Citrus Sinensis ID: 027376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MLPFSLSSSPSTRSFSLYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI
Secondary Structure (PSIPRED)
cccEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccEEHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEcccccccHEEEcccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mlpfslssspstrsfslynninqpiltrqtklfgsrsfssswssfafnplrlsvnHEEMKMVTKRksrgfsavcyaspltarnLQWISTISSTVLMLakgtavpksflvplfalqapaDVISWIKGEYGIWAAFLALLVRLFFfipgelelPFMALLLVIVAPhqvltlrgtqQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI
Flexible Loop (DISEMBL)
mlpfslssspstrsfslynninQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI
Low Complexity Region (SEG)
MlpfslssspstrsfslYNNINQPILTRQTKLfgsrsfssswssfafNPLRLSVNHEEMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWaaflallvrlfffIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI
Disordered region (IsUnstruct)
****************LYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFL*
Disordered Region (DISOPRED)
**********************************************FNPLR**V******M*TKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI
Disordered Region (DISEMBL)
************RSFSLYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI
Disordered Region (DISPRO)
********S*STRSFSL**NINQ*********************F*FNPLRLSV*HEEMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPFSLSSSPSTRSFSLYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
F4I1G5	226	Cold-regulated 413 inner	yes	no	0.821	0.814	0.645	5e-63
Q94AL8	225	Cold-regulated 413 inner	no	no	0.919	0.915	0.560	6e-63
Q9SVL6	203	Cold-regulated 413 plasma	no	no	0.705	0.778	0.321	2e-12
O23164	202	Cold-regulated 413 plasma	no	no	0.589	0.653	0.328	3e-12
Q9XIM7	197	Cold-regulated 413 plasma	no	no	0.589	0.670	0.285	8e-06
O64834	189	Cold-regulated 413 plasma	no	no	0.535	0.634	0.266	0.0006

>sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1

 Score =  240 bits (613), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 149/189 (78%), Gaps = 5/189 (2%)

Query: 41  SWSSFAFNPLRLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTARNLQWISTISSTVL 95
           S S   FNPLRLS + +    V+    KR+ RG S VCYA+P L+  NLQWISTIS   L
Sbjct: 38  STSVVCFNPLRLSADRQRTATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVAL 97

Query: 96  MLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMA 155
           M A+GT + KSF+VPLFALQAP  ++SW+KGEYGIWAAFLALL RLFF  P ELELPF+A
Sbjct: 98  MFARGTGIHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIA 157

Query: 156 LLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICI 215
           LLLVIVAP+QV+++RG Q+GAI+SL I+ +LAFQHFSRAG L+KAF+Q SV+AT+AII +
Sbjct: 158 LLLVIVAPYQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGV 217

Query: 216 TALSCLFLI 224
           T +S LFLI
Sbjct: 218 TVVSFLFLI 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1

 Score =  240 bits (612), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/216 (56%), Positives = 162/216 (75%), Gaps = 10/216 (4%)

Query: 11  STRSFSLYNN---INQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVT---- 63
           S+R  SL++    ++  + +R + L G        S   FNPLRLS + +    V+    
Sbjct: 8   SSRIVSLHHQKPFLSLKLRSRPSDLSG---LGRHTSPVCFNPLRLSGDRQRTATVSTRVE 64

Query: 64  KRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISW 123
           KR+ RG S VCYA+P++A +LQWISTIS   LMLA+GT + KS +VPLFAL AP+ +++W
Sbjct: 65  KRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFALHAPSSIVAW 124

Query: 124 IKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIA 183
           IKGEYG+WAAFLAL+ RLFF  PGELELPF+ALLLVIVAP+QV+ +RG Q+GAII++ I+
Sbjct: 125 IKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQEGAIIAIAIS 184

Query: 184 GYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALS 219
           G+LAFQHFSRAG+L KA+E+GSV+AT+AII +T +S
Sbjct: 185 GFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVS 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 13/171 (7%)

Query: 55  NHEEMKMVTKRKSRGFSAVCYASPLT--ARNLQWISTISSTVLMLAK----GTAVPKSFL 108
           + EE+K+  K+    FS V     L      L+++++ ++  L++       T +  S L
Sbjct: 23  DMEELKVAAKKL---FSDVSKLGGLGFGVSFLKFLASFAAIYLLILDRTNWKTKMLTSLL 79

Query: 109 VPLFALQAPADVISWIKGEYGIWAAFLALLVRLFF--FIPGELELPFMALLLVIVAPHQV 166
           +P   L  P+ + +++ G+ G W AF+A+++RLFF    P  LE+P   +LL++V+PH +
Sbjct: 80  IPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLVVSPHFL 139

Query: 167 L-TLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVA-TLAIICI 215
              +RGT  G +ISL I  YL  +H   +G  R +F Q   V+ TL II +
Sbjct: 140 AHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRGVSNTLGIILL 190

Arabidopsis thaliana (taxid: 3702)

>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana GN=At4g37220 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 8/140 (5%)

Query: 84  LQWISTISSTVLMLAK----GTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLV 139
           LQW ++I +  L++       T +  + LVP      P+ +  +  G++G W A +A++V
Sbjct: 50  LQWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIV 109

Query: 140 RLFF--FIPGELELPFMALLLVIVAPHQV-LTLRGTQQGAIISLVIAGYLAFQHFSRAGN 196
           RLFF    P  LE+P   +L+V+V+P  +  TLR +  GA+I LVIA YL  +H   +G 
Sbjct: 110 RLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGG 169

Query: 197 LRKAFEQGSVVA-TLAIICI 215
            + +F Q + ++ T+ I+ +
Sbjct: 170 FKNSFTQKNGISNTIGIVAL 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana GN=COR413PM1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 8/140 (5%)

Query: 84  LQWISTISSTVLMLAK----GTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLV 139
           L+W+++I++  L++       T +  S L+P      P+ +    +GE G W AF+A++V
Sbjct: 48  LEWVASIAAIYLLVLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVV 107

Query: 140 RLFFFIPGELELPFMALLLVIVAPHQVL---TLRGTQQGAIISLVIAGYLAFQHFSRAGN 196
           +LFF       L     L+++      L   T R +  G  I L I  YL  +H   +G 
Sbjct: 108 QLFFPKHAREYLELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGG 167

Query: 197 LRKAFEQGSVVA-TLAIICI 215
            R AF + + ++ T+ IIC+
Sbjct: 168 FRNAFTKANGISNTVGIICL 187

Arabidopsis thaliana (taxid: 3702)

>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis thaliana GN=At2g23680 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 19/139 (13%)

Query: 84  LQWISTISSTVLMLAKGTA------VPKSFLVPLFALQAPADVISWIKGEYGIWAAFLAL 137
           L+W+++I +  LM+   T       +  S L P      P  +   ++   G W A L +
Sbjct: 31  LRWLASIVAVFLMILDQTKWKYSNNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTV 90

Query: 138 LVRLFFFIPGE----LELPFMALLLVIVAPHQV-----LTLRGTQQGAIISLVIAGYLAF 188
           ++RL  F+P      LE+P   +LL++V P  +       LR T  G  + L+ + YL  
Sbjct: 91  ILRL--FLPNHFHESLEIPGATILLIVVTPSDIGAIFRDDLRYT--GGDVCLLTSFYLIN 146

Query: 189 QHFSRAGNLRKAFEQGSVV 207
           +H    G ++ +F Q   V
Sbjct: 147 KHTKACGGIKNSFTQKDKV 165


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,618,419
Number of Sequences: 539616
Number of extensions: 2556356
Number of successful extensions: 8088
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8073
Number of HSP's gapped (non-prelim): 19
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
449459334	224	PREDICTED: cold-regulated 413 inner memb	0.897	0.897	0.632	1e-71
225463388	210	PREDICTED: uncharacterized protein LOC10	0.928	0.990	0.654	1e-70
224116758	229	predicted protein [Populus trichocarpa]	0.924	0.903	0.640	3e-63
255557429	223	COR414-TM1, putative [Ricinus communis]	0.808	0.811	0.726	1e-61
18397074	226	cold regulated 314 thylakoid membrane 2	0.821	0.814	0.645	3e-61
18397077	225	cold regulated 314 inner membrane 1 [Ara	0.919	0.915	0.560	3e-61
19424007	219	unknown protein [Arabidopsis thaliana]	0.821	0.840	0.645	4e-61
297851356	482	predicted protein [Arabidopsis lyrata su	0.843	0.392	0.619	1e-60
12323527	484	unknown protein; 31966-27882 [Arabidopsi	0.906	0.419	0.563	2e-60
42571691	183	cold regulated 314 thylakoid membrane 2	0.776	0.950	0.648	3e-58

>gi|449459334|ref|XP_004147401.1| PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic-like [Cucumis sativus] gi|449500602|ref|XP_004161143.1| PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic-like [Cucumis sativus]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/223 (63%), Positives = 167/223 (74%), Gaps = 22/223 (9%)

Query: 2   LPFSLSSSPSTRSFSLYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKM 61
           +P SL SSP     SL +   Q                   SS  +NPLR +V  E    
Sbjct: 24  VPLSLRSSPPNAKLSLNSAAKQ-------------------SSICYNPLRFAVGSEG--- 61

Query: 62  VTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVI 121
           + K+KSRG SAVCYA P+  R LQWISTISS VLMLAKGT + KSF+VPLFALQAPA VI
Sbjct: 62  INKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPASVI 121

Query: 122 SWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLV 181
           SWIKGEYGIW+AFLALLVRLFFFIPGELE+PF++LLLVIVAP+QV  LRGTQ+G IISL+
Sbjct: 122 SWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCIISLL 181

Query: 182 IAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI 224
           IA YLAFQHFSRAG+ ++AF+Q S+VAT+A++CITA+S LF+I
Sbjct: 182 IAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463388|ref|XP_002273366.1| PREDICTED: uncharacterized protein LOC100265908 [Vitis vinifera] gi|297740634|emb|CBI30816.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/220 (65%), Positives = 173/220 (78%), Gaps = 12/220 (5%)

Query: 5   SLSSSPSTRSFSLYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVTK 64
           SLS S +T +FSL++   +P L+ Q+    ++ FS       F+ LR   NH    +V K
Sbjct: 3   SLSISTAT-AFSLHS---KPFLSLQSPPHQAKLFS-----LRFHHLRFQGNH---GVVMK 50

Query: 65  RKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWI 124
           +  RGF AVCY++PLT  NLQW+ T+SS VLML++GTA  KSFLVPLFALQAP  +ISWI
Sbjct: 51  KNRRGFGAVCYSAPLTPPNLQWVCTVSSAVLMLSRGTAAQKSFLVPLFALQAPTSIISWI 110

Query: 125 KGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAG 184
           KGEYG W AFLALLVRLFFFIPGELELPF+ALLLVIVAP+QV+ LRGTQ GAI+SL+IAG
Sbjct: 111 KGEYGAWTAFLALLVRLFFFIPGELELPFVALLLVIVAPYQVMNLRGTQMGAIVSLLIAG 170

Query: 185 YLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI 224
           YLAFQHFSRAG+L++AF QGS+VATLAIICITA+SCL  I
Sbjct: 171 YLAFQHFSRAGSLQRAFNQGSIVATLAIICITAVSCLLFI 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116758|ref|XP_002331870.1| predicted protein [Populus trichocarpa] gi|222875388|gb|EEF12519.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/220 (64%), Positives = 165/220 (75%), Gaps = 13/220 (5%)

Query: 7   SSSPSTRSFSLYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVTKRK 66
           S S   +  S+ N +  P +T           SSS+++F  NPLRLS+   EM M  KRK
Sbjct: 21  SGSKKKQFLSIQNPLRSPTVT---------PLSSSFTTF--NPLRLSIKSNEMMMKIKRK 69

Query: 67  S--RGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWI 124
              RGF AVC+A  LT  +L WIS +SS VL+LAKGTAV KSFLVPLFALQAP  VISWI
Sbjct: 70  ESGRGFGAVCHAGSLTTPSLPWISALSSAVLVLAKGTAVQKSFLVPLFALQAPPAVISWI 129

Query: 125 KGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAG 184
           KGEYGIW AFLALL RLFFFIPGELELPFMALLLVIVAP+QV+ +RG Q+GAI+ LVIA 
Sbjct: 130 KGEYGIWTAFLALLFRLFFFIPGELELPFMALLLVIVAPYQVMNIRGKQEGAIVGLVIAA 189

Query: 185 YLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI 224
           YLAFQHFSR GN+++AFEQGSVVAT+A++C+   SCL LI
Sbjct: 190 YLAFQHFSRIGNMQRAFEQGSVVATIAVVCVVVTSCLLLI 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557429|ref|XP_002519745.1| COR414-TM1, putative [Ricinus communis] gi|223541162|gb|EEF42718.1| COR414-TM1, putative [Ricinus communis]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/183 (72%), Positives = 154/183 (84%), Gaps = 2/183 (1%)

Query: 43  SSFAFNPLR-LSVNH-EEMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKG 100
           SS  FNPLR   +N     +M  ++K R F A+CYA PL+  NLQWISTISS +LM+AKG
Sbjct: 40  SSITFNPLRSFCINKGNNDRMTLQKKVRRFGALCYAGPLSTSNLQWISTISSAILMVAKG 99

Query: 101 TAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVI 160
           TA+ KSF+VPL ALQAP+ VISW+KGEYGIW AFLALLVRLFFFIPGELELPF+ALLLV+
Sbjct: 100 TAIQKSFVVPLLALQAPSTVISWMKGEYGIWTAFLALLVRLFFFIPGELELPFLALLLVL 159

Query: 161 VAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSC 220
           VAP+QV  LRGTQ+GA I L IAGYLAFQHF+RAGNL+KAFEQGS+VATLAIIC+T +SC
Sbjct: 160 VAPYQVTNLRGTQEGATIGLAIAGYLAFQHFTRAGNLQKAFEQGSIVATLAIICVTVISC 219

Query: 221 LFL 223
           LFL
Sbjct: 220 LFL 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397074|ref|NP_564327.1| cold regulated 314 thylakoid membrane 2 [Arabidopsis thaliana] gi|426019472|sp|F4I1G5.1|CRIM2_ARATH RecName: Full=Cold-regulated 413 inner membrane protein 2, chloroplastic; Short=AtCOR413-IM2; AltName: Full=Cold-regulated 413 thylakoid membrane 2; Short=AtCOR413-TM2; Flags: Precursor gi|332192959|gb|AEE31080.1| cold regulated 314 thylakoid membrane 2 [Arabidopsis thaliana]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 149/189 (78%), Gaps = 5/189 (2%)

Query: 41  SWSSFAFNPLRLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTARNLQWISTISSTVL 95
           S S   FNPLRLS + +    V+    KR+ RG S VCYA+P L+  NLQWISTIS   L
Sbjct: 38  STSVVCFNPLRLSADRQRTATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVAL 97

Query: 96  MLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMA 155
           M A+GT + KSF+VPLFALQAP  ++SW+KGEYGIWAAFLALL RLFF  P ELELPF+A
Sbjct: 98  MFARGTGIHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIA 157

Query: 156 LLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICI 215
           LLLVIVAP+QV+++RG Q+GAI+SL I+ +LAFQHFSRAG L+KAF+Q SV+AT+AII +
Sbjct: 158 LLLVIVAPYQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGV 217

Query: 216 TALSCLFLI 224
           T +S LFLI
Sbjct: 218 TVVSFLFLI 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397077|ref|NP_564328.1| cold regulated 314 inner membrane 1 [Arabidopsis thaliana] gi|75164996|sp|Q94AL8.1|CRIM1_ARATH RecName: Full=Cold-regulated 413 inner membrane protein 1, chloroplastic; Short=AtCOR413-IM1; AltName: Full=Cold-regulated 413 thylakoid membrane 1; Short=AtCOR413-TM1; Flags: Precursor gi|15028239|gb|AAK76616.1| unknown protein [Arabidopsis thaliana] gi|21592634|gb|AAM64583.1| unknown [Arabidopsis thaliana] gi|22136822|gb|AAM91755.1| unknown protein [Arabidopsis thaliana] gi|26452616|dbj|BAC43391.1| unknown protein [Arabidopsis thaliana] gi|332192960|gb|AEE31081.1| cold regulated 314 inner membrane 1 [Arabidopsis thaliana]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/216 (56%), Positives = 162/216 (75%), Gaps = 10/216 (4%)

Query: 11  STRSFSLYNN---INQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVT---- 63
           S+R  SL++    ++  + +R + L G        S   FNPLRLS + +    V+    
Sbjct: 8   SSRIVSLHHQKPFLSLKLRSRPSDLSG---LGRHTSPVCFNPLRLSGDRQRTATVSTRVE 64

Query: 64  KRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISW 123
           KR+ RG S VCYA+P++A +LQWISTIS   LMLA+GT + KS +VPLFAL AP+ +++W
Sbjct: 65  KRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFALHAPSSIVAW 124

Query: 124 IKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIA 183
           IKGEYG+WAAFLAL+ RLFF  PGELELPF+ALLLVIVAP+QV+ +RG Q+GAII++ I+
Sbjct: 125 IKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQEGAIIAIAIS 184

Query: 184 GYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALS 219
           G+LAFQHFSRAG+L KA+E+GSV+AT+AII +T +S
Sbjct: 185 GFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVS 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19424007|gb|AAL87293.1| unknown protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 149/189 (78%), Gaps = 5/189 (2%)

Query: 41  SWSSFAFNPLRLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTARNLQWISTISSTVL 95
           S S   FNPLRLS + +    V+    KR+ RG S VCYA+P L+  NLQWISTIS   L
Sbjct: 31  STSVVCFNPLRLSADRQRTATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVAL 90

Query: 96  MLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMA 155
           M A+GT + KSF+VPLFALQAP  ++SW+KGEYGIWAAFLALL RLFF  P ELELPF+A
Sbjct: 91  MFARGTGIHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIA 150

Query: 156 LLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICI 215
           LLLVIVAP+QV+++RG Q+GAI+SL I+ +LAFQHFSRAG L+KAF+Q SV+AT+AII +
Sbjct: 151 LLLVIVAPYQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGV 210

Query: 216 TALSCLFLI 224
           T +S LFLI
Sbjct: 211 TVVSFLFLI 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851356|ref|XP_002893559.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297339401|gb|EFH69818.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 153/197 (77%), Gaps = 8/197 (4%)

Query: 28  RQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTAR 82
           R + L G      S S+  FNPLRLS + +    V+    KR+ RG S VCYA+P L+ +
Sbjct: 226 RSSDLSG---LGHSTSAVCFNPLRLSADRQPTATVSTRVEKRRKRGSSVVCYATPMLSVQ 282

Query: 83  NLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLF 142
           NLQWISTIS   LM A+GT + KSF+VPLFALQAP  +ISW+KGEYGIWAAFLALL RLF
Sbjct: 283 NLQWISTISCVALMFARGTGIHKSFVVPLFALQAPLGIISWMKGEYGIWAAFLALLTRLF 342

Query: 143 FFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFE 202
           F  PGELELPF+ALLLVIVAP+QV+++RG Q+GAI+SL I+ +LAFQHFSRAG+L+KAF+
Sbjct: 343 FAFPGELELPFIALLLVIVAPYQVMSIRGKQEGAILSLAISCFLAFQHFSRAGSLQKAFD 402

Query: 203 QGSVVATLAIICITALS 219
           Q SV+AT+AI+ +T +S
Sbjct: 403 QSSVLATVAIVGVTVVS 419

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323527|gb|AAG51739.1|AC068667_18 unknown protein; 31966-27882 [Arabidopsis thaliana]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/213 (56%), Positives = 160/213 (75%), Gaps = 10/213 (4%)

Query: 11  STRSFSLYNN---INQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVT---- 63
           S+R  SL++    ++  + +R + L G        S   FNPLRLS + +    V+    
Sbjct: 8   SSRIVSLHHQKPFLSLKLRSRPSDLSG---LGRHTSPVCFNPLRLSGDRQRTATVSTRVE 64

Query: 64  KRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISW 123
           KR+ RG S VCYA+P++A +LQWISTIS   LMLA+GT + KS +VPLFAL AP+ +++W
Sbjct: 65  KRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFALHAPSSIVAW 124

Query: 124 IKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIA 183
           IKGEYG+WAAFLAL+ RLFF  PGELELPF+ALLLVIVAP+QV+ +RG Q+GAII++ I+
Sbjct: 125 IKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQEGAIIAIAIS 184

Query: 184 GYLAFQHFSRAGNLRKAFEQGSVVATLAIICIT 216
           G+LAFQHFSRAG+L KA+E+GSV+AT+AII +T
Sbjct: 185 GFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVT 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571691|ref|NP_973936.1| cold regulated 314 thylakoid membrane 2 [Arabidopsis thaliana] gi|332192958|gb|AEE31079.1| cold regulated 314 thylakoid membrane 2 [Arabidopsis thaliana]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/179 (64%), Positives = 143/179 (79%), Gaps = 5/179 (2%)

Query: 51  RLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTARNLQWISTISSTVLMLAKGTAVPK 105
           RLS + +    V+    KR+ RG S VCYA+P L+  NLQWISTIS   LM A+GT + K
Sbjct: 5   RLSADRQRTATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHK 64

Query: 106 SFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQ 165
           SF+VPLFALQAP  ++SW+KGEYGIWAAFLALL RLFF  P ELELPF+ALLLVIVAP+Q
Sbjct: 65  SFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQ 124

Query: 166 VLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI 224
           V+++RG Q+GAI+SL I+ +LAFQHFSRAG L+KAF+Q SV+AT+AII +T +S LFLI
Sbjct: 125 VMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:505006154	225	COR413IM1 "AT1G29395" [Arabido	0.790	0.786	0.574	3.5e-52
TAIR|locus:2013743	226	COR314-TM2 "AT1G29390" [Arabid	0.790	0.783	0.593	1.2e-51
TAIR|locus:2115010	202	AT4G37220 "AT4G37220" [Arabido	0.589	0.653	0.278	7.4e-11
TAIR|locus:2077982	203	COR413-PM2 "AT3G50830" [Arabid	0.696	0.768	0.284	1.5e-10
TAIR|locus:2044641	197	COR413-PM1 "AT2G15970" [Arabid	0.629	0.715	0.275	2.2e-09

TAIR|locus:505006154 COR413IM1 "AT1G29395" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 104/181 (57%), Positives = 137/181 (75%)

Query:    48 NPLRLSVNHEEMKMVT----KRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAV 103
             NPLRLS + +    V+    KR+ RG S VCYA+P++A +LQWISTIS   LMLA+GT +
Sbjct:    45 NPLRLSGDRQRTATVSTRVEKRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGI 104

Query:   104 PKSFLVPLFALQAPADVISWIKGEYGIWXXXXXXXXXXXXXIPGELELPFMALLLVIVAP 163
              KS +VPLFAL AP+ +++WIKGEYG+W              PGELELPF+ALLLVIVAP
Sbjct:   105 HKSVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAP 164

Query:   164 HQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFL 223
             +QV+ +RG Q+GAII++ I+G+LAFQHFSRAG+L KA+E+GSV+AT+AII +T +S L L
Sbjct:   165 YQVMNIRGKQEGAIIAIAISGFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVSLLLL 224

Query:   224 I 224
             +
Sbjct:   225 L 225

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS;IDA

GO:0009631 "cold acclimation" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0031357 "integral to chloroplast inner membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2013743 COR314-TM2 "AT1G29390" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 108/182 (59%), Positives = 135/182 (74%)

Query:    48 NPLRLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTARNLQWISTISSTVLMLAKGTA 102
             NPLRLS + +    V+    KR+ RG S VCYA+P L+  NLQWISTIS   LM A+GT 
Sbjct:    45 NPLRLSADRQRTATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTG 104

Query:   103 VPKSFLVPLFALQAPADVISWIKGEYGIWXXXXXXXXXXXXXIPGELELPFMALLLVIVA 162
             + KSF+VPLFALQAP  ++SW+KGEYGIW              P ELELPF+ALLLVIVA
Sbjct:   105 IHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVA 164

Query:   163 PHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLF 222
             P+QV+++RG Q+GAI+SL I+ +LAFQHFSRAG L+KAF+Q SV+AT+AII +T +S LF
Sbjct:   165 PYQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLF 224

Query:   223 LI 224
             LI
Sbjct:   225 LI 226

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0031357 "integral to chloroplast inner membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2115010 AT4G37220 "AT4G37220" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 39/140 (27%), Positives = 69/140 (49%)

Query:    84 LQWISTISSTVLMLAKGT----AVPKSFLVPLFALQAPADVISWIKGEYGIWXXXXXXXX 139
             LQW ++I +  L++   T     +  + LVP      P+ +  +  G++G W        
Sbjct:    50 LQWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIV 109

Query:   140 XXXX--XIPGELELPFMALLLVIVAPHQVL-TLRGTQQGAIISLVIAGYLAFQHFSRAGN 196
                     P  LE+P   +L+V+V+P  +  TLR +  GA+I LVIA YL  +H   +G 
Sbjct:   110 RLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGG 169

Query:   197 LRKAFEQGSVVA-TLAIICI 215
              + +F Q + ++ T+ I+ +
Sbjct:   170 FKNSFTQKNGISNTIGIVAL 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP;RCA

TAIR|locus:2077982 COR413-PM2 "AT3G50830" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 48/169 (28%), Positives = 81/169 (47%)

Query:    57 EEMKMVTKRKSRGFSAVCYASPLT--ARNLQWISTISSTVLMLAKGT----AVPKSFLVP 110
             EE+K+  K+    FS V     L      L+++++ ++  L++   T     +  S L+P
Sbjct:    25 EELKVAAKKL---FSDVSKLGGLGFGVSFLKFLASFAAIYLLILDRTNWKTKMLTSLLIP 81

Query:   111 LFALQAPADVISWIKGEYGIWXXXXXXXXXXXX--XIPGELELPFMALLLVIVAPHQVLT 168
                L  P+ + +++ G+ G W                P  LE+P   +LL++V+PH +  
Sbjct:    82 YIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLVVSPHFLAH 141

Query:   169 -LRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVA-TLAIICI 215
              +RGT  G +ISL I  YL  +H   +G  R +F Q   V+ TL II +
Sbjct:   142 HIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRGVSNTLGIILL 190

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2044641 COR413-PM1 "AT2G15970" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 41/149 (27%), Positives = 67/149 (44%)

Query:    84 LQWISTISSTVLMLAKGTA----VPKSFLVPLFALQAPADVISWIKGEYGIWXXXXXXXX 139
             L+W+++I++  L++   T     +  S L+P      P+ +    +GE G W        
Sbjct:    48 LEWVASIAAIYLLVLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVV 107

Query:   140 XXXXXIPGE--LELPFMALLLVIVAPHQVL-TLRGTQQGAIISLVIAGYLAFQHFSRAGN 196
                        LELP   +LL +VAP+ +  T R +  G  I L I  YL  +H   +G 
Sbjct:   108 QLFFPKHAREYLELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGG 167

Query:   197 LRKAFEQGSVVA-TLAIICITALSCLFLI 224
              R AF + + ++ T+ IIC+       LI
Sbjct:   168 FRNAFTKANGISNTVGIICLVVFPVWALI 196


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       180   0.00092  109 3  11 22  0.49    31
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  146 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.27u 0.11s 14.38t   Elapsed:  00:00:01
  Total cpu time:  14.27u 0.11s 14.38t   Elapsed:  00:00:01
  Start:  Fri May 10 12:14:37 2013   End:  Fri May 10 12:14:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0009631 "cold acclimation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0005773 "vacuole" evidence=IDA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I1G5	CRIM2_ARATH	No assigned EC number	0.6455	0.8214	0.8141	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam05562	186	pfam05562, WCOR413, Cold acclimation protein WCOR4	1e-53

>gnl|CDD|191305 pfam05562, WCOR413, Cold acclimation protein WCOR413

 Score =  170 bits (432), Expect = 1e-53
 Identities = 65/178 (36%), Positives = 94/178 (52%), Gaps = 10/178 (5%)

Query: 47  FNPLRLSVNHEEMKMVTKRKSRGFSAVCYAS-PLTARNLQWISTISSTVLMLAKG----T 101
                LS + +E+    K+      A+           LQW+++I++  L++       T
Sbjct: 10  AAAALLSSDLQELGAAAKK--LASHAIKLGGLGFGTTFLQWLASIAAIYLLILDRTNWKT 67

Query: 102 AVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFF--FIPGELELPFMALLLV 159
            +  S LVP   L  P+ + SWI+GE G W AF+A++VRLFF    PGELELP   +LLV
Sbjct: 68  NILTSLLVPYIFLSLPSVIFSWIRGEVGKWIAFIAVIVRLFFPRHFPGELELPGALILLV 127

Query: 160 IVAPHQVL-TLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICIT 216
           +VAP  +  T RG+Q G +I LVI  YL  +H   +G  R AF +GS V+    I + 
Sbjct: 128 VVAPSLIASTFRGSQIGVVICLVIGCYLLQEHIRASGGFRNAFTKGSGVSNTIGIILL 185

This family consists of several WCOR413-like plant cold acclimation proteins. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PF05562	187	WCOR413: Cold acclimation protein WCOR413; InterPr	100.0

>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins

Probab=100.00  E-value=2.1e-68  Score=453.78  Aligned_cols=169  Identities=42%  Similarity=0.743  Sum_probs=156.3

Q ss_pred             ceeccceeccCccceeeeeeccCCCceeeeec-CCCchhhHHHHHHHHHHHHHHhc----CCCCChhhHHHHHHhhCChh
Q 027376           45 FAFNPLRLSVNHEEMKMVTKRKSRGFSAVCYA-SPLTARNLQWISTISSTVLMLAK----GTAVPKSFLVPLFALQAPAD  119 (224)
Q Consensus        45 ~~fnpl~~~~~~~~~~~~~~~~~~g~~~~c~~-a~~~t~~LqWiasiAAi~LLL~r----~TniltSLLVPyialslPs~  119 (224)
                      .++|+..+++|-++.+.+  .|+++..++|++ ++++++++||++++||+|||+.|    ||||+|||||||+|+|+|++
T Consensus         9 ~~~~~~~l~sd~~~l~~a--a~kl~~~a~~~~~~~~~t~~lqWias~aAi~LlildrtnwkTniltslLVPyi~lslPs~   86 (187)
T PF05562_consen    9 SEFAAALLSSDLQELGMA--AKKLASHAICLGSLGFGTSFLQWIASIAAIYLLILDRTNWKTNILTSLLVPYIFLSLPSV   86 (187)
T ss_pred             chhhhhhhccCHHHHHHH--HHhhhcceeeeccccccHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHHhCcHH
Confidence            588999999998875544  466788899995 89999999999999999999555    59999999999999999999


Q ss_pred             hHHHhcCcchhHHHHHHHHHHHhh--cCCCccchhhhhhhHhhccchhhhh-hcCCchhHHHHHHHHHHHHHHHHHhhCc
Q 027376          120 VISWIKGEYGIWAAFLALLVRLFF--FIPGELELPFMALLLVIVAPHQVLT-LRGTQQGAIISLVIAGYLAFQHFSRAGN  196 (224)
Q Consensus       120 vf~~iRGe~G~WiAFlAvvlRLFF--~fP~eLELP~a~iLLiVVAP~~~~~-lRgs~~G~vIcL~IacYLl~qHir~sGG  196 (224)
                      +|+|+|||||+||||+|+++||||  |||||||||++++||+||||+++|+ +||+|+|++|||+|||||+|||||++||
T Consensus        87 if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R~~~~G~vi~l~I~~YLl~qHi~~~Gg  166 (187)
T PF05562_consen   87 IFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFRGSQIGAVICLAIACYLLQQHIRASGG  166 (187)
T ss_pred             HHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhccCCeeehhHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999  6999999999999999999999998 5999999999999999999999999999


Q ss_pred             chhhhccCc-chhhHHHHHH
Q 027376          197 LRKAFEQGS-VVATLAIICI  215 (224)
Q Consensus       197 fr~AF~q~~-v~~TigII~L  215 (224)
                      +||||+|++ +.||+||+++
T Consensus       167 ~r~aF~~~~gis~t~~I~ll  186 (187)
T PF05562_consen  167 FRNAFTQGSGISNTIGIILL  186 (187)
T ss_pred             hhhhhhcccccceeeEEEEe
Confidence            999999999 5588888754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00