Citrus Sinensis ID: 027411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVYCGSFIAVTIIIHLWINFRWTTCWENKPIPAKLRLRVVSTLMLWQQLTSWRLQSDHHTTSCLY
Secondary Structure (PSIPRED)
ccccHHHHHHcccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccccEEEEEcccccccccEEEcccEEEEEccccccccEEEEEEEcccccccccccHHHHHHHHHHccHHHHHHHHHHHcccEEEEEEccccccccEEHHHHHHHHHHHHHHHcEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccccccccccccccccccccccEEEEEcccccHHccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccHcccccccccccEEcccccEEEEEccccccccccccccEEEEEEccccccccEEEEEEccccccHHccccHHHHHHHHcHHHHHHHHHHHHHHHHccccEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mastqcflhhhalsttpartsssqrhvsnikptQIVCRAQkqavqeddgsAVSRRLALTVLIGAAavgskvspadaaygesanvfgkpktntdflpyngdgfklsipskwnpskerefpgqvlryednfdsnsnvsviitptdkksitdygspeeflskvycgsFIAVTIIIHLWINFrwttcwenkpipaklRLRVVSTLMLWQQLTSWrlqsdhhttscly
Flexible Loop (DISEMBL)
mastqcflhhhalsttpartsssqrhVSNIKPTQIVCRAQKqavqeddgsAVSRRLALTVLIGAAAVGSKVSPADAAYGesanvfgkpktnTDFLPYNGDGFklsipskwnpsKEREFPGQVLRyednfdsnsnvsviitptdkksitDYGSPEEFLSKVYCGSFIAVTIIIHLWINFRWTTCWENKPIPAKLRLRVVSTLMLWQQLtswrlqsdhhttscly
Low Complexity Region (SEG)
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVYCGSFIAVTIIIHLWINFRWTTCWENKPIPAKLRLRVVSTLMLWQQLTSWRLQSDHHTTSCLY
Disordered region (IsUnstruct)
**********************************IVC**************VSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSI***************VLRYEDNFD*NSNVSVIITPTDKKSITDYGSPEEFLSKVYCGSFIAVTIIIHLWINFRWTTCWENKPIPAKLRLRVVSTLMLWQQLTSWRLQ**********
Disordered Region (DISOPRED)
*ASTQCFLH************************************************LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIIT*********YGSPEEFLSKVYCGSFIAVTIIIHLWINFRWTTCWENKPIPAKLRLRVVSTLMLWQQLTSWRLQSDH***SCLY
Disordered Region (DISEMBL)
MASTQCFLHHHAL***************NIKPTQIVCRA************VSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVYCGSFIAVTIIIHLWINFRWTTCWENKPIPAKLRLRVVSTLMLWQQLTSWR************
Disordered Region (DISPRO)
*******************************PTQIVCRAQKQAV****GSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVYCGSFIAVTIIIHLWINFRWTTCWENKPIPAKLRLRVVSTLMLWQQLTSWRLQS*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVYCGSFIAVTIIIHLWINFRWTTCWENKPIPAKLRLRVVSTLMLWQQLTSWRLQSDHHTTSCLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q9SLQ8	263	Oxygen-evolving enhancer	N/A	no	0.713	0.604	0.808	2e-70
Q7DM39	268	Oxygen-evolving enhancer	N/A	no	0.717	0.597	0.789	3e-69
P12302	267	Oxygen-evolving enhancer	N/A	no	0.717	0.599	0.745	2e-67
P93566	260	Oxygen-evolving enhancer	N/A	no	0.695	0.596	0.775	3e-67
P16059	259	Oxygen-evolving enhancer	N/A	no	0.704	0.606	0.781	4e-67
P29795	258	Oxygen-evolving enhancer	N/A	no	0.677	0.585	0.777	8e-67
P18212	265	Oxygen-evolving enhancer	N/A	no	0.713	0.6	0.774	2e-65
Q42029	263	Oxygen-evolving enhancer	yes	no	0.708	0.600	0.748	1e-63
Q04127	266	Oxygen-evolving enhancer	N/A	no	0.713	0.597	0.745	4e-63
O49080	264	Oxygen-evolving enhancer	N/A	no	0.713	0.602	0.723	3e-62

>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/162 (80%), Positives = 143/162 (88%), Gaps = 3/162 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLAL 58
           MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLAL
Sbjct: 1   MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREF
Sbjct: 60  TVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREF 119

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           PGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKV
Sbjct: 120 PGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKV 161

May be involved in the regulation of photosystem II.
Cucumis sativus (taxid: 3659)

>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2

 Score =  261 bits (667), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 149/166 (89%), Gaps = 6/166 (3%)

Query: 1   MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAV-QEDDGSAV--SR 54
           MASTQCFLH HALS++ ART+   SSQR+VS++KP Q+VCRAQKQ+  QEDDG++V  SR
Sbjct: 1   MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSR 60

Query: 55  RLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSK 114
           RLALTVLIGAAA+GSKVSPADAAYGE+ANVFGKPK NTDFL YNGDGFKL +P+KWNPSK
Sbjct: 61  RLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSK 120

Query: 115 EREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           E EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFL++V
Sbjct: 121 EVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQV 166

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1

 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 144/165 (87%), Gaps = 5/165 (3%)

Query: 1   MASTQCFLHHHALSTTPA--RTSSSQRHVS-NIKPTQIVCRAQKQAVQEDD--GSAVSRR 55
           MAST CFLHHHA  ++PA  R S++QR+ + +IKP QIVC+AQKQ   E +   S VSRR
Sbjct: 1   MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRR 60

Query: 56  LALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE 115
           LALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE
Sbjct: 61  LALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKE 120

Query: 116 REFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           +EFPGQVLRYEDNFD+ SN+SV++ PTDKKSITD+GSPE+FLS+V
Sbjct: 121 KEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQV 165

May be involved in the regulation of photosystem II.

Spinacia oleracea (taxid: 3562)

>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1

 Score =  254 bits (650), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 138/160 (86%), Gaps = 5/160 (3%)

Query: 2   ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           ASTQCFLH +HAL ++PARTSS    V + KP Q++CRAQKQ    +  +AVSRRLALT+
Sbjct: 3   ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTL 58

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL IP+KWNPSKE EFPG
Sbjct: 59  LIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPG 118

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           QVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKV
Sbjct: 119 QVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKV 158

May be involved in the regulation of photosystem II.

Solanum tuberosum (taxid: 4113)

>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1

 Score =  254 bits (648), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 135/160 (84%), Gaps = 3/160 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHH    TTP RT S QR V   KP  IVC+AQKQ    D  + VSRRLAL+V
Sbjct: 1   MASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSV 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGK KTNTD+LPYNGDGFKL +P+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           QVLRYEDNFD+ SNVSV++  TDKKSITDYGSPEEFLSKV
Sbjct: 118 QVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKV 157

May be involved in the regulation of photosystem II.

Pisum sativum (taxid: 3888)

>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1

 Score =  253 bits (646), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 126/162 (77%), Positives = 140/162 (86%), Gaps = 11/162 (6%)

Query: 2   ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGS--AVSRRLAL 58
           ASTQCFLH +HAL ++PARTSS    VS+ KP Q++CRAQKQ    DD S  AVSRRLAL
Sbjct: 3   ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLAL 54

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           T+LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL +P+KWNPSKE E+
Sbjct: 55  TLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEY 114

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           PGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKV
Sbjct: 115 PGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKV 156

May be involved in the regulation of photosystem II.

Solanum lycopersicum (taxid: 4081)

>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 142/164 (86%), Gaps = 5/164 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQ-AVQEDD--GSAVSRRL 56
           MASTQCFLHHHALST PART   +  V ++KP Q+ VCRAQKQ A QED+    +VSRRL
Sbjct: 1   MASTQCFLHHHALST-PARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRL 59

Query: 57  ALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKER 116
           ALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE 
Sbjct: 60  ALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEV 119

Query: 117 EFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+V
Sbjct: 120 EYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQV 163

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2

 Score =  242 bits (618), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/163 (74%), Positives = 144/163 (88%), Gaps = 5/163 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
           MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLA
Sbjct: 1   MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct: 59  LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           +PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V
Sbjct: 119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQV 161

May be involved in the regulation of photosystem II.

Arabidopsis thaliana (taxid: 3702)

>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1

 Score =  241 bits (614), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 141/165 (85%), Gaps = 6/165 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQ--AVQEDD--GSAVSRR 55
           MASTQCFLHHHALST PARTS  +  V ++K  Q+ VCRAQ +  A Q+D+    +VSRR
Sbjct: 1   MASTQCFLHHHALST-PARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRR 59

Query: 56  LALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE 115
           LALT+LIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE
Sbjct: 60  LALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKE 119

Query: 116 REFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
            E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+V
Sbjct: 120 VEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQV 164

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score =  238 bits (606), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 135/163 (82%), Gaps = 4/163 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSS--SQRHVSNIKPTQIVCRAQKQA-VQEDDGSAVSRRLA 57
           MAS+ CFL HHA ST PA TS   S R V  IKP+Q++CRAQK +   E+  +AVSRRLA
Sbjct: 1   MASSACFLLHHAPST-PATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLA 59

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LT+LIG+AAVG+K++PA+AAYGE+ANVFGK KTNTDFLPY GDGF L IP+KWNPSKE E
Sbjct: 60  LTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVE 119

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           FPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS V
Sbjct: 120 FPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTV 162

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
224085421	262	hypothetical protein POPTRDRAFT_818640 [	0.713	0.606	0.863	3e-77
225446775	259	PREDICTED: oxygen-evolving enhancer prot	0.708	0.610	0.868	6e-77
224062595	262	hypothetical protein POPTRDRAFT_551203 [	0.713	0.606	0.850	3e-76
388519835	259	unknown [Lotus japonicus]	0.704	0.606	0.875	8e-73
388513061	259	unknown [Lotus japonicus]	0.704	0.606	0.875	8e-73
388503344	259	unknown [Lotus japonicus]	0.704	0.606	0.868	5e-72
255561128	265	Oxygen-evolving enhancer protein 2, chlo	0.717	0.603	0.822	1e-71
356526942	262	PREDICTED: oxygen-evolving enhancer prot	0.708	0.603	0.827	2e-70
388515001	195	unknown [Lotus japonicus]	0.704	0.805	0.826	7e-70
449460024	263	PREDICTED: oxygen-evolving enhancer prot	0.713	0.604	0.808	1e-68

>gi|224085421|ref|XP_002307570.1| hypothetical protein POPTRDRAFT_818640 [Populus trichocarpa] gi|118488107|gb|ABK95873.1| unknown [Populus trichocarpa] gi|222857019|gb|EEE94566.1| hypothetical protein POPTRDRAFT_818640 [Populus trichocarpa]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/161 (86%), Positives = 151/161 (93%), Gaps = 2/161 (1%)

Query: 1   MASTQCFLHHHALSTTPAR-TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALT 59
           MAST CFLHHHAL TTPAR T SSQR V+N+KPTQ+ CRAQKQAVQE+D  AVSRRLALT
Sbjct: 1   MASTSCFLHHHAL-TTPARSTPSSQRQVANLKPTQLACRAQKQAVQEEDNGAVSRRLALT 59

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAA+GSKV+PADAAYGESAN+FGKPKT+TDFLPYNGDGFKLS+PSKWNPSKEREFP
Sbjct: 60  VLIGAAALGSKVAPADAAYGESANIFGKPKTDTDFLPYNGDGFKLSVPSKWNPSKEREFP 119

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           GQVLRYEDNFD+ SNVSV++ PTDKKSITDYGSPEEFLSKV
Sbjct: 120 GQVLRYEDNFDATSNVSVMVIPTDKKSITDYGSPEEFLSKV 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446775|ref|XP_002283048.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic [Vitis vinifera] gi|147787750|emb|CAN60827.1| hypothetical protein VITISV_001116 [Vitis vinifera]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 139/160 (86%), Positives = 151/160 (94%), Gaps = 2/160 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MAST CFLHHHALST P R SS QR + +++P+Q+VCRAQKQA  EDDG+AVSRRLALTV
Sbjct: 1   MASTACFLHHHALST-PTRVSS-QRQLPSLRPSQLVCRAQKQAANEDDGAAVSRRLALTV 58

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAA+G+KV+PADAAYGE+ANVFGKPKTNTDFLPYNG+GFKLSIPSKWNPSKEREFPG
Sbjct: 59  LIGAAAIGTKVNPADAAYGEAANVFGKPKTNTDFLPYNGEGFKLSIPSKWNPSKEREFPG 118

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV
Sbjct: 119 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062595|ref|XP_002300858.1| hypothetical protein POPTRDRAFT_551203 [Populus trichocarpa] gi|118487448|gb|ABK95552.1| unknown [Populus trichocarpa] gi|222842584|gb|EEE80131.1| hypothetical protein POPTRDRAFT_551203 [Populus trichocarpa]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 137/161 (85%), Positives = 149/161 (92%), Gaps = 2/161 (1%)

Query: 1   MASTQCFLHHHALSTTPAR-TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALT 59
           MAST CFLHHHAL TTPAR TSSSQR V N+KP Q+VCRAQKQAVQE+D   VSRRLALT
Sbjct: 1   MASTACFLHHHAL-TTPARSTSSSQRQVVNLKPAQLVCRAQKQAVQEEDDGVVSRRLALT 59

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAA+GSKV+PADAAYGESAN+FGKPKTNTDFLPYNGDGFKLS+P+KWNPSKEREFP
Sbjct: 60  VLIGAAALGSKVAPADAAYGESANIFGKPKTNTDFLPYNGDGFKLSVPAKWNPSKEREFP 119

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           GQVLRYEDNFD+ SN+SV++TPTD KSI DYGSPEEFLSKV
Sbjct: 120 GQVLRYEDNFDATSNLSVMVTPTDTKSIADYGSPEEFLSKV 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519835|gb|AFK47979.1| unknown [Lotus japonicus]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 140/160 (87%), Positives = 146/160 (91%), Gaps = 3/160 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IKP QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKPNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKV
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKV 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513061|gb|AFK44592.1| unknown [Lotus japonicus]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 140/160 (87%), Positives = 146/160 (91%), Gaps = 3/160 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IKP QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKPNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKV
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKV 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503344|gb|AFK39738.1| unknown [Lotus japonicus]

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 139/160 (86%), Positives = 145/160 (90%), Gaps = 3/160 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IK  QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKSNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKV
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKV 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561128|ref|XP_002521576.1| Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis] gi|223539254|gb|EEF40847.1| Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 149/163 (91%), Gaps = 3/163 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSS-SQRHVSNI-KPTQIVCRAQ-KQAVQEDDGSAVSRRLA 57
           MA+T CFLHH AL++TP R SS SQR VSN  KPTQ +CRA  KQ +QE+D S VSRRLA
Sbjct: 1   MATTGCFLHHPALTSTPNRLSSVSQRQVSNTTKPTQFICRASTKQPLQEEDLSLVSRRLA 60

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF+PYNGDGF+LS+PSKWNPSKERE
Sbjct: 61  LTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFMPYNGDGFQLSVPSKWNPSKERE 120

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           FPGQVLRYEDNFDSNSN+SV+ITPTDKKSITD+G+PEEFL+KV
Sbjct: 121 FPGQVLRYEDNFDSNSNLSVMITPTDKKSITDFGTPEEFLAKV 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526942|ref|XP_003532074.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Glycine max]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 145/162 (89%), Gaps = 4/162 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQE--DDGSAVSRRLAL 58
           MASTQCFLHHHAL TTP R +SSQR V + KP  IVC+AQKQ VQE  D  + VSRRLAL
Sbjct: 1   MASTQCFLHHHAL-TTPTR-ASSQRLVVSTKPNHIVCKAQKQVVQEGEDTTNIVSRRLAL 58

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAAVGSKV+PADAAYGE+ANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE E+
Sbjct: 59  TVLIGAAAVGSKVAPADAAYGEAANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEVEY 118

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           PGQVLRYEDNFDS SNV+V++T TDKKSITDYGSPEEFLS+V
Sbjct: 119 PGQVLRYEDNFDSTSNVAVMVTATDKKSITDYGSPEEFLSQV 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515001|gb|AFK45562.1| unknown [Lotus japonicus]

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 141/161 (87%), Gaps = 4/161 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQE-DDGSAVSRRLALT 59
           MASTQCFL+HHAL++   R SS QR V N KP Q+ C+AQKQA QE DD S VSRRLALT
Sbjct: 1   MASTQCFLYHHALTS---RASSIQRLVVNTKPNQVFCKAQKQATQEEDDASIVSRRLALT 57

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAAVGSKVS ADAAYGESANVFGKPKTNTDFLPYNGDGFKLS+PSKWNPSKE E+ 
Sbjct: 58  VLIGAAAVGSKVSRADAAYGESANVFGKPKTNTDFLPYNGDGFKLSVPSKWNPSKEVEYT 117

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           GQVLRYEDNFDS SNV V +TPTDKKSITDYGSPEEFLSKV
Sbjct: 118 GQVLRYEDNFDSTSNVVVTVTPTDKKSITDYGSPEEFLSKV 158

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460024|ref|XP_004147746.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Cucumis sativus] gi|449502131|ref|XP_004161551.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Cucumis sativus] gi|11134156|sp|Q9SLQ8.1|PSBP_CUCSA RecName: Full=Oxygen-evolving enhancer protein 2, chloroplastic; Short=OEE2; AltName: Full=23 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=23 kDa thylakoid membrane protein; AltName: Full=OEC 23 kDa subunit; AltName: Full=OEC23; Flags: Precursor gi|6691487|dbj|BAA89317.1| 23kDa polypeptide of the oxygen-evolving complex of photosystem II [Cucumis sativus]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/162 (80%), Positives = 143/162 (88%), Gaps = 3/162 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLAL 58
           MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLAL
Sbjct: 1   MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREF
Sbjct: 60  TVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREF 119

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           PGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKV
Sbjct: 120 PGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKV 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2033087	263	PSBP-1 "photosystem II subunit	0.708	0.600	0.748	2.3e-62

TAIR|locus:2033087 PSBP-1 "photosystem II subunit P-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 122/163 (74%), Positives = 144/163 (88%)

Query:     1 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
             MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLA
Sbjct:     1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58

Query:    58 LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
             LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct:    59 LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118

Query:   118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
             +PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V
Sbjct:   119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQV 161


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       223   0.00098  112 3  11 22  0.39    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.84u 0.19s 20.03t   Elapsed:  00:00:00
  Total cpu time:  19.84u 0.19s 20.03t   Elapsed:  00:00:00
  Start:  Fri May 10 14:12:45 2013   End:  Fri May 10 14:12:45 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=TAS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA;TAS

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42029	PSBP1_ARATH	No assigned EC number	0.7484	0.7085	0.6007	yes	no
Q9SLQ8	PSBP_CUCSA	No assigned EC number	0.8086	0.7130	0.6045	N/A	no
P16059	PSBP_PEA	No assigned EC number	0.7812	0.7040	0.6061	N/A	no
O49080	PSBP_FRIAG	No assigned EC number	0.7239	0.7130	0.6022	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•	•			•		0.606
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•	•			•		0.584
	gw1.XIII.568.1	SubName- Full=Putative uncharacterized protein; (212 aa)			•				•		0.524
	gw1.131.248.1	hypothetical protein (212 aa)			•				•		0.523
	grail3.0037013703	hypothetical protein (146 aa)			•	•					0.523
	gw1.II.1221.1	hypothetical protein (155 aa)			•	•					0.520
	estExt_fgenesh4_pg.C_LG_I1397	SubName- Full=Putative uncharacterized protein; (146 aa)			•	•					0.520
	estExt_Genewise1_v1.C_LG_XIV1543	SubName- Full=Putative uncharacterized protein; (151 aa)			•	•					0.519
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.507
	estExt_fgenesh4_pg.C_LG_VIII1474	SubName- Full=Putative uncharacterized protein; (287 aa)			•	•					0.507

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	6e-99
pfam01789	163	pfam01789, PsbP, PsbP	2e-25

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score =  287 bits (737), Expect = 6e-99
 Identities = 121/163 (74%), Positives = 135/163 (82%), Gaps = 8/163 (4%)

Query: 1   MASTQCFLHHHALSTTPARTSS---SQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
           MAST CFLH  AL +  A  SS   S R VS  +P+Q+VCRAQ     E+D SAVSRR A
Sbjct: 1   MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQ-----EEDNSAVSRRAA 55

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           L +L GAAA G+KVSPA+AAYGESANVFGKPKTNT FLPYNGDGFKL +PSKWNPSKERE
Sbjct: 56  LALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKERE 115

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKV 160
           FPGQVLR+EDNFD+ SN+SV++TPTDKKSITDYGSPEEFLSKV
Sbjct: 116 FPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKV 158

Length = 260

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 97.4 bits (243), Expect = 2e-25
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 85  FGKPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPT 142
             K KTN  F  Y    DG++   P+ W   +E    G  + + D  +S+ NVSV+I+P 
Sbjct: 1   ACKAKTNAGFQAYVDTDDGYEFLYPTGW--WREVVSDGPDVVFHDLIESDENVSVVISPV 58

Query: 143 DKK-SITDYGSPEEFLSKVY 161
           DKK S+ D GSPEE   ++ 
Sbjct: 59  DKKKSLEDLGSPEEVGERLL 78

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.96
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.92
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.89
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.83
PLN03152	241	hypothetical protein; Provisional	99.1

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=4.3e-57  Score=401.61  Aligned_cols=181  Identities=66%  Similarity=0.979  Sum_probs=159.2

Q ss_pred             CcchhhhhcccccCCCccccc---ccccccCCCCCceeeeecccccccccCCccchhHHHHHHHHHHHhhhcCCCccccc
Q 027411            1 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAA   77 (223)
Q Consensus         1 ma~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~Cra~k~~~~~~~~~~vsRR~aL~~l~gaAa~~s~v~pA~AA   77 (223)
                      ||||+|||||++++++....+   ++++.+...++++++|++|++.     .+.++||.+|++++|+++++++++|++||
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~srr~~l~~~~ga~a~~~~~~pa~aa   75 (260)
T PLN00042          1 MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQEED-----NSAVSRRAALALLAGAAAAGAKVSPANAA   75 (260)
T ss_pred             CcchhhhhhcccccchhhhcccccccccccCCCCCcceeeeccccc-----cccccHHHHHHHHHHHHHhhcccCchhhh
Confidence            999999999999955433211   4578899999999999999772     35689999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCccccccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCCHHHHH
Q 027411           78 YGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFL  157 (223)
Q Consensus        78 yae~AnvFg~pk~~~gF~~Y~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~kkSI~DlGsPEEv~  157 (223)
                      |||+|||||+||+++||++|++|||+|+||+||||++|++++|+|++|||+|+++|||+|+|+|++|++|+|||+||||+
T Consensus        76 y~~~anvfg~~k~~~gF~~y~~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l  155 (260)
T PLN00042         76 YGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFL  155 (260)
T ss_pred             hcchhhccCCCCCCCCCeEeeCCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999965


Q ss_pred             HHh----ccceeeeE-----------------------EEEEEEEEEEEEeeeecc
Q 027411          158 SKV----YCGSFIAV-----------------------TIIIHLWINFRWTTCWEN  186 (223)
Q Consensus       158 ~~L----~~g~~~a~-----------------------~~~~~~~~~f~~~~~~~~  186 (223)
                      +++    ++..+..+                       .++|++||+||+.++-.|
T Consensus       156 ~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad  211 (260)
T PLN00042        156 SKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTAD  211 (260)
T ss_pred             HHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCC
Confidence            554    33223221                       178999999999998654

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.96  E-value=1e-29  Score=228.30  Aligned_cols=143  Identities=19%  Similarity=0.256  Sum_probs=110.9

Q ss_pred             ccCCCCCceeeeecccccccccCCccchhHHHHHHHHH-HHhhhcCCCcccccccccccccCCCCCCCCccccccCCeeE
Q 027411           26 HVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIG-AAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKL  104 (223)
Q Consensus        26 ~~~~~~~~~v~Cra~k~~~~~~~~~~vsRR~aL~~l~g-aAa~~s~v~pA~AAyae~AnvFg~pk~~~gF~~Y~~DGYsF  104 (223)
                      ..++-+|..+.|..|..     ...+++||++|+..+. +..+.+.++ ...|++       .|+++..|+| +.|||+|
T Consensus        56 ~~~~~~~~~~~~~~~~~-----~~~~~~rr~~~~~~l~~~~~~~s~~~-~~~a~a-------~~~~l~~y~D-~~DGY~F  121 (286)
T PLN00059         56 SAKPDSPVAINCLTDAK-----QVCAVGRRKSMMMGLLMSGLIVSEAN-LPTAFA-------SIPVFREYID-TFDGYSF  121 (286)
T ss_pred             ccCCCCCeeeecccchh-----hhhhhhhhhhhHHHHHHHHHHHHhhc-Cchhhc-------CCcccceeEc-CCCCeEE
Confidence            34556667788998832     1458999999764442 333333332 224444       4567888888 8999999


Q ss_pred             ecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCC---CCCcccCCCHHHHHHHhccceeee--------------
Q 027411          105 SIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD---KKSITDYGSPEEFLSKVYCGSFIA--------------  167 (223)
Q Consensus       105 lyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~---kkSI~DlGsPEEv~~~L~~g~~~a--------------  167 (223)
                      +||+||   +||+..|+|++|||+|+.+|||||+|+|+.   +++|+|||+|+||+++|....+.+              
T Consensus       122 lYP~GW---i~V~~~G~DVvFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeL  198 (286)
T PLN00059        122 KYPQNW---IQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANI  198 (286)
T ss_pred             eCCCCC---eEeccCCCceEEeccCccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEE
Confidence            999999   999999999999999999999999999874   899999999999999996544332              


Q ss_pred             --EE----EEEEEEEEEEEeeeec
Q 027411          168 --VT----IIIHLWINFRWTTCWE  185 (223)
Q Consensus       168 --~~----~~~~~~~~f~~~~~~~  185 (223)
                        ..    .|||+||+||++.+-.
T Consensus       199 VsA~~Re~~DGktYY~lEY~Vks~  222 (286)
T PLN00059        199 LSTSSRVADDGKLYYQVEVNIKSY  222 (286)
T ss_pred             EEeeeEEccCCcEEEEEEEEEEcC
Confidence              11    3799999999998864

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.92  E-value=6.2e-25  Score=196.32  Aligned_cols=132  Identities=19%  Similarity=0.301  Sum_probs=99.9

Q ss_pred             cchhHHHHHHHHHHHhhhcCCCcccccccc-cccccCCC-CCCCCccccc-------------cCCeeEecCCCCCCCce
Q 027411           51 AVSRRLALTVLIGAAAVGSKVSPADAAYGE-SANVFGKP-KTNTDFLPYN-------------GDGFKLSIPSKWNPSKE  115 (223)
Q Consensus        51 ~vsRR~aL~~l~gaAa~~s~v~pA~AAyae-~AnvFg~p-k~~~gF~~Y~-------------~DGYsFlyPsgWnpskE  115 (223)
                      .+.||+.|.|++.+..++-.-.| .+...| +.+.|.+| ....||..|.             ..||+|+||+||+++++
T Consensus        42 ~~~rr~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~V  120 (263)
T PLN00067         42 VIHRRELLLGLALAPLILIAPEP-PAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRV  120 (263)
T ss_pred             hhHHHHHHhhhhhhhhhhccCCc-hhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCccc
Confidence            57899999888765444444333 333344 47788876 5678898876             67999999999966544


Q ss_pred             e------------eeCCceEEeeeCCCCCCceEEEEecC------CCCCcccCCCHHHHHHHhccceee---------eE
Q 027411          116 R------------EFPGQVLRYEDNFDSNSNVSVIITPT------DKKSITDYGSPEEFLSKVYCGSFI---------AV  168 (223)
Q Consensus       116 V------------~~~G~dv~FeD~~d~~eNVSV~Ispt------~kkSI~DlGsPEEv~~~L~~g~~~---------a~  168 (223)
                      -            +++|+|++|||++  ++||+|+|+|+      ++++|+|||+||||+++|+.....         ..
T Consensus       121 s~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eLLeA  198 (263)
T PLN00067        121 ANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDELLET  198 (263)
T ss_pred             cccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcceEEe
Confidence            3            2345999999955  67999999997      669999999999999999665443         11


Q ss_pred             ---EEEEEEEEEEEEeeeec
Q 027411          169 ---TIIIHLWINFRWTTCWE  185 (223)
Q Consensus       169 ---~~~~~~~~~f~~~~~~~  185 (223)
                         .++||+||+||+.|.-.
T Consensus       199 s~re~dGktYY~~E~~tp~a  218 (263)
T PLN00067        199 SVEKIGDQTYYKYVLETPFA  218 (263)
T ss_pred             eeEeeCCeEEEEEEEEecCC
Confidence               18999999999987643

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.89  E-value=5.2e-24  Score=175.44  Aligned_cols=111  Identities=33%  Similarity=0.566  Sum_probs=80.9

Q ss_pred             cccccccccccccCCCCCCCCcccc--ccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCC-Cccc
Q 027411           73 PADAAYGESANVFGKPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK-SITD  149 (223)
Q Consensus        73 pA~AAyae~AnvFg~pk~~~gF~~Y--~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~kk-SI~D  149 (223)
                      ++.++++..+|+++.+++..+|++|  ..|||+|+||+||   +|++++|+|++|+|+++..+||+|+|+|+.++ +|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW---~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~   78 (175)
T PF01789_consen    2 AALAALLSSANVACAAEASTGFQPYTDSDDGYSFLYPSGW---EEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLED   78 (175)
T ss_dssp             --------------STT--SSEEEEEECTTTEEEEEETTE---EEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGG
T ss_pred             ceeEEeeccchhhhcccCCCCceEEEcCCCCEEEECCCCC---eecCCCCeEEEEECcccccceEEEEEEecCCcCchhh
Confidence            3445666667777777778889998  6999999999999   99999999999999999999999999999666 9999


Q ss_pred             CCCHHHHHHHhccce-----------eeeE---EEEEEEEEEEEEeeeecc
Q 027411          150 YGSPEEFLSKVYCGS-----------FIAV---TIIIHLWINFRWTTCWEN  186 (223)
Q Consensus       150 lGsPEEv~~~L~~g~-----------~~a~---~~~~~~~~~f~~~~~~~~  186 (223)
                      ||+||||+++|..+.           .+..   +++||.||+||++..=.+
T Consensus        79 lGs~~~va~~l~~~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~  129 (175)
T PF01789_consen   79 LGSPEEVAERLLNGELASPGSGREAELISASEREVDGKTYYEYEYTVQSPN  129 (175)
T ss_dssp             G-SHHHHHHHHHHHCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred             cCCHHHHHHHHhhhhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCC
Confidence            999999999996432           2211   267999999999987655

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.83  E-value=5.7e-20  Score=164.55  Aligned_cols=128  Identities=23%  Similarity=0.364  Sum_probs=94.2

Q ss_pred             CccchhHHHHHHHHHHHhh--hcCCCccccc-cccccc-c--cCCCCCCCCccccc---------------cCCeeEecC
Q 027411           49 GSAVSRRLALTVLIGAAAV--GSKVSPADAA-YGESAN-V--FGKPKTNTDFLPYN---------------GDGFKLSIP  107 (223)
Q Consensus        49 ~~~vsRR~aL~~l~gaAa~--~s~v~pA~AA-yae~An-v--Fg~pk~~~gF~~Y~---------------~DGYsFlyP  107 (223)
                      ...++||.+|+.++.++.+  ++..+++.|+ ||-.|+ |  |..| ...||..|.               ...|+|+||
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~-~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP  120 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEP-DENGWRTYRRPEGKSGGHGVGWSEITPYSFKVP  120 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCc-cccceEEEecCccccCcCCCCccccCCeEEECC
Confidence            3478999999876655333  3333344444 775542 2  1222 235666655               478999999


Q ss_pred             CCCCCCceeeeC-----CceEEeeeCCCCCCceEEEEecC--------CCCCcccCCCHHHHHHHhcc---------cee
Q 027411          108 SKWNPSKEREFP-----GQVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVYC---------GSF  165 (223)
Q Consensus       108 sgWnpskEV~~~-----G~dv~FeD~~d~~eNVSV~Ispt--------~kkSI~DlGsPEEv~~~L~~---------g~~  165 (223)
                      +||   +|+.+.     |.++.|++..+..+||+|+|+|+        ++++|+|||+||||+++|+.         +..
T Consensus       121 ~GW---~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eL  197 (262)
T PLN00066        121 QGW---EEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKV  197 (262)
T ss_pred             CCC---eEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccce
Confidence            999   999887     66677777779999999999997        79999999999999999974         333


Q ss_pred             eeE---EEEEEEEEEEEE
Q 027411          166 IAV---TIIIHLWINFRW  180 (223)
Q Consensus       166 ~a~---~~~~~~~~~f~~  180 (223)
                      +..   ..+||+||+||+
T Consensus       198 l~a~~re~dGktYY~~E~  215 (262)
T PLN00066        198 LSMEVAEHSGRTYYQFEL  215 (262)
T ss_pred             eEeeeeecCCcEEEEEEE
Confidence            332   378999999999

>PLN03152 hypothetical protein; Provisional

Probab=99.10  E-value=1.4e-10  Score=103.16  Aligned_cols=132  Identities=21%  Similarity=0.346  Sum_probs=82.9

Q ss_pred             cchhHHHHHHHHHH-HhhhcCCCccccccccccc----ccCCCCCCCCccccccCCeeEecCCCCCCCcee-eeC-C---
Q 027411           51 AVSRRLALTVLIGA-AAVGSKVSPADAAYGESAN----VFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKER-EFP-G---  120 (223)
Q Consensus        51 ~vsRR~aL~~l~ga-Aa~~s~v~pA~AAyae~An----vFg~pk~~~gF~~Y~~DGYsFlyPsgWnpskEV-~~~-G---  120 (223)
                      ..+||+.+.-.+.+ +..+..-.|...++++..+    +-+.-.|.+..-.|-+|||+.-||..+...-|- ++. |   
T Consensus        30 ~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp~f~di~e~~~~~~g~~~  109 (241)
T PLN03152         30 GASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPPSFEDIMEPEDYNAGLSL  109 (241)
T ss_pred             cccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCCChhhhcChhhcccccce
Confidence            34566655332221 1111223455566666532    222223445555566999999999999332222 111 1   


Q ss_pred             ---------ceEEeeeCCCCCCceEEEEecC--------CCCCcccCCCHHHHHHHhccce-------ee--eEEEEEEE
Q 027411          121 ---------QVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVYCGS-------FI--AVTIIIHL  174 (223)
Q Consensus       121 ---------~dv~FeD~~d~~eNVSV~Ispt--------~kkSI~DlGsPEEv~~~L~~g~-------~~--a~~~~~~~  174 (223)
                               -..|| +--|.+|||||+|+|+        ++|+|+|||+|+||++.+.-+.       -+  .--.+||+
T Consensus       110 yg~~akp~~~~aRf-~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~vP~g~~~~saR~iel~~E~dGKt  188 (241)
T PLN03152        110 YGDKAKPRTFAARF-ASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFVPGGATLYSARTIKVKEEEGIRT  188 (241)
T ss_pred             ecCCCCCcceeeee-cCCCCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhCCCcccccccceeeeeeecCCce
Confidence                     12233 2347799999999996        7999999999999998887553       12  12378999


Q ss_pred             EEEEEEeee
Q 027411          175 WINFRWTTC  183 (223)
Q Consensus       175 ~~~f~~~~~  183 (223)
                      ||.+||.+.
T Consensus       189 YY~lEy~v~  197 (241)
T PLN03152        189 YYFYEFGRD  197 (241)
T ss_pred             eEEEEEEeC
Confidence            999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
2vu4_A	190	Structure Of Psbp Protein From Spinacia Oleracea At		2e-39
1v2b_A	177	Crystal Structure Of Psbp Protein In The Oxygen-Evo		5e-32

>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A Resolution Length = 190

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 80/84 (95%)
Query: 77  AYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVS 136
           AYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD+ SN+S
Sbjct: 5   AYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLS 64
Query: 137 VIITPTDKKSITDYGSPEEFLSKV 160
           V++ PTDKKSITD+GSPE+FLS+V
Sbjct: 65  VLVQPTDKKSITDFGSPEDFLSQV 88

>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving Complex Of Photosystem Ii From Higher Plants Length = 177

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 68/75 (90%)
Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60
Query: 146 SITDYGSPEEFLSKV 160
           SITD+GSPE+FLS+V
Sbjct: 61  SITDFGSPEQFLSQV 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	1e-55
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	4e-29
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	3e-11
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	2e-10

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  106 bits (265), Expect = 4e-29
 Identities = 60/75 (80%), Positives = 68/75 (90%)

Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60

Query: 146 SITDYGSPEEFLSKV 160
           SITD+GSPE+FLS+V
Sbjct: 61  SITDFGSPEQFLSQV 75

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 58.7 bits (141), Expect = 3e-11
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 92  TDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITP-TDKKSIT 148
           +    Y  + DG++   P  W   +  +       + D  ++  NVSV++      KS+ 
Sbjct: 6   SGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDV--VFHDIIETTENVSVVVNTVASTKSLE 63

Query: 149 DYGSPEEFLSKV 160
           + GSPEE   ++
Sbjct: 64  ELGSPEEVGDRL 75

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 98  NGDGFKLSIPSKW-NPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD-KKSITDYGSPEE 155
             DG++   P+ W     +   PG  + + D  + + N+SVII+     K++TD G+  +
Sbjct: 20  TKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD 79

Query: 156 FLSKVY 161
              +  
Sbjct: 80  VGYRFM 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.93
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.7
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.8

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.93  E-value=1e-26  Score=193.53  Aligned_cols=100  Identities=61%  Similarity=0.930  Sum_probs=81.4

Q ss_pred             CCCCCCCCccccccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCCHHHHHHHhccce-
Q 027411           86 GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVYCGS-  164 (223)
Q Consensus        86 g~pk~~~gF~~Y~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~kkSI~DlGsPEEv~~~L~~g~-  164 (223)
                      |+||..+||++|.+|||+|+||++|+++++++++|+|++|+|+++.++||+|+|+|+++++|+|||+||||++++++.. 
T Consensus         1 ~~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~   80 (177)
T 1v2b_A            1 GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLG   80 (177)
T ss_dssp             ------CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred             CCCCCCCCceEEecCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999766654332 


Q ss_pred             ---eee-----------------------EEEEEEEEEEEEEeeeec
Q 027411          165 ---FIA-----------------------VTIIIHLWINFRWTTCWE  185 (223)
Q Consensus       165 ---~~a-----------------------~~~~~~~~~~f~~~~~~~  185 (223)
                         +..                       .+++|++||.||+.++-.
T Consensus        81 ~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~  127 (177)
T 1v2b_A           81 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTA  127 (177)
T ss_dssp             -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             HHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecC
Confidence               221                       127899999999998743

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.70  E-value=1.1e-21  Score=160.14  Aligned_cols=90  Identities=19%  Similarity=0.327  Sum_probs=78.5

Q ss_pred             CCccccc--cCCeeEecCCCCCCCceeeeC----CceEEeeeCCCCCCceEEEEecCCC-CCcccCCCHHHHHHHhccce
Q 027411           92 TDFLPYN--GDGFKLSIPSKWNPSKEREFP----GQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVYCGS  164 (223)
Q Consensus        92 ~gF~~Y~--~DGYsFlyPsgWnpskEV~~~----G~dv~FeD~~d~~eNVSV~Ispt~k-kSI~DlGsPEEv~~~L~~g~  164 (223)
                      .||++|+  .|||+|+||++|   ++++++    |+|++|+|+++.++||+|+|+|+.+ ++|+|||+||||+++|....
T Consensus        12 ~g~~~y~d~~~gy~f~~P~gW---~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~   88 (170)
T 2lnj_A           12 ASLQRYSDTKDGYEFLYPNGW---IGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV   88 (170)
Confidence            3455555  999999999999   777888    9999999999999999999999977 99999999999999998764


Q ss_pred             eeeE--------------EEEEEEEEEEEEeeee
Q 027411          165 FIAV--------------TIIIHLWINFRWTTCW  184 (223)
Q Consensus       165 ~~a~--------------~~~~~~~~~f~~~~~~  184 (223)
                      +..+              +++|+.||.||+++.=
T Consensus        89 ~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~  122 (170)
T 2lnj_A           89 NDASQGDRQAELINAEARDEDGQVYYTLEYRVLV  122 (170)
Confidence            4422              3789999999999765

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.80  E-value=2.9e-20  Score=149.66  Aligned_cols=91  Identities=22%  Similarity=0.391  Sum_probs=76.6

Q ss_pred             CCccccc--cCCeeEecCCCCCCCceeeeC-CceEEeeeCCCCCCceEEEEecCCC-CCcccCCCHHHHHHHhccce---
Q 027411           92 TDFLPYN--GDGFKLSIPSKWNPSKEREFP-GQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVYCGS---  164 (223)
Q Consensus        92 ~gF~~Y~--~DGYsFlyPsgWnpskEV~~~-G~dv~FeD~~d~~eNVSV~Ispt~k-kSI~DlGsPEEv~~~L~~g~---  164 (223)
                      .||..|.  .|||+|+||++|   ++++++ |+|++|+|+++..+||+|+|+|+.+ ++|+|||+||||+++|....   
T Consensus         6 ~g~~~~~D~~~gysf~~P~~W---~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~   82 (165)
T 2xb3_A            6 SGLQAYVDSYDGYEFLYPRGW---VQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAP   82 (165)
T ss_dssp             CCEEEEEETTTTEEEEEETTE---EEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSC
T ss_pred             CCceEEEcCCCCEEEEcCCCC---eEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcC
Confidence            4566666  899999999999   889998 9999999999999999999999966 99999999999998886532   


Q ss_pred             --------eeeEE---EEEEEEEEEEEeeeec
Q 027411          165 --------FIAVT---IIIHLWINFRWTTCWE  185 (223)
Q Consensus       165 --------~~a~~---~~~~~~~~f~~~~~~~  185 (223)
                              .+-..   ++|+.||.|||++.=.
T Consensus        83 ~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~  114 (165)
T 2xb3_A           83 SESGRSSALIAATSQKADDKTYYILEYAVTLP  114 (165)
T ss_dssp             TTSSCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             CCCCcceEEEEeeeeecCCceEEEEEEEEecC
Confidence                    22222   5789999999996543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	3e-27

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  100 bits (249), Expect = 3e-27
 Identities = 55/69 (79%), Positives = 62/69 (89%)

Query: 92  TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYG 151
           TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+G
Sbjct: 1   TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFG 60

Query: 152 SPEEFLSKV 160
           SPE+FLS+V
Sbjct: 61  SPEQFLSQV 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.89

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.89  E-value=2.7e-24  Score=173.50  Aligned_cols=92  Identities=61%  Similarity=0.890  Sum_probs=81.6

Q ss_pred             CCccccccCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCCHHHHHHHhccceee-----
Q 027411           92 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVYCGSFI-----  166 (223)
Q Consensus        92 ~gF~~Y~~DGYsFlyPsgWnpskEV~~~G~dv~FeD~~d~~eNVSV~Ispt~kkSI~DlGsPEEv~~~L~~g~~~-----  166 (223)
                      ++|+||++|||+|+||+||+++++.+.+|+|++|+|+++..+||+|+|+|+++++|+|||+||++++++++....     
T Consensus         1 ~~~~~y~~dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~~   80 (171)
T d1v2ba_           1 TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSG   80 (171)
T ss_dssp             CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-------
T ss_pred             CCcccccCCCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhcc
Confidence            579999999999999999998888889999999999999999999999999999999999999999998655421     


Q ss_pred             -------------------eE---EEEEEEEEEEEEeee
Q 027411          167 -------------------AV---TIIIHLWINFRWTTC  183 (223)
Q Consensus       167 -------------------a~---~~~~~~~~~f~~~~~  183 (223)
                                         ..   .++|+.||.||++++
T Consensus        81 ~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~  119 (171)
T d1v2ba_          81 KTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTR  119 (171)
T ss_dssp             -----------CCCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccccccccccccceeEEEEeeeeecCCEEEEEEEEEEe
Confidence                               01   267899999999875