Citrus Sinensis ID: 027399

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNSYENSAIASFGEASHSMGTFEQWSFQDSDDLQSVAFGYIQNS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtgsgspcgackflrrkcvkgcvfapyfcheqgaTHFAAIHKVFGASNVSKLLahlpvsdrceAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILngsvttnpnhekyygklpshpqdvqswfhhqedsdmerlfssnlhnqgaatmpyctdqngfmnpnslgnsyensaiasfgeashsmgtfeqwsfqdsddlQSVAFGYIQNS
Flexible Loop (DISEMBL)
mtgsgspcgaCKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNSYENSAIASFGEASHSMGTFEQWSFQDSDDLQSVAFGYIQNS
Low Complexity Region (SEG)
MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNSYENSAIASFGEASHSMGTFEQWSFQDSDDLQSVAFGYIQNS
Disordered region (IsUnstruct)
*******CGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLK*************************************************************YC************************************W**********VAFGY****
Disordered Region (DISOPRED)
*****SP**ACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQA******************************************************************************************************DDLQSVAFGYIQ**
Disordered Region (DISEMBL)
MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNSYENSAIASFGEASHSMGTFEQWSFQDSDDLQSVAFGYIQNS
Disordered Region (DISPRO)
****GSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNSYENSAIASFGEASHSMGTFEQWSFQDSDDLQSVAFGYIQNS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHxxxxxxxxxxxxxxxxxxxxxxxxxxxxGSVTTNPNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNSYENSAIASFGEASHSMGTFEQWSFQDSDDLQSVAFGYIQNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q9M2J7	218	LOB domain-containing pro	yes	no	0.875	0.899	0.562	1e-58
Q9SLB6	244	LOB domain-containing pro	no	no	0.973	0.893	0.504	8e-56
Q9SJW5	188	LOB domain-containing pro	no	no	0.705	0.840	0.567	1e-46
Q9SLB7	245	LOB domain-containing pro	no	no	0.477	0.436	0.738	5e-43
O81322	220	LOB domain-containing pro	no	no	0.473	0.481	0.688	7e-40
Q9SRV3	273	LOB domain-containing pro	no	no	0.455	0.373	0.715	2e-39
O22131	262	LOB domain-containing pro	no	no	0.446	0.381	0.72	8e-38
Q9LHS8	177	LOB domain-containing pro	no	no	0.477	0.604	0.644	4e-36
O81323	228	LOB domain-containing pro	no	no	0.446	0.438	0.7	1e-35
O22132	191	LOB domain-containing pro	no	no	0.705	0.827	0.474	1e-34

>sp|Q9M2J7|LBD29_ARATH LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/224 (56%), Positives = 152/224 (67%), Gaps = 28/224 (12%)

Query: 7   PCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAV 66
           PCGACKFLRRKC KGCVFAPYFCHEQGA+HFAAIHKVFGASN SKLL+HLP+SDRCEAA+
Sbjct: 11  PCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAI 70

Query: 67  TISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPNHEKY 126
           TISYEAQARLQDPIYGCVSHIFALQ QVVNLQA+L  LK+QAAQS++     T+ N   Y
Sbjct: 71  TISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPTSENPNSY 130

Query: 127 YG---KLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNS 183
           YG   K P H  D Q+ +HH + + +       ++  G++     T Q+G    ++  +S
Sbjct: 131 YGDTTKAPYH-HDHQNIYHHHDQTHL-------VYQTGSSG----TVQHG----DATESS 174

Query: 184 YENSAIASFGEAS------HSMGTFEQWSFQDSDDLQSVAFGYI 221
           Y N   +  GE S        + TF Q   +   +LQS  FGYI
Sbjct: 175 YHNETSSGMGEFSIYSDLEQHLNTFNQDHLK---ELQSANFGYI 215

Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLB6|LBD17_ARATH LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1

 Score =  216 bits (551), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 123/244 (50%), Positives = 154/244 (63%), Gaps = 26/244 (10%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGACKFLRR+CVKGCVFAPYFCHEQGA+HFAAIH+VFGASN SKLL+HLP+ D
Sbjct: 1   MTGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMED 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSIL--NGSVT 118
           R EAA TI YEAQAR QDPIYGCVSHIF+LQ QVVNLQ QL  LK+QA QS++  +    
Sbjct: 61  RREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSI 120

Query: 119 TNPNHEKYYGKLPSHPQD---------VQSWFHHQEDSDMERLFSSNLHNQGAATMPYC- 168
            NPN+  Y    P + Q+           S    +++SD++ + +S  H     T P+  
Sbjct: 121 ENPNY--YQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDLKNIMTSCYHQMEIETTPFTG 178

Query: 169 ----TDQNGFMNPNSLGNSYENSAIASFGEAS-------HSMGTFEQWSFQDSDDLQSVA 217
               T    +   +S G S E  ++++ GE S       H   TF Q+     ++L S +
Sbjct: 179 AGGDTMAGSYYYNSSSGCSEELKSVSTNGEFSKYSELDQHLTNTFNQYR-HGGNNLISES 237

Query: 218 FGYI 221
            GYI
Sbjct: 238 LGYI 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJW5|LBD14_ARATH LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 116/162 (71%), Gaps = 4/162 (2%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           M G GSPCG CKFLRRKCV+GCVFAPYFC+E+G+++FAAIHKVFGASN SKL++HLP  D
Sbjct: 1   MGGLGSPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHD 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RC+A  TISYEA +RL DPIYGCVS IF+LQ QVV+LQAQ+  L+E+A++         N
Sbjct: 61  RCDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASRRFPQDDPGCN 120

Query: 121 -PNHEKYYGKLPSHPQDVQSWFHHQ-EDSDMERLFSSNLHNQ 160
               EK   +    PQD+ +WFH    DSD + +  +   N+
Sbjct: 121 MKQQEKVLAQ--QMPQDLHNWFHQGILDSDFDPMSGTTRDNE 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLB7|LBD16_ARATH LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 89/107 (83%)

Query: 3   GSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRC 62
           G+GSPCGACKFLRRKC   C+FAPYF  EQGA  FAAIHKVFGASNVSKLL ++P+ DRC
Sbjct: 11  GTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRC 70

Query: 63  EAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA 109
           EA VTI+YEAQARL DP+YGCVSHIFALQ QV  LQ+Q+  +K Q A
Sbjct: 71  EAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19.

Arabidopsis thaliana (taxid: 3702)

>sp|O81322|LBD31_ARATH LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2

 Score =  164 bits (414), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 86/106 (81%)

Query: 2   TGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61
           TG G PCGACKFLRRKCV  CVFAPYF   +G +HF A+HKVFGASN SKLL  +P S R
Sbjct: 6   TGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRR 65

Query: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQ 107
            +A VT++YEA ARL+DP+YGCV HIFALQHQV+NLQA+LA ++ Q
Sbjct: 66  LDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQ 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRV3|LBD20_ARATH LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 86/102 (84%)

Query: 6   SPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAA 65
           SPCGACKFLRRKCV GC+FAP+F  +QGA  FAA+HKVFGASNVSKLL H+PV+ R +A 
Sbjct: 50  SPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAV 109

Query: 66  VTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQ 107
           VTISYEAQARL DP+YGCVS I ALQ QV +LQA+L+ ++ Q
Sbjct: 110 VTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQ 151

Arabidopsis thaliana (taxid: 3702)

>sp|O22131|LBD18_ARATH LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 85/100 (85%)

Query: 10  ACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTIS 69
           ACKFLRRKCV GC+FAPYF  EQG+ +FAA+HKVFGASNVSKLL H+PV  R +A VTI 
Sbjct: 40  ACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTIC 99

Query: 70  YEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA 109
           YEAQAR++DPIYGCV+HIFALQ QVVNLQA+++ L+   A
Sbjct: 100 YEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHS8|LBD33_ARATH LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 83/107 (77%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           M   GS CGACKFLRRKC + CVF+PYF +EQ ++HFAA+HKVFGASNVSK L HLP   
Sbjct: 1   MASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQ 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQ 107
           R  AA+TISYEA +R++DP+YGCV+HIFAL  QVV LQ ++  L  Q
Sbjct: 61  RNIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQ 107

Arabidopsis thaliana (taxid: 3702)

>sp|O81323|LBD30_ARATH LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 82/100 (82%)

Query: 10  ACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTIS 69
           ACKFLRRKCV GC+FAPYF  EQGA HFAA+HKVFGASNVSKLL H+P   R +A V+I 
Sbjct: 20  ACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSIC 79

Query: 70  YEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA 109
           +EAQARL+DPIYGCVSHI +LQ QVV+LQ +L+ L+   A
Sbjct: 80  FEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLA 119

Arabidopsis thaliana (taxid: 3702)

>sp|O22132|LBD19_ARATH LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/175 (47%), Positives = 105/175 (60%), Gaps = 17/175 (9%)

Query: 10  ACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTIS 69
           ACKFLRRKCVKGCVFAPYF  EQG   FAA+HKVFGASN SK+L  LP+  R +A VT+ 
Sbjct: 19  ACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLC 78

Query: 70  YEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKE----------QAAQSILNGSVTT 119
           YEA AR++DP+YG V H+F+LQHQV+NLQA+LA ++           Q+ Q +   S   
Sbjct: 79  YEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQRFPLQSPQQMQPPSF-- 136

Query: 120 NPNHEKYYGKLPSHPQDVQSWFHHQE----DSDMERLFSSNLHN-QGAATMPYCT 169
           +P H   Y   PS+   V    H  +    D D + L S  +     A  +P CT
Sbjct: 137 DPAHNNEYAMEPSNLDSVWGEEHLLQDGTGDGDFQELASQFVSRYLPAVKLPACT 191

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
147775931	232	hypothetical protein VITISV_037620 [Viti	0.977	0.943	0.683	3e-81
225437834	232	PREDICTED: LOB domain-containing protein	0.977	0.943	0.679	6e-81
255587844	225	LOB domain-containing protein, putative	0.950	0.946	0.682	1e-77
449468658	243	PREDICTED: LOB domain-containing protein	0.973	0.897	0.625	1e-70
388498660	236	unknown [Lotus japonicus]	0.933	0.885	0.640	4e-70
356545837	237	PREDICTED: LOB domain-containing protein	0.968	0.915	0.619	1e-69
449496954	243	PREDICTED: LOW QUALITY PROTEIN: LOB doma	0.973	0.897	0.616	2e-69
351727835	208	uncharacterized protein LOC100527324 [Gl	0.919	0.990	0.654	2e-68
356536819	239	PREDICTED: LOB domain-containing protein	0.973	0.912	0.608	6e-68
356505001	212	PREDICTED: LOB domain-containing protein	0.816	0.863	0.718	9e-68

>gi|147775931|emb|CAN75719.1| hypothetical protein VITISV_037620 [Vitis vinifera]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/237 (68%), Positives = 187/237 (78%), Gaps = 18/237 (7%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGACKFLRRKCV+GCVFAPYFCHEQGA HFAAIHKVFGASNVSKLL HLPVSD
Sbjct: 1   MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLGHLPVSD 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEAAVTI+YEAQARLQDPIYGCVSHIFALQ QVVNLQAQLASLKEQAAQS+ NGS   N
Sbjct: 61  RCEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAAQSLFNGSSAGN 120

Query: 121 PNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSL 180
            N EK++GKLPS+ QD QSWF   E+ +    F  NL +  + TMPY   Q+GF++P+ +
Sbjct: 121 LN-EKFFGKLPSYQQDFQSWF-QLENLNTVPQFDPNLAS-NSETMPY--SQSGFVDPSPM 175

Query: 181 GN------SYENSAIASFGEASHSMGTFE------QWSFQ-DSDDLQSVAFGYIQNS 224
            N        EN + ASF EASHSM + +      +W++Q D+D+LQSVAFGYI++S
Sbjct: 176 ENYKNSMFPEENVSFASFEEASHSMASLDMQGNRRKWAYQDDADELQSVAFGYIRHS 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437834|ref|XP_002263533.1| PREDICTED: LOB domain-containing protein 29 [Vitis vinifera] gi|297744117|emb|CBI37087.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/237 (67%), Positives = 187/237 (78%), Gaps = 18/237 (7%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGACKFLRRKCV+GCVFAPYFCHEQGA HFAAIHKVFGASNVSKLL HLPVSD
Sbjct: 1   MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLGHLPVSD 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEAAVTI+YEAQARLQDPIYGCVSHIFALQ QVVNLQAQLASLKEQA+QS+ NGS   N
Sbjct: 61  RCEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQASQSLFNGSSAGN 120

Query: 121 PNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSL 180
            N EK++GKLPS+ QD QSWF   E+ +    F  NL +  + TMPY   Q+GF++P+ +
Sbjct: 121 LN-EKFFGKLPSYQQDFQSWF-QLENLNTVPQFDPNLAS-NSETMPY--SQSGFVDPSPM 175

Query: 181 GN------SYENSAIASFGEASHSMGTFE------QWSFQ-DSDDLQSVAFGYIQNS 224
            N        EN + ASF EASHSM + +      +W++Q D+D+LQSVAFGYI++S
Sbjct: 176 ENYKNSMFPEENVSFASFEEASHSMASLDMQGNRRKWAYQDDADELQSVAFGYIRHS 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587844|ref|XP_002534416.1| LOB domain-containing protein, putative [Ricinus communis] gi|223525339|gb|EEF27968.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/236 (68%), Positives = 182/236 (77%), Gaps = 23/236 (9%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGACKFLRRKCV+GCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD
Sbjct: 1   MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEAAVTISYEAQARLQDPIYGCVSHIFALQ QV+NLQAQLASLKEQAAQ+++NGS T N
Sbjct: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLQAQLASLKEQAAQTLINGSATAN 120

Query: 121 PNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSL 180
           PN +KYYGK  S PQD+QSWF   E+S+    F+ +    G         +NGF++P S+
Sbjct: 121 PN-DKYYGKPSSLPQDLQSWF-QSENSNTIPQFNPSFTTAG---------ENGFLDPYSM 169

Query: 181 GNSYENSAIA----SFGEASHSMGT---FEQWS-----FQDSDDLQSVAFGYIQNS 224
           G+   +S  A    SF EAS S       +QW+      QD DDL+SVAFGYIQ+S
Sbjct: 170 GSYGSSSTTATSFDSFEEASSSFDMQTDNKQWNTSYHHHQDPDDLRSVAFGYIQHS 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468658|ref|XP_004152038.1| PREDICTED: LOB domain-containing protein 29-like [Cucumis sativus]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/240 (62%), Positives = 170/240 (70%), Gaps = 22/240 (9%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGACKFLRRKCV+GCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLA LP+++
Sbjct: 1   MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPITE 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEAAVTISYEAQARLQDPIYGCVSHIFALQ QVV+LQAQLASLKEQAA+SI+N S    
Sbjct: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASSNVG 120

Query: 121 PNHEKYYG-KLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNS 179
             +EK    K+PSHPQD+ SWF  ++ +       +   N   A+     D+N  +  NS
Sbjct: 121 GVNEKVNSRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNCASNANYYDENYRIMVNS 180

Query: 180 LGN-SYENSAIASFGEASHSMGTFE------------------QWSFQDS-DDLQSVAFG 219
             N +YEN  IA   E S S G+FE                  QWSF D+ DDLQSVAFG
Sbjct: 181 QSNGNYENHHIAKM-EESGSYGSFEETSGYSMYTLDQLHSNVQQWSFSDTVDDLQSVAFG 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498660|gb|AFK37396.1| unknown [Lotus japonicus]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 146/228 (64%), Positives = 167/228 (73%), Gaps = 19/228 (8%)

Query: 7   PCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAV 66
           PCGACKFLRRKCV+GCVFAPYFCHEQGATHFAAIHKVFGASNVSKLL++LPVSDRCEAAV
Sbjct: 13  PCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLSYLPVSDRCEAAV 72

Query: 67  TISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPNHEKY 126
           TISYEAQARLQDPIYGCVSHIF+LQ QV NLQAQLA LKEQAAQ+ LN S   +PN EKY
Sbjct: 73  TISYEAQARLQDPIYGCVSHIFSLQQQVANLQAQLAYLKEQAAQTGLNASSNESPN-EKY 131

Query: 127 YGKLPSH--PQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNSY 184
             K P++  PQD+QSWF   E+S+M   FS NL N  AAT  Y    N  M+ N +GN+Y
Sbjct: 132 LEK-PNNAFPQDLQSWF-QMENSNMGSEFSPNLSNNYAATQYY--GNNTLMDLNPIGNNY 187

Query: 185 ENSAIAS-----------FGEASHSMGTFEQ-WSFQDSDDLQSVAFGY 220
           +NS +                 S+ M    + W F +++DL SVAFGY
Sbjct: 188 QNSGVKDENSSFSSFEECSNSMSYDMQINSRTWGFDEAEDLHSVAFGY 235

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545837|ref|XP_003541340.1| PREDICTED: LOB domain-containing protein 29-like [Glycine max]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/234 (61%), Positives = 166/234 (70%), Gaps = 17/234 (7%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGACKFLRRKCV+GCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD
Sbjct: 1   MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEAAVTISYEAQARLQDPIYGCVSHIFALQ QVVNLQAQLA LKEQAAQS L+GS+  N
Sbjct: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLDGSINEN 120

Query: 121 PNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFM-NPNS 179
           P+ + +     + PQD+QSWF+   +S++   F  N+     +T  Y    N  M + N 
Sbjct: 121 PSEKLFEKSSSALPQDLQSWFNQVGNSNLGPEFLPNMCTN-LSTQHY--GNNALMEDLNP 177

Query: 180 LGNSYENSAIASFG------------EASHSMGTFEQ-WSFQDSDDLQSVAFGY 220
           +G +YE S                    S+ M T  + W F + +DL SVAFGY
Sbjct: 178 IGINYETSGAMEGNNSSSFDDSSNNYSMSYDMQTNRRTWGFHEVEDLHSVAFGY 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496954|ref|XP_004160273.1| PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 29-like [Cucumis sativus]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/240 (61%), Positives = 168/240 (70%), Gaps = 22/240 (9%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGAC FLRRKCV+GC FAPYFCHEQGATHFAAIHKVFGASNVSKLLA LP+++
Sbjct: 1   MTGSGSPCGACXFLRRKCVRGCXFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPITE 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEAAVTISYEAQARLQDPIYGCVSHIFALQ QVV+LQAQLASLKEQAA+SI+N S    
Sbjct: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASSNVG 120

Query: 121 PNHEKYYG-KLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNS 179
             +EK    K+PSHPQD+ SWF  ++ +       +   N   A+     D+N  +  NS
Sbjct: 121 GVNEKVNSRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNCASNANYYDENYRIMVNS 180

Query: 180 LGN-SYENSAIASFGEASHSMGTFE------------------QWSFQDS-DDLQSVAFG 219
             N +YEN  IA   E S S G+FE                  QWSF D+ DDLQSVAFG
Sbjct: 181 QSNGNYENHHIAKM-EESGSYGSFEETSGYSMYTLDQLHSNVQQWSFSDTVDDLQSVAFG 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727835|ref|NP_001238198.1| uncharacterized protein LOC100527324 [Glycine max] gi|255632089|gb|ACU16397.1| unknown [Glycine max]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/214 (65%), Positives = 159/214 (74%), Gaps = 8/214 (3%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGACKFL RKCV+GCVFAPYFCHEQG+THFAAIHKVFGASNVSK LAHLPVSD
Sbjct: 1   MTGSGSPCGACKFLIRKCVRGCVFAPYFCHEQGSTHFAAIHKVFGASNVSKHLAHLPVSD 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEAAVTISYEAQARLQDPIYGCV+HIFA Q QVV+LQAQL  L+EQA+Q  LNGS T N
Sbjct: 61  RCEAAVTISYEAQARLQDPIYGCVAHIFAPQQQVVSLQAQLVYLREQASQIYLNGSATEN 120

Query: 121 PNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSL 180
           PN EKY GK  + PQD+QSWF   E+S++   F  NL    +    Y  + N  + PN +
Sbjct: 121 PN-EKYLGKPTTFPQDLQSWF-QMENSNLASQFLPNLSTNPSTQ--YYGNTNTLVEPNPI 176

Query: 181 GNSYENSAIASFGEASHSMGTFEQWSFQDSDDLQ 214
           GN YENS      E S S  +F++     S D+Q
Sbjct: 177 GN-YENSGTV---EESISFSSFKESCNSMSYDMQ 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536819|ref|XP_003536931.1| PREDICTED: LOB domain-containing protein 29-like [Glycine max]

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 164/235 (69%), Gaps = 17/235 (7%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTG+GSPCGACKFLRRKCV+GCVFAPYFC EQGATHFAAIHKVFGASNVSKLLAHLPVSD
Sbjct: 1   MTGTGSPCGACKFLRRKCVRGCVFAPYFCQEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEAAVTISYEAQARLQDPIYGCVSHIFALQ QVVNLQAQLA LKEQAAQS LNG++  N
Sbjct: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGTINEN 120

Query: 121 PNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSL 180
           PN +       + PQD+QSWF   E+S++   F  N+     +T  Y  +     + N +
Sbjct: 121 PNEKLLEKSSAALPQDLQSWF-QLENSNLGPEFLPNMCT-NLSTQHYGNNALMMEDLNPI 178

Query: 181 GNSYENSA--------------IASFGEASHSMGTFEQ-WSFQDSDDLQSVAFGY 220
           G + ENS                 +    S+ M T  + W F + +DL SVAFGY
Sbjct: 179 GVNNENSGAMEESSSFSSFDESSNNSYSMSYDMQTNRRTWGFHEVEDLHSVAFGY 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505001|ref|XP_003521281.1| PREDICTED: LOB domain-containing protein 29-like [Glycine max]

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 135/188 (71%), Positives = 146/188 (77%), Gaps = 5/188 (2%)

Query: 1   MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
           MTGSGSPCGACKFLRRKCV+GCVFAPYFCHEQG THFAAIHKVFGASNVSKLLAHLPVSD
Sbjct: 1   MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGVTHFAAIHKVFGASNVSKLLAHLPVSD 60

Query: 61  RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
           RCEA VTISYEAQARLQDPIYGCV+HIFALQ QVVNLQAQLA L+EQA Q  LN S T N
Sbjct: 61  RCEATVTISYEAQARLQDPIYGCVAHIFALQEQVVNLQAQLAYLREQAGQIYLNASATEN 120

Query: 121 PNHEKYYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSL 180
           PN EK  GK  + PQD+QS F   E+S+M   F  NL    +    Y  + N  M PN +
Sbjct: 121 PN-EKLLGKPTTFPQDLQSRF-QMENSNMASQFLPNLSTNPSTH--YYGNTNSLMEPNPI 176

Query: 181 GNSYENSA 188
           GN YE+S 
Sbjct: 177 GN-YESSG 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2085420	218	LBD29 "lateral organ boundarie	0.933	0.958	0.563	1.5e-58
TAIR|locus:2053813	244	ASL15 "ASYMMETRIC LEAVES 2-lik	0.888	0.815	0.529	1.3e-52
TAIR|locus:2042501	188	LBD14 "LOB domain-containing p	0.705	0.840	0.567	5.6e-45
TAIR|locus:2050951	262	LBD18 "LOB domain-containing p	0.866	0.740	0.475	1.2e-40
TAIR|locus:2053807	245	LBD16 "lateral organ boundarie	0.477	0.436	0.738	1.6e-40
TAIR|locus:2079354	273	LBD20 "LOB domain-containing p	0.553	0.454	0.624	4.3e-38
TAIR|locus:2126866	220	LBD31 "LOB domain-containing p	0.5	0.509	0.666	1.9e-37
TAIR|locus:2126881	228	JLO "JAGGED LATERAL ORGANS" [A	0.477	0.469	0.700	1.9e-37
TAIR|locus:2050862	191	LBD19 "LOB domain-containing p	0.745	0.874	0.477	1.7e-36
TAIR|locus:2152820	177	LBD33 "LOB domain-containing p	0.535	0.677	0.601	1.1e-34

TAIR|locus:2085420 LBD29 "lateral organ boundaries-domain 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 128/227 (56%), Positives = 153/227 (67%)

Query:     2 TGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61
             + SGSPCGACKFLRRKC KGCVFAPYFCHEQGA+HFAAIHKVFGASN SKLL+HLP+SDR
Sbjct:     6 SSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDR 65

Query:    62 CEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNP 121
             CEAA+TISYEAQARLQDPIYGCVSHIFALQ QVVNLQA+L  LK+QAAQS++     T+ 
Sbjct:    66 CEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPTSE 125

Query:   122 NHEKYYG---KLPSHPQDVQSWFHHQEDSDME-RLFSSNLHNQGAATMPYCTDQNGFMNP 177
             N   YYG   K P H  D Q+ +HH + + +  +  SS     G AT      ++ + N 
Sbjct:   126 NPNSYYGDTTKAPYH-HDHQNIYHHHDQTHLVYQTGSSGTVQHGDAT------ESSYHNE 178

Query:   178 NSLGNSYENSAIASFGEASHSMGTFEQWSFQDSDDLQSVAFGYIQNS 224
              S G        + + +    + TF Q   ++   LQS  FGYI  S
Sbjct:   179 TSSGMG----EFSIYSDLEQHLNTFNQDHLKE---LQSANFGYISFS 218

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2053813 ASL15 "ASYMMETRIC LEAVES 2-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 115/217 (52%), Positives = 145/217 (66%)

Query:     1 MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
             MTGSGSPCGACKFLRR+CVKGCVFAPYFCHEQGA+HFAAIH+VFGASN SKLL+HLP+ D
Sbjct:     1 MTGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMED 60

Query:    61 RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSIL--NGSVT 118
             R EAA TI YEAQAR QDPIYGCVSHIF+LQ QVVNLQ QL  LK+QA QS++  +    
Sbjct:    61 RREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSI 120

Query:   119 TNPNHEKYYGKLPSHPQDVQSWFHH---------QEDSDMERLFSSNLHNQGAATMPYCT 169
              NPN+  Y    P + Q+     HH         +++SD++ + +S  H     T P+ T
Sbjct:   121 ENPNY--YQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDLKNIMTSCYHQMEIETTPF-T 177

Query:   170 DQNGFMNPNSLGNSYENSAIASFGEASHSMGTFEQWS 206
                G    +++  SY  ++ +   E   S+ T  ++S
Sbjct:   178 GAGG----DTMAGSYYYNSSSGCSEELKSVSTNGEFS 210

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2042501 LBD14 "LOB domain-containing protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 92/162 (56%), Positives = 116/162 (71%)

Query:     1 MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
             M G GSPCG CKFLRRKCV+GCVFAPYFC+E+G+++FAAIHKVFGASN SKL++HLP  D
Sbjct:     1 MGGLGSPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHD 60

Query:    61 RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120
             RC+A  TISYEA +RL DPIYGCVS IF+LQ QVV+LQAQ+  L+E+A++         N
Sbjct:    61 RCDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASRRFPQDDPGCN 120

Query:   121 -PNHEKYYGKLPSHPQDVQSWFHHQE-DSDMERLFSSNLHNQ 160
                 EK   +    PQD+ +WFH    DSD + +  +   N+
Sbjct:   121 MKQQEKVLAQ--QMPQDLHNWFHQGILDSDFDPMSGTTRDNE 160

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050951 LBD18 "LOB domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 97/204 (47%), Positives = 128/204 (62%)

Query:     3 GSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRC 62
             G G PCGACKFLRRKCV GC+FAPYF  EQG+ +FAA+HKVFGASNVSKLL H+PV  R 
Sbjct:    33 GGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRS 92

Query:    63 EAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPN 122
             +A VTI YEAQAR++DPIYGCV+HIFALQ QVVNLQA+++ L+   A S+      T P 
Sbjct:    93 DAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA-SLELPQPQTRPQ 151

Query:   123 HEKYYGKL---PSHPQDVQSWFHHQEDSDMERLFS-SNLHNQGAATMPYCTDQNGFMNP- 177
                    L   P  P  +         S +   +  +++ +Q  ++  + T Q  F++P 
Sbjct:   152 PMPQPQPLFFTPPPPLAITDL--PASVSPLPSTYDLASIFDQTTSSSAWATQQRRFIDPR 209

Query:   178 NSLGNSYENSAIASF--GEASHSM 199
             +  G S  +S++A    GE SH +
Sbjct:   210 HQYGVSSSSSSVAVGLGGENSHDL 233

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010311 "lateral root formation" evidence=IMP

TAIR|locus:2053807 LBD16 "lateral organ boundaries-domain 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 79/107 (73%), Positives = 89/107 (83%)

Query:     3 GSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRC 62
             G+GSPCGACKFLRRKC   C+FAPYF  EQGA  FAAIHKVFGASNVSKLL ++P+ DRC
Sbjct:    11 GTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRC 70

Query:    63 EAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA 109
             EA VTI+YEAQARL DP+YGCVSHIFALQ QV  LQ+Q+  +K Q A
Sbjct:    71 EAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010311 "lateral root formation" evidence=IMP

TAIR|locus:2079354 LBD20 "LOB domain-containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 78/125 (62%), Positives = 95/125 (76%)

Query:     2 TGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61
             TG+ SPCGACKFLRRKCV GC+FAP+F  +QGA  FAA+HKVFGASNVSKLL H+PV+ R
Sbjct:    46 TGTASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRR 105

Query:    62 CEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQS-ILNGSVTTN 120
              +A VTISYEAQARL DP+YGCVS I ALQ QV +LQA+L+ ++ Q   S +   +V   
Sbjct:   106 HDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQLINSRVAMANVMQQ 165

Query:   121 PNHEK 125
               H +
Sbjct:   166 QTHHQ 170

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

GO:1900150 "regulation of defense response to fungus" evidence=IMP

TAIR|locus:2126866 LBD31 "LOB domain-containing protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 76/114 (66%), Positives = 89/114 (78%)

Query:     2 TGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61
             TG G PCGACKFLRRKCV  CVFAPYF   +G +HF A+HKVFGASN SKLL  +P S R
Sbjct:     6 TGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRR 65

Query:    62 CEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNG 115
              +A VT++YEA ARL+DP+YGCV HIFALQHQV+NLQA+LA ++ Q   S L G
Sbjct:    66 LDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQL--STLQG 117

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126881 JLO "JAGGED LATERAL ORGANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 75/107 (70%), Positives = 87/107 (81%)

Query:     3 GSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRC 62
             G G PCGACKFLRRKCV GC+FAPYF  EQGA HFAA+HKVFGASNVSKLL H+P   R 
Sbjct:    13 GGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRP 72

Query:    63 EAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA 109
             +A V+I +EAQARL+DPIYGCVSHI +LQ QVV+LQ +L+ L+   A
Sbjct:    73 DAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLA 119

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2050862 LBD19 "LOB domain-containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 86/180 (47%), Positives = 109/180 (60%)

Query:     3 GSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRC 62
             G   PCGACKFLRRKCVKGCVFAPYF  EQG   FAA+HKVFGASN SK+L  LP+  R 
Sbjct:    12 GGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRL 71

Query:    63 EAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA-------QSILNG 115
             +A VT+ YEA AR++DP+YG V H+F+LQHQV+NLQA+LA ++ + +       QS    
Sbjct:    72 DAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQRFPLQSPQQM 131

Query:   116 SVTT-NPNHEKYYGKLPSHPQDVQSWFHHQEDS----DMERLFSSNLHNQ-GAATMPYCT 169
                + +P H   Y   PS+   V    H  +D     D + L S  +     A  +P CT
Sbjct:   132 QPPSFDPAHNNEYAMEPSNLDSVWGEEHLLQDGTGDGDFQELASQFVSRYLPAVKLPACT 191

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2152820 LBD33 "LOB domain-containing protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 74/123 (60%), Positives = 89/123 (72%)

Query:     1 MTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSD 60
             M   GS CGACKFLRRKC + CVF+PYF +EQ ++HFAA+HKVFGASNVSK L HLP   
Sbjct:     1 MASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQ 60

Query:    61 RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQA---AQSILNGSV 117
             R  AA+TISYEA +R++DP+YGCV+HIFAL  QVV LQ ++  L  Q    + S  NGS 
Sbjct:    61 RNIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQ 120

Query:   118 TTN 120
               N
Sbjct:   121 LNN 123

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2J7	LBD29_ARATH	No assigned EC number	0.5625	0.875	0.8990	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007498001 SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (232 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	4e-52

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  163 bits (415), Expect = 4e-52
 Identities = 58/102 (56%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 7   PCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAV 66
           PC ACK LRRKC   CV APYF  EQ A  FA +HK+FGASNV+KLL  LP   R +A  
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPA-RFANVHKLFGASNVTKLLKALPPEQRDDAMR 59

Query: 67  TISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQA 108
           ++ YEA AR +DP+YGCV  I++LQ Q+  LQA+LA +K Q 
Sbjct: 60  SLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	80.97

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.1e-49  Score=311.76  Aligned_cols=101  Identities=52%  Similarity=0.935  Sum_probs=99.0

Q ss_pred             CChhhhhhhcCCCCCCccCcCCCCccCcchHHHHHHHhchhhHHHHHhcCCCcCHHHHHHHHHHHHhhcccCCCCCcHHH
Q 027399            7 PCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSH   86 (224)
Q Consensus         7 ~CAACK~lRRkC~~dCifAPYFPadq~~~~F~~vHKVFG~SNV~KmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvGi   86 (224)
                      +|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++|+++|.+||+||+|||++|.+||||||+|+
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~   79 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI   79 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence            79999999999999999999999998 79999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027399           87 IFALQHQVVNLQAQLASLKEQA  108 (224)
Q Consensus        87 I~~Lq~Qi~~lqaELa~~k~ql  108 (224)
                      |+.|+|||+++++||+.+++||
T Consensus        80 i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   80 ISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.97  E-value=4.5  Score=36.81  Aligned_cols=63  Identities=19%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             hHHHHHhcCCCcCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399           48 NVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQ  110 (224)
Q Consensus        48 NV~KmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~  110 (224)
                      |+..-|+......|...+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+++.
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~   73 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAI   73 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456677778899999999999999999999999999999999999999999999888775

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00