 ~~~~~l~~fl~~~~~~l~ii~~vllg~~---~P~~g~~~~~~~--~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~-  141 (224)
                      +|+++-.++++|..+|-.++.|.+.+..   .|..+...-+++  +....+...|-..|++-+.+++++.-+.-...+. 
T Consensus        20 ~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~   99 (398)
T TIGR00210        20 RYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLAT   99 (398)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHH
Confidence            4677778899999999999999886432   244432222222  3444444445578888888887764322111111 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh-HhcccchhhHHHHHHHhc------CCCHHHHHHHHHHHHHHHHH
Q 027347          142 ---GLFSILLFTPYFSKLILQVQLQPQEFVTGLAL-FSCMPTTLSSGVALTHLA------GGNSALALAMTIISNLLGIM  211 (224)
Q Consensus       142 ---~l~~~fvl~Plla~~l~~l~~~~~~l~~Glll-~~~~Pttv~S~Vv~T~lA------gGNvalAl~lt~ls~Ll~~~  211 (224)
                         ..+.|+    .++.++++++..+|.  .|++. -...-+|-..+.+|....      .|...+++..++++.+.|.+
T Consensus       100 ~~~l~~~Qn----~vGv~la~~~gl~P~--~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~l  173 (398)
T TIGR00210       100 AVGFLVIQN----AVGIGMASLLGQAPL--MGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGI  173 (398)
T ss_pred             HHHHHHHHH----HHHHHHHHHcCCChH--HHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence               112333    446666677777763  35552 344444444444443333      34567777888888887776


Q ss_pred             HHH
Q 027347          212 IVS  214 (224)
Q Consensus       212 itP  214 (224)
                      +==
T Consensus       174 iGg  176 (398)
T TIGR00210       174 IGG  176 (398)
T ss_pred             HHH
Confidence            643

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.20  E-value=5.3  Score=39.09  Aligned_cols=62  Identities=16%  Similarity=0.215  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHH
Q 027347          108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVTGLA  172 (224)
Q Consensus       108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~--~~l~~Gll  172 (224)
                      +..+.+.+++|..|++++.+++++.   ++..+.+...++++.-+++++++..+..+  ..+..|..
T Consensus        60 la~lGli~llF~~Gle~d~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~  123 (558)
T PRK10669         60 LAELGVILLMFGVGLHFSLKDLMAV---KSIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLC  123 (558)
T ss_pred             HHHHHHHHHHHHhHhcCCHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            4556777889999999999999764   34444455556555555666666555433  23444443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=90.54  E-value=6.4  Score=39.19  Aligned_cols=64  Identities=14%  Similarity=0.090  Sum_probs=36.7

Q ss_pred             hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHhH
Q 027347          108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALF  174 (224)
Q Consensus       108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~--~l~~Glll~  174 (224)
                      +..+.+.+++|..|++++++++++.   +|..+..-..|.++.-++.++++..++.+.  .+.+|+.+.
T Consensus        59 laelGvv~LLF~iGLel~~~~l~~~---~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la  124 (601)
T PRK03659         59 FSELGVVFLMFIIGLELNPSKLWQL---RRSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA  124 (601)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3456778899999999999999874   223333333344443334444444443332  355665444

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.52  E-value=7.1  Score=39.10  Aligned_cols=67  Identities=15%  Similarity=0.074  Sum_probs=41.2

Q ss_pred             hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHhHhcc
Q 027347          108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVTGLALFSCM  177 (224)
Q Consensus       108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~--~~l~~Glll~~~~  177 (224)
                      +..+.+.+++|..|++++++++++.   +|..+..-..|.++.-+++++++..++.+  ..+.+|..+..+.
T Consensus        59 laelGvv~LlF~iGLEl~~~~l~~~---~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS  127 (621)
T PRK03562         59 FAEFGVVLMLFVIGLELDPQRLWKL---RRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS  127 (621)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            3456777788999999999999874   33333333345444444555555555443  3466677665554

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=90.39  E-value=3.3  Score=38.50  Aligned_cols=130  Identities=15%  Similarity=0.144  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHHHhCCccccccccc-----hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 027347           80 NFLPLALIGGVAFGFANPSLGCLADKYQ-----LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFS  154 (224)
Q Consensus        80 ~~~~l~ii~~vllg~~~P~~g~~~~~~~-----~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla  154 (224)
                      -.+.+=++++.++--++|+.....+.++     -....+++.+|++|.+++.|+..+++||--.++   +..+++-=+++
T Consensus        13 G~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll---~~K~~~~~~lg   89 (314)
T PF03812_consen   13 GMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLL---LVKFIIGALLG   89 (314)
T ss_pred             ceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHH---HHHHHHHHHHH
Confidence            3455777888888889998865334333     133467888899999999999999988765554   44555555778


Q ss_pred             HHHHHhhcCCH---HHHH---HHHhHhcccchhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHH
Q 027347          155 KLILQVQLQPQ---EFVT---GLALFSCMPTTLSSGVALTHLAG--GNSALALAMTIISNLLGIMIVS  214 (224)
Q Consensus       155 ~~l~~l~~~~~---~l~~---Glll~~~~Pttv~S~Vv~T~lAg--GNvalAl~lt~ls~Ll~~~itP  214 (224)
                      +++.+++..+.   ....   -+.+++++-.+-. ++ +..+.+  ||..=.-....+|..-+|+++=
T Consensus        90 l~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~Ng-gL-Y~aL~~~yGd~~D~gA~~i~sl~~GPf~tM  155 (314)
T PF03812_consen   90 LLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNG-GL-YLALMGQYGDEEDVGAFSILSLNDGPFFTM  155 (314)
T ss_pred             HHHHHHcCccccccccccchHHHHHHHHHhcCCH-HH-HHHHHHHhCCHHHhHHHHHHHhhhhHHHHH
Confidence            88888765542   1122   2345555544432 22 333332  5554444555555556666553

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR00698 conserved hypothetical integral membrane protein

Probab=90.32  E-value=6.2  Score=36.87  Aligned_cols=99  Identities=11%  Similarity=0.068  Sum_probs=60.3

Q ss_pred             HHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHhHhcccchhhHHHHHHHhc---CC
Q 027347          118 IVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTHLA---GG  193 (224)
Q Consensus       118 f~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~-~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lA---gG  193 (224)
                      .++|.+++++|+.+.-  ++.+......... +=++++.++ +.+..|+++. -++=.++.=||.+..++.....   +-
T Consensus        73 VLlG~~l~~~~i~~~G--~~~l~~~~~~v~~-~~~~~~~~g~k~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~  148 (335)
T TIGR00698        73 TLYGFRLTFPYIADVG--PNEIVADTLILTS-TFFLTVFLGSSRLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKE  148 (335)
T ss_pred             HHHCccccHHHHHHhh--HHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCcc
Confidence            3579999999997753  3333332222222 223345555 6777776533 2333444555643333333333   44


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347          194 NSALALAMTIISNLLGIMIVSYLFKND  220 (224)
Q Consensus       194 NvalAl~lt~ls~Ll~~~itPll~~~~  220 (224)
                      |++.++..+.+-+.+++++.|++-.++
T Consensus       149 ~~a~ava~V~lfgt~am~l~P~l~~~l  175 (335)
T TIGR00698       149 KVSVAIAIVVIFGTTGIFLYPSIYHYA  175 (335)
T ss_pred             ceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999998654

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=89.82  E-value=4.5  Score=42.12  Aligned_cols=69  Identities=13%  Similarity=0.109  Sum_probs=38.2

Q ss_pred             hhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHhHhcccchh
Q 027347          108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ--LQPQEFVTGLALFSCMPTTL  181 (224)
Q Consensus       108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~--~~~~~l~~Glll~~~~Pttv  181 (224)
                      ++-+.++++.|..|++++.+++++.   |+.....++....++=++..+++++.  .++  +..++++-+|+-.|.
T Consensus        74 IteIvL~I~LFa~Gl~L~~~~Lrr~---wrsV~rLl~~~M~lT~livAL~a~~Li~GL~--~~~ALLLGAILAPTD  144 (810)
T TIGR00844        74 ISRILLCLQVFAVSVELPRKYMLKH---WVSVTMLLVPVMTSGWLVIALFVWILVPGLN--FPASLLMGACITATD  144 (810)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhhhcCCc
Confidence            3445778899999999999999875   44433333222222222222233322  333  555666666655554

This model is specific for the fungal members of this family.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=88.95  E-value=0.12  Score=48.82  Aligned_cols=99  Identities=15%  Similarity=0.059  Sum_probs=85.9

Q ss_pred             HHHHHhccccCHHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCC
Q 027347          115 AIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL-FTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG  193 (224)
Q Consensus       115 lIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fv-l~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgG  193 (224)
                      ..++..|++++.+++++..++++.....+..++. ++|...+.....+..++....-.+...|+|.+..+|+ +..-.++
T Consensus        52 ~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~-ls~g~~~  130 (371)
T KOG2718|consen   52 FVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNM-LSFGIKL  130 (371)
T ss_pred             HhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHH-HHHhcCc
Confidence            6778889999999999988888877888888999 9999999999888777778888999999999999999 9999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q 027347          194 NSALALAMTIISNLLGIMIVS  214 (224)
Q Consensus       194 NvalAl~lt~ls~Ll~~~itP  214 (224)
                      |.....-++.-.+.+.+-++|
T Consensus       131 ~~~~~~~~~~rP~~~~lG~v~  151 (371)
T KOG2718|consen  131 DMDLFAGMIKRPTPLALGFVP  151 (371)
T ss_pred             cHHHHhhHhhCCcceeehHHH
Confidence            999999988776666655555

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.73  E-value=20  Score=35.74  Aligned_cols=102  Identities=12%  Similarity=0.040  Sum_probs=59.3

Q ss_pred             HHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHhHhcccchhhHHHHHHH
Q 027347          112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTH  189 (224)
Q Consensus       112 ~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~--~l~~Glll~~~~Pttv~S~Vv~T~  189 (224)
                      .+.+-|...|++++++.+.+   +|...+...+..++.-++..++.++.+..+.  .+..|+.+   .|.|--+-++.+.
T Consensus       270 ll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L---~~~Gef~~vl~~~  343 (601)
T PRK03659        270 LLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVL---SQGGEFAFVLFSA  343 (601)
T ss_pred             HHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH---hccccHHHHHHHH
Confidence            44445557899999987754   4666666666667778888888887776664  35566553   4445444442221


Q ss_pred             h-cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347          190 L-AGG--NSALALAMTIISNLLGIMIVSYLFKND  220 (224)
Q Consensus       190 l-AgG--NvalAl~lt~ls~Ll~~~itPll~~~~  220 (224)
                      . ..|  +......+ ....+++.+++|++...+
T Consensus       344 a~~~g~i~~~~~~~l-v~~v~ls~~~tP~l~~~~  376 (601)
T PRK03659        344 ASSQRLLQGDQMALL-LVVVTLSMMTTPLLMKLI  376 (601)
T ss_pred             HHhCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            1 122  12222222 344566667788877653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=86.27  E-value=32  Score=34.54  Aligned_cols=101  Identities=14%  Similarity=0.019  Sum_probs=59.1

Q ss_pred             HHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHhHhcccchhhHHHHHHHh
Q 027347          113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHL  190 (224)
Q Consensus       113 ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fvl~Plla~~l~~l~~~~~--~l~~Glll~~~~Pttv~S~Vv~T~l  190 (224)
                      +.+-|...|+++++..+.+   +|...+...+..++.-++..++.++.+..+.  .+..|+.+.   +.|--+-++++..
T Consensus       274 l~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~---~~Gef~~vl~~~a  347 (621)
T PRK03562        274 LGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLG---QGGEFAFVVFGAA  347 (621)
T ss_pred             HHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHh---ccccHHHHHHHHH
Confidence            3444456899999877754   4555555555667777888888888776653  467776443   3343344423221


Q ss_pred             -cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027347          191 -AGG--NSALALAMTIISNLLGIMIVSYLFKND  220 (224)
Q Consensus       191 -AgG--NvalAl~lt~ls~Ll~~~itPll~~~~  220 (224)
                       ..|  |......+.. ..+++.+++|++...+
T Consensus       348 ~~~~~i~~~~~~~lv~-~v~lS~~~tP~l~~~~  379 (621)
T PRK03562        348 QMANVLEPEWAKLLTL-AVALSMAATPLLLVLL  379 (621)
T ss_pred             HHCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence             122  2333333332 4577888888877653

>PRK05326 potassium/proton antiporter; Reviewed

Probab=84.74  E-value=22  Score=34.88  Aligned_cols=27  Identities=19%  Similarity=0.235  Sum_probs=22.4

Q ss_pred             hhhHHHHHHHHHhccccCHHHHHHHHh
Q 027347          108 LSKFSTFAIFIVSGLTLRSGEIGAAAE  134 (224)
Q Consensus       108 ~~~~~ialIff~~Gl~L~~~~l~~~l~  134 (224)
                      +..+.+.+++|..|++++.+++++..+
T Consensus        62 i~~l~L~~iLF~~Gl~~~~~~l~~~~~   88 (562)
T PRK05326         62 VGNLALAVILFDGGLRTRWSSFRPALG   88 (562)
T ss_pred             HHHHHHHHHHHcCccCCCHHHHHHHHH
Confidence            455678889999999999999997543

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=84.54  E-value=23  Score=35.17  Aligned_cols=102  Identities=19%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             HHHHHHHhccccCHH-HHHHHHhc--chhHHHHHHHHHHHHH-HHHHHHH-HhhcCCHHHHHHHHhHhcccchhhHHHHH
Q 027347          113 TFAIFIVSGLTLRSG-EIGAAAEA--WPVGIFGLFSILLFTP-YFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVAL  187 (224)
Q Consensus       113 ialIff~~Gl~L~~~-~l~~~l~~--pr~~l~~l~~~fvl~P-lla~~l~-~l~~~~~~l~~Glll~~~~Pttv~S~Vv~  187 (224)
                      +++.+|+....++-. ++.+.+++  ++..+++.+.  .+.| ++++.++ +++..++....|. +.+++=.+-+-+. .
T Consensus       452 ~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~-~aG~~t~t~~l~~-a  527 (562)
T TIGR03802       452 LGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVV--TILPLIITMLIGKYVLKYDPALLLGA-LAGARTATPALGA-V  527 (562)
T ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHH-hhccCCCcHHHHH-H
Confidence            455666554444433 36666666  3444444444  4446 5577777 5788999899898 4455444433333 3


Q ss_pred             HHhcCCCH-HHHHHHH-HHHHHHHHHHHHHHHH
Q 027347          188 THLAGGNS-ALALAMT-IISNLLGIMIVSYLFK  218 (224)
Q Consensus       188 T~lAgGNv-alAl~lt-~ls~Ll~~~itPll~~  218 (224)
                      +..++-|. +++=..+ .++|++=++..|+++.
T Consensus       528 ~~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv~  560 (562)
T TIGR03802       528 LERAGSSVPALGYTITYALGNVLLTLLGPLIVA  560 (562)
T ss_pred             HHhcCCCCcccchHhHHHHHHHHHHHHHHHHHH
Confidence            45554332 2222222 4678888888887664

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=83.00  E-value=30  Score=32.72  Aligned_cols=29  Identities=10%  Similarity=0.264  Sum_probs=23.8

Q ss_pred             hhhHHHHHHHHHhccccCHHHHHHHHhcc
Q 027347          108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAW  136 (224)
Q Consensus       108 ~~~~~ialIff~~Gl~L~~~~l~~~l~~p  136 (224)
                      .....+...||..|++.+.+++++..++.
T Consensus        61 laelGvi~LlF~~GLE~~~~~l~~~~~~~   89 (397)
T COG0475          61 LAELGVVFLLFLIGLEFDLERLKKVGRSV   89 (397)
T ss_pred             HHHHhHHHHHHHHHHCcCHHHHHHhchhh
Confidence            45667788899999999999999965554

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=82.06  E-value=26  Score=36.56  Aligned_cols=25  Identities=8%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             hhhHHHHHHHHHhccccCHHHHHHH
Q 027347          108 LSKFSTFAIFIVSGLTLRSGEIGAA  132 (224)
Q Consensus       108 ~~~~~ialIff~~Gl~L~~~~l~~~  132 (224)
                      +..+.+.+.||..|++++.+++++.
T Consensus       107 la~lGlillmFliGLE~Dl~~lr~~  131 (832)
T PLN03159        107 MANLGLLYFLFLVGVEMDISVIRRT  131 (832)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHhc
Confidence            4455677788999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	1e-05

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 78  ADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIV---SGLTLRSGEIGAAAE 134
                 L      A  F  P             +  + + I+    GLTL+  +     +
Sbjct: 16  IGKTFSLWAALFAAAAFFAPDTFK-----WAGPYIPWLLGIIMFGMGLTLKPSDFDILFK 70

Query: 135 AWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGN 194
              V I G+ +     P  +  + ++   P E   G+ L  C P   +S V +T+LA GN
Sbjct: 71  HPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV-MTYLARGN 129

Query: 195 SALALAMTIISNLLGIMIV 213
            AL++A+T +S L   ++ 
Sbjct: 130 VALSVAVTSVSTLTSPLLT 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	99.95

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=99.95  E-value=1e-26  Score=210.95  Aligned_cols=149  Identities=23%  Similarity=0.231  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHhCCccccccccchhhHHHHHHHHHhccccCHHHHHHHHhcchhHHHHHHHHHH
Q 027347           69 WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL  148 (224)
Q Consensus        69 ~~~~l~~fl~~~~~~l~ii~~vllg~~~P~~g~~~~~~~~~~~~ialIff~~Gl~L~~~~l~~~l~~pr~~l~~l~~~fv  148 (224)
                      +++|+.+|+ ++++++++++++++|+++|+.+...+.  ..+++++++||.+|++++.+|+++.++|||.++.+++.||+
T Consensus         8 ~l~~~~~~l-~~~~~l~i~~~~~lg~~~P~~~~~~~~--~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v   84 (332)
T 3zux_A            8 ILSKISSFI-GKTFSLWAALFAAAAFFAPDTFKWAGP--YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA   84 (332)
T ss_dssp             HHHHHHHHH-HHTHHHHHHHHHHHHHHCGGGTGGGGG--GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHcchhhhhhHH--HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence            568889999 578889999999999999998765543  45678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHhHhcccchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027347          149 FTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVSYLFKNDV  221 (224)
Q Consensus       149 l~Plla~~l~~l~~~~~~l~~Glll~~~~Pttv~S~Vv~T~lAgGNvalAl~lt~ls~Ll~~~itPll~~~~~  221 (224)
                      ++|+++|++++++.++++++.|+++++||||+.+|++ ||+++|||+++++.++++||+++++++|+++..+.
T Consensus        85 i~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v-~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~  156 (332)
T 3zux_A           85 IMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA  156 (332)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999998 99999999999999999999999999999998764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00