Citrus Sinensis ID: 027393

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMVMTD
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccEEEcccccccEEEccccccEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEEccccccEEcccEEEEccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEEccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEccccccEEEEcccEEEEEccccEEEEEcccccHHHHHHHHHHHcHHHcHEEEEccccccEEEEEEEEccccEccccccccHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccHHcccccccHEEEEHHEHccccccccccccccccc
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLedsygtdfpsfmrrqkngylqlprgvtfwdndKEAELLRLgyvkpeviswsprILVLHNFLSMEECDYLRAIArphlqvstvvdtktgkgiksnvrtssgmflspeekkypMIQAIEKRISVfsqvpvengeLIQVLRYekdqyykphhdyfsdtfnlkrgGQRIATMLMYLSdnveggetyfpmvmtd
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGyvkpeviswsPRILVLHNFLSMEECDYLRAIARPhlqvstvvdtktgkgiksnvrtssgmflspeEKKYPMIQAIEKRIsvfsqvpveNGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSdnveggetYFPMVMTD
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMVMTD
******MKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTG*********************YPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFP*****
****PSM*IVFGLLTFVTFGMIIGALFQLAFIRK***************************TFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVV***TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMVMT*
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMVMTD
***APSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMV***
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMVMTD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query224 2.2.26 [Sep-21-2011]
Q5UP57242 Putative prolyl 4-hydroxy N/A no 0.544 0.504 0.355 7e-16
P16924516 Prolyl 4-hydroxylase subu yes no 0.736 0.319 0.337 3e-15
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.589 0.247 0.352 4e-15
O15460535 Prolyl 4-hydroxylase subu yes no 0.589 0.246 0.355 6e-15
P54001534 Prolyl 4-hydroxylase subu yes no 0.593 0.249 0.359 6e-15
Q60716537 Prolyl 4-hydroxylase subu yes no 0.589 0.245 0.347 1e-14
Q1RMU3534 Prolyl 4-hydroxylase subu no no 0.593 0.249 0.338 4e-13
Q5RAG8534 Prolyl 4-hydroxylase subu no no 0.593 0.249 0.338 7e-13
P13674534 Prolyl 4-hydroxylase subu no no 0.593 0.249 0.338 7e-13
Q60715534 Prolyl 4-hydroxylase subu no no 0.593 0.249 0.338 8e-13
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L593 PE=1 SV=1 Back     alignment and function desciption
 Score = 84.0 bits (206), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 13/135 (9%)

Query: 90  LVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQ 149
            VL+N ++  +C  +   A   L      D++   G   N+R S  M++S   K  PM++
Sbjct: 61  FVLNNLINPTKCQEIMQFANGKL-----FDSQVLSGTDKNIRNSQQMWIS---KNNPMVK 112

Query: 150 AIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFN-----LKRGGQRIATML 204
            I + I     VP +N E +QV+RY  +QYY  HHD   D+       ++RGGQRI T+L
Sbjct: 113 PIFENICRQFNVPFDNAEDLQVVRYLPNQYYNEHHDSCCDSSKQCSEFIERGGQRILTVL 172

Query: 205 MYLSDNVEGGETYFP 219
           +YL++    G TYFP
Sbjct: 173 IYLNNEFSDGHTYFP 187
May catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in the 6 collagen-like proteins of Mimivirus.
Acanthamoeba polyphaga (taxid: 5757)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query224
224069056287 predicted protein [Populus trichocarpa] 0.977 0.763 0.801 1e-103
356576923287 PREDICTED: prolyl 4-hydroxylase subunit 0.977 0.763 0.792 1e-102
363814557238 uncharacterized protein LOC100794585 [Gl 0.977 0.920 0.792 1e-102
255637879287 unknown [Glycine max] 0.977 0.763 0.783 1e-99
15224220283 P4H isoform 1 [Arabidopsis thaliana] gi| 0.964 0.763 0.760 8e-95
449468746290 PREDICTED: putative prolyl 4-hydroxylase 0.973 0.751 0.760 4e-94
297824279283 AT-P4H-1 [Arabidopsis lyrata subsp. lyra 0.964 0.763 0.746 2e-92
225433714287 PREDICTED: prolyl 4-hydroxylase subunit 0.977 0.763 0.707 3e-90
357445147281 Prolyl 4-hydroxylase subunit alpha-1 [Me 0.955 0.761 0.738 4e-90
115457822267 Os04g0346000 [Oryza sativa Japonica Grou 0.834 0.700 0.690 5e-79
>gi|224069056|ref|XP_002302889.1| predicted protein [Populus trichocarpa] gi|222844615|gb|EEE82162.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/222 (80%), Positives = 199/222 (89%), Gaps = 3/222 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQK---NGYLQLPR 59
           MA SMKIVFGLL FVT GMI+GA FQLAFI KLEDSYGT FPSF R +K   + YLQLPR
Sbjct: 1   MASSMKIVFGLLAFVTAGMIVGAFFQLAFILKLEDSYGTKFPSFKRVRKLQSDAYLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G++ WDND EA +LR+GYVKPE+ISWSPRI+VLH+FLS EECDYLRA+A+P L++STVVD
Sbjct: 61  GISHWDNDTEAAVLRIGYVKPEIISWSPRIIVLHDFLSSEECDYLRALAKPRLRISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQY 179
            KTGKGI+S VRTSSGMFLS EEK Y ++QAIEKRISV+SQVP+ENGELIQVLRYEK+QY
Sbjct: 121 VKTGKGIESKVRTSSGMFLSSEEKTYQVVQAIEKRISVYSQVPIENGELIQVLRYEKNQY 180

Query: 180 YKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMV 221
           YKPHHDYFSDTFNLKRGGQR+ATMLMYLSDNVEGGETYFPM 
Sbjct: 181 YKPHHDYFSDTFNLKRGGQRVATMLMYLSDNVEGGETYFPMA 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356576923|ref|XP_003556579.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Glycine max] Back     alignment and taxonomy information
>gi|363814557|ref|NP_001242754.1| uncharacterized protein LOC100794585 [Glycine max] gi|255628535|gb|ACU14612.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255637879|gb|ACU19258.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15224220|ref|NP_181836.1| P4H isoform 1 [Arabidopsis thaliana] gi|3763917|gb|AAC64297.1| hypothetical protein [Arabidopsis thaliana] gi|20197628|gb|AAM15158.1| hypothetical protein [Arabidopsis thaliana] gi|26450452|dbj|BAC42340.1| unknown protein [Arabidopsis thaliana] gi|29824245|gb|AAP04083.1| unknown protein [Arabidopsis thaliana] gi|330255112|gb|AEC10206.1| P4H isoform 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449468746|ref|XP_004152082.1| PREDICTED: putative prolyl 4-hydroxylase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297824279|ref|XP_002880022.1| AT-P4H-1 [Arabidopsis lyrata subsp. lyrata] gi|297325861|gb|EFH56281.1| AT-P4H-1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225433714|ref|XP_002268409.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296089634|emb|CBI39453.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357445147|ref|XP_003592851.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] gi|355481899|gb|AES63102.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|115457822|ref|NP_001052511.1| Os04g0346000 [Oryza sativa Japonica Group] gi|38346023|emb|CAE03962.2| OSJNBb0085H11.11 [Oryza sativa Japonica Group] gi|113564082|dbj|BAF14425.1| Os04g0346000 [Oryza sativa Japonica Group] gi|125547818|gb|EAY93640.1| hypothetical protein OsI_15426 [Oryza sativa Indica Group] gi|125589953|gb|EAZ30303.1| hypothetical protein OsJ_14349 [Oryza sativa Japonica Group] gi|215693934|dbj|BAG89133.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query224
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.959 0.759 0.763 1.8e-87
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.611 0.474 0.611 4.2e-40
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.611 0.477 0.597 8.7e-40
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.611 0.472 0.597 1.4e-39
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.611 0.470 0.589 3.4e-38
TAIR|locus:2081106 299 P4H2 "prolyl 4-hydroxylase 2" 0.620 0.464 0.482 2.1e-29
TAIR|locus:2144960 298 AT5G18900 [Arabidopsis thalian 0.620 0.466 0.482 7.1e-29
TAIR|locus:2088892 288 AT3G28490 [Arabidopsis thalian 0.602 0.468 0.471 1.5e-28
TAIR|locus:2125344272 AT4G35820 [Arabidopsis thalian 0.566 0.466 0.462 2e-24
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.642 0.5 0.374 2.4e-21
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 168/220 (76%), Positives = 193/220 (87%)

Query:     3 MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF--MRRQKNGYLQLPRG 60
             MAP+MKIVFGLLTFVT GM+IG+L QLAFI +LEDSYGT FPS   +R Q   YL   R 
Sbjct:     1 MAPAMKIVFGLLTFVTVGMVIGSLLQLAFINRLEDSYGTGFPSLRGLRGQNTRYL---RD 57

Query:    61 VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDT 120
             V+ W NDK+AELLR+G VKPEV+SWSPRI+VLH+FLS EEC+YL+AIARP LQVSTVVD 
Sbjct:    58 VSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDV 117

Query:   121 KTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYY 180
             KTGKG+KS+VRTSSGMFL+  E+ YP+IQAIEKRI+VFSQVP ENGELIQVLRYE  Q+Y
Sbjct:   118 KTGKGVKSDVRTSSGMFLTHVERSYPIIQAIEKRIAVFSQVPAENGELIQVLRYEPQQFY 177

Query:   181 KPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPM 220
             KPHHDYF+DTFNLKRGGQR+ATMLMYL+D+VEGGETYFP+
Sbjct:   178 KPHHDYFADTFNLKRGGQRVATMLMYLTDDVEGGETYFPL 217
GO:0005506 "iron ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS;IDA
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_II1012
hypothetical protein (287 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.IV.4171.1
proline dehydrogenase (EC-1.5.99.8) (435 aa)
     •  0.899
gw1.I.4241.1
hypothetical protein (326 aa)
     •  0.899
gw1.123.99.1
proline dehydrogenase (EC-1.5.99.8) (440 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_VI0132
pyrroline-5-carboxylate reductase (EC-1.5.1.2) (279 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
PLN00052 310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 4e-46
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 1e-30
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  154 bits (391), Expect = 4e-46
 Identities = 71/137 (51%), Positives = 93/137 (67%), Gaps = 2/137 (1%)

Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SW PRI V   FLS  ECD+L  +A+  +Q S V D K+GK + S VRTSSGMFL  ++
Sbjct: 50  VSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFL--DK 107

Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIAT 202
           ++ P++  IE+RI+ ++ +P EN E IQ+LRYE  Q Y+PH DYF D  N   GG R AT
Sbjct: 108 RQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYAT 167

Query: 203 MLMYLSDNVEGGETYFP 219
           +LMYLS   +GGET FP
Sbjct: 168 VLMYLSTVDKGGETVFP 184

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 224
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
PLN00052 310 prolyl 4-hydroxylase; Provisional 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.94
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.64
PHA02813 354 hypothetical protein; Provisional 99.33
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.24
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.68
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 98.58
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 97.71
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 97.59
PHA02866 333 Hypothetical protein; Provisional 97.3
TIGR02408 277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 96.07
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 96.05
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 94.43
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 93.6
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 91.13
KOG3200224 consensus Uncharacterized conserved protein [Funct 90.93
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 90.34
TIGR01762 288 chlorin-enz chlorinating enzymes. This model repre 89.01
PHA02923 315 hypothetical protein; Provisional 83.84
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-42  Score=302.20  Aligned_cols=172  Identities=47%  Similarity=0.723  Sum_probs=151.6

Q ss_pred             hccccccccCCC-----CcEEEcCCCCCceeeecCcceEEeecCCcEEEEcCCCCHHHHHHHHHHhcCCCccceee-eCC
Q 027393           48 RRQKNGYLQLPR-----GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVV-DTK  121 (224)
Q Consensus        48 ~~~Crg~~~~~~-----~l~c~y~~~~~p~lrlaplK~E~Ls~~P~I~~~~dfLs~~Ec~~Li~~a~~~l~~s~v~-~~~  121 (224)
                      ...|+|.+...+     .++|++...  ||++++|+|+|+|||+|+|++||||||++||++|+++++++++++++. +.+
T Consensus        55 ~~~c~g~~~~~~~~~~~~~~~~~~~~--~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~  132 (289)
T KOG1591|consen   55 EQGCRGELPPLTKLTLRRLSCRNRAG--PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKG  132 (289)
T ss_pred             hhhccCccCccchhHhhhhhcccccC--cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCC
Confidence            448999987654     455555533  999999999999999999999999999999999999999999999994 555


Q ss_pred             CCCcccccccccceeeeCCCCcchHHHHHHHHHHHHhcCCCccccceeeeEEcCCCCCccccccCCCC---c-ccCCCCC
Q 027393          122 TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSD---T-FNLKRGG  197 (224)
Q Consensus       122 ~g~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~---~-~~~~~~~  197 (224)
                      +|....+.+|+|+++|+..+  .++++++|++||++++++|.+++|.|||+||++||||.+|+|++.+   . .+....|
T Consensus       133 ~~~~~~~~~R~S~~t~l~~~--~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g  210 (289)
T KOG1591|consen  133 TGHSTTSAVRTSSGTFLPDG--ASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGG  210 (289)
T ss_pred             cccccceeeEecceeEecCC--CCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccC
Confidence            56666677899999999984  4899999999999999999999999999999999999999999953   1 2345689


Q ss_pred             ceEEEEEEeccCCCCCceeecCCCCC
Q 027393          198 QRIATMLMYLSDNVEGGETYFPMVMT  223 (224)
Q Consensus       198 ~R~~T~l~YLNDv~~GGeT~Fp~l~~  223 (224)
                      +|++|+|+||+||++||+|+||.++.
T Consensus       211 ~RiaT~l~yls~v~~GG~TvFP~~~~  236 (289)
T KOG1591|consen  211 NRIATVLMYLSDVEQGGETVFPNLGM  236 (289)
T ss_pred             CcceeEEEEecccCCCCcccCCCCCC
Confidence            99999999999999999999999986

>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 2e-33
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 2e-33
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 2e-33
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 1e-31
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 3e-22
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 92/139 (66%), Gaps = 4/139 (2%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G + +  E
Sbjct: 25  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNL--KRGGQRI 200
               +I  IEKR++  + +P+EN E +QVL Y   Q Y+PH+DYF D  N   + GGQR+
Sbjct: 85  DS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRV 142
Query: 201 ATMLMYLSDNVEGGETYFP 219
            TMLMYL+   EGGET  P
Sbjct: 143 VTMLMYLTTVEEGGETVLP 161
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 2e-59
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 2e-56
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 3e-06
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 1e-05
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  185 bits (472), Expect = 2e-59
 Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)

Query: 78  VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMF 137
            +   +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G +
Sbjct: 11  GEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTW 70

Query: 138 LSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFN--LKR 195
            +  E    +I  IEKR++  + +P+EN E +QVL Y   Q Y+PH+DYF D  N   + 
Sbjct: 71  FAKGE--DSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 128

Query: 196 GGQRIATMLMYLSDNVEGGETYFP 219
           GGQR+ TMLMYL+   EGGET  P
Sbjct: 129 GGQRVVTMLMYLTTVEEGGETVLP 152
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query224
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.83
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.62
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 97.41
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 96.04
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 95.12
2fct_A 313 Syringomycin biosynthesis enzyme 2; mononuclear ir 93.66
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 92.95
2rdq_A 288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 92.85
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 92.03
3emr_A 310 ECTD; double stranded beta helix, oxidoreductase; 91.94
2a1x_A 308 Phytanoyl-COA dioxygenase; beta jelly roll, double 91.1
3gja_A 319 CYTC3; halogenase, beta barrel, biosynthetic prote 86.5
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=4.5e-37  Score=258.64  Aligned_cols=147  Identities=46%  Similarity=0.760  Sum_probs=132.6

Q ss_pred             eecCcceEEeecCCcEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCcccccccccceeeeCCCCcchHHHHHHHH
Q 027393           74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEK  153 (224)
Q Consensus        74 rlaplK~E~Ls~~P~I~~~~dfLs~~Ec~~Li~~a~~~l~~s~v~~~~~g~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~  153 (224)
                      .++|.|+|+||++|+|++||||||++||++|++++++.++++++.++.+|....+++|+|+++|+...+  ++++++|++
T Consensus         7 ~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~--~~~~~~i~~   84 (224)
T 2jig_A            7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE--DSVISKIEK   84 (224)
T ss_dssp             CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTC--SHHHHHHHH
T ss_pred             cccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCC--CHHHHHHHH
Confidence            478999999999999999999999999999999999999999998877677778899999999998753  689999999


Q ss_pred             HHHHhcCCCccccceeeeEEcCCCCCccccccCCCCcccC--CCCCceEEEEEEeccCCCCCceeecCCCC
Q 027393          154 RISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNL--KRGGQRIATMLMYLSDNVEGGETYFPMVM  222 (224)
Q Consensus       154 Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~--~~~~~R~~T~l~YLNDv~~GGeT~Fp~l~  222 (224)
                      ||.+++|+|...+|.+||+||++||+|++|+|++....+.  ..+++|++|+++||||+++||||+||.++
T Consensus        85 ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~  155 (224)
T 2jig_A           85 RVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAE  155 (224)
T ss_dssp             HHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSS
T ss_pred             HHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcc
Confidence            9999999999999999999999999999999998653221  24579999999999999999999999873
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query224
d2fcta1 308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 93.79
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.7
d2a1xa1 296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 92.98
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 83.58
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

Probab=93.79  E-value=0.088  Score=42.38  Aligned_cols=127  Identities=14%  Similarity=0.003  Sum_probs=62.0

Q ss_pred             cCCcEEEEcCCCCHHHHHHHHHHhcCCCcc---ceeeeCCCCCcccccccccceeeeCCCCcchHHH------HHHHHHH
Q 027393           85 WSPRILVLHNFLSMEECDYLRAIARPHLQV---STVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMI------QAIEKRI  155 (224)
Q Consensus        85 ~~P~I~~~~dfLs~~Ec~~Li~~a~~~l~~---s~v~~~~~g~~~~s~~R~S~~~~l~~~~~~~~v~------~~i~~Ri  155 (224)
                      .+.| +++.|+||++|++.+.+..+.....   ....+. .........+. ...++.     ++.+      .+|.+.+
T Consensus        15 ~~Gy-l~i~~~~s~~ei~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-----~~~~~~l~~~p~il~~v   86 (308)
T d2fcta1          15 KNGF-IGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDL-DAISGGTNIAN-YDRHLD-----DDFLASHICRPEICDRV   86 (308)
T ss_dssp             HHSE-EEEEESSCHHHHHHHHHHHHHHHTCCTTCSCCCC-CC----CGGGG-BCGGGT-----CHHHHHHTTCHHHHHHH
T ss_pred             hCCE-EECcCccCHHHHHHHHHHHHHHHhhccccccccc-ccccCccceee-ehhhhc-----CHHHHHhhcCchhhhHH
Confidence            3455 4789999999999998765421110   000000 00000011111 111111     1222      2334555


Q ss_pred             HHhcCCCccccceeeeEEcCCCCCccccccCCCCccc--------CCCCCceEEEEEEeccCCC-C-CceeecC
Q 027393          156 SVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFN--------LKRGGQRIATMLMYLSDNV-E-GGETYFP  219 (224)
Q Consensus       156 ~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~--------~~~~~~R~~T~l~YLNDv~-~-GGeT~Fp  219 (224)
                      +.+.|-+.......-+.+...++.+.||.|.......        ........+|+.++|.|+. + |+-.+.|
T Consensus        87 ~~llG~~~~~~~~~~~~k~p~~~~~~wHqD~~y~~~~~~~~~~~~~~~~~~~~vtvwiaL~D~~~enG~l~viP  160 (308)
T d2fcta1          87 ESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQFIP  160 (308)
T ss_dssp             HHHHCSCEEEEEEEEEEECTTCCEECCBCCSSSCTTTSSCSEECCTTSCCCSCEEEEEESSCBCTTBTCEEEET
T ss_pred             HHhhcccceeeecccccccccccccccccccccccCCCCcccccCCCCCCCceEEEEEecccccccceeEEEee
Confidence            5666644332222334455555678899997543210        0112346899999999974 3 4444445
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure