Citrus Sinensis ID: 027367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEEEccEEEEccccEEEccccccccccEEEEccEEEEEEEEEEccccccccccccccccccccEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHccccccEEEEEEEEcccEEEEcccEEEccccEEEEccEEEcccEEEEEEEEEccHHHHcccccccccccccccEcccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEEEEccccEEEEEccHHHccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meaartipgrenggncdiknlsrgskiylpvfvdganlstgdmhfsqgdgevTFCGAIEMSGFLDLKCEIIRGGMkeyltpmgptplhvnpifeigpveprfsEWLVFEGisvdesggqhYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSccpcegrisgivdspnavatlavptaifdqdirpksskvpvgprlvrkpdvlkcsyegnlpttenpgari
Flexible Loop (DISEMBL)
meaartipgrenggncdiknlsrGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPtaifdqdirpksskvpvgprlvrkpdvlkcsyegnlpttenpgari
Low Complexity Region (SEG)
MEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI
Disordered region (IsUnstruct)
***************CDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQDI*******************L******************
Disordered Region (DISOPRED)
***ARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQDIR******************LKCSYEGNLPT********
Disordered Region (DISEMBL)
********GRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI
Disordered Region (DISPRO)
*****TI******GNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTEN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q50228	407	Formamidase OS=Methylophi	N/A	no	0.857	0.471	0.549	1e-61
Q9URY7	410	Putative formamidase C869	yes	no	0.803	0.439	0.560	2e-56
Q07838	406	Acetamidase OS=Mycobacter	no	no	0.776	0.428	0.518	5e-49

>sp|Q50228|FMDA_METME Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1

 Score =  236 bits (602), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 149/204 (73%), Gaps = 12/204 (5%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           E ART+P R++GGNCDIKNL++GS++Y PV+V    LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPRDHGGNCDIKNLTKGSRVYFPVYVKDGGLSMGDLHFSQGDGEITFCGAIEMA 269

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           G+LD+K  +I+ G+K+Y           NP+F+  P+ P + ++++FEGISVDE+G QHY
Sbjct: 270 GYLDIKVGLIKDGVKKYGIK--------NPVFQPSPITPTYRDYMIFEGISVDEAGKQHY 321

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LD  +AY++A LNAI+YL KFGYS EQ   +L   P EG ISGIVD PNA ATL +PT I
Sbjct: 322 LDVHIAYRQACLNAIEYLKKFGYSGEQAVSILGTAPVEGHISGIVDIPNACATLWIPTEI 381

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDV 205
           F+ DIRP +     GP+++  P V
Sbjct: 382 FEFDIRPNAD----GPKIMVPPGV 401

Hydrolyzes formamide with the production of ammonia which can be used as a source of nitrogen for growth. Also acts, more slowly, on acetamide, propanamide and butanamide.
Methylophilus methylotrophus (taxid: 17)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 9

>sp|Q9URY7|FMDA_SCHPO Putative formamidase C869.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.04 PE=3 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 137/191 (71%), Gaps = 11/191 (5%)

Query: 2   EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
           E ARTIPGR ENGGNCDIKNLSRGSK++LPV V GA LS GD+HFSQGDGE++FCGAIEM
Sbjct: 212 EGARTIPGRPENGGNCDIKNLSRGSKVFLPVHVPGAKLSIGDLHFSQGDGEISFCGAIEM 271

Query: 61  SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRF--SEWLVFEGISVDESGG 118
           +G + +KC+I++ G+ +            +P++  GPVEP F  S +L FEG SVDESG 
Sbjct: 272 AGSITIKCKILKNGISDLAMK--------SPMYLPGPVEPHFSPSRYLTFEGFSVDESGK 323

Query: 119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
           QHYL  T AY++  L  I+Y  +FGY+  Q+YLLLSC P +G ++GIVD PN+  T+ VP
Sbjct: 324 QHYLCTTTAYRQTCLRVIEYFRRFGYNDYQLYLLLSCAPIQGHVAGIVDIPNSCTTIGVP 383

Query: 179 TAIFDQDIRPK 189
             IF+ D+ P 
Sbjct: 384 MDIFEFDVSPN 394

Hydrolyzes formamide with the production of ammonia which can be used as a source of nitrogen for growth. May also act on acetamide, propanamide and butanamide.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 9

>sp|Q07838|AMDA_MYCSM Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2

 Score =  194 bits (492), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 129/191 (67%), Gaps = 17/191 (8%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           + ART+P RENGGN DIKN +RGS+I+ PVFV+GA LS GD+HFSQGDGE+ FCGAIEM 
Sbjct: 218 DGARTVPPRENGGNHDIKNFTRGSRIFYPVFVEGAMLSGGDLHFSQGDGEINFCGAIEMG 277

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQH- 120
           GF+D+  ++I+GGM+ Y        +  NPIF  G VEP +SEWL F GISVD +  ++ 
Sbjct: 278 GFIDMHVDLIKGGMETY-------GVTTNPIFMPGRVEPLYSEWLTFIGISVDHAENRNA 330

Query: 121 YLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTA 180
           Y+DAT+AY+ A LNAI+YL K+GY+ EQ YL+L   P EG          + A+    T 
Sbjct: 331 YMDATMAYRNACLNAIEYLKKWGYTGEQAYLILGTSPIEGA---------SAASWTSRTH 381

Query: 181 IFDQDIRPKSS 191
           +     RP+SS
Sbjct: 382 VVRCSCRPRSS 392

Allows acetamide to be used as a sole carbon or nitrogen source.

Mycobacterium smegmatis (taxid: 1772)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
147768858	487	hypothetical protein VITISV_034053 [Viti	0.991	0.455	0.932	1e-119
225438974	451	PREDICTED: formamidase [Vitis vinifera]	0.991	0.492	0.932	1e-119
255568565	452	Acetamidase, putative [Ricinus communis]	0.986	0.488	0.932	1e-118
225438972	451	PREDICTED: formamidase isoform 2 [Vitis	0.991	0.492	0.928	1e-118
359480572	431	PREDICTED: formamidase [Vitis vinifera]	0.991	0.515	0.928	1e-118
147768857	451	hypothetical protein VITISV_034052 [Viti	0.991	0.492	0.928	1e-118
225438970	451	PREDICTED: formamidase isoform 1 [Vitis	0.991	0.492	0.928	1e-118
359480566	451	PREDICTED: formamidase-like isoform 1 [V	0.982	0.487	0.927	1e-118
359480568	431	PREDICTED: formamidase-like isoform 2 [V	0.982	0.510	0.927	1e-118
222840535	452	formamidase [Lupinus albus]	0.986	0.488	0.923	1e-118

>gi|147768858|emb|CAN78134.1| hypothetical protein VITISV_034053 [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/223 (93%), Positives = 219/223 (98%), Gaps = 1/223 (0%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 266 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 325

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QH+
Sbjct: 326 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHF 385

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDATVAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 386 LDATVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 445

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI 224
           FDQDIRPK +KVPVGPRLVRKPDVL+C+Y+GNLPTT+NP A +
Sbjct: 446 FDQDIRPK-TKVPVGPRLVRKPDVLRCTYDGNLPTTKNPAATM 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438974|ref|XP_002284318.1| PREDICTED: formamidase [Vitis vinifera] gi|296087333|emb|CBI33707.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/223 (93%), Positives = 219/223 (98%), Gaps = 1/223 (0%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QH+
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHF 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDATVAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDATVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI 224
           FDQDIRPK +KVPVGPRLVRKPDVL+C+Y+GNLPTT+NP A +
Sbjct: 410 FDQDIRPK-TKVPVGPRLVRKPDVLRCTYDGNLPTTKNPAATM 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568565|ref|XP_002525256.1| Acetamidase, putative [Ricinus communis] gi|223535414|gb|EEF37084.1| Acetamidase, putative [Ricinus communis]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/221 (93%), Positives = 216/221 (97%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLSRGSKIYLPVFV+GANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVEGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDE G QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDEGGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLAVPTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 409

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGA 222
           FDQDIRPK+SKVPVGPRLVR+PDVLKC+Y+G LP T+NP A
Sbjct: 410 FDQDIRPKASKVPVGPRLVRRPDVLKCTYDGTLPITKNPSA 450

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438972|ref|XP_002284310.1| PREDICTED: formamidase isoform 2 [Vitis vinifera] gi|296087335|emb|CBI33709.3| unnamed protein product [Vitis vinifera]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/223 (92%), Positives = 218/223 (97%), Gaps = 1/223 (0%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLS GSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSTGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI 224
           FDQDIRPK +KVPVGPRLVRKPDVL+C+Y+GNLPTT+NP A +
Sbjct: 410 FDQDIRPK-TKVPVGPRLVRKPDVLRCTYDGNLPTTKNPAATM 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480572|ref|XP_003632495.1| PREDICTED: formamidase [Vitis vinifera]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/223 (92%), Positives = 218/223 (97%), Gaps = 1/223 (0%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLS GSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 210 EAARTIPGRENGGNCDIKNLSTGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 269

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 270 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 329

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 330 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 389

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI 224
           FDQDIRPK +KVPVGPRLVRKPDVL+C+Y+GNLPTT+NP A +
Sbjct: 390 FDQDIRPK-TKVPVGPRLVRKPDVLRCTYDGNLPTTKNPAATM 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768857|emb|CAN78133.1| hypothetical protein VITISV_034052 [Vitis vinifera]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/223 (92%), Positives = 218/223 (97%), Gaps = 1/223 (0%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLS GSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSTGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI 224
           FDQDIRPK +KVPVGPRLVRKPDVL+C+Y+GNLPTT+NP A +
Sbjct: 410 FDQDIRPK-TKVPVGPRLVRKPDVLRCTYDGNLPTTKNPAATM 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438970|ref|XP_002284306.1| PREDICTED: formamidase isoform 1 [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/223 (92%), Positives = 218/223 (97%), Gaps = 1/223 (0%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLS GSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSTGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGARI 224
           FDQDIRPK +KVPVGPRLVRKPDVL+C+Y+GNLPTT+NP A +
Sbjct: 410 FDQDIRPK-TKVPVGPRLVRKPDVLRCTYDGNLPTTKNPAATM 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480566|ref|XP_002284324.2| PREDICTED: formamidase-like isoform 1 [Vitis vinifera] gi|296087332|emb|CBI33706.3| unnamed protein product [Vitis vinifera]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/221 (92%), Positives = 217/221 (98%), Gaps = 1/221 (0%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAART PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEM+
Sbjct: 230 EAARTTPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMN 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGA 222
           FDQDIRPK +KVPVGPRLVRKPDVL+C+Y+GNLPTT+NP +
Sbjct: 410 FDQDIRPK-TKVPVGPRLVRKPDVLRCTYDGNLPTTKNPAS 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480568|ref|XP_003632494.1| PREDICTED: formamidase-like isoform 2 [Vitis vinifera]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/221 (92%), Positives = 217/221 (98%), Gaps = 1/221 (0%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAART PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEM+
Sbjct: 210 EAARTTPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMN 269

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 270 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 329

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 330 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 389

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGA 222
           FDQDIRPK +KVPVGPRLVRKPDVL+C+Y+GNLPTT+NP +
Sbjct: 390 FDQDIRPK-TKVPVGPRLVRKPDVLRCTYDGNLPTTKNPAS 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222840535|gb|ACM68705.1| formamidase [Lupinus albus]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/221 (92%), Positives = 215/221 (97%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLSRGSKIYLPVFV+GANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVEGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVD+PNAVATLA+P AI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDAPNAVATLAIPIAI 409

Query: 182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGA 222
           FDQDIRPK+SKVP GPRL++KPDVLKC+Y+GNLPTT N  A
Sbjct: 410 FDQDIRPKNSKVPRGPRLIKKPDVLKCTYDGNLPTTRNLSA 450

Source: Lupinus albus

Species: Lupinus albus

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2120086	452	AT4G37550 "AT4G37550" [Arabido	0.986	0.488	0.904	2.1e-109
TAIR|locus:2120101	452	AT4G37560 "AT4G37560" [Arabido	0.973	0.482	0.889	1.4e-105
ASPGD|ASPL0000074501	411	fmdS [Emericella nidulans (tax	0.821	0.447	0.594	2.8e-57
CGD|CAL0000012	423	orf19.1641 [Candida albicans (	0.812	0.430	0.595	7.8e-55
UNIPROTKB|G4N7R0	435	MGG_17079 "Formamidase" [Magna	0.870	0.448	0.544	7.8e-55
POMBASE|SPAC869.04	410	SPAC869.04 "formamidase-like p	0.834	0.456	0.545	3.4e-54
UNIPROTKB|Q5LSD4	312	SPO1834 "Acetamidase/formamida	0.290	0.208	0.455	4.1e-12
TIGR_CMR|SPO_1834	312	SPO_1834 "acetamidase/formamid	0.290	0.208	0.455	4.1e-12
UNIPROTKB|Q81Q40	304	BAS2418 "Acetamidase/formamida	0.308	0.226	0.402	2.2e-07
TIGR_CMR|BA_2596	304	BA_2596 "acetamidase/formamida	0.308	0.226	0.402	2.2e-07

TAIR|locus:2120086 AT4G37550 "AT4G37550" [Arabidopsis thaliana (taxid:3702)]

 Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
 Identities = 200/221 (90%), Positives = 213/221 (96%)

Query:     2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
             EAARTIPGRENGGNCDIKNLSRGSKIYLPVFV+GANLSTGDMHFSQGDGE++FCGAIEMS
Sbjct:   230 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVEGANLSTGDMHFSQGDGEISFCGAIEMS 289

Query:    62 GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
             GFL+LKCEIIR GM+EYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct:   290 GFLELKCEIIRNGMQEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGKQHY 349

Query:   122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
             LDATVAYKRAVLNAIDYL KFGYSKEQVYLLLSCCPCEGR+SGIVDSPNAVATLA+PTAI
Sbjct:   350 LDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRLSGIVDSPNAVATLAIPTAI 409

Query:   182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTENPGA 222
             FDQDIRPK+ KVPVGPR+VRKPDVLK +Y+G LP T+NP +
Sbjct:   410 FDQDIRPKNRKVPVGPRVVRKPDVLKSTYDGKLPITKNPSS 450

GO:0004328 "formamidase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2120101 AT4G37560 "AT4G37560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 194/218 (88%), Positives = 207/218 (94%)

Query:     2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
             EAARTIPGRENGGNCDIKNLS GSKIYLPVFV+GANLSTGDMHFSQGDGE++FCGAIEMS
Sbjct:   230 EAARTIPGRENGGNCDIKNLSSGSKIYLPVFVEGANLSTGDMHFSQGDGEISFCGAIEMS 289

Query:    62 GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
             GFL+LKCEIIR GM+EYLTPMGPT LHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct:   290 GFLELKCEIIRNGMQEYLTPMGPTTLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query:   122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
             LDATVAYKRAVLNAIDYL KFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct:   350 LDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query:   182 FDQDIRPKSSKVPVGPRLVRKPDVLKCSYEGNLPTTEN 219
             FDQDIRPK+ KVP G R+V+KPDV+K +Y+G LP T+N
Sbjct:   410 FDQDIRPKTRKVPTGARIVKKPDVMKSTYDGKLPITKN 447

GO:0004328 "formamidase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

ASPGD|ASPL0000074501 fmdS [Emericella nidulans (taxid:162425)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 116/195 (59%), Positives = 141/195 (72%)

Query:     2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
             E ARTIPGR E+GGNCDIKNLSRGSK+YLPV V GA  S GD+HFSQGDGE++FCGAIEM
Sbjct:   213 EGARTIPGRPEHGGNCDIKNLSRGSKVYLPVHVPGAKFSVGDLHFSQGDGEISFCGAIEM 272

Query:    61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFS--EWLVFEGISVDESGG 118
             +G + LK  +I+ GM +            +PIF  GPVEP+F    +L FEG SVDE G 
Sbjct:   273 AGVITLKFTVIKDGMAKMAMK--------SPIFHPGPVEPQFGPGRYLTFEGFSVDEKGK 324

Query:   119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
             QHYLDATVAY++  L  I+YL ++GY+  Q+YLLLSC P +G I+G+VD PNA  TL VP
Sbjct:   325 QHYLDATVAYRQTCLRVIEYLRRYGYNDYQIYLLLSCAPVQGHIAGLVDIPNACTTLGVP 384

Query:   179 TAIFDQDIRPKSSKV 193
               IFD DIRP++  V
Sbjct:   385 MDIFDFDIRPEADAV 399

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0004061 "arylformamidase activity" evidence=RCA

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0000012 orf19.1641 [Candida albicans (taxid:5476)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 115/193 (59%), Positives = 139/193 (72%)

Query:     2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
             E ARTIPGR ENGGNCDIKNLSRGSK YLPV+VDGA LS GD+HFSQGDGE++FCGAIEM
Sbjct:   215 EGARTIPGRPENGGNCDIKNLSRGSKCYLPVYVDGAKLSVGDLHFSQGDGEISFCGAIEM 274

Query:    61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRF--SEWLVFEGISVDESGG 118
              G + +K  II+GG+K+            +PIF  G V+  +  S +L FEG SVDE+G 
Sbjct:   275 PGVITIKVSIIKGGIKKLSLK--------SPIFIPGDVQNHYGPSRYLTFEGFSVDEAGK 326

Query:   119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
             Q YL AT AY++A + AI+YL KFGY+  Q+YLLLS  P EG I+GIVD PNA  TL +P
Sbjct:   327 QQYLCATTAYRQACIRAIEYLRKFGYNDYQIYLLLSSAPIEGHIAGIVDVPNACTTLGIP 386

Query:   179 TAIFDQDIRPKSS 191
               IFD DI P+ +
Sbjct:   387 MDIFDFDISPEGN 399

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|G4N7R0 MGG_17079 "Formamidase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 116/213 (54%), Positives = 147/213 (69%)

Query:     2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
             E ARTIPGR E+GGNCDIKNLSRGSK+YLPV V GA  S GD+HFSQGDGE++FCGAIEM
Sbjct:   211 EGARTIPGRPEHGGNCDIKNLSRGSKVYLPVHVSGAKFSVGDLHFSQGDGEISFCGAIEM 270

Query:    61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFS--EWLVFEGISVDESGG 118
             +G + +  ++I+ GM +    +G      +PI+  GPVEP F     + FEG SVD+ G 
Sbjct:   271 AGVITINFKVIKNGMAD----LGLK----SPIYIPGPVEPHFGPGRHIYFEGFSVDQHGK 322

Query:   119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
             QHY+D TVAY++  L  I+YL +FGYS  Q+YLL+SC P +G I+GIVD PNA  TL +P
Sbjct:   323 QHYMDVTVAYRQTCLRVIEYLRRFGYSDYQIYLLMSCAPIQGHIAGIVDIPNACTTLGLP 382

Query:   179 TAIFDQDIRPKSSKVPVGPRLVRKPDVLKCSYE 211
               IFD DI P  S VP      +K D+  C++E
Sbjct:   383 MDIFDFDISP--SAVPA-----KKLDMGTCAFE 408

GO:0005575 "cellular_component" evidence=ND

GO:0044271 "cellular nitrogen compound biosynthetic process" evidence=IEP

POMBASE|SPAC869.04 SPAC869.04 "formamidase-like protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 109/200 (54%), Positives = 142/200 (71%)

Query:     2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
             E ARTIPGR ENGGNCDIKNLSRGSK++LPV V GA LS GD+HFSQGDGE++FCGAIEM
Sbjct:   212 EGARTIPGRPENGGNCDIKNLSRGSKVFLPVHVPGAKLSIGDLHFSQGDGEISFCGAIEM 271

Query:    61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFS--EWLVFEGISVDESGG 118
             +G + +KC+I++ G+ +            +P++  GPVEP FS   +L FEG SVDESG 
Sbjct:   272 AGSITIKCKILKNGISDLAMK--------SPMYLPGPVEPHFSPSRYLTFEGFSVDESGK 323

Query:   119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
             QHYL  T AY++  L  I+Y  +FGY+  Q+YLLLSC P +G ++GIVD PN+  T+ VP
Sbjct:   324 QHYLCTTTAYRQTCLRVIEYFRRFGYNDYQLYLLLSCAPIQGHVAGIVDIPNSCTTIGVP 383

Query:   179 TAIFDQDIRP--KSSKVPVG 196
               IF+ D+ P  K+  + +G
Sbjct:   384 MDIFEFDVSPNGKAKIIDLG 403

GO:0004328 "formamidase activity" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0034641 "cellular nitrogen compound metabolic process" evidence=ISM

UNIPROTKB|Q5LSD4 SPO1834 "Acetamidase/formamidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 142 (55.0 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query:     7 IPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCG-AIEMSGFLD 65
             +P R  GGN DI++ + G+ +YLPV V G  LS GD H +QGDGE+  CG AIE    + 
Sbjct:   155 VPPRRVGGNLDIRDNAVGTTLYLPVEVAGGLLSLGDTHAAQGDGEI--CGTAIESPMDVA 212

Query:    66 LKCEIIRG 73
             +K ++++G
Sbjct:   213 IKIDLLKG 220

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1834 SPO_1834 "acetamidase/formamidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 142 (55.0 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query:     7 IPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCG-AIEMSGFLD 65
             +P R  GGN DI++ + G+ +YLPV V G  LS GD H +QGDGE+  CG AIE    + 
Sbjct:   155 VPPRRVGGNLDIRDNAVGTTLYLPVEVAGGLLSLGDTHAAQGDGEI--CGTAIESPMDVA 212

Query:    66 LKCEIIRG 73
             +K ++++G
Sbjct:   213 IKIDLLKG 220

GO:0008150 "biological_process" evidence=ND

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=ISS

UNIPROTKB|Q81Q40 BAS2418 "Acetamidase/formamidase family protein" [Bacillus anthracis (taxid:1392)]

 Score = 138 (53.6 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query:    11 ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEI 70
             ++GGN D K +  G+ + LPV V GA L+ GD+H + GDGE+   G +E++G + +   I
Sbjct:   150 DHGGNMDCKEIKEGTTLLLPVNVPGALLALGDLHAAMGDGEIGVSG-VEVAGEVTVTVHI 208

Query:    71 IRGGMKEYLTPM 82
             I+G  K++  PM
Sbjct:   209 IKG--KKWPLPM 218

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2596 BA_2596 "acetamidase/formamidase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 138 (53.6 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query:    11 ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEI 70
             ++GGN D K +  G+ + LPV V GA L+ GD+H + GDGE+   G +E++G + +   I
Sbjct:   150 DHGGNMDCKEIKEGTTLLLPVNVPGALLALGDLHAAMGDGEIGVSG-VEVAGEVTVTVHI 208

Query:    71 IRGGMKEYLTPM 82
             I+G  K++  PM
Sbjct:   209 IKG--KKWPLPM 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.139   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       224   0.00099  112 3  11 22  0.41    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.74u 0.10s 18.84t   Elapsed:  00:00:01
  Total cpu time:  18.74u 0.10s 18.84t   Elapsed:  00:00:02
  Start:  Fri May 10 12:01:05 2013   End:  Fri May 10 12:01:07 2013

GO:0008150 "biological_process" evidence=ND

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam03069	316	pfam03069, FmdA_AmdA, Acetamidase/Formamidase fami	1e-82
COG2421	305	COG2421, COG2421, Predicted acetamidase/formamidas	1e-41

>gnl|CDD|202525 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family

 Score =  248 bits (635), Expect = 1e-82
 Identities = 102/181 (56%), Positives = 127/181 (70%), Gaps = 13/181 (7%)

Query: 5   RTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFL 64
            T   RENGGN DIKN++ GSK+YLPVFV+GA LS GD+H SQGDGEV FC AIEMSG +
Sbjct: 149 PTWNARENGGNLDIKNITEGSKVYLPVFVEGALLSIGDLHASQGDGEVCFC-AIEMSGEV 207

Query: 65  DLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDA 124
            +K E+I+GG++              P F+ GPVEPRF +WL+ EGISVDE+  +HYLDA
Sbjct: 208 TVKVEVIKGGLEWPGLET--------PPFDPGPVEPRFYDWLIVEGISVDEAIKEHYLDA 259

Query: 125 TVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQ 184
           T+AY+RA LN I+YL K+GY+ EQ YL LS  P  GR+S     PNA AT  +P  IF++
Sbjct: 260 TIAYRRACLNTIEYLEKYGYASEQAYLGLSQAPVPGRVS----IPNATATARIPGYIFEE 315

Query: 185 D 185
           D
Sbjct: 316 D 316

This family includes amidohydrolases of formamide EC:3.5.1.49 and acetamide. Methylophilus methylotrophus fmdA forms a homotrimer suggesting all the members of this family also do. Length = 316

>gnl|CDD|225279 COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]

 Score =  142 bits (361), Expect = 1e-41
 Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 31/186 (16%)

Query: 5   RTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFL 64
            T P RE+GGN DIK+L+ GS +YLPVFV+GA LS GD+H +QGDGEV    AIE+   +
Sbjct: 150 STGPPREHGGNLDIKDLTEGSTVYLPVFVEGALLSIGDLHAAQGDGEVCGT-AIEVPAEV 208

Query: 65  DLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDA 124
            +K E+I+    E   P+  TP +                 L+  G              
Sbjct: 209 TVKVELIKNLNLE--WPILETPDY-----------------LITLGS---------GETL 240

Query: 125 TVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFD 183
             A K+A+ N ID+L +  G ++E  Y+L S    + R+S +VD PN   +  +P  IF+
Sbjct: 241 EKAAKQALKNMIDFLRRRNGLTREDAYMLASLA-VDLRVSQLVDVPNKTVSALLPLDIFE 299

Query: 184 QDIRPK 189
           + +   
Sbjct: 300 ELVFLL 305

Length = 305

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
COG2421	305	Predicted acetamidase/formamidase [Energy producti	100.0
PF03069	369	FmdA_AmdA: Acetamidase/Formamidase family; InterPr	100.0
PF03069	369	FmdA_AmdA: Acetamidase/Formamidase family; InterPr	96.97

>COG2421 Predicted acetamidase/formamidase [Energy production and conversion]

Probab=100.00  E-value=5.3e-54  Score=387.88  Aligned_cols=153  Identities=41%  Similarity=0.629  Sum_probs=143.2

Q ss_pred             cccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCCCC
Q 027367            4 ARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMG   83 (224)
Q Consensus         4 ~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p~~   83 (224)
                      ++|+|||+||||||+|+|++||||||||||+||+||+||.||+|||||||+| |||++|++||||+|+|+..    .+  
T Consensus       149 l~t~~p~~~GGNlD~k~l~~GstvylPV~V~GAllsiGD~Ha~qGDGEV~~t-aiEv~~~vTv~~~l~K~~~----~~--  221 (305)
T COG2421         149 LSTGPPREHGGNLDIKDLTEGSTVYLPVFVEGALLSIGDLHAAQGDGEVCGT-AIEVPAEVTVKVELIKNLN----LE--  221 (305)
T ss_pred             CCCCCCCccCCcCChhhccCCCEEEEEEEEcCceeeecchhhhccCCceEEE-EEEeccEEEEEEEEecCCc----cc--
Confidence            5899999999999999999999999999999999999999999999999998 8999999999999999964    24  


Q ss_pred             CCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcccccCceE
Q 027367           84 PTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRI  162 (224)
Q Consensus        84 ~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~-~gls~~dAY~L~S~a~~d~rI  162 (224)
                            ||+++|+      ++|+++ |+..         |++.|+|+|+++||+||++ .||+++|||||||++ +|+||
T Consensus       222 ------~Pi~~t~------~~~~~~-g~~~---------~l~~A~k~a~~~~i~~l~~~~~~~~~~Ay~L~Sla-vd~rV  278 (305)
T COG2421         222 ------WPILETP------DYLITL-GSGE---------TLEKAAKQALKNMIDFLRRRNGLTREDAYMLASLA-VDLRV  278 (305)
T ss_pred             ------CceEeCC------CeEEEE-eccc---------cHHHHHHHHHHHHHHHHHHhcCCCHHHhhheeeEE-EeeEE
Confidence                  9999997      788886 7743         7899999999999999984 999999999999999 89999


Q ss_pred             eeecCCCCeEEEEEeecccccccC
Q 027367          163 SGIVDSPNAVATLAVPTAIFDQDI  186 (224)
Q Consensus       163 sQvVd~p~~tv~~~iPk~if~~~~  186 (224)
                      ||+||+||+++++.+|+++|.+.+
T Consensus       279 sq~V~~~n~~v~~~lP~~~f~~~~  302 (305)
T COG2421         279 SQLVDVPNKTVSALLPLDIFEELV  302 (305)
T ss_pred             EEEecCCccEEEEEeehHHhhhcc
Confidence            999999999999999999998764

>PF03069 FmdA_AmdA: Acetamidase/Formamidase family; InterPro: IPR004304 This family includes amidohydrolases of formamide 3

Probab=100.00  E-value=5.8e-49  Score=365.31  Aligned_cols=171  Identities=51%  Similarity=0.821  Sum_probs=128.5

Q ss_pred             CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (224)
Q Consensus         2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p   81 (224)
                      |+++|+||+.||||||+++|++||||||||||+|||||+||+||+|||||||+| |||+++++||||+|+|+...   +|
T Consensus       199 ~~~~t~~p~~~gGn~D~~~~~~G~~~~lPV~v~Ga~~~~GD~Ha~qGdgEv~~~-aie~~~~~~~~~~v~k~~~~---~p  274 (369)
T PF03069_consen  199 EALSTVPPGEHGGNMDIKELTAGSTLYLPVFVPGALLSVGDLHAAQGDGEVCGT-AIETSGEVTLRVDVIKGGLE---WP  274 (369)
T ss_dssp             H-BESSSEETTEEE---TTSSTTEEEEEE--STTEEEEEEEEESE--TBTTTSE-ECEE-EEEEEEEEEESSHCS---ST
T ss_pred             cccccccCCCccccccchhhcCCCEEEEEEEECCcEEEecccccccCCcceeeE-eeccccEEEEEEEEEeCCcC---Cc
Confidence            578999999999999999999999999999999999999999999999999998 79999999999999998521   11


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccccCce
Q 027367           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGR  161 (224)
Q Consensus        82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY~L~S~a~~d~r  161 (224)
                           ...+|++.++++.+.+.+|++++|.+.++..++.+.|+..|++.|+++||+|+.++||++.+||+++|++ +|++
T Consensus       275 -----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~~~i~~~~~~~l~~~~a~~~~S~~-vd~~  348 (369)
T PF03069_consen  275 -----RLETPIFDPGPIEPHFSEWIAVSGEDVDEALKQAVRDATEALRRALLNMIDYLDAYGLTSAQAYLLISQA-VDLR  348 (369)
T ss_dssp             -----EEESSCEE--SESSEEE-EEEEEESSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEEEES-SSSC
T ss_pred             -----cccCccccCCCccccchhhhhhcCcchhhhhhhhhHHHHHHHHHHHHhhhhHHHHcCCCHHHhheEcccc-ccCC
Confidence                 1114555556666666688888888776555555666677777777777777766777777777777776 6777


Q ss_pred             EeeecCCCCeEEEEEeeccccccc
Q 027367          162 ISGIVDSPNAVATLAVPTAIFDQD  185 (224)
Q Consensus       162 IsQvVd~p~~tv~~~iPk~if~~~  185 (224)
                         +||.||++++++||++||.+|
T Consensus       349 ---~Vdvpn~~v~~~lP~~If~~~  369 (369)
T PF03069_consen  349 ---IVDVPNYTVSARLPKDIFVED  369 (369)
T ss_dssp             ---S-STT-EEEEEEEEGGGCSS-
T ss_pred             ---eecccCcEEEEECChhhcccC
Confidence               899999999999999999875

5.1.49 from EC and acetamide 3.5.1 from EC. The formamidase from Methylophilus methylotrophus (Bacterium W3A1) forms a homotrimer suggesting that this may be a common property of other members of this family.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0008152 metabolic process; PDB: 3TKK_D 3B9T_D 2II1_C 2F4L_C 2WKN_C.

>PF03069 FmdA_AmdA: Acetamidase/Formamidase family; InterPro: IPR004304 This family includes amidohydrolases of formamide 3

Probab=96.97  E-value=0.0016  Score=61.61  Aligned_cols=117  Identities=23%  Similarity=0.138  Sum_probs=73.1

Q ss_pred             eCCeeeecC----CccccCCCcccccccceeecc---eEEEEEEEEeCCcccccCCCCCCCCCCCCeeeeCCCCCC-CCc
Q 027367           33 VDGANLSTG----DMHFSQGDGEVTFCGAIEMSG---FLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPR-FSE  104 (224)
Q Consensus        33 V~GAlls~G----D~HAaQGDGEV~~~gAiE~~~---~vtlrv~viK~~~~~~~~p~~~~~~~~~P~~et~p~~p~-~~~  104 (224)
                      ..|+-+|+-    -.-++.||+=-+. |-=|+++   ++..++++.=.    + .+.   . ..+|++++.-..+. ...
T Consensus       219 ~~G~~~~lPV~v~Ga~~~~GD~Ha~q-GdgEv~~~aie~~~~~~~~~~----v-~k~---~-~~~p~~~~p~~~~~~~~~  288 (369)
T PF03069_consen  219 TAGSTLYLPVFVPGALLSVGDLHAAQ-GDGEVCGTAIETSGEVTLRVD----V-IKG---G-LEWPRLETPIFDPGPIEP  288 (369)
T ss_dssp             STTEEEEEE--STTEEEEEEEEESE---TBTTTSEECEE-EEEEEEEE----E-ESS---H-CSSTEEESSCEE--SESS
T ss_pred             cCCCEEEEEEEECCcEEEeccccccc-CCcceeeEeeccccEEEEEEE----E-EeC---C-cCCccccCccccCCCccc
Confidence            445554442    2335667776554 3236554   45567766543    1 221   2 44899998422211 112


Q ss_pred             eEE-EEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-H--cCCCHHHHHHHhcccccCceEeeecCC
Q 027367          105 WLV-FEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-K--FGYSKEQVYLLLSCCPCEGRISGIVDS  168 (224)
Q Consensus       105 ~~~-~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~--~gls~~dAY~L~S~a~~d~rIsQvVd~  168 (224)
                      ++. ..-+    ++    .++++|+++|+++|..+++ +  .++++.++|+|.|.+ +++.+||+||.
T Consensus       289 ~~~~~~~~----~~----~~~~~a~~~~~~~~~~~~~~a~~~~i~~~~~~~l~~~~-a~~~~S~~vd~  347 (369)
T PF03069_consen  289 HFSEWIAV----SG----EDVDEALKQAVRDATEALRRALLNMIDYLDAYGLTSAQ-AYLLISQAVDL  347 (369)
T ss_dssp             EEE-EEEE----EE----SSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HEEEEEESSSS
T ss_pred             cchhhhhh----cC----cchhhhhhhhhHHHHHHHHHHHHhhhhHHHHcCCCHHH-hheEccccccC
Confidence            222 1111    12    4899999999999999997 4  799999999999998 89999999994

5.1.49 from EC and acetamide 3.5.1 from EC. The formamidase from Methylophilus methylotrophus (Bacterium W3A1) forms a homotrimer suggesting that this may be a common property of other members of this family.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0008152 metabolic process; PDB: 3TKK_D 3B9T_D 2II1_C 2F4L_C 2WKN_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2wkn_A	409	Gamma Lactamase From Delftia Acidovorans Length = 4		6e-65
2ii1_A	301	Crystal Structure Of Acetamidase (10172637) From Ba		2e-10
3tkk_A	301	Crystal Structure Analysis Of A Recombinant Predict		6e-10
2f4l_A	297	Crystal Structure Of A Putative Acetamidase (tm0119		4e-06
3b9t_A	484	Crystal Structure Of Predicted AcetamidaseFORMAMIDA		3e-04

>pdb|2WKN|A Chain A, Gamma Lactamase From Delftia Acidovorans Length = 409

Iteration: 1
 Score =  243 bits (620), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 143/189 (75%), Gaps = 8/189 (4%)
Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           E ART+P RE+GGNCDIK+LSRGS+++ PV+VDGA LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMA 269
Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           G++ +K  +I+GGM +Y           NPIF+  P+ P + ++L+FEGISVDE G QHY
Sbjct: 270 GWVHMKVSLIKGGMAKYGIK--------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHY 321
Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LD TVAY++A LNAI+YL KFGYS  Q Y LL   P +G ISG+VD PNA ATL +PT I
Sbjct: 322 LDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGHISGVVDVPNACATLWLPTEI 381
Query: 182 FDQDIRPKS 190
           FD DI P +
Sbjct: 382 FDFDINPTA 390

>pdb|2II1|A Chain A, Crystal Structure Of Acetamidase (10172637) From Bacillus Halodurans At 1.95 A Resolution Length = 301

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 12  NGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEII 71
           +GGN D K++  G+ +YLPV VDGA L+ GD+H + GDGE+  CG +E++G + LK  + 
Sbjct: 152 HGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAXGDGEILICG-VEIAGTVTLKVNVK 210
Query: 72  R 72
           +
Sbjct: 211 K 211

>pdb|3TKK|A Chain A, Crystal Structure Analysis Of A Recombinant Predicted Acetamidase Formamidase From The Thermophile Thermoanaerobacter Tengcongensis Length = 301

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 8   PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLK 67
           PG  +GGN D   ++ G+++Y PVFV+GA L+ GD+H   GDGEV   G +E++G + L+
Sbjct: 151 PGS-HGGNMDTTLIAEGAEVYFPVFVEGALLALGDLHALMGDGEVGVSG-VEVAGKVLLE 208
Query: 68  CEIIRG 73
            E+I+G
Sbjct: 209 VEVIKG 214

>pdb|2F4L|A Chain A, Crystal Structure Of A Putative Acetamidase (tm0119) From Thermotoga Maritima Msb8 At 2.50 A Resolution Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 9   GRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV 52
              +GGN D K ++    ++LPVF +GA L+ GD+H + GDGEV
Sbjct: 152 AHRHGGNXDTKEITENVTVHLPVFQEGALLALGDVHATXGDGEV 195

>pdb|3B9T|A Chain A, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE (YP_546212.1) From Methylobacillus Flagellatus Kt At 1.58 A Resolution Length = 484

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 6   TIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCG-AIEMS 61
           ++P    GGN D   + +G+  Y PV V G   S GD H SQGD E   CG AIE S
Sbjct: 306 SVPPSHFGGNIDNWRIGKGATXYYPVSVAGGLFSVGDPHASQGDSEX--CGTAIECS 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2wkn_A	409	Formamidase, gamma-lactamase; hydrolase, biocataly	2e-66
3b9t_A	484	Twin-arginine translocation pathway signal protei;	8e-43
2f4l_A	297	Acetamidase, putative; structural genomics, joint	1e-40
2ii1_A	301	Acetamidase; 10172637, structural genomics, joint	3e-39
3mjj_A	301	Predicted acetamidase/formamidase; beta/alpha stru	1e-38

>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans} Length = 409

 Score =  209 bits (532), Expect = 2e-66
 Identities = 114/190 (60%), Positives = 143/190 (75%), Gaps = 8/190 (4%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           E ART+P RE+GGNCDIK+LSRGS+++ PV+VDGA LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMA 269

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           G++ +K  +I+GGM +Y           NPIF+  P+ P + ++L+FEGISVDE G QHY
Sbjct: 270 GWVHMKVSLIKGGMAKYGIK--------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHY 321

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LD TVAY++A LNAI+YL KFGYS  Q Y LL   P +G ISG+VD PNA ATL +PT I
Sbjct: 322 LDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGHISGVVDVPNACATLWLPTEI 381

Query: 182 FDQDIRPKSS 191
           FD DI P + 
Sbjct: 382 FDFDINPTAE 391

>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT} Length = 484

 Score =  149 bits (377), Expect = 8e-43
 Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 11/186 (5%)

Query: 1   MEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
            +   ++P    GGN D   + +G+ +Y PV V G   S GD H SQGD E+     IE 
Sbjct: 301 ADLVNSVPPSHFGGNIDNWRIGKGATMYYPVSVAGGLFSVGDPHASQGDSEMCGTA-IEC 359

Query: 61  SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGP--VEPRFSEWLVFEGISVDE-SG 117
           S     +  + +        P  P      P+ E     V   FS       +  D  + 
Sbjct: 360 SLTGTFQFILHKKAD----LPGTPLADLQYPLLETQDEWVLHGFSYANYLAELGPDAQNS 415

Query: 118 GQHYLDATVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLA 176
                   +A K A      +L +    ++++   L+S    +  I+ +VD  N      
Sbjct: 416 IFSKSSLDLALKDAFRKMRHFLMQTQNLTEDEAVSLMSIG-VDFGITQVVD-GNWGVHAV 473

Query: 177 VPTAIF 182
           V   IF
Sbjct: 474 VKKGIF 479

>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1 Length = 297

 Score =  139 bits (351), Expect = 1e-40
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 33/183 (18%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
               T     +GGN D K ++    ++LPVF +GA L+ GD+H + GDGEV    A E+ 
Sbjct: 145 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVC-VSACEVP 203

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
             + ++ ++ +  +K    P+  T                   + +   +          
Sbjct: 204 AKVVVEIDVSKEEIK---WPVVETN----------------DAYYIIVSLP--------- 235

Query: 122 LDATVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTA 180
            D   A K      + ++ +         Y+L S    +  IS +V+ P   A   +P  
Sbjct: 236 -DIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDVGISQLVN-PAKTAKARIPKY 292

Query: 181 IFD 183
           IF 
Sbjct: 293 IFT 295

>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans} Length = 301

 Score =  136 bits (343), Expect = 3e-39
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 32/184 (17%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           E         +GGN D K++  G+ +YLPV VDGA L+ GD+H + GDGE+  CG +E++
Sbjct: 142 EPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILICG-VEIA 200

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           G + LK  + +  M     P   T                     +    +         
Sbjct: 201 GTVTLKVNVKKERMFPL--PALKTD-----------------THFMTIASAE-------- 233

Query: 122 LDATVAYKRAVLNAIDYL-SKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTA 180
                A  +A  N   +L ++   S E+  +LLS    +  +S IV+ P   A  ++   
Sbjct: 234 -TLDAAAVQATKNMATFLANRTALSIEEAGMLLSGA-GDLYVSQIVN-PLKTARFSLALH 290

Query: 181 IFDQ 184
            F++
Sbjct: 291 YFEK 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2wkn_A	409	Formamidase, gamma-lactamase; hydrolase, biocataly	100.0
2ii1_A	301	Acetamidase; 10172637, structural genomics, joint	100.0
2f4l_A	297	Acetamidase, putative; structural genomics, joint	100.0
3mjj_A	301	Predicted acetamidase/formamidase; beta/alpha stru	100.0
3b9t_A	484	Twin-arginine translocation pathway signal protei;	100.0

>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}

Probab=100.00  E-value=8.1e-64  Score=468.32  Aligned_cols=184  Identities=62%  Similarity=1.107  Sum_probs=172.1

Q ss_pred             CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (224)
Q Consensus         2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p   81 (224)
                      |++||+|||+||||||||+|++||||||||||+|||||+||+||+|||||||+|||||+++++||||+|+|+++.++.++
T Consensus       210 e~~~TvpP~~hGGNmDik~l~~GstlYLPV~V~GAlfsvGD~HaaQGDGEI~~cgAiE~s~~vtl~v~viK~~~~~~~l~  289 (409)
T 2wkn_A          210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMAGWVHMKVSLIKGGMAKYGIK  289 (409)
T ss_dssp             HCBCSSSEETTEESCCCTTSCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTEEEEEECCEEEEEEEEEETTHHHHTTCS
T ss_pred             ccccccCCCCccccccchhccCCcEEEEEEEecCceEeccCchhccCCCccccceeeecceEEEEEEEEEcCcccccCCC
Confidence            57899999999999999999999999999999999999999999999999999989999999999999999965433334


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccccCce
Q 027367           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGR  161 (224)
Q Consensus        82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY~L~S~a~~d~r  161 (224)
                              +|++|+++++|++++|++++|++.|++|+|+|||+++|+|+|+++||+||+++|||++|||+|||+|++|+|
T Consensus       290 --------~P~~e~~~~~p~~~~~li~~G~~~d~~g~~~~ld~~~A~r~A~~~~i~~L~~~Gls~~eAy~LlS~a~~d~r  361 (409)
T 2wkn_A          290 --------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHYLDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGH  361 (409)
T ss_dssp             --------SCEEECCSCCBCCCCEEEEEEESBCTTCCBCSSCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHSCCEEE
T ss_pred             --------CCeecCCCCCCccCcEEEEEeeccccccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCccccccE
Confidence                    899999988888889988789999999999999999999999999999999999999999999999757999


Q ss_pred             EeeecCCCCeEEEEEeecccccccCCCCCCCC
Q 027367          162 ISGIVDSPNAVATLAVPTAIFDQDIRPKSSKV  193 (224)
Q Consensus       162 IsQvVd~p~~tv~~~iPk~if~~~~~~~~~~~  193 (224)
                      ||||||.||+++++.|||+||+.++||++.++
T Consensus       362 IsqVVD~pn~~v~~~lP~~if~~~~~p~~~~~  393 (409)
T 2wkn_A          362 ISGVVDVPNACATLWLPTEIFDFDINPTAEGP  393 (409)
T ss_dssp             EEESCSTTCCEEEEEEEGGGBSSCCSCCTTCC
T ss_pred             eccEecCCCcEEEEEeEHHHcccccCCCCCCC
Confidence            99999999999999999999999999985444

>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}

Probab=100.00  E-value=1e-57  Score=412.85  Aligned_cols=152  Identities=30%  Similarity=0.507  Sum_probs=142.4

Q ss_pred             CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (224)
Q Consensus         2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p   81 (224)
                      |+++|+||++||||||+|+|++||||||||||+|||||+||+||+|||||||+| |||+++++||||+|+|+..    ++
T Consensus       142 ~~~~t~pP~~~GGNmD~~~l~~GstlylPV~v~GAl~s~GD~Ha~QGDGEv~~t-aiE~~~~vt~~v~viK~~~----l~  216 (301)
T 2ii1_A          142 EPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILIC-GVEIAGTVTLKVNVKKERM----FP  216 (301)
T ss_dssp             SCEETTSCBTTEEECCCTTCSTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CSEECEEEEEEEEEESSCC----SC
T ss_pred             CCcCcCCCCccccccchhhhcCCCEEEEEEEeCCceEEecCceeccCCCcceee-EEEeeeEEEEEEEEECCCC----CC
Confidence            678999999999999999999999999999999999999999999999999998 5999999999999999842    23


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHhcccccCc
Q 027367           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG  160 (224)
Q Consensus        82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY~L~S~a~~d~  160 (224)
                              +|++|++      +.|+++ |++.         |+++|+|+|+++||+||+ ++|||++|||+|||++ +|+
T Consensus       217 --------~P~~et~------~~~~~~-G~~~---------dl~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~  271 (301)
T 2ii1_A          217 --------LPALKTD------THFMTI-ASAE---------TLDAAAVQATKNMATFLANRTALSIEEAGMLLSGA-GDL  271 (301)
T ss_dssp             --------SSEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH-CEE
T ss_pred             --------CCEEECC------CcEEEE-EECC---------CHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhh-cCc
Confidence                    9999997      777775 8875         799999999999999998 6999999999999999 899


Q ss_pred             eEeeecCCCCeEEEEEeecccccc
Q 027367          161 RISGIVDSPNAVATLAVPTAIFDQ  184 (224)
Q Consensus       161 rIsQvVd~p~~tv~~~iPk~if~~  184 (224)
                      +|||||| ||+++++.|||++|++
T Consensus       272 ~IsqvVd-p~~~v~~~ipk~if~~  294 (301)
T 2ii1_A          272 YVSQIVN-PLKTARFSLALHYFEK  294 (301)
T ss_dssp             EEEESSS-SSEEEEEEEEHHHHHH
T ss_pred             EEEEecC-CCeEEEEEEEHHHhhh
Confidence            9999999 9999999999999964

>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1

Probab=100.00  E-value=1.9e-57  Score=410.56  Aligned_cols=151  Identities=26%  Similarity=0.399  Sum_probs=141.5

Q ss_pred             CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (224)
Q Consensus         2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p   81 (224)
                      |+++|+||++||||||+|+|++||||||||||+|||||+||+||+|||||||+| |||+++++||||+|+|+ .  +  +
T Consensus       145 ~~~~t~pP~~~GGNmD~~~l~~GstlylPV~V~GAl~s~GD~HaaQGDGEv~~t-aiE~~~~vtl~v~viK~-~--l--~  218 (297)
T 2f4l_A          145 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVCVS-ACEVPAKVVVEIDVSKE-E--I--K  218 (297)
T ss_dssp             SEEETTSEETTEEECCCTTCCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECC-C--C--S
T ss_pred             cCcCCCCCCccccccchhhhcCCCEEEEEEEeCCceEEecCceeccCCCcccee-EEEeeeEEEEEEEEeCC-C--C--C
Confidence            678999999999999999999999999999999999999999999999999998 59999999999999998 3  2  3


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHhcccccCc
Q 027367           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG  160 (224)
Q Consensus        82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY~L~S~a~~d~  160 (224)
                              +|++|++      +.|+++ |++.         |+++|+|+|+++||+||+ ++|||++|||+|||++ +|+
T Consensus       219 --------~P~~et~------~~~~~~-G~~~---------dl~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~  273 (297)
T 2f4l_A          219 --------WPVVETN------DAYYII-VSLP---------DIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDV  273 (297)
T ss_dssp             --------SCEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CEE
T ss_pred             --------CCEEECC------CcEEEE-EECC---------CHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhh-cCc
Confidence                    9999997      677775 8876         799999999999999998 6999999999999999 899


Q ss_pred             eEeeecCCCCeEEEEEeecccccc
Q 027367          161 RISGIVDSPNAVATLAVPTAIFDQ  184 (224)
Q Consensus       161 rIsQvVd~p~~tv~~~iPk~if~~  184 (224)
                      +|||||| ||+++++.|||++|++
T Consensus       274 ~IsqvVd-pn~~v~~~ipk~if~~  296 (297)
T 2f4l_A          274 GISQLVN-PAKTAKARIPKYIFTG  296 (297)
T ss_dssp             EEEESSS-SSEEEEEEEEGGGTC-
T ss_pred             EEEEEcC-CCeEEEEEEEHHHccC
Confidence            9999999 9999999999999974

>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}

Probab=100.00  E-value=7.2e-55  Score=414.69  Aligned_cols=169  Identities=26%  Similarity=0.318  Sum_probs=145.4

Q ss_pred             CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (224)
Q Consensus         2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p   81 (224)
                      |.++|+||++||||||||+|++||||||||||+|||||+||+||+|||||||+| |||+++++||||+|+|+.... . +
T Consensus       302 ~~~~TvpP~~hGGNmDik~L~~GStlYLPV~V~GAlfsvGD~HaaQGDGEvcGT-AIE~s~~vtl~v~ViK~~~~~-g-~  378 (484)
T 3b9t_A          302 DLVNSVPPSHFGGNIDNWRIGKGATMYYPVSVAGGLFSVGDPHASQGDSEMCGT-AIECSLTGTFQFILHKKADLP-G-T  378 (484)
T ss_dssp             SSEESSSCBTTEEECCCTTCSTTCEEEEECCSTTEEEEEEEEEEECCTBCTTSC-CEECCEEEEEEEEEECGGGCT-T-S
T ss_pred             CCCCCCCCCCcCCccchhhhcCCcEEEEEEEecCceEeccCcccccCCCcccce-EEeeceEEEEEEEEEcCCccc-c-c
Confidence            678999999999999999999999999999999999999999999999999987 799999999999999985410 0 0


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCC----CCCcc------cCCHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Q 027367           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDE----SGGQH------YLDATVAYKRAVLNAIDYLS-KFGYSKEQVY  150 (224)
Q Consensus        82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~----~g~~~------~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY  150 (224)
                      .  .....+|++||+      ++|+++ |+++++    .|++.      ..||++|+|+|+++||+||+ ++|||++|||
T Consensus       379 ~--~~~l~~P~~et~------~~~i~~-G~s~~~~l~~~g~~~~~~i~~~~~Ld~A~r~A~~~mi~~L~~~~Gls~~eAy  449 (484)
T 3b9t_A          379 P--LADLQYPLLETQ------DEWVLH-GFSYANYLAELGPDAQNSIFSKSSLDLALKDAFRKMRHFLMQTQNLTEDEAV  449 (484)
T ss_dssp             T--TTTCCSCEEECS------SEEEEE-EESSTTHHHHHGGGHHHHHHHHCCHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             c--ccCCCCCccCCC------CeEEEE-EeccccchhhcccccccccccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            0  001128999997      899975 998653    23210      12788999999999999997 7999999999


Q ss_pred             HHhcccccCceEeeecCCCCeEEEEEeecccccc
Q 027367          151 LLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQ  184 (224)
Q Consensus       151 ~L~S~a~~d~rIsQvVd~p~~tv~~~iPk~if~~  184 (224)
                      +|||++ +|++|||||| +|++|++.|||++|++
T Consensus       450 ~LlS~a-~d~~IsQVVD-~n~~v~~~ipk~if~~  481 (484)
T 3b9t_A          450 SLMSIG-VDFGITQVVD-GNWGVHAVVKKGIFPG  481 (484)
T ss_dssp             HHHHHS-CEEEEEESSS-SSCEEEEEEEGGGCCC
T ss_pred             HHHHhh-cCceEEEEeC-CCeEEEEEEEHHHccc
Confidence            999999 8999999999 6999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d2f4la1	283	b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Th	6e-39

>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Thermotoga maritima [TaxId: 2336]} Length = 283

class: All beta proteins
fold: CUB-like
superfamily: Acetamidase/Formamidase-like
family: Acetamidase/Formamidase-like
domain: Putative acetamidase TM0119
species: Thermotoga maritima [TaxId: 2336]

 Score =  133 bits (336), Expect = 6e-39
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 33/182 (18%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
               T     +GGN D K ++    ++LPVF +GA L+ GD+H + GDGEV    A E+ 
Sbjct: 133 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVC-VSACEVP 191

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
             + ++ ++ +  +K    P+  T      I  +  +E                      
Sbjct: 192 AKVVVEIDVSKEEIK---WPVVETNDAYYIIVSLPDIE---------------------- 226

Query: 122 LDATVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTA 180
                A K      + ++ +         Y+L S    +  IS +V+ P   A   +P  
Sbjct: 227 ----EALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDVGISQLVN-PAKTAKARIPKY 280

Query: 181 IF 182
           IF
Sbjct: 281 IF 282

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d2f4la1	283	Putative acetamidase TM0119 {Thermotoga maritima [	100.0

>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: CUB-like
superfamily: Acetamidase/Formamidase-like
family: Acetamidase/Formamidase-like
domain: Putative acetamidase TM0119
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.6e-56  Score=400.05  Aligned_cols=150  Identities=26%  Similarity=0.413  Sum_probs=140.9

Q ss_pred             CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (224)
Q Consensus         2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p   81 (224)
                      +.++|+||++||||||+|+|++||||||||||+|||||+||+||+|||||||++ |||+++++||||+|+|+..     +
T Consensus       133 g~~~t~~p~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEv~gt-aiE~~~~vtl~v~v~K~~~-----~  206 (283)
T d2f4la1         133 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVCVS-ACEVPAKVVVEIDVSKEEI-----K  206 (283)
T ss_dssp             SEEETTSEETTEEECCCTTCCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECCCC-----S
T ss_pred             ccccccCccccccccCchhhcCCCEEEEeeecCCcEEEeccceeecCCCceeeE-EEeeeeEEEEEEEEccCcc-----c
Confidence            457899999999999999999999999999999999999999999999999986 7999999999999999842     3


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHhcccccCc
Q 027367           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG  160 (224)
Q Consensus        82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY~L~S~a~~d~  160 (224)
                              ||++|++      ++|+++ |+..         ||++|+|+|+++||+||+ ++||+++|||+|||++ +|+
T Consensus       207 --------~P~~et~------~~~~~~-g~~~---------~L~~A~r~A~~~mi~~l~~~~gl~~~eAy~L~S~a-~d~  261 (283)
T d2f4la1         207 --------WPVVETN------DAYYII-VSLP---------DIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDV  261 (283)
T ss_dssp             --------SCEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CEE
T ss_pred             --------CCcccCC------CcEEEe-CCCC---------CHHHHHHHHHHHHHHHHHHhhCcCHHHHHHHhhhe-eCc
Confidence                    9999997      889987 7754         799999999999999997 6999999999999998 899


Q ss_pred             eEeeecCCCCeEEEEEeeccccc
Q 027367          161 RISGIVDSPNAVATLAVPTAIFD  183 (224)
Q Consensus       161 rIsQvVd~p~~tv~~~iPk~if~  183 (224)
                      ||||+|| |+++|++.|||+||.
T Consensus       262 ~I~qvVd-p~~~v~~~ipk~ift  283 (283)
T d2f4la1         262 GISQLVN-PAKTAKARIPKYIFT  283 (283)
T ss_dssp             EEEESSS-SSEEEEEEEEGGGTC
T ss_pred             eeeEEEC-CCeEEEEEEEHHHCC
Confidence            9999999 899999999999994