Citrus Sinensis ID: 027452

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MLIIYLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKIGKVQLEPEQSWTAKQHLSIN
cEEEEEccccccccEEcccccccccccccEEEccccEEEEEEcccccEEEEEEEEccccccccccccEEEEEEEEEccccEEEEEEEEEcccccEEEEEccccEEEEEEccEEEEcccccEEEEcccccccccccccccccccccccccEEEcccccEEEEEcccccEEEEEEcccccEEEcccccccccccccEEEEcccccccEEEccccEEEEEEEEEEc
cEEEEEEEccccccccccccccccccccccEEcccEEEEccccccccEEEEEEEcccccccccccccEEEEEEEEEccccEEEEEEEEccccccEEEHHHHHHEEEEEccEEEEEcccccHHHHccccccccccEEEcccEEEEcccccEEEEccccEEEEccccccEEEEEEcccccEEEEccHHHHHccccEEEEEEccccccEEEccccEEEEEEEEEEc
MLIIYLHwdsggvphcfpqfgpgpmqqhgfarnmdwsildsenvegnpvitlelkdgpysraMWDFSFQALFKVILNTKSISTeltitntdnkpfsfssALHTYFRASVtgasvkglkgcktlnkdpdpknpmegkeerdrvtfpgfvdciyldapsvvhldnglgdtitirntnwsdavlwnphmqmeacykdfvcvenakigkvqlepeqswtakqhlsin
MLIIYLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVtgasvkglkgcktlnkdpdpknpmegkeerdrVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKIGkvqlepeqswtakqhlsin
MLIIYLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKIGKVQLEPEQSWTAKQHLSIN
*LIIYLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGC*********************VTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKIGKVQ****************
MLIIYLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKIGKVQLEPEQSWTAKQHLSIN
MLIIYLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDP**********DRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKIGKVQLEPEQSWTAKQHLSIN
MLIIYLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKIGKVQLEPEQSWTAKQHLSIN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLIIYLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKIGKVQLEPEQSWTAKQHLSIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
Q40784329 Putative glucose-6-phosph N/A no 0.932 0.632 0.354 2e-24
P39173294 Putative glucose-6-phosph N/A no 0.829 0.629 0.323 8e-15
Q03161297 Glucose-6-phosphate 1-epi yes no 0.901 0.676 0.273 3e-13
P44160271 Putative glucose-6-phosph yes no 0.717 0.590 0.269 9e-07
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1 Back     alignment and function desciption
 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 119/231 (51%), Gaps = 23/231 (9%)

Query: 11  GGVPHCFPQFGP-GPMQQHGFARNMDWSI-LDSENVEGNPVIT----LELKDGPYSRAMW 64
           GG+P C PQFG  G ++QHGFARN  WSI  D   +  NP I     L L+       +W
Sbjct: 83  GGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAIKAFVDLILRPAEEDLKIW 142

Query: 65  DFSFQALFKVILNTK---SISTELTITNTDNKPFSFSSALHTYFRAS-VTGASVKGLKGC 120
             SF+   +V L      S+++ +  TNTD +PFS++ A HTYF  S ++   V+GL+  
Sbjct: 143 PHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETM 202

Query: 121 KTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPS-VVHLDNGLGDTITIRNTNWSDA 179
             L+   + K      E+ D + F   VD +YL APS +  +D+    T  +      DA
Sbjct: 203 DYLD---NLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDA 259

Query: 180 VLWNP------HMQ--MEACYKDFVCVENAKIGK-VQLEPEQSWTAKQHLS 221
           V+WNP       MQ   +A YK+ +CVE A + K + L+P + W  +  LS
Sbjct: 260 VVWNPWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALS 310

Cenchrus ciliaris (taxid: 35872)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2 Back     alignment and function description
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1 Back     alignment and function description
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
225430722304 PREDICTED: putative glucose-6-phosphate 0.959 0.703 0.845 1e-109
255561108313 aldose 1-epimerase, putative [Ricinus co 0.955 0.680 0.863 1e-109
356496743311 PREDICTED: putative glucose-6-phosphate 0.955 0.684 0.840 1e-108
255638532311 unknown [Glycine max] 0.955 0.684 0.830 1e-107
224094811294 predicted protein [Populus trichocarpa] 0.959 0.727 0.831 1e-106
388514773312 unknown [Lotus japonicus] 0.955 0.682 0.821 1e-104
357483505312 Apospory-associated protein [Medicago tr 0.955 0.682 0.798 1e-102
297794353307 aldose 1-epimerase family protein [Arabi 0.959 0.697 0.780 1e-101
15240009307 aldose 1-epimerase family protein [Arabi 0.959 0.697 0.775 1e-100
343173183315 aldose 1-epimerase family protein, parti 0.955 0.676 0.774 1e-99
>gi|225430722|ref|XP_002265594.1| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi|297735137|emb|CBI17499.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 181/214 (84%), Positives = 200/214 (93%)

Query: 10  SGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQ 69
           SGG+PHCFPQFGPGPMQQHGFARNM+WS +DSENVEGNPV+TLELKDGPYSR+MWDFSF+
Sbjct: 91  SGGIPHCFPQFGPGPMQQHGFARNMNWSAVDSENVEGNPVVTLELKDGPYSRSMWDFSFR 150

Query: 70  ALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDP 129
           AL+KVILN  S+STEL ITNTD KPFSFS+ALHTYF AS TGASVKGLKGCKTLNKD DP
Sbjct: 151 ALYKVILNKNSLSTELVITNTDKKPFSFSTALHTYFSASATGASVKGLKGCKTLNKDLDP 210

Query: 130 KNPMEGKEERDRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQME 189
            NP+EGKEERD VTFPGFVDCIYLDAP+ +HLDNGLGD IT++NTNWSD VLWNP++QME
Sbjct: 211 TNPLEGKEERDVVTFPGFVDCIYLDAPNALHLDNGLGDIITVKNTNWSDTVLWNPYLQME 270

Query: 190 ACYKDFVCVENAKIGKVQLEPEQSWTAKQHLSIN 223
           ACY+DFVCVENAKIGKVQLEPEQSW+A QHLSI+
Sbjct: 271 ACYRDFVCVENAKIGKVQLEPEQSWSAIQHLSID 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255561108|ref|XP_002521566.1| aldose 1-epimerase, putative [Ricinus communis] gi|223539244|gb|EEF40837.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356496743|ref|XP_003517225.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max] Back     alignment and taxonomy information
>gi|255638532|gb|ACU19574.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224094811|ref|XP_002310246.1| predicted protein [Populus trichocarpa] gi|222853149|gb|EEE90696.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388514773|gb|AFK45448.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357483505|ref|XP_003612039.1| Apospory-associated protein [Medicago truncatula] gi|355513374|gb|AES94997.1| Apospory-associated protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297794353|ref|XP_002865061.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297310896|gb|EFH41320.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240009|ref|NP_201454.1| aldose 1-epimerase family protein [Arabidopsis thaliana] gi|334188676|ref|NP_001190635.1| aldose 1-epimerase family protein [Arabidopsis thaliana] gi|10177534|dbj|BAB10929.1| apospory-associated protein C-like [Arabidopsis thaliana] gi|21539433|gb|AAM53269.1| apospory-associated protein C-like protein [Arabidopsis thaliana] gi|23197658|gb|AAN15356.1| apospory-associated protein C-like protein [Arabidopsis thaliana] gi|332010842|gb|AED98225.1| aldose 1-epimerase family protein [Arabidopsis thaliana] gi|332010843|gb|AED98226.1| aldose 1-epimerase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|343173183|gb|AEL99294.1| aldose 1-epimerase family protein, partial [Silene latifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
TAIR|locus:2154870307 AT5G66530 [Arabidopsis thalian 0.959 0.697 0.775 1.4e-94
TAIR|locus:2128519306 AT4G23730 [Arabidopsis thalian 0.941 0.686 0.346 1.2e-26
TAIR|locus:2165580312 AT5G57330 [Arabidopsis thalian 0.937 0.669 0.326 7.6e-25
TAIR|locus:2082842317 AT3G61610 [Arabidopsis thalian 0.905 0.637 0.333 1.6e-22
UNIPROTKB|Q9KQJ7296 VC_2001 "Putative uncharacteri 0.825 0.621 0.315 4.3e-22
TIGR_CMR|VC_2001296 VC_2001 "conserved hypothetica 0.825 0.621 0.315 4.3e-22
TAIR|locus:2084233306 AT3G01590 [Arabidopsis thalian 0.937 0.683 0.311 4.3e-22
TAIR|locus:2145748306 AT5G14500 [Arabidopsis thalian 0.932 0.679 0.305 1.9e-21
FB|FBgn0028540297 CG9008 [Drosophila melanogaste 0.928 0.696 0.296 4.4e-20
TAIR|locus:2117572318 AT4G25900 [Arabidopsis thalian 0.932 0.654 0.287 9.2e-20
TAIR|locus:2154870 AT5G66530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
 Identities = 166/214 (77%), Positives = 190/214 (88%)

Query:    10 SGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQ 69
             SGG+PHCFPQFGPG +QQHGF RNMDWS++DS+N + N  +TLELKDGPYSRAMWDF+FQ
Sbjct:    94 SGGIPHCFPQFGPGLIQQHGFGRNMDWSVVDSQNADDNAAVTLELKDGPYSRAMWDFAFQ 153

Query:    70 ALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDP 129
             AL+KVI+   S+STEL ITNTD+KPFSFS+ALHTYFRAS  GASV+GLKGCKTLNKDPDP
Sbjct:   154 ALYKVIVGADSLSTELKITNTDDKPFSFSTALHTYFRASSAGASVRGLKGCKTLNKDPDP 213

Query:   130 KNPMEGKEERDRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQME 189
             KNP+EGKE+RD VTFPGFVD +YLDAP+ +  DNGLGD I I+NTNWSDAVLWNPH QME
Sbjct:   214 KNPIEGKEDRDAVTFPGFVDTVYLDAPNELQFDNGLGDKIIIKNTNWSDAVLWNPHTQME 273

Query:   190 ACYKDFVCVENAKIGKVQLEPEQSWTAKQHLSIN 223
             ACY+DFVCVENAK+G V+LEP QSWTA Q LSI+
Sbjct:   274 ACYRDFVCVENAKLGDVKLEPGQSWTATQLLSIS 307
GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016853 "isomerase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2001 VC_2001 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0028540 CG9008 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.3LOW CONFIDENCE prediction!
3rd Layer5.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024909001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (278 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015125001
RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (623 aa)
   • •  0.901
GSVIVG00034293001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (498 aa)
     •  0.899
GSVIVG00030550001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (581 aa)
     •  0.899
GSVIVG00022229001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (523 aa)
     •  0.899
GSVIVG00016656001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (470 aa)
     •  0.899
GSVIVG00014624001
RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (340 aa)
     •  0.899
GSVIVG00014427001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (485 aa)
     •  0.899
GSVIVG00010644001
SubName- Full=Chromosome chr7 scaffold_275, whole genome shotgun sequence; (479 aa)
     •  0.899
GSVIVG00010600001
SubName- Full=Chromosome chr16 scaffold_271, whole genome shotgun sequence; (621 aa)
     •  0.899
GSVIVG00038435001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (620 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
cd09020269 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate 6e-85
COG0676287 COG0676, COG0676, Uncharacterized enzymes related 5e-34
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 9e-32
cd09025271 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, 9e-26
cd09024288 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim 1e-12
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 7e-12
COG2017308 COG2017, GalM, Galactose mutarotase and related en 7e-11
>gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like Back     alignment and domain information 
 Score =  252 bits (646), Expect = 6e-85
 Identities = 85/226 (37%), Positives = 121/226 (53%), Gaps = 19/226 (8%)

Query: 11  GGVPHCFPQFGPGP----MQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDF 66
           GG+P C+P FGP      +  HGFAR   W +L+    E    ++LEL D   +RA+W  
Sbjct: 48  GGIPVCWPWFGPHGPNADLPAHGFARTRLWELLEVSEDEDGVTVSLELDDTDETRAIWPH 107

Query: 67  SFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRAS-VTGASVKGLKGCKTLNK 125
           +F+    V L   ++  ELT+TNT +KPFSF++ALHTYFR S +    V+GL+G   L+K
Sbjct: 108 AFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDK 167

Query: 126 DPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-DNGLGDTITIRNTNWSDAVLWNP 184
             D +     K +   VTF G VD +YL+ P+ + + D   G  I I  +    AV+WNP
Sbjct: 168 LTDQRE----KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNP 223

Query: 185 HM----QMEAC----YKDFVCVENAKIGK-VQLEPEQSWTAKQHLS 221
            +    +M       Y+  VCVE A +   V L P +S T  Q +S
Sbjct: 224 WIEKAARMADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269

D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269
>gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
KOG1594305 consensus Uncharacterized enzymes related to aldos 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 100.0
PRK15172300 putative aldose-1-epimerase; Provisional 100.0
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 100.0
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 100.0
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 100.0
COG2017308 GalM Galactose mutarotase and related enzymes [Car 100.0
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 99.97
PLN00194337 aldose 1-epimerase; Provisional 99.97
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 99.96
PRK11055342 galM galactose-1-epimerase; Provisional 99.95
PTZ00485376 aldolase 1-epimerase; Provisional 99.92
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.88
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 99.78
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 99.51
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 99.15
PF14315274 DUF4380: Domain of unknown function (DUF4380) 93.27
COG0832106 UreB Urea amidohydrolase (urease) beta subunit [Am 90.62
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 89.7
TIGR00192101 urease_beta urease, beta subunit. In a number of s 89.69
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 89.68
PRK13203102 ureB urease subunit beta; Reviewed 89.4
PRK13202104 ureB urease subunit beta; Reviewed 87.74
PRK13201136 ureB urease subunit beta; Reviewed 86.73
PRK13205162 ureB urease subunit beta; Reviewed 86.54
PRK13204159 ureB urease subunit beta; Reviewed 85.57
PRK13198158 ureB urease subunit beta; Reviewed 85.23
PF09095278 DUF1926: Domain of unknown function (DUF1926); Int 81.83
PF0550689 DUF756: Domain of unknown function (DUF756); Inter 81.37
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-53  Score=331.75  Aligned_cols=212  Identities=38%  Similarity=0.675  Sum_probs=191.8

Q ss_pred             cccccccEEcCCCCC-CCCCCceeEeeCCcEEEeeecCC---CccEEEEEEecCccccccCCcceEEEEEEEEeCCcEEE
Q 027452            8 WDSGGVPHCFPQFGP-GPMQQHGFARNMDWSILDSENVE---GNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSIST   83 (223)
Q Consensus         8 ~~rgG~PvlfP~~g~-~~~~~HGf~r~~~w~v~~~~~~~---~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i   83 (223)
                      +||||+|+|||+||. |.+++|||||++.|+++......   ..+.|.|.|.+++++++.||+.|++++++.|.++.|+.
T Consensus        70 pIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~  149 (305)
T KOG1594|consen   70 PIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTL  149 (305)
T ss_pred             cccCCcceEeeccCCCCcccccccccceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEE
Confidence            799999999999998 99999999999999998765322   24789999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCcEEEeeeccceEEEeece-eEEecccCCeeecCCCCCCCCCCCccccceeecCCCcceEEeCCCCeEEE-
Q 027452           84 ELTITNTDNKPFSFSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-  161 (223)
Q Consensus        84 ~~~v~N~~~~~~p~~~g~HpyF~~~~~~-~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l-  161 (223)
                      +.+|+|++++|+-|++++|+||+++|++ ++++|+++++|+|++......   +++++.+.|++++|++|...+..+.| 
T Consensus       150 ~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~---tE~~davTF~~e~DrvYl~tp~e~aI~  226 (305)
T KOG1594|consen  150 TSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERF---TEQRDAVTFNSEVDRVYLNTPTELAIF  226 (305)
T ss_pred             EEEeecCCCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhc---cccCceEeeccceeeEEecCCceEEEE
Confidence            9999999999999999999999999996 999999998888877654432   45678999999999999999888887 


Q ss_pred             eCCCCCeEEEEeCCCCcEEEeCCCCCC--------CCCCCceEEeccCceec-eEECCCCeEEEEEEEEe
Q 027452          162 DNGLGDTITIRNTNWSDAVLWNPHMQM--------EACYKDFVCVENAKIGK-VQLEPEQSWTAKQHLSI  222 (223)
Q Consensus       162 ~~~~~~~l~i~~~~~~~~vvwtp~~~~--------~~~~~~~vCiEP~~~~~-~~L~pGe~~~~~~~i~v  222 (223)
                      |...++++.|...++|+.||||||.++        +++|+.|+|||+..++. ++|+||++|++.+.+++
T Consensus       227 dh~~krti~l~k~g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsi  296 (305)
T KOG1594|consen  227 DHEKKRTIVLKKEGLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSI  296 (305)
T ss_pred             EeccccEEEEeccCCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEE
Confidence            888999999999999999999999865        67899999999999885 99999999999998765

>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13202 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13201 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13205 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13204 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13198 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals Back     alignment and domain information
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
2hta_A309 Crystal Structure Of A Putative Mutarotase (Yead) F 5e-17
2cir_A297 Structure-Based Functional Annotation: Yeast Ymr099 2e-14
2ciq_A297 Structure-Based Functional Annotation: Yeast Ymr099 3e-14
1jov_A270 Crystal Structure Analysis Of Hi1317 Length = 270 3e-08
3k25_A289 Crystal Structure Of Slr1438 Protein From Synechocy 6e-07
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 Back     alignment and structure 
Iteration: 1

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 102/218 (46%), Gaps = 28/218 (12%)
Query: 11  GGVPHCFPQFGPGPMQ---QHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMW--D 65
           GGVP C+P FGP   Q    HGFARN+ W++      +   ++T EL+    +R  W  D
Sbjct: 90  GGVPICWPWFGPAAQQGLPSHGFARNLPWALKAHNEDDNGVMLTFELQSSEATRKYWPHD 149
Query: 66  FSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRAS-VTGASVKGLKGCKTLN 124
           F+  A FKV    K+   EL      +  F+ +SALH+YF    +    V GL G + ++
Sbjct: 150 FTLLARFKV---GKTCEIELEA----HGEFATTSALHSYFNVGDIANVKVSGL-GDRFID 201
Query: 125 KDPDPKNPMEGKEERDRVTFPGFVDCIYL--DAPSVVHLDNGLGDTITIRNTNWSDAVLW 182
           K  D K   EG       TFP   D +YL  +A SV+H D  L  TI + + +  + V W
Sbjct: 202 KVNDAK---EGVLTDGIQTFPDRTDRVYLNPEACSVIH-DATLNRTIDVVHHHHLNVVGW 257
Query: 183 NPHMQMEAC--------YKDFVCVENAKIGKVQLEPEQ 212
           NP   +           YK FVCVE       Q   E+
Sbjct: 258 NPGPALSVSMGDMPDDGYKTFVCVETVYATAPQQATEE 295
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 Back     alignment and structure
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 Back     alignment and structure
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 Back     alignment and structure
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target Sgr112 Length = 289 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 1e-57
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 1e-54
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 2e-54
1jov_A270 HI1317; hypothetical protein, structure 2 function 5e-46
3q1n_A294 Galactose mutarotase related enzyme; structural ge 2e-32
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 2e-31
3os7_A341 Galactose mutarotase-like protein; structural geno 1e-21
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 6e-17
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 7e-16
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure
 Score =  183 bits (466), Expect = 1e-57
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 35/240 (14%)

Query: 8   WDSGGVPHCFPQFGP------------GPMQQHGFARNMDWSILDSENVEGNPVITLELK 55
              GG+P  FP  G               ++QHGFAR++ W ++  +  + N  + L L 
Sbjct: 59  SVRGGIPILFPICGNLPQDQFNHAGKSYRLKQHGFARDLPWEVIGQQT-QDNARLDLRLS 117

Query: 56  DGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115
               +   + F+F+ +F   L   S+  E  I N  ++   FS   H YF          
Sbjct: 118 HNDATLEAFPFAFELVFSYQLQGHSLRIEQRIANLGDQRMPFSLGFHPYFFCREKLGITL 177

Query: 116 GLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIY--LDAPSVVHLDNGLGDTITIRN 173
            +     L++     +  +G            +D  +  +  P    +D      I +  
Sbjct: 178 AIPANDYLDQKTGDCHGYDG----QLNLTSPELDLAFTQISQPRAHFIDPDRNLKIEVSF 233

Query: 174 T-NWSDAVLWNPHMQMEACYKDFVCVE---------NAKIGKVQLEPEQSWTAKQHLSIN 223
           +  +   VLW          KD++C+E         N+      +EP  S +A  +  ++
Sbjct: 234 SELYQTLVLWTV------AGKDYLCLEPWSGPRNALNSGEQLAWVEPYSSRSAWVNFQVS 287
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
1jov_A270 HI1317; hypothetical protein, structure 2 function 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 100.0
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 100.0
3os7_A341 Galactose mutarotase-like protein; structural geno 100.0
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 100.0
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 100.0
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 100.0
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 100.0
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 99.98
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 99.97
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 99.97
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.86
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 90.62
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 87.87
4ubp_B126 Protein (urease (chain B)); bacillus pasteurii, ni 87.64
4ac7_B126 Urease subunit beta; hydrolase, bacillus pasteurii 87.64
2yfo_A 720 Alpha-galactosidase-sucrose kinase agask; hydrolas 83.63
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
Probab=100.00  E-value=1e-45  Score=307.36  Aligned_cols=203  Identities=22%  Similarity=0.391  Sum_probs=167.6

Q ss_pred             cccccccEEcCCCCC---C---------CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEE
Q 027452            8 WDSGGVPHCFPQFGP---G---------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVI   75 (223)
Q Consensus         8 ~~rgG~PvlfP~~g~---~---------~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~   75 (223)
                      ++|||+|+||||+||   +         .+++|||+|++.|++++.. +++..+|+|+|.++++++++|||+|+++++|+
T Consensus        59 ~~~gg~Pvl~P~~gri~~g~~~~~g~~y~l~~HGf~r~~~W~~~~~~-~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~  137 (289)
T 3k25_A           59 SVRGGIPILFPICGNLPQDQFNHAGKSYRLKQHGFARDLPWEVIGQQ-TQDNARLDLRLSHNDATLEAFPFAFELVFSYQ  137 (289)
T ss_dssp             CCCBSBCEEBSCSSCCGGGEEEETTEEEECCTTBSGGGSCCEEEEEE-CSSSEEEEEEEECCHHHHTTSCSCEEEEEEEE
T ss_pred             ccCCCCCEEECCCCCCCCCEEEECCEEeecCCCCCcccCCeEEEEec-CCCCcEEEEEEecChhHHhcCCceEEEEEEEE
Confidence            589999999999999   1         5899999999999999765 33456899999998877899999999999999


Q ss_pred             EeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeece-eEEecccCCeeecCCCCCCCCCCCccccceeecC-CCcceEEe
Q 027452           76 LNTKSISTELTITNTDNKPFSFSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFP-GFVDCIYL  153 (223)
Q Consensus        76 L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~-~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~D~~y~  153 (223)
                      |++++|+++++++|+++++|||++|+||||++++.. +++.+.. ..|+|.......     ...+.+.+. ..+|++|.
T Consensus       138 L~~~~L~i~~~~~N~~~~~~~~~~~~H~yF~~~~~~~~~~~~~~-~~~~d~~~~~~~-----~~~~~~~~~~~~~D~~~~  211 (289)
T 3k25_A          138 LQGHSLRIEQRIANLGDQRMPFSLGFHPYFFCREKLGITLAIPA-NDYLDQKTGDCH-----GYDGQLNLTSPELDLAFT  211 (289)
T ss_dssp             EETTEEEEEEEEEECSSSCEEECCEECCEEECSCCTTCEEECSC-SEEEETTTCCEE-----ECCSCCCTTSSEEEEEEC
T ss_pred             EeCCEEEEEEEEEcCCCCcceeEEecCcEEccCCcceEEEEcCc-ccccccccCccc-----ccCCcccCCchhhceEee
Confidence            999999999999999999999999999999999866 7777654 345664332110     112234443 57899998


Q ss_pred             CC-CCeEEE-eCCCCCeEEEEeCC-CCcEEEeCCCCCCCCCCCceEEeccCce---------eceEECCCCeEEEEEEEE
Q 027452          154 DA-PSVVHL-DNGLGDTITIRNTN-WSDAVLWNPHMQMEACYKDFVCVENAKI---------GKVQLEPEQSWTAKQHLS  221 (223)
Q Consensus       154 ~~-~~~~~l-~~~~~~~l~i~~~~-~~~~vvwtp~~~~~~~~~~~vCiEP~~~---------~~~~L~pGe~~~~~~~i~  221 (223)
                      .. .+.++| ++..+++|+|..++ ++++|||||..      ++|||||||+.         +.++|+|||+++++++|+
T Consensus       212 ~~~~~~~~l~~~~~~~~i~v~~~~~~~~~vvw~~~~------~~fvCvEP~~~~~da~n~~~~~~~L~PGe~~~~~~~i~  285 (289)
T 3k25_A          212 QISQPRAHFIDPDRNLKIEVSFSELYQTLVLWTVAG------KDYLCLEPWSGPRNALNSGEQLAWVEPYSSRSAWVNFQ  285 (289)
T ss_dssp             CCSSSEEEEEETTTTEEEEEEECTTCCEEEEEEESS------SCEEEEEEESSCTTHHHHCTTCEEECTTEEEEEEEEEE
T ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCCcEEEEEecCC------CCEEEEccccCCCCcccCCCCcEEECCCCeEEEEEEEE
Confidence            75 457888 88889999999985 99999999864      78999999972         239999999999999998


Q ss_pred             eC
Q 027452          222 IN  223 (223)
Q Consensus       222 v~  223 (223)
                      ++
T Consensus       286 v~  287 (289)
T 3k25_A          286 VS  287 (289)
T ss_dssp             EE
T ss_pred             EE
Confidence            74
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 223
d1jova_269 b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph 1e-47
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

 Score =  156 bits (394), Expect = 1e-47
 Identities = 53/218 (24%), Positives = 79/218 (36%), Gaps = 26/218 (11%)

Query: 10  SGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQ 69
            GGVP C+P FG      HG AR   W +           +  EL              +
Sbjct: 70  RGGVPICYPWFGGVKQPAHGTARIRLWQLSHYYISVHKVRLEFELFS-------DLNIIE 122

Query: 70  ALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRAS-VTGASVKGLKGCKTLNKDPD 128
           A   ++      + +  +T T     S  +ALHTYF    +    V+GL           
Sbjct: 123 AKVSMVF-----TDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFN----- 172

Query: 129 PKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQ 187
                + +           VDCIY        + D     TI + + N S  VLWNP  +
Sbjct: 173 -SLNQQQENVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHK 231

Query: 188 M-----EACYKDFVCVENAKIGKVQLEPEQSWTAKQHL 220
                 E  Y+  +C+E A+I  + LE  +S + +  L
Sbjct: 232 KTSGMSETGYQKMLCLETARIHHL-LEFGESLSVEISL 268

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.92
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.92
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.92
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.9
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 89.95
d4ubpb_122 Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 87.09
d1e9ya1133 Urease, beta-subunit {Helicobacter pylori [TaxId: 82.33
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=9.5e-47  Score=308.75  Aligned_cols=195  Identities=27%  Similarity=0.360  Sum_probs=154.3

Q ss_pred             cccccccEEcCCCCCCCCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEeCCcEEEEEEE
Q 027452            8 WDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTI   87 (223)
Q Consensus         8 ~~rgG~PvlfP~~g~~~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v   87 (223)
                      +||||+||||||||+.++|+|||||++.|+|++++++  ...+.++++     ...|||.|+++++|+|+     +++++
T Consensus        68 ~IRGGiPi~fP~fG~~~~p~HGFAR~~~w~l~~~~~~--~~~~~l~~~-----l~~~~~~f~~~~~~~lt-----l~~~l  135 (269)
T d1jova_          68 AIRGGVPICYPWFGGVKQPAHGTARIRLWQLSHYYIS--VHKVRLEFE-----LFSDLNIIEAKVSMVFT-----DKCHL  135 (269)
T ss_dssp             CCSBSCCEEBSSCGGGSSSTTBSGGGSBCEEEEEEEE--TTEEEEEEE-----EECTTSCEEEEEEEEES-----SSEEE
T ss_pred             cccCCcceeCcccCCCCCCCCccccccceEEEEEecC--CceEEEEEE-----eccCCCcceEEEEEEec-----cEEEE
Confidence            5999999999999998899999999999999987633  233444332     13478888988888874     34556


Q ss_pred             EeCCCCcEEEeeeccceEEEeece-eEEecccCCeeecCCCCCCCCCCCccccceeecCCCcceEEeCCCCeEEE-eCCC
Q 027452           88 TNTDNKPFSFSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-DNGL  165 (223)
Q Consensus        88 ~N~~~~~~p~~~g~HpyF~~~~~~-~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l-~~~~  165 (223)
                      +|+++++|||++|+||||++++.. +.+.++.+..|.+ .....     ....+.+.+.+++|++|.+.+..+.| ++..
T Consensus       136 ~n~~~~~~pf~~g~HpyF~v~d~~~~~v~gl~~~~~~~-~~~~~-----~~~~~~~~~~~~~D~i~~~~~~~~~i~d~~~  209 (269)
T d1jova_         136 TFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNS-LNQQQ-----ENVPSPRHISENVDCIYSAENMQNQILDKSF  209 (269)
T ss_dssp             EEEECCSSCEEEEECCEEECSCGGGEEEESCCSEEEET-TTTEE-----EECCSSBCCSSCEEEEEECSSSEEEEEETTT
T ss_pred             EEccCCCccceecccceEecCCccceEEecCCcccccc-ccccc-----cccCCCcccCcCeeEEecCCCCcEEEEeCCC
Confidence            677788999999999999999877 8999887765433 32111     11233466778899999998888888 9989


Q ss_pred             CCeEEEEeCCCCcEEEeCCCCCC-----CCCCCceEEeccCceeceEECCCCeEEEEEEEE
Q 027452          166 GDTITIRNTNWSDAVLWNPHMQM-----EACYKDFVCVENAKIGKVQLEPEQSWTAKQHLS  221 (223)
Q Consensus       166 ~~~l~i~~~~~~~~vvwtp~~~~-----~~~~~~~vCiEP~~~~~~~L~pGe~~~~~~~i~  221 (223)
                      +++|+|..++++++|||||+.++     +++|++||||||+.. ..+|+|||+++++++|+
T Consensus       210 ~~~i~v~~~g~~~~vVWnP~~~~a~~~~d~~~~~fvCVEp~~~-~~~L~PGes~~~~~~ir  269 (269)
T d1jova_         210 NRTIALHHHNASQFVLWNPWHKKTSGMSETGYQKMLCLETARI-HHLLEFGESLSVEISLK  269 (269)
T ss_dssp             TEEEEEEEESCSEEEEEECTTSCCTTCCTTGGGGEEEEEEEEE-EEEECTTCEEEEEEEEC
T ss_pred             CCEEEEEEeCCCcEEEECCccchhccccccCCCCEEEECcccC-CceECCCCeEEEEEEEC
Confidence            99999999999999999998753     456789999999763 35899999999998874
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure