Citrus Sinensis ID: 027380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRSKLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEcccEEEEccccccEEEEEEEcccEEEEEEccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccccccHcHHcccccccEEEEEccccccEEEEEcHHHEEHHccccccEEEEEccccEEEEEHcHHEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mletmessvnggfsqlqsygdsseeelsvlprhtkvvvtgnnrtKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALsvieaptgneedddlefdnvpwnisdlasddtqkshrsklrthkstgsshkttsrslscdshsqskgsistpgsmkidlsklEMGALWRYWRHFnlvdaipnpsreQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Flexible Loop (DISEMBL)
MLETmessvnggfSQLQSYGDSSEEELSVLPRhtkvvvtgnnrtksvLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAptgneedddLEFDNVPWNISDlasddtqkshrsklrthkstgsshkttsrslscdshsqskgsistpgsmkIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Low Complexity Region (SEG)
MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRSKLrthkstgsshkttsrsLSCDSHSQSKGSISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Disordered region (IsUnstruct)
*******************************RHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVI***************************************************************************LSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRL*****
Disordered Region (DISOPRED)
*****************************LPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNAL*****************************************************************************DLSKLEMGALWRYWRHFNL**********QLIDVVQRHFMSQQMDELQVIVGFVQAAKRLK****
Disordered Region (DISEMBL)
**********GGFSQLQ***********VLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLA*******************************************PGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Disordered Region (DISPRO)
**************************LSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAP*******************************************************************SMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRSKLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
359492114	223	PREDICTED: uncharacterized protein LOC10	0.991	0.995	0.897	1e-111
225458376	228	PREDICTED: uncharacterized protein LOC10	0.991	0.973	0.878	1e-109
255538556	225	conserved hypothetical protein [Ricinus	0.986	0.982	0.889	1e-109
224136578	228	predicted protein [Populus trichocarpa]	0.991	0.973	0.886	1e-109
363807704	222	uncharacterized protein LOC100806535 [Gl	0.991	1.0	0.857	1e-108
356519050	223	PREDICTED: uncharacterized protein LOC10	0.991	0.995	0.866	1e-108
224067361	224	predicted protein [Populus trichocarpa]	0.973	0.973	0.884	1e-108
363808178	224	uncharacterized protein LOC100787225 [Gl	0.991	0.991	0.858	1e-107
449470011	223	PREDICTED: uncharacterized protein LOC10	0.991	0.995	0.844	1e-107
363807457	218	uncharacterized protein LOC100784573 [Gl	0.968	0.995	0.854	1e-104

>gi|359492114|ref|XP_002283430.2| PREDICTED: uncharacterized protein LOC100247103 isoform 1 [Vitis vinifera] gi|302142443|emb|CBI19646.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/225 (89%), Positives = 212/225 (94%), Gaps = 3/225 (1%)

Query: 1   MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLE +ESSVNGGFSQLQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+N+ WN SD+ASDDTQKSHRS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMASDDTQKSHRS 120

Query: 121 KLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP-GSMKIDLSKLEMGALWRYWRHFNLV 179
           + RTHKS+GSSHKT SRSLSCD  SQSKGSISTP GS K+DLSKLEM ALWRY RHFNLV
Sbjct: 121 RHRTHKSSGSSHKTMSRSLSCD--SQSKGSISTPRGSTKVDLSKLEMAALWRYLRHFNLV 178

Query: 180 DAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
           D IPNPS+EQLIDVVQRHF++QQMDELQVIVGFVQAAKRLKTVCK
Sbjct: 179 DGIPNPSKEQLIDVVQRHFVTQQMDELQVIVGFVQAAKRLKTVCK 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458376|ref|XP_002283437.1| PREDICTED: uncharacterized protein LOC100247103 isoform 2 [Vitis vinifera]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/230 (87%), Positives = 212/230 (92%), Gaps = 8/230 (3%)

Query: 1   MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLE +ESSVNGGFSQLQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDL-----ASDDTQ 115
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+N+ WN SD+     ASDDTQ
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMCADFAASDDTQ 120

Query: 116 KSHRSKLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP-GSMKIDLSKLEMGALWRYWR 174
           KSHRS+ RTHKS+GSSHKT SRSLSCD  SQSKGSISTP GS K+DLSKLEM ALWRY R
Sbjct: 121 KSHRSRHRTHKSSGSSHKTMSRSLSCD--SQSKGSISTPRGSTKVDLSKLEMAALWRYLR 178

Query: 175 HFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
           HFNLVD IPNPS+EQLIDVVQRHF++QQMDELQVIVGFVQAAKRLKTVCK
Sbjct: 179 HFNLVDGIPNPSKEQLIDVVQRHFVTQQMDELQVIVGFVQAAKRLKTVCK 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538556|ref|XP_002510343.1| conserved hypothetical protein [Ricinus communis] gi|223551044|gb|EEF52530.1| conserved hypothetical protein [Ricinus communis]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/226 (88%), Positives = 211/226 (93%), Gaps = 5/226 (2%)

Query: 1   MLETMESSVNGG-FSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 59
           MLE MESSVNGG FS LQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV
Sbjct: 1   MLEAMESSVNGGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60

Query: 60  GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHR 119
           GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNE+DDDLEFDNV WN SDLASDDTQKSHR
Sbjct: 61  GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFDNVQWNGSDLASDDTQKSHR 120

Query: 120 SKLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP-GSMKIDLSKLEMGALWRYWRHFNL 178
           S+ RTHKSTGSSHKT SRSLSCD  SQSK S+STP G+ K+DLSKLEM ALWRYW++FNL
Sbjct: 121 SRHRTHKSTGSSHKTMSRSLSCD--SQSKSSVSTPRGATKVDLSKLEMAALWRYWKYFNL 178

Query: 179 VDAIP-NPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVC 223
           VDAIP NPS+EQL+DV+QRHFMSQQMDELQVIVGFVQAAKRLKTVC
Sbjct: 179 VDAIPTNPSKEQLVDVIQRHFMSQQMDELQVIVGFVQAAKRLKTVC 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136578|ref|XP_002326895.1| predicted protein [Populus trichocarpa] gi|222835210|gb|EEE73645.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/230 (88%), Positives = 211/230 (91%), Gaps = 8/230 (3%)

Query: 1   MLETMESSVNGG-----FSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVV 55
           M ETMESSVNGG     FS LQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVV
Sbjct: 1   MFETMESSVNGGGVGGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVV 60

Query: 56  KKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQ 115
           KKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNE+DDDLEFDNV WN  D+AS DTQ
Sbjct: 61  KKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFDNVQWNGLDMASYDTQ 120

Query: 116 KSHRSKLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP-GSMKIDLSKLEMGALWRYWR 174
           KSHRS+ RTHKSTGSSHKT SRSLSCD  SQSKGS+STP G+ K+DLSKLEM ALWRYWR
Sbjct: 121 KSHRSRNRTHKSTGSSHKTMSRSLSCD--SQSKGSVSTPRGTTKVDLSKLEMAALWRYWR 178

Query: 175 HFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
           HFNLVDAIPNPS+EQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Sbjct: 179 HFNLVDAIPNPSKEQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807704|ref|NP_001242423.1| uncharacterized protein LOC100806535 [Glycine max] gi|255641384|gb|ACU20969.1| unknown [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/224 (85%), Positives = 205/224 (91%), Gaps = 2/224 (0%)

Query: 1   MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLE MESSVNGGF+ LQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAMESSVNGGFTHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+N+PWN SD+ASDDTQKSH+S
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMPWNGSDMASDDTQKSHKS 120

Query: 121 KLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTPGSMKIDLSKLEMGALWRYWRHFNLVD 180
           + R H++ GSSHKT SRS S D  SQSKGS+S P    +DLSKLEM ALWRYWRHFNLVD
Sbjct: 121 RHRMHRTLGSSHKTMSRSFSGD--SQSKGSVSMPNGSAVDLSKLEMAALWRYWRHFNLVD 178

Query: 181 AIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
            +PNPS+EQL+DVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Sbjct: 179 TVPNPSKEQLVDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519050|ref|XP_003528187.1| PREDICTED: uncharacterized protein LOC100809195 [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 207/225 (92%), Gaps = 3/225 (1%)

Query: 1   MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLE MESSVNGGF+ LQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAMESSVNGGFTHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+N+PWN SDLASDDTQK H+ 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMPWNGSDLASDDTQKFHKP 120

Query: 121 KLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP-GSMKIDLSKLEMGALWRYWRHFNLV 179
           + R H++ GSSHKT SRS S D  SQSKGS+S P GS K+DLSKLEM ALWRYWRHFNLV
Sbjct: 121 RHRMHRTLGSSHKTMSRSFSGD--SQSKGSVSMPHGSTKVDLSKLEMAALWRYWRHFNLV 178

Query: 180 DAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
           DA+PNPS+EQL+DVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK
Sbjct: 179 DAVPNPSKEQLVDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067361|ref|XP_002302473.1| predicted protein [Populus trichocarpa] gi|222844199|gb|EEE81746.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/226 (88%), Positives = 209/226 (92%), Gaps = 8/226 (3%)

Query: 5   MESSVNG-----GFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 59
           MESSVNG     GFS LQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV
Sbjct: 1   MESSVNGEGVVGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60

Query: 60  GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHR 119
           GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+NV WN  D+ASDDTQKSHR
Sbjct: 61  GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENVQWNGLDMASDDTQKSHR 120

Query: 120 SKLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP-GSMKIDLSKLEMGALWRYWRHFNL 178
           S+ RTHKSTGSSHKT SRSLSCD  SQSKGSISTP G+ K+DLSKLE+ ALWRYWRHFNL
Sbjct: 121 SRNRTHKSTGSSHKTMSRSLSCD--SQSKGSISTPRGTAKVDLSKLEVAALWRYWRHFNL 178

Query: 179 VDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
           VD+IPNPS+EQLIDVVQRHFMSQQMDELQVIVGFV+AAKRLKTVCK
Sbjct: 179 VDSIPNPSKEQLIDVVQRHFMSQQMDELQVIVGFVKAAKRLKTVCK 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808178|ref|NP_001241972.1| uncharacterized protein LOC100787225 [Glycine max] gi|255644949|gb|ACU22974.1| unknown [Glycine max]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/226 (85%), Positives = 206/226 (91%), Gaps = 4/226 (1%)

Query: 1   MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLE MESSVNGGFS LQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAMESSVNGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+N+PWN SD+ASDDT K H+S
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMPWNGSDMASDDTHKFHKS 120

Query: 121 KLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP--GSMKIDLSKLEMGALWRYWRHFNL 178
           + R H++ GSSHKTTSRS S DS  QSKGS+S P  GS K+DLSKLEM ALWRYWRHFNL
Sbjct: 121 RHRMHRTLGSSHKTTSRSFSADS--QSKGSVSMPLHGSTKVDLSKLEMAALWRYWRHFNL 178

Query: 179 VDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
           VDA PNPS+EQL+DVVQRHF+SQQMDELQVIVGFVQAAKRLKTV K
Sbjct: 179 VDAFPNPSKEQLVDVVQRHFISQQMDELQVIVGFVQAAKRLKTVWK 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470011|ref|XP_004152712.1| PREDICTED: uncharacterized protein LOC101220556 [Cucumis sativus] gi|449496053|ref|XP_004160024.1| PREDICTED: uncharacterized LOC101220556 [Cucumis sativus]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/225 (84%), Positives = 208/225 (92%), Gaps = 3/225 (1%)

Query: 1   MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           M+E +ESS+NGGFS LQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MIEAVESSINGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+N+ WN  D+ASDD QKSH+S
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNRIDMASDDAQKSHKS 120

Query: 121 KLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP-GSMKIDLSKLEMGALWRYWRHFNLV 179
           + + HKS+GSSHKT SRSLSCD  SQSK S+S P GS K+DLSKLEM ALWRYWRHFNLV
Sbjct: 121 RHKLHKSSGSSHKTMSRSLSCD--SQSKSSVSAPQGSTKVDLSKLEMAALWRYWRHFNLV 178

Query: 180 DAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
           DAIPNPS+EQL+D+VQRHFMSQQ+DELQVI+GFV+AAKRLKTVCK
Sbjct: 179 DAIPNPSKEQLVDLVQRHFMSQQLDELQVIMGFVKAAKRLKTVCK 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807457|ref|NP_001242646.1| uncharacterized protein LOC100784573 [Glycine max] gi|255639437|gb|ACU20013.1| unknown [Glycine max]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/220 (85%), Positives = 202/220 (91%), Gaps = 3/220 (1%)

Query: 1   MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLE MES VNGGFS LQS GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAMESLVNGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+N+PWN SD+ASDDT KSH+S
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMPWNGSDMASDDTHKSHKS 120

Query: 121 KLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTP-GSMKIDLSKLEMGALWRYWRHFNLV 179
           + R +++ GSSHKT SRS S D  SQSKGS+S P GS K+DLSKLEM ALWRYWRHFNLV
Sbjct: 121 RHRMYRTMGSSHKTMSRSFSGD--SQSKGSVSMPNGSAKVDLSKLEMAALWRYWRHFNLV 178

Query: 180 DAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRL 219
           DA+PNPS+EQL+DVVQRHFMSQQ+DELQVIVGFVQAAKRL
Sbjct: 179 DAVPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVQAAKRL 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2037286	242	AT1G75060 "AT1G75060" [Arabido	0.950	0.880	0.711	3.9e-76
UNIPROTKB|I3LU53	124	SAP30 "Uncharacterized protein	0.294	0.532	0.342	8.8e-05

TAIR|locus:2037286 AT1G75060 "AT1G75060" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 155/218 (71%), Positives = 177/218 (81%)

Query:    11 GGFSQLQS-YGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 68
             GGFSQLQS +GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV
Sbjct:    17 GGFSQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 76

Query:    69 LTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDN-VPWNI-SDLASDDTQKSHRSKLXXXX 126
             LTNGIEVKLQRNALSV+E PTGNEED+DLE D+   WN  SD+ ++DT K H+SK     
Sbjct:    77 LTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHSTQWNHPSDMTTEDTLKPHKSKKRGHR 136

Query:   127 XXXXXXXXXXXXLSCDSHSQSKGSISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPS 186
                         +SCDSHS+   SI+   +MK+DL+KL+M AL RYWRHFNLVDA+PNP+
Sbjct:   137 SSRLSQKALYREVSCDSHSKIS-SITPRLNMKVDLTKLDMAALLRYWRHFNLVDALPNPT 195

Query:   187 REQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
             +EQLID++QRHFMSQQMDELQVIVGFVQAA  +K  C+
Sbjct:   196 KEQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKKACQ 233

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3LU53 SAP30 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 97 (39.2 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query:   151 ISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIV 210
             I TP   ++DL +L++  L RY RHF L    P  ++ QL+++V  HF S  ++E   + 
Sbjct:    47 IDTP---EVDLYQLQVNTLRRYKRHFKLPTR-PGLNKAQLVEIVGCHFRSIPVNEKDTLT 102

Query:   211 GFVQAAKRLK 220
              F+ + K  K
Sbjct:   103 YFIYSVKNDK 112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       208   0.00077  112 3  11 23  0.40    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  171 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  17.08u 0.14s 17.22t   Elapsed:  00:00:01
  Total cpu time:  17.08u 0.14s 17.22t   Elapsed:  00:00:02
  Start:  Fri May 10 12:20:30 2013   End:  Fri May 10 12:20:32 2013

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam13867	53	pfam13867, SAP30_Sin3_bdg, Sin3 binding region of	8e-23

>gnl|CDD|206038 pfam13867, SAP30_Sin3_bdg, Sin3 binding region of histone deacetylase complex subunit SAP30

 Score = 86.9 bits (216), Expect = 8e-23
 Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 164 LEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAK 217
           L +  L RY RHF LV   PN S+EQL + VQ+HFMSQ +DE +VI GF+ A K
Sbjct: 1   LGVNTLRRYKRHFKLVTR-PNSSKEQLAEAVQKHFMSQPLDEQEVIAGFLYAVK 53

This C-terminal domain of the SAP30 proteins appears to be the binding region for Sin3. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PF13867	53	SAP30_Sin3_bdg: Sin3 binding region of histone dea	99.84
PRK05886	109	yajC preprotein translocase subunit YajC; Validate	95.77
PF04648	13	MF_alpha: Yeast mating factor alpha hormone; Inter	94.51
PF02037	35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	93.51
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	92.25
smart00513	35	SAP Putative DNA-binding (bihelical) motif predict	88.14

>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A

Probab=99.84  E-value=3.2e-21  Score=135.39  Aligned_cols=53  Identities=42%  Similarity=0.658  Sum_probs=41.0

Q ss_pred             cchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccccCChHHHHHHHHHHHh
Q 027380          164 LEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAK  217 (224)
Q Consensus       164 Le~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq~VdE~eVI~~Fi~avK  217 (224)
                      |+++|||||++||+|+ ..|+.+|+||+.+|.+||++|+|||.+||++|||+||
T Consensus         1 L~~~tLrrY~~~~~l~-~~~~~sK~qLa~~V~kHF~s~~v~E~evI~~Fly~vk   53 (53)
T PF13867_consen    1 LQTPTLRRYKKHYKLP-ERPRSSKEQLANAVRKHFNSQPVDENEVIANFLYKVK   53 (53)
T ss_dssp             S-HHHHHHHHHHTT-----SS--HHHHHHHHHHHHTT----HHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence            7899999999999994 4679999999999999999999999999999999997

>PRK05886 yajC preprotein translocase subunit YajC; Validated

Probab=95.77  E-value=0.022  Score=45.97  Aligned_cols=57  Identities=19%  Similarity=0.185  Sum_probs=40.6

Q ss_pred             ccccCcceEEEEecCCccceeEeeccceeeeccccCceEEEEeecCcEEEEeeceee-eecCCCCCCcC
Q 027380           27 LSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALS-VIEAPTGNEED   94 (224)
Q Consensus        27 lsvLPrhTkV~VTGNnRTKsvLVGL~GVVkKAVGLGGWHWLvL~NG~EVkLQRNALs-viE~PtG~Eed   94 (224)
                      ++-|=+..+|+-+|         |++|.|.+- + ..+==|.+..|.+++++|+|++ |+.|....||+
T Consensus        36 ~~~Lk~GD~VvT~g---------Gi~G~V~~I-~-d~~v~leia~gv~i~~~r~AI~~v~~p~~~~~e~   93 (109)
T PRK05886         36 HESLQPGDRVHTTS---------GLQATIVGI-T-DDTVDLEIAPGVVTTWMKLAVRDRILPDDEDDEE   93 (109)
T ss_pred             HHhcCCCCEEEECC---------CeEEEEEEE-e-CCEEEEEECCCeEEEEEhhheeeecCCCcccccc
Confidence            45667778888877         999999873 3 2333334458999999999999 66666644443

>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha]

Probab=94.51  E-value=0.013  Score=31.75  Aligned_cols=11  Identities=55%  Similarity=1.368  Sum_probs=9.9

Q ss_pred             eEEEEeecCcE
Q 027380           64 WHWLVLTNGIE   74 (224)
Q Consensus        64 WHWLvL~NG~E   74 (224)
                      ||||.|..|+.
T Consensus         1 WhWL~~~~GqP   11 (13)
T PF04648_consen    1 WHWLRLSPGQP   11 (13)
T ss_pred             CcceeccCCCc
Confidence            99999999974

The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []

Probab=93.51  E-value=0.14  Score=33.14  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             ccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhh
Q 027380          161 LSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHF  198 (224)
Q Consensus       161 L~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF  198 (224)
                      |.++.++-||.+.+.++|   ..+.+|++|++-+..||
T Consensus         1 l~~l~v~eLk~~l~~~gL---~~~G~K~~Li~Rl~~~l   35 (35)
T PF02037_consen    1 LSKLTVAELKEELKERGL---STSGKKAELIERLKEHL   35 (35)
T ss_dssp             TTTSHHHHHHHHHHHTTS----STSSHHHHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHCCC---CCCCCHHHHHHHHHHhC
Confidence            467889999999999999   55678999999999986

In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=92.25  E-value=0.33  Score=31.66  Aligned_cols=35  Identities=9%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             ccchhHHHHHHHhcccccCCCCC-CHHHHHHHHHhhh
Q 027380          163 KLEMGALWRYWRHFNLVDAIPNP-SREQLIDVVQRHF  198 (224)
Q Consensus       163 KLe~~TLrRYkkhfkL~~~~P~~-sKeQLv~aV~rHF  198 (224)
                      .-...-|+.|-+.|++ .+.+.. +|++|++.|.+|+
T Consensus         3 tWs~~~L~~wL~~~gi-~~~~~~~~rd~Ll~~~k~~y   38 (38)
T PF10281_consen    3 TWSDSDLKSWLKSHGI-PVPKSAKTRDELLKLAKKNY   38 (38)
T ss_pred             CCCHHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHhC
Confidence            3456789999999999 556666 9999999999875

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

Probab=88.14  E-value=1.1  Score=28.51  Aligned_cols=34  Identities=18%  Similarity=0.275  Sum_probs=28.7

Q ss_pred             cccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhh
Q 027380          162 SKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHF  198 (224)
Q Consensus       162 ~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF  198 (224)
                      .++.++.||.+.+.++|   ....+|++|++-+..|.
T Consensus         2 ~~l~~~~Lk~~l~~~gl---~~~G~K~~Lv~Rl~~~~   35 (35)
T smart00513        2 AKLKVSELKDELKKRGL---STSGTKAELVDRLLEAL   35 (35)
T ss_pred             CcCcHHHHHHHHHHcCC---CCCCCHHHHHHHHHHhC
Confidence            56889999999999999   34568999999988763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2ld7_A	94	Solution Structure Of The Msin3a Pah3-Sap30 Sid Com		2e-04

>pdb|2LD7|A Chain A, Solution Structure Of The Msin3a Pah3-Sap30 Sid Complex Length = 94

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 151 ISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIV 210
           I TP   ++DL +L++  L RY RHF L    P  ++ QL+++V  HF S  ++E   + 
Sbjct: 17  IDTP---EVDLYQLQVNTLRRYKRHFKLP-TRPGLNKAQLVEIVGCHFKSIPVNEKDTLT 72
Query: 211 GFVQAAKRLK 220
            F+ + +  K
Sbjct: 73  CFIYSVRNDK 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2ld7_A	94	Histone deacetylase complex subunit SAP30; transcr	1e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus} Length = 94

 Score = 89.7 bits (222), Expect = 1e-23
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 145 SQSKGSISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMD 204
                 +    + ++DL +L++  L RY RHF L    P  ++ QL+++V  HF S  ++
Sbjct: 8   DGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTR-PGLNKAQLVEIVGCHFKSIPVN 66

Query: 205 ELQVIVGFVQAAKRLKT 221
           E   +  F+ + +  K 
Sbjct: 67  EKDTLTCFIYSVRNDKN 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 31/251 (12%), Positives = 63/251 (25%), Gaps = 88/251 (35%)

Query: 25  EELSVLPRHTKVVV-----TGNNRTKSVLVG---LQGVVKKAVGLGGWHWLVLTNGIE-- 74
           + L  L     V++     +G    K+ +     L   V+  +      WL L N     
Sbjct: 142 QALLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPE 196

Query: 75  --VKLQRNALSVIEAPTGNEED---------DDLE------------------FDNVPWN 105
             +++ +  L  I+    +  D           ++                    NV  N
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QN 255

Query: 106 ISDLAS-----------------DDTQKSHRSKLRT-HKSTGSSHKTT----SRSLSCD- 142
                +                 D    +  + +   H S   +         + L C  
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 143 ---SHSQSKGS---ISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQR 196
                     +   +S       D       A W  W+H N          ++L  +++ 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRD-----GLATWDNWKHVNC---------DKLTTIIES 361

Query: 197 HFMSQQMDELQ 207
                +  E +
Sbjct: 362 SLNVLEPAEYR 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2ld7_A	94	Histone deacetylase complex subunit SAP30; transcr	99.9
2do1_A	55	Nuclear protein HCC-1; SAP domain, structural geno	92.71
1zrj_A	50	E1B-55KDA-associated protein 5 isoform C; SAP doma	89.1
2rnn_A	114	E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind	88.79
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	87.68
1h1j_S	51	THO1 protein; SAP domain, DNA binding; NMR {Saccha	87.59

>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}

Probab=99.90  E-value=4.1e-24  Score=165.42  Aligned_cols=68  Identities=29%  Similarity=0.507  Sum_probs=64.7

Q ss_pred             CCCccccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccccCChHHHHHHHHHHHhhcccc
Q 027380          154 PGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTV  222 (224)
Q Consensus       154 ~~~p~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq~VdE~eVI~~Fi~avKr~Kt~  222 (224)
                      ...|+|||++|+++|||||++||+| .+.|+.+|+||+.+|.+||++|+|+|.|||++|||+||+.++-
T Consensus        17 ~~~p~vdf~kL~~~tLrrY~r~y~L-~~~~~~sK~qLa~aV~kHF~s~~VdE~evI~~Fly~VK~~~~k   84 (94)
T 2ld7_A           17 IDTPEVDLYQLQVNTLRRYKRHFKL-PTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVRNDKNK   84 (94)
T ss_dssp             SCCCCCCCSSSCHHHHHHHHHHTTC-CCCSSCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCSSC
T ss_pred             CCCCCcCHHHCCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCcc
Confidence            3478899999999999999999999 8999999999999999999999999999999999999999864

>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=92.71  E-value=0.18  Score=35.23  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=36.6

Q ss_pred             cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccc
Q 027380          158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQ  201 (224)
Q Consensus       158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq  201 (224)
                      .+|+.+|.++-||.+.+.++|   .....|++|++-+..||...
T Consensus         7 ~~~l~klkV~eLK~~L~~rGL---~~~G~KaeLieRL~~~l~~~   47 (55)
T 2do1_A            7 GVELHKLKLAELKQECLARGL---ETKGIKQDLIHRLQAYLEEH   47 (55)
T ss_dssp             CCCTTTSCHHHHHHHHHHHTC---CCCSCHHHHHHHHHHHHHHT
T ss_pred             ccCHHHCcHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHHhcC
Confidence            589999999999999999999   34568999999999999765

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=89.10  E-value=0.8  Score=31.41  Aligned_cols=40  Identities=15%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhcc
Q 027380          158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMS  200 (224)
Q Consensus       158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~s  200 (224)
                      .+|+++|.+.-||...+.++|   .....|++|++-++.|+..
T Consensus         7 ~~~~~klkV~eLK~eLk~RgL---~~~G~Ka~Li~RL~~~~~~   46 (50)
T 1zrj_A            7 GMDVRRLKVNELREELQRRGL---DTRGLKAELAERLQAALSG   46 (50)
T ss_dssp             CCCGGGSCHHHHHHHHHHTTC---CCCSCHHHHHHHHHHHHCC
T ss_pred             cCCHHHCcHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHHhc
Confidence            589999999999999999999   4567899999999988753

>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}

Probab=88.79  E-value=0.74  Score=36.60  Aligned_cols=59  Identities=12%  Similarity=0.166  Sum_probs=46.7

Q ss_pred             cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhcccc----CC--hHHHHHHHHHHHhhc
Q 027380          158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQ----MD--ELQVIVGFVQAAKRL  219 (224)
Q Consensus       158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq~----Vd--E~eVI~~Fi~avKr~  219 (224)
                      ...+.+|.++-|+.++|.+.|   .....|++|++-|..||....    .|  -...|..+|++++..
T Consensus        34 ~~~l~kLtVaELK~~cr~~GL---~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g   98 (114)
T 2rnn_A           34 ITLMELLKVSELKDICRSVSF---PVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKN   98 (114)
T ss_dssp             HHHHTTCCHHHHHHHHHHTTC---CTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHcCC---CcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcC
Confidence            357999999999999999999   456899999999999997533    23  235666788887653

>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A

Probab=87.59  E-value=0.79  Score=31.48  Aligned_cols=40  Identities=18%  Similarity=0.119  Sum_probs=35.4

Q ss_pred             ccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccc
Q 027380          159 IDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQ  201 (224)
Q Consensus       159 VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq  201 (224)
                      .|+++|.+.-||...+.++|   .....|++|++-+..|+..-
T Consensus         3 ~~~~kltV~eLK~~Lk~RGL---~~~G~KadLieRL~~~~~~~   42 (51)
T 1h1j_S            3 ADYSSLTVVQLKDLLTKRNL---SVGGLKNELVQRLIKDDEES   42 (51)
T ss_dssp             CSGGGCCHHHHHHHHHHTTC---CCCSSHHHHHHHHHHHHHHS
T ss_pred             chHHHCcHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHHHhc
Confidence            58999999999999999999   44578999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1jeqa1	51	DNA binding C-terminal domain of ku70 {Human (Homo	95.8
d1h1js_	44	S/mar DNA-binding protein Tho1 {Baker's yeast (Sac	84.19

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0055  Score=40.81  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhc
Q 027380          158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFM  199 (224)
Q Consensus       158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~  199 (224)
                      +-+|.+|.++-||-|.|.++|+   -...|++|++.|..||.
T Consensus        12 ~~~L~kltV~~LK~~lk~~gL~---~sGkKa~Li~Ri~~~l~   50 (51)
T d1jeqa1          12 KGTLGKFTVPMLKEACRAYGLK---SGLKKQELLEALTKHFQ   50 (51)
T ss_dssp             HTCGGGCCHHHHHHHHHHTTCC---CCSSHHHHHHHHHHHHT
T ss_pred             cCcHhhCcHHHHHHHHHHcCCC---CCCcHHHHHHHHHHHhh
Confidence            3589999999999999999993   34699999999999995

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: S/mar DNA-binding protein Tho1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.19  E-value=0.71  Score=29.36  Aligned_cols=38  Identities=18%  Similarity=0.122  Sum_probs=33.6

Q ss_pred             ccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhc
Q 027380          159 IDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFM  199 (224)
Q Consensus       159 VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~  199 (224)
                      .|+.+|.++-||...+.-+|   .....|++|++-+..|-.
T Consensus         3 ~dy~~ltv~eLK~~lk~rgL---~~sG~Ka~Li~RL~~~d~   40 (44)
T d1h1js_           3 ADYSSLTVVQLKDLLTKRNL---SVGGLKNELVQRLIKDDE   40 (44)
T ss_dssp             CSGGGCCHHHHHHHHHHTTC---CCCSSHHHHHHHHHHHHH
T ss_pred             CcHHHCcHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHhh
Confidence            58999999999999999999   345689999999999864