Citrus Sinensis ID: 027362

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHccHEEcHcHcccccccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHEEEHHHHHHcccc
Coil and Loop (DISEMBL)
messasgralphhrepfdwltrpplnlittTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSrlchiprlkdqwcenafrfngvnffrftndafasslsffngggtrknsghegtshldtartnlfIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYslnsigptmekicgprrylGVYFSSAIASNNS
Flexible Loop (DISEMBL)
messasgralphhrepfdwltrpPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS
Low Complexity Region (SEG)
MESSASGRALPHHREPFDWLTRPPLNLITTTAKhslsvslsrrllhhhplharrllhssVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS
Disordered region (IsUnstruct)
****************FDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGG*************LDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA******
Disordered Region (DISOPRED)
************HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFA******************************FIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS
Disordered Region (DISEMBL)
***********HHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGT**********HLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS
Disordered Region (DISPRO)
*********LPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRK**************TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
P54493	507	Rhomboid protease GluP OS	yes	no	0.388	0.171	0.347	4e-09
Q695T9	283	Rhomboid-like protease 2	N/A	no	0.370	0.293	0.361	3e-08
P46116	281	Rhomboid protease AarA OS	yes	no	0.415	0.330	0.346	6e-06
P96617	199	Putative rhomboid proteas	no	no	0.254	0.286	0.385	3e-05
Q6IUY1	263	Rhomboid-like protease 3	N/A	no	0.486	0.414	0.285	4e-05
Q695U0	293	Rhomboid-like protease 1	N/A	no	0.406	0.310	0.329	0.0005

>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 5/92 (5%)

Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
           +T + +A+ +L++            + L+ +GAK NSLI +G++WRL T   LH  IAHL
Sbjct: 179 FTYLFIALQILMFFLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 238

Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
             N  +L S+G  +E++ G  R+L +Y ++ I
Sbjct: 239 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGI 270

Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 11/94 (11%)

Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
           V + VYIA  A           T   L+++GA I  LI  G+ WRL    FLH N+ H++
Sbjct: 68  VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127

Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
           +N +    IG TME+  G +  L VYF   + +N
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLAN 161

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 129 IGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
           I    T +LL + V  Y   FA+     +  L+L+GA I  L   G +WR   S  LH+N
Sbjct: 21  IALTLTLVLLNIAVYFYQIVFASPLDSRESNLILFGANIYQLSLTGDWWRYPISMMLHSN 80

Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
             HL  NC +L  IG   E+  G  + L +Y  S I +
Sbjct: 81  GTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGA 118

Rhomboid serine protease that catalyzes intramembrane proteolysis. Mediates quorum-sensing and the subsequent regulation of target genes via activation of the Tat protein export system. Catalyzes the proteolytic activation of tatA by removal of its N-terminal extension.

Providencia stuartii (taxid: 588)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
           +  G++WRL T   LHA   HL+ N  S+    P +E++ G  R+L VY  S I  N
Sbjct: 53  VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN 109

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNV---LVYIAQFA-------TQDKLLLWGAKIN 163
           + G   L + +  +F G  W   ++ + V   ++YI            +  L+L GA   
Sbjct: 16  NSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLSRSYEPNERTLMLLGAAYA 75

Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
                 Q WR+ T  FLHA I HL++N   +  I   +E+  G +++L  YF SAI  N
Sbjct: 76  PAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGN 134

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%)

Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
            W   ++ V +   +      + L+ +GA    LI +GQ WRL    FLHAN  H+  N 
Sbjct: 70  DWIFYIVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNV 129

Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
           +    +G T+E+  G  ++ G+YF+SAI  N
Sbjct: 130 FFQLRMGFTIERRYGLLKFTGLYFASAIYGN 160

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors. Has no detectable activity towards MIC2.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
255581209	340	KOM, putative [Ricinus communis] gi|2235	0.901	0.594	0.574	2e-63
118483595	325	unknown [Populus trichocarpa]	0.897	0.618	0.553	1e-59
224073304	325	predicted protein [Populus trichocarpa]	0.897	0.618	0.553	1e-59
225448034	330	PREDICTED: rhomboid protease gluP [Vitis	0.888	0.603	0.555	5e-56
363807582	342	uncharacterized protein LOC100805315 [Gl	0.879	0.576	0.549	1e-48
388500820	327	unknown [Medicago truncatula]	0.803	0.550	0.525	6e-48
357452411	327	Rhomboid protease gluP [Medicago truncat	0.803	0.550	0.525	6e-48
334182855	336	RHOMBOID-like protein 10 [Arabidopsis th	0.861	0.574	0.492	9e-44
30689150	343	RHOMBOID-like protein 10 [Arabidopsis th	0.852	0.556	0.492	3e-43
11761473	369	unknown protein [Arabidopsis thaliana]	0.718	0.436	0.520	9e-41

>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis] gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/214 (57%), Positives = 153/214 (71%), Gaps = 12/214 (5%)

Query: 13  HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRL 72
           H +P  W+   P+    TT  H ++ + S RL          LLHSS KKLS LCH+PRL
Sbjct: 19  HHQPIWWVQFQPVGPTPTTPFHLIATATSLRL--------SFLLHSSFKKLSHLCHVPRL 70

Query: 73  KDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLF 128
           KD WC  A +F G++F + +ND  AS+    LSFFNGG T K  G +G  + + +++N F
Sbjct: 71  KDIWCRKASQFKGIDFLQISNDVLASTTSHCLSFFNGGETGKGHGIQGAPYSEASKSNSF 130

Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
            GR+WTNILLA+N+LV+ AQFATQ KLL WGAK+NSLIDKGQFWRL TS+FLHANI HLM
Sbjct: 131 NGRKWTNILLAINILVFAAQFATQGKLLFWGAKVNSLIDKGQFWRLVTSSFLHANIGHLM 190

Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
           VN YSLNSIGPT+E + GPRR+L VYF+SAIAS+
Sbjct: 191 VNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASS 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 152/226 (67%), Gaps = 25/226 (11%)

Query: 1   MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
           M SS S    P  R P       PLNLITT A                 L    L+HSS 
Sbjct: 2   MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40

Query: 61  KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
           K +S L H+PRLKD W E A +  G++  +F+ND FAS+    L FFNGGGTRK   +EG
Sbjct: 41  KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100

Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
           + +L+T+  + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160

Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
           S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIAS+
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASS 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa] gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 152/226 (67%), Gaps = 25/226 (11%)

Query: 1   MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
           M SS S    P  R P       PLNLITT A                 L    L+HSS 
Sbjct: 2   MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40

Query: 61  KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
           K +S L H+PRLKD W E A +  G++  +F+ND FAS+    L FFNGGGTRK   +EG
Sbjct: 41  KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100

Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
           + +L+T+  + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160

Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
           S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIAS+
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASS 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera] gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 116/209 (55%), Positives = 148/209 (70%), Gaps = 10/209 (4%)

Query: 21  TRPPLNLITTTAKHSLSVSLSRRL---LHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWC 77
           +R PL+ +  T  H ++ + S RL   +H   +H    L SS K+L+ L H+P LK+ W 
Sbjct: 10  SRFPLSKVGPTPAHLITTAASLRLGHFIHRQYIHLGFFLRSSFKRLAHLAHVPGLKNIWF 69

Query: 78  ENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW 133
             A +F G++F    +D+F+++ S    FF G  TRK S  EG S+ +  R N   GRQW
Sbjct: 70  GKAIQFQGISF---PSDSFSATCSSYLYFFGGEETRKGSRDEGMSYSEAPRRNSLRGRQW 126

Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
           TNIL+A+NVLV+I Q ATQ KLLLWGAKINSLIDKGQFWRLATS+FLHANI HLMVNC+S
Sbjct: 127 TNILIAINVLVFIGQAATQGKLLLWGAKINSLIDKGQFWRLATSSFLHANIGHLMVNCFS 186

Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
           LNS+GPT+E + GPRRYL VYF+SAIAS+
Sbjct: 187 LNSVGPTVENLSGPRRYLAVYFTSAIASS 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max] gi|255640088|gb|ACU20335.1| unknown [Glycine max]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 132/204 (64%), Gaps = 7/204 (3%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL+LI T A       L RR  HH  L    LLHS  KKL+ L HI RL D+WC+  F+ 
Sbjct: 22  PLDLIATAASLHFGHLLRRRATHH--LRLGVLLHSCFKKLAPLTHIFRLNDKWCQRCFQL 79

Query: 84  NGVNFFRFTNDAFASSLSFFNGGG-----TRKNSGHEGTSHLDTARTNLFIGRQWTNILL 138
           NG+N+ + +     SS S             +  G  G S+   +  + F GR+WT ILL
Sbjct: 80  NGLNYLQLSTGDLTSSWSTSFSFFNGGGDGGRRYGKAGMSNSKMSGKDPFNGRKWTEILL 139

Query: 139 AVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198
           A NVL YIAQ ATQ KLLLWGAKINSLIDKGQ WRLATS+FLHANI HL+VNCYSLNS+G
Sbjct: 140 AANVLFYIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVG 199

Query: 199 PTMEKICGPRRYLGVYFSSAIASN 222
           PT+E   GPRR+L VYF SAIAS+
Sbjct: 200 PTVESFSGPRRFLAVYFISAIASS 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 129/196 (65%), Gaps = 16/196 (8%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL++I T A    S  +S RL  H       LL S  +KL+    + RLKD+WC+   + 
Sbjct: 18  PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68

Query: 84  NGVNFFRFTNDAFAS----SLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
            G+N+ + ++D   S    S SFFNGG    +SG+  +     +R N F GR+WTNILLA
Sbjct: 69  KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125

Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
            NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185

Query: 200 TMEKICGPRRYLGVYF 215
           T+E   GPRRYL +YF
Sbjct: 186 TVESFSGPRRYLAIYF 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula] gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 129/196 (65%), Gaps = 16/196 (8%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL++I T A    S  +S RL  H       LL S  +KL+    + RLKD+WC+   + 
Sbjct: 18  PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68

Query: 84  NGVNFFRFTNDAFAS----SLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
            G+N+ + ++D   S    S SFFNGG    +SG+  +     +R N F GR+WTNILLA
Sbjct: 69  KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125

Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
            NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185

Query: 200 TMEKICGPRRYLGVYF 215
           T+E   GPRRYL +YF
Sbjct: 186 TVESFSGPRRYLAIYF 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana] gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 130/201 (64%), Gaps = 8/201 (3%)

Query: 30  TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
           +TA    + + S    HH   H R   H  SS+KKL       R+K    +  F FNG N
Sbjct: 18  STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77

Query: 88  FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
           F +   D   S  S    FFNGG +R N   G EG+S+ +T++ N   GR+WTN+LLA+N
Sbjct: 78  FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137

Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
           V++YIAQ A+  K+L WGAKINSLI++GQ WRLAT++ LHAN  HLM+NCYSLNSIGPT 
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197

Query: 202 EKICGPRRYLGVYFSSAIASN 222
           E + GP+R+L VY +SA+AS+
Sbjct: 198 ESLGGPKRFLAVYLTSAVASS 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana] gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/199 (49%), Positives = 128/199 (64%), Gaps = 8/199 (4%)

Query: 30  TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
           +TA    + + S    HH   H R   H  SS+KKL       R+K    +  F FNG N
Sbjct: 18  STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77

Query: 88  FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
           F +   D   S  S    FFNGG +R N   G EG+S+ +T++ N   GR+WTN+LLA+N
Sbjct: 78  FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137

Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
           V++YIAQ A+  K+L WGAKINSLI++GQ WRLAT++ LHAN  HLM+NCYSLNSIGPT 
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197

Query: 202 EKICGPRRYLGVYFSSAIA 220
           E + GP+R+L VY +SA+A
Sbjct: 198 ESLGGPKRFLAVYLTSAVA 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11761473|gb|AAG40087.1|AC079374_1 unknown protein [Arabidopsis thaliana]

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 6/167 (3%)

Query: 60  VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
           ++KL       R+K    +  F FNG NF +   D   S  S    FFNGG +R N   G
Sbjct: 76  LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135

Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
            EG+S+ +T++ N   GR+WTN+LLA+NV++YIAQ A+  K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195

Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
           LAT++ LHAN  HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVA 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2032940	343	RBL10 "RHOMBOID-like protein 1	0.718	0.469	0.526	1.7e-41
UNIPROTKB|Q8EI50	528	SO_1000 "Rhomboid protease" [S	0.419	0.178	0.362	2.5e-09
TIGR_CMR|SO_1000	528	SO_1000 "rhomboid family prote	0.419	0.178	0.362	2.5e-09
UNIPROTKB|P46116	281	aarA "Rhomboid protease AarA"	0.392	0.313	0.357	2.1e-06
TAIR|locus:2159808	434	AT5G38510 [Arabidopsis thalian	0.299	0.154	0.373	5e-06
UNIPROTKB|Q5HUF9	172	CJE1083 "Rhomboid family prote	0.348	0.453	0.317	3.8e-05
TIGR_CMR|CJE_1083	172	CJE_1083 "rhomboid family prot	0.348	0.453	0.317	3.8e-05
GENEDB_PFALCIPARUM|PF11_0149	278	PF11_0149 "hypothetical protei	0.388	0.312	0.348	5.4e-05
UNIPROTKB|Q8IIM2	278	ROM1 "Rhomboid protease ROM1,	0.388	0.312	0.348	5.4e-05
UNIPROTKB|Q81VF8	190	BAS0235 "Rhomboid family prote	0.379	0.447	0.290	0.00013

TAIR|locus:2032940 RBL10 "RHOMBOID-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 88/167 (52%), Positives = 115/167 (68%)

Query:    60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
             +KKL       R+K    +  F FNG NF +   D   S  S    FFNGG +R N   G
Sbjct:    50 LKKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 109

Query:   114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
              EG+S+ +T++ N   GR+WTN+LLA+NV++YIAQ A+  K+L WGAKINSLI++GQ WR
Sbjct:   110 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 169

Query:   174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
             LAT++ LHAN  HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A
Sbjct:   170 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVA 216

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0031969 "chloroplast membrane" evidence=IDA

UNIPROTKB|Q8EI50 SO_1000 "Rhomboid protease" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 146 (56.5 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 37/102 (36%), Positives = 55/102 (53%)

Query:   129 IGRQWTNILLAVNVLVYIAQ-FATQ------DKLLL-WGAKINSLIDKGQFWRLATSAFL 180
             +G   T ILL   VL+++   FA+       + +LL WGA +  L+   Q WRL ++ FL
Sbjct:   332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391

Query:   181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
             H  + HL+ N Y L   G  +E + G  R LGVY  S +A++
Sbjct:   392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAAS 433

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1000 SO_1000 "rhomboid family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 146 (56.5 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 37/102 (36%), Positives = 55/102 (53%)

Query:   129 IGRQWTNILLAVNVLVYIAQ-FATQ------DKLLL-WGAKINSLIDKGQFWRLATSAFL 180
             +G   T ILL   VL+++   FA+       + +LL WGA +  L+   Q WRL ++ FL
Sbjct:   332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391

Query:   181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
             H  + HL+ N Y L   G  +E + G  R LGVY  S +A++
Sbjct:   392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAAS 433

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P46116 aarA "Rhomboid protease AarA" [Providencia stuartii (taxid:588)]

 Score = 127 (49.8 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 34/95 (35%), Positives = 48/95 (50%)

Query:   134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
             T  L+ +N+ VY  Q  FA+     +  L+L+GA I  L   G +WR   S  LH+N  H
Sbjct:    24 TLTLVLLNIAVYFYQIVFASPLDSRESNLILFGANIYQLSLTGDWWRYPISMMLHSNGTH 83

Query:   187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
             L  NC +L  IG   E+  G  + L +Y  S I +
Sbjct:    84 LAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGA 118

GO:0008236 "serine-type peptidase activity" evidence=IMP

TAIR|locus:2159808 AT5G38510 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:   156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
             LL+GAKIN LI  G++WRL T  FLH+ I H+ ++ ++L + GP + +  G   +  +Y 
Sbjct:   216 LLYGAKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 275

Query:   216 SSAIASN 222
                ++ N
Sbjct:   276 LGGVSGN 282

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5HUF9 CJE1083 "Rhomboid family protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 111 (44.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query:   134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
             T  L+ +N+L Y     + D   + G  +N L   G +W+L +S FLH N+ HL++N   
Sbjct:     3 TIFLIFLNILCYF--LISYDYYNILG--LNILFFNGAYWQLLSSMFLHGNLTHLILNMIV 58

Query:   194 LNSIGPTMEKICGPRRYLGVYF 215
             L   G  +E   G   ++ +YF
Sbjct:    59 LFQFGRMLETYLGALCFIFIYF 80

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1083 CJE_1083 "rhomboid family protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 111 (44.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query:   134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
             T  L+ +N+L Y     + D   + G  +N L   G +W+L +S FLH N+ HL++N   
Sbjct:     3 TIFLIFLNILCYF--LISYDYYNILG--LNILFFNGAYWQLLSSMFLHGNLTHLILNMIV 58

Query:   194 LNSIGPTMEKICGPRRYLGVYF 215
             L   G  +E   G   ++ +YF
Sbjct:    59 LFQFGRMLETYLGALCFIFIYF 80

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GENEDB_PFALCIPARUM|PF11_0149 PF11_0149 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 116 (45.9 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query:   136 ILLAVNVLVYIAQFAT-QDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
             I+  ++V +  A F T  D LL+  GA + S I +G+  RL    FLHANI H + N + 
Sbjct:    65 IVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHAIFNIFF 124

Query:   194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
                +G T+EK  G  + + +YF + +  N
Sbjct:   125 QLRMGFTLEKNYGIMKIIILYFVTGMYGN 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IIM2 ROM1 "Rhomboid protease ROM1, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 116 (45.9 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query:   136 ILLAVNVLVYIAQFAT-QDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
             I+  ++V +  A F T  D LL+  GA + S I +G+  RL    FLHANI H + N + 
Sbjct:    65 IVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHAIFNIFF 124

Query:   194 LNSIGPTMEKICGPRRYLGVYFSSAIASN 222
                +G T+EK  G  + + +YF + +  N
Sbjct:   125 QLRMGFTLEKNYGIMKIIILYFVTGMYGN 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81VF8 BAS0235 "Rhomboid family protein" [Bacillus anthracis (taxid:1392)]

 Score = 109 (43.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 25/86 (29%), Positives = 44/86 (51%)

Query:   138 LAVNVL-VYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
             +A+++L +        D  L   A  +  I  G++WRL TS F+H ++ H + N   L  
Sbjct:    13 IAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFV 72

Query:   197 IGPTMEKICGPRRYLGVYFSSAIASN 222
             +G ++EK  G   ++ ++F S I  N
Sbjct:    73 LGSSIEKQLGRFSFIIIFFLSGILGN 98

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	2e-15
COG0705	228	COG0705, COG0705, Membrane associated serine prote	2e-11
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	3e-09
TIGR04239	271	TIGR04239, rhombo_GlpG, rhomboid family protease G	2e-06
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	9e-04
PRK10907	276	PRK10907, PRK10907, intramembrane serine protease	0.001

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
           L+ +GQ WRL TS FLHA   HL+ N  +L   G  +E+I G  R+L +Y  S +A +
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGS 58

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 128 FIGRQW--TNILLAVNVLVYIAQ-----------FATQDKLLLWGAKINSLIDKGQFWRL 174
            + R    T  L+ +N+LV++ +                   L+   +   + + Q WRL
Sbjct: 12  RLIRAPPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRL 71

Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
            T+ FLHA   HL+ N  +L   G  +E+  G  R+L  Y  S + + 
Sbjct: 72  ITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAG 119

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 12/108 (11%)

Query: 127 LFIGRQWTNILLAVNV---LVYI-------AQFAT-QDKLLL-WGAKINSLIDKGQFWRL 174
           +F    W + ++A+++   +V+I       A F T  D LL+  GA + S I +G+  RL
Sbjct: 46  IFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRL 105

Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
               FLHANI H   N +    +G T+EK  G  + + +YF + I  N
Sbjct: 106 ILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGN 153

Length = 278

>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T  ++A+ +LV++  Q     ++    A       + Q WR  T A LH ++ H++ N  
Sbjct: 97  TLSVMALCILVFLLMQLGGDQQVFSALAFPADPSQQSQLWRWFTPALLHFSLLHIIFNLL 156

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
               +G  +EK  G  + L ++  SA+ SN
Sbjct: 157 WWWYLGGQIEKRLGSGKLLVLFLVSALLSN 186

GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain. Length = 271

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNC 191
           + I +G++WRL T  F+H N  HL++N 
Sbjct: 9   AAILEGEWWRLLTGHFVHLNWWHLLMNL 36

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

>gnl|CDD|182828 PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T  ++   V+V+I  Q      ++LW A       K + WR  T A LH ++ H++ N  
Sbjct: 97  TLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLL 156

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
               +G  +EK  G  + + +   SA+ S 
Sbjct: 157 WWWYLGGAVEKRLGSGKLIVITLISALLSG 186

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.93
PTZ00101	278	rhomboid-1 protease; Provisional	99.76
COG0705	228	Membrane associated serine protease [Amino acid tr	99.57
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.36
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.17
KOG2632	258	consensus Rhomboid family proteins [Function unkno	98.97
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.27
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.11
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	97.91
KOG2980	310	consensus Integral membrane protease of the rhombo	97.8
KOG0858	239	consensus Predicted membrane protein [Function unk	97.79
PF12122	101	DUF3582: Protein of unknown function (DUF3582); In	97.59
KOG4463	323	consensus Uncharacterized conserved protein [Funct	96.9
KOG2890	326	consensus Predicted membrane protein [Function unk	95.61
COG5291	313	Predicted membrane protein [Function unknown]	95.0

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.93  E-value=4.1e-26  Score=204.69  Aligned_cols=146  Identities=22%  Similarity=0.205  Sum_probs=117.6

Q ss_pred             Cccccccccccccc-----cccccCCcccceeceeecCCCc-cCCCCCCCCCCccccccccCCChhHHHHHHHHHHHHHH
Q 027362           73 KDQWCENAFRFNGV-----NFFRFTNDAFASSLSFFNGGGT-RKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYI  146 (224)
Q Consensus        73 ~~~w~~~~~~~~~~-----~fl~~p~~~~~~~~s~~~g~~~-~~~y~~~g~~~~~~~~~~~~~~~pvT~~LI~inv~vFi  146 (224)
                      .+.|.....+.+.+     +|++||+|+||+++||++|++. +.+|...     ...++.+.+..|+|..++++|+++|+
T Consensus        35 ~~lwl~d~~~~~~~~~~~~~f~~~p~~~~y~~asw~~g~~~~~~~~~~~-----~~~~~~~~~~~p~T~~li~i~i~vf~  109 (276)
T PRK10907         35 SDIWLADESQAERVRAELARFLENPADPRYLAASWQSGHTNSGLRYRRF-----PFLATLRERAGPLTLGVMIACVVVFI  109 (276)
T ss_pred             eEEEecCHHHHHHHHHHHHHHHhCCCchhHHhcccccCCCCCCcccccc-----hHHHhhccCCCCHHHHHHHHHHHHHH
Confidence            45888765555544     7999999999999999999875 6777652     33344444567899999999999999


Q ss_pred             HHHhchH-HHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcC
Q 027362          147 AQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN  223 (224)
Q Consensus       147 l~~~~~~-~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs~rfl~lYL~Sgl~gsl  223 (224)
                      ++.+..+ ....+...+......+||||++|++|+|+|++||+|||++||++|+.+|+.+|+++|+.+|++++++|++
T Consensus       110 l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~  187 (276)
T PRK10907        110 LMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGW  187 (276)
T ss_pred             HHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            9766543 3333333232334679999999999999999999999999999999999999999999999999999875

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.76  E-value=1.1e-18  Score=156.85  Aligned_cols=95  Identities=28%  Similarity=0.443  Sum_probs=83.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhch---------HHHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHH
Q 027362          129 IGRQWTNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP  199 (224)
Q Consensus       129 ~~~pvT~~LI~inv~vFil~~~~~---------~~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~  199 (224)
                      .-..+|..|+++|+++|++....+         +.+..+|++.++.+.++||||++|++|+|.+++|+++||+++|.+|.
T Consensus        51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~  130 (278)
T PTZ00101         51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGF  130 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            445678899999999999875521         24567788777777889999999999999999999999999999999


Q ss_pred             HHHhhhchHHHHHHHHHHHhhhcC
Q 027362          200 TMEKICGPRRYLGVYFSSAIASNN  223 (224)
Q Consensus       200 ~LE~~lGs~rfl~lYL~Sgl~gsl  223 (224)
                      .+|+.+|+.||+.+|++||++|++
T Consensus       131 ~lE~~~G~~r~~ilYl~sGi~G~l  154 (278)
T PTZ00101        131 TLEKNYGIVKIIILYFLTGIYGNI  154 (278)
T ss_pred             HHHHHHChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999875

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.57  E-value=3.8e-15  Score=128.37  Aligned_cols=94  Identities=30%  Similarity=0.493  Sum_probs=75.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhchHH-HHH-------hhhhhhhhhccC---CcceeeecccccCcHHHHHHHHHHHHHHH
Q 027362          130 GRQWTNILLAVNVLVYIAQFATQDK-LLL-------WGAKINSLIDKG---QFWRLATSAFLHANIAHLMVNCYSLNSIG  198 (224)
Q Consensus       130 ~~pvT~~LI~inv~vFil~~~~~~~-l~~-------~g~~~~~ii~~g---q~WRLiTs~FlH~~~lHLlfNml~L~~~G  198 (224)
                      ..+.|..++++|+++|+........ ...       +...+.......   |+||++|++|+|.|++|+++||+++|.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            3678999999999999997654321 111       222222221111   89999999999999999999999999999


Q ss_pred             HHHHhhhchHHHHHHHHHHHhhhcC
Q 027362          199 PTMEKICGPRRYLGVYFSSAIASNN  223 (224)
Q Consensus       199 ~~LE~~lGs~rfl~lYL~Sgl~gsl  223 (224)
                      ..+|+.+|+.+|+.+|+++|+++++
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~  120 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGL  120 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.36  E-value=6.1e-13  Score=105.68  Aligned_cols=57  Identities=40%  Similarity=0.730  Sum_probs=51.9

Q ss_pred             ccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcC
Q 027362          167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN  223 (224)
Q Consensus       167 ~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs~rfl~lYL~Sgl~gsl  223 (224)
                      +++|+||++|+.|+|.|+.|+++|++.++.+|..+|+.+|+.+++.+|+++++++++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l   58 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSL   58 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhh
Confidence            579999999999999999999999999999999999999999999999999998864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.17  E-value=2.3e-12  Score=117.83  Aligned_cols=65  Identities=34%  Similarity=0.537  Sum_probs=59.7

Q ss_pred             hhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcC
Q 027362          159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN  223 (224)
Q Consensus       159 g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs~rfl~lYL~Sgl~gsl  223 (224)
                      +.+.....+.+|+||++|++|+|.|+.||++||+.+.++|..+|...|..|+..+|+++++.||+
T Consensus       107 ~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSl  171 (316)
T KOG2289|consen  107 GLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSL  171 (316)
T ss_pred             CceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHH
Confidence            33444556889999999999999999999999999999999999999999999999999999985

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=98.97  E-value=7.7e-10  Score=98.56  Aligned_cols=92  Identities=25%  Similarity=0.305  Sum_probs=74.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhchHHHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhc-h
Q 027362          129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG-P  207 (224)
Q Consensus       129 ~~~pvT~~LI~inv~vFil~~~~~~~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lG-s  207 (224)
                      +...+|-.+..++.++|++.....-.  .....+...+.+.|.||++|++++|.+..|++|||+.+|.+|...|+..| +
T Consensus        13 ~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t   90 (258)
T KOG2632|consen   13 KIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTT   90 (258)
T ss_pred             cchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccce
Confidence            34567888999999999886544322  22233455567899999999999999999999999999999999999999 8


Q ss_pred             HHHHHHHHHHHhhhc
Q 027362          208 RRYLGVYFSSAIASN  222 (224)
Q Consensus       208 ~rfl~lYL~Sgl~gs  222 (224)
                      .+++.+..+.+++++
T Consensus        91 ~~~l~~~~llalf~g  105 (258)
T KOG2632|consen   91 VRILMFTVLLALFSG  105 (258)
T ss_pred             ehHHHHHHHHHHHHH
Confidence            888877777777655

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.27  E-value=5e-07  Score=69.91  Aligned_cols=54  Identities=28%  Similarity=0.423  Sum_probs=51.7

Q ss_pred             CcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcC
Q 027362          170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNN  223 (224)
Q Consensus       170 q~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs~rfl~lYL~Sgl~gsl  223 (224)
                      .+|+++|+.|++.++..+++|.+.++..|+.+|+.+|++.++.++++.++++|+
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl   60 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNL   60 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHH
Confidence            789999999999999999999999999999999999999999999999888775

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.11  E-value=8.6e-06  Score=69.65  Aligned_cols=89  Identities=21%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhchHHHHHhhhhhhhhhccCCcceeeecccccCcH-HHHHHHHHHHHHHHHHHHhh-h-ch
Q 027362          131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI-AHLMVNCYSLNSIGPTMEKI-C-GP  207 (224)
Q Consensus       131 ~pvT~~LI~inv~vFil~~~~~~~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~-lHLlfNml~L~~~G~~LE~~-l-Gs  207 (224)
                      +|+|...++.++++.++..+.--........+..+..++|+||++|+.|.-++. +..++|++.++..++.+|+. + |+
T Consensus         2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~   81 (197)
T PF04511_consen    2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGR   81 (197)
T ss_pred             ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCC
Confidence            378988888888888876554222222223344455789999999999986554 79999999999999999998 2 33


Q ss_pred             -HHHHHHHHHHHh
Q 027362          208 -RRYLGVYFSSAI  219 (224)
Q Consensus       208 -~rfl~lYL~Sgl  219 (224)
                       ..|+...+.+++
T Consensus        82 ~ady~~~ll~~~~   94 (197)
T PF04511_consen   82 SADYLWFLLFGAS   94 (197)
T ss_pred             HHHHHHHHHHHHH
Confidence             467655555443

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=97.91  E-value=2.3e-06  Score=81.87  Aligned_cols=57  Identities=37%  Similarity=0.516  Sum_probs=54.6

Q ss_pred             cCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcCC
Q 027362          168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASNNS  224 (224)
Q Consensus       168 ~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs~rfl~lYL~Sgl~gsls  224 (224)
                      ..|++||+|+.|+|+++.|++..|...+.+-+.+|+..|..|+.++|++||+.||++
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLA  504 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLA  504 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccch
Confidence            358999999999999999999999999999999999999999999999999999985

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=97.80  E-value=2e-05  Score=72.00  Aligned_cols=87  Identities=23%  Similarity=0.328  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHhchHH--HHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHH-HHHhhhchHH
Q 027362          133 WTNILLAVNVLVYIAQFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP-TMEKICGPRR  209 (224)
Q Consensus       133 vT~~LI~inv~vFil~~~~~~~--l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~-~LE~~lGs~r  209 (224)
                      +.+.|+++|+++|.+|.+.+..  ...|....+  +...-.|.++++.|.|.+.+|+..||+.++.+.. .+....|...
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~--~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~  194 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRN--AYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSS  194 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcchhhhhhhHHhhcc--cccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhh
Confidence            6789999999999999887543  344443222  3445678899999999999999999999998888 8999999999


Q ss_pred             HHHHHHHHHhhh
Q 027362          210 YLGVYFSSAIAS  221 (224)
Q Consensus       210 fl~lYL~Sgl~g  221 (224)
                      +.++|+.++..|
T Consensus       195 ~~AlylSa~~~~  206 (310)
T KOG2980|consen  195 FFALYLSAGVKG  206 (310)
T ss_pred             cccceecccccc
Confidence            999999655544

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.79  E-value=4e-05  Score=67.93  Aligned_cols=90  Identities=17%  Similarity=0.102  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhchHHHHHhhhhhhhhhccCCcceeeecccccCc-HHHHHHHHHHHHHHHHHHHhhhc---
Q 027362          131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-IAHLMVNCYSLNSIGPTMEKICG---  206 (224)
Q Consensus       131 ~pvT~~LI~inv~vFil~~~~~~~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~-~lHLlfNml~L~~~G~~LE~~lG---  206 (224)
                      .|+|.....+|++..++..+.--+....-.++.-++.+.|+||++|+.+.-+. -+|.++||+.++--.+.+|+-.=   
T Consensus        13 PpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~r   92 (239)
T KOG0858|consen   13 PPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGR   92 (239)
T ss_pred             ChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            57899999999998888654321111122223334688999999999998866 68999999999999999999432   


Q ss_pred             hHHHHHHHHHHHhh
Q 027362          207 PRRYLGVYFSSAIA  220 (224)
Q Consensus       207 s~rfl~lYL~Sgl~  220 (224)
                      +..|+..+++++++
T Consensus        93 tadf~~mllf~~~l  106 (239)
T KOG0858|consen   93 TADFLYMLLFGAVL  106 (239)
T ss_pred             hhHHHHHHHHHHHH
Confidence            36788777777664

>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.59  E-value=1.9e-05  Score=61.62  Aligned_cols=57  Identities=12%  Similarity=0.091  Sum_probs=18.0

Q ss_pred             cccccccccccc-----ccccccCCcccceeceeecCCCc-cCCCCCCCCCCccccccccCCChhHHH
Q 027362           74 DQWCENAFRFNG-----VNFFRFTNDAFASSLSFFNGGGT-RKNSGHEGTSHLDTARTNLFIGRQWTN  135 (224)
Q Consensus        74 ~~w~~~~~~~~~-----~~fl~~p~~~~~~~~s~~~g~~~-~~~y~~~g~~~~~~~~~~~~~~~pvT~  135 (224)
                      +.|.....++..     .+|++||+|+||+++||++|++. +..|+..     .+.++......|+|.
T Consensus        38 ~lwl~de~~~~~a~~el~~Fl~nP~~~rYqaASWq~g~~~~~~~y~~~-----s~~~~l~~~aGplTl  100 (101)
T PF12122_consen   38 ALWLHDEEHLEQAEQELEEFLQNPNDPRYQAASWQTGSTRTQFSYQSP-----SLLQQLRAQAGPLTL  100 (101)
T ss_dssp             EEEES-GGGHHHHHHHHHHHHHS-SS------------------------------------S-HHHH
T ss_pred             EEEEeCHHHHHHHHHHHHHHHHCCCCHHHHHHHHhcCCccCccCcCCc-----hHHHHHHHcCCCeec
Confidence            578776666544     47999999999999999999997 5777763     355555567778885

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.00053  Score=62.02  Aligned_cols=91  Identities=22%  Similarity=0.310  Sum_probs=64.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhchHHHHHhhhhhhhhh-ccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhch
Q 027362          129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (224)
Q Consensus       129 ~~~pvT~~LI~inv~vFil~~~~~~~l~~~g~~~~~ii-~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs  207 (224)
                      .+.|+|...++...++-++..+..-+ -.++..+.+.+ .+.|+||++-+.|.--+-..+++-++.+|.+ +.+||.+|+
T Consensus         9 ~nmpVTK~~~iT~~~~~vvagI~~~k-~~f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGS   86 (323)
T KOG4463|consen    9 HNMPVTKAFVITSALFTVVAGIQGRK-SKFGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGS   86 (323)
T ss_pred             cccchHHHHHHHHHHHHHHHHhhhcc-cccccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhcc
Confidence            45678866655544444443222110 11223333333 3479999999999999999999999988887 999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 027362          208 RRYLGVYFSSAIAS  221 (224)
Q Consensus       208 ~rfl~lYL~Sgl~g  221 (224)
                      -||..+.+.+++.+
T Consensus        87 hky~~fiv~s~~~~  100 (323)
T KOG4463|consen   87 HKYSVFIVFSGTVS  100 (323)
T ss_pred             ccceeehhHHHHHH
Confidence            99998888888765

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=95.61  E-value=0.012  Score=54.22  Aligned_cols=52  Identities=23%  Similarity=0.281  Sum_probs=47.7

Q ss_pred             CCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhh
Q 027362          169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA  220 (224)
Q Consensus       169 gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs~rfl~lYL~Sgl~  220 (224)
                      ...|+++|+.|+-.+++-.++|.+.+-+.|+.+|+.+|+..++.+|.+.-..
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~  116 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGS  116 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhch
Confidence            4789999999999999999999999999999999999999999888776443

>COG5291 Predicted membrane protein [Function unknown]

Probab=95.00  E-value=0.026  Score=50.89  Aligned_cols=43  Identities=21%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             hccCCcceeeecccccCc-HHHHHHHHHHHHHHHHHHHh-hhchH
Q 027362          166 IDKGQFWRLATSAFLHAN-IAHLMVNCYSLNSIGPTMEK-ICGPR  208 (224)
Q Consensus       166 i~~gq~WRLiTs~FlH~~-~lHLlfNml~L~~~G~~LE~-~lGs~  208 (224)
                      +.+.|+||++|+..+-.+ -+..++|++.+|--.+.+|+ .+|+.
T Consensus        55 ~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          55 LKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            467799999998887765 47899999999999999998 45554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	7e-26
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	5e-24

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 98.1 bits (245), Expect = 7e-26
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 134 TNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA     D +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
               +G  +EK  G  + + +   SA+ S 
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSG 96

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 93.6 bits (233), Expect = 5e-24
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCY 192
           T IL A+ VL+YIAQ    +  +++     +  +   + WR  +   +H +  H++ N  
Sbjct: 12  TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLS 71

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
                G  +E+  G  + L +Y  ++  + 
Sbjct: 72  WFFIFGGMIERTFGSVKLLMLYVVASAITG 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.79
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.77

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.79  E-value=2.5e-19  Score=151.12  Aligned_cols=95  Identities=21%  Similarity=0.288  Sum_probs=81.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhchH-HHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhch
Q 027362          129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (224)
Q Consensus       129 ~~~pvT~~LI~inv~vFil~~~~~~-~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs  207 (224)
                      +..|+|..++++|+++|+++...++ ....+....+..+..+||||++|++|+|.|+.|+++||+++|.+|..+|+.+|+
T Consensus         7 ~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~   86 (196)
T 2nr9_A            7 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS   86 (196)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence            4468999999999999999876543 333433334434578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC
Q 027362          208 RRYLGVYFSSAIASNN  223 (224)
Q Consensus       208 ~rfl~lYL~Sgl~gsl  223 (224)
                      ++|+.+|++++++|++
T Consensus        87 ~~~l~~yl~~~~~~~l  102 (196)
T 2nr9_A           87 VKLLMLYVVASAITGY  102 (196)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999875

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.77  E-value=6.8e-19  Score=146.61  Aligned_cols=94  Identities=27%  Similarity=0.357  Sum_probs=80.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhchH-HHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhchH
Q 027362          130 GRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR  208 (224)
Q Consensus       130 ~~pvT~~LI~inv~vFil~~~~~~-~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs~  208 (224)
                      ..|+|..++++|+++|+++...++ ....+....+..+.++|+||++|++|+|.|+.|+++||+++|.+|+.+|+.+|++
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~   82 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG   82 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            358999999999999999866543 3333333334345789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcC
Q 027362          209 RYLGVYFSSAIASNN  223 (224)
Q Consensus       209 rfl~lYL~Sgl~gsl  223 (224)
                      +|+.+|+++++++++
T Consensus        83 ~fl~~yl~~~i~~~l   97 (181)
T 2xov_A           83 KLIVITLISALLSGY   97 (181)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	3e-15
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	2e-11

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 69.0 bits (168), Expect = 3e-15
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 134 TNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA     D +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
               +G  +EK  G  + + +   SA+ S 
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSG 96

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 128 FIGRQW--TNILLAVNVLVYIAQ-FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
           F+ +Q   T IL A+ VL+YIAQ    +D ++             + WR  +   +H + 
Sbjct: 1   FLAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSN 60

Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASN 222
            H++ N       G  +E+  G  + L +Y  ++  + 
Sbjct: 61  LHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITG 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.78
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.74

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.4e-19  Score=146.02  Aligned_cols=95  Identities=25%  Similarity=0.338  Sum_probs=82.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhc-hHHHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhch
Q 027362          129 IGRQWTNILLAVNVLVYIAQFAT-QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (224)
Q Consensus       129 ~~~pvT~~LI~inv~vFil~~~~-~~~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs  207 (224)
                      +.+|+|..++++|+++|+++... +.....+...+.....++|+||++|++|+|.|+.|+++||+.+|.+|+.+|+.+|+
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~   81 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence            35699999999999999986554 34555555444455678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC
Q 027362          208 RRYLGVYFSSAIASNN  223 (224)
Q Consensus       208 ~rfl~lYL~Sgl~gsl  223 (224)
                      ++++.+|++++++|++
T Consensus        82 ~~~~~~~~~~~~~g~l   97 (180)
T d3b45a1          82 GKLIVITLISALLSGY   97 (180)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hhheeeeeHHHHHHHH
Confidence            9999999999999874

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.74  E-value=1.8e-18  Score=142.25  Aligned_cols=95  Identities=22%  Similarity=0.310  Sum_probs=81.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhc-hHHHHHhhhhhhhhhccCCcceeeecccccCcHHHHHHHHHHHHHHHHHHHhhhch
Q 027362          129 IGRQWTNILLAVNVLVYIAQFAT-QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (224)
Q Consensus       129 ~~~pvT~~LI~inv~vFil~~~~-~~~l~~~g~~~~~ii~~gq~WRLiTs~FlH~~~lHLlfNml~L~~~G~~LE~~lGs  207 (224)
                      +..|+|..++++|+++|+++... ++....+...+.....++|+||++|++|+|.|+.|+++||++++.+|..+|+.+|+
T Consensus         4 ~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~   83 (189)
T d2nr9a1           4 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS   83 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34589999999999999987664 33444444434445678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC
Q 027362          208 RRYLGVYFSSAIASNN  223 (224)
Q Consensus       208 ~rfl~lYL~Sgl~gsl  223 (224)
                      .+++.+|++++++|++
T Consensus        84 ~~~~~~~~~~~~~~~l   99 (189)
T d2nr9a1          84 VKLLMLYVVASAITGY   99 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHH
Confidence            9999999999998874